AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022299.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022299.01.T01 MTR_4g087460 94.044 319 11 2 1 318 1 312 0.0 614
MsG0480022299.01.T01 MTR_3g098470 41.722 302 150 9 16 310 29 311 1.63e-73 229
MsG0480022299.01.T01 MTR_1g031180 39.667 300 159 8 16 310 34 316 3.51e-66 211
MsG0480022299.01.T01 MTR_8g096060 39.667 300 156 9 16 310 31 310 2.64e-65 208
MsG0480022299.01.T01 MTR_7g076660 39.667 300 146 8 24 310 9 286 2.31e-63 202
MsG0480022299.01.T01 MTR_7g076660 39.667 300 146 8 24 310 10 287 2.92e-63 202
MsG0480022299.01.T01 MTR_7g076655 38.667 300 149 8 24 310 9 286 2.35e-59 192
MsG0480022299.01.T01 MTR_5g062280 38.111 307 144 7 19 302 4 287 3.39e-58 189
MsG0480022299.01.T01 MTR_8g031980 36.482 307 148 8 21 302 6 290 4.33e-58 189
MsG0480022299.01.T01 MTR_8g032000 36.842 304 145 8 24 302 9 290 1.49e-54 180
MsG0480022299.01.T01 MTR_7g076660 37.456 283 142 8 41 310 2 262 2.66e-54 178
MsG0480022299.01.T01 MTR_8g032010 34.628 309 155 8 20 303 5 291 7.50e-54 178
MsG0480022299.01.T01 MTR_8g031960 35.410 305 150 8 23 302 9 291 2.84e-53 177
MsG0480022299.01.T01 MTR_8g031990 33.228 316 164 8 20 310 5 298 1.12e-52 175
MsG0480022299.01.T01 MTR_8g031610 36.013 311 152 9 24 310 7 294 2.33e-52 174
MsG0480022299.01.T01 MTR_8g031910 36.928 306 157 9 19 310 4 287 3.43e-52 174
MsG0480022299.01.T01 MTR_8g031940 35.144 313 155 9 24 310 9 299 4.22e-51 171
MsG0480022299.01.T01 MTR_8g031600 37.459 307 145 9 22 303 7 291 8.60e-51 170
MsG0480022299.01.T01 MTR_8g031630 36.538 312 150 10 24 310 9 297 1.35e-50 170
MsG0480022299.01.T01 MTR_8g032020 33.866 313 159 8 24 310 10 300 2.04e-50 169
MsG0480022299.01.T01 MTR_8g031650 36.334 311 150 10 25 310 104 391 4.13e-49 168
MsG0480022299.01.T01 MTR_8g031650 32.500 120 66 4 169 285 1 108 3.68e-12 67.0
MsG0480022299.01.T01 MTR_7g076665 35.548 301 150 8 24 302 9 287 4.14e-49 166
MsG0480022299.01.T01 MTR_3g079320 36.624 314 148 9 18 302 7 298 7.30e-49 166
MsG0480022299.01.T01 MTR_8g031900 34.667 300 154 9 24 303 9 286 8.40e-48 162
MsG0480022299.01.T01 MTR_8g031650 36.334 311 150 10 25 310 270 557 9.44e-48 168
MsG0480022299.01.T01 MTR_8g031650 37.282 287 134 9 24 285 9 274 9.17e-47 166
MsG0480022299.01.T01 MTR_7g106800 41.905 210 108 6 24 230 11 209 1.24e-40 143
MsG0480022299.01.T01 MTR_8g031850 31.673 281 150 8 24 303 9 248 4.10e-37 133
MsG0480022299.01.T01 MTR_5g083430 32.821 195 111 5 109 302 1 176 8.97e-28 107
MsG0480022299.01.T01 MTR_8g032030 38.674 181 77 5 21 176 6 177 2.87e-27 107
MsG0480022299.01.T01 MTR_6g041980 31.973 147 85 5 24 167 69 203 3.77e-14 71.6
MsG0480022299.01.T01 MTR_6g041980 32.192 146 84 5 25 167 70 203 9.73e-14 71.2
MsG0480022299.01.T01 MTR_4g105310 26.059 307 171 8 24 315 51 316 3.35e-12 66.6
MsG0480022299.01.T01 MTR_1g100315 29.032 217 122 5 24 240 32 216 1.94e-11 64.3
MsG0480022299.01.T01 MTR_1g100335 26.210 248 143 5 24 271 32 239 2.70e-11 63.2
MsG0480022299.01.T01 MTR_1g100335 26.210 248 143 5 24 271 32 239 2.93e-11 63.5
MsG0480022299.01.T01 MTR_1g100335 26.210 248 143 5 24 271 32 239 4.73e-11 63.2
MsG0480022299.01.T01 MTR_8g044240 35.345 116 68 3 25 137 75 186 5.94e-11 63.2
MsG0480022299.01.T01 MTR_3g068070 27.895 190 123 5 15 199 11 191 8.05e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022299.01.T01 AT3G59710 58.644 295 102 6 10 303 6 281 2.70e-115 335
MsG0480022299.01.T01 AT3G59710 58.885 287 99 5 17 303 24 291 3.47e-114 332
MsG0480022299.01.T01 AT3G59710 59.028 288 99 5 16 303 42 310 6.67e-114 332
MsG0480022299.01.T01 AT5G61830 43.522 301 149 8 16 310 31 316 5.22e-71 223
MsG0480022299.01.T01 AT5G61830 43.522 301 149 8 16 310 31 316 5.22e-71 223
MsG0480022299.01.T01 AT5G51030 40.667 300 156 7 16 310 32 314 6.23e-70 220
MsG0480022299.01.T01 AT3G61220 35.831 307 158 6 24 310 9 296 3.91e-56 184
MsG0480022299.01.T01 AT3G61220 35.831 307 158 6 24 310 16 303 6.92e-56 184
MsG0480022299.01.T01 AT3G61220 35.831 307 158 6 24 310 40 327 1.32e-55 184
MsG0480022299.01.T01 AT2G24190 34.365 323 165 8 8 310 6 301 5.62e-53 176
MsG0480022299.01.T01 AT1G01800 34.516 310 161 7 23 310 6 295 6.79e-53 176
MsG0480022299.01.T01 AT2G24190 34.528 307 162 6 24 310 9 296 2.32e-52 174
MsG0480022299.01.T01 AT1G01800 31.000 200 119 4 112 310 79 260 6.82e-28 109
MsG0480022299.01.T01 AT4G09750 33.824 136 85 3 25 160 47 177 1.64e-13 70.5

Find 68 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATAATTCATATAAATT+AGG 0.194089 4:+70842442 MsG0480022299.01.T01:CDS
TCCTCCTTCAAAGACAAATT+TGG 0.232306 4:+70841305 MsG0480022299.01.T01:CDS
TAGCTCAAGACTTGGGTCTT+TGG 0.300326 4:+70842088 MsG0480022299.01.T01:CDS
GTCAAGGGTGGCCATCATAT+TGG 0.371559 4:+70842353 MsG0480022299.01.T01:CDS
AGTGCAGGAGAAGGAAAATA+AGG 0.378888 4:-70840937 None:intergenic
GGCTCCAAATTTGTCTTTGA+AGG 0.388365 4:-70841309 None:intergenic
GTTTAGAATTAGCAACTTGT+TGG 0.400132 4:-70842648 None:intergenic
GAGAGCATTCGAGCGCAAAT+AGG 0.402815 4:+70841209 MsG0480022299.01.T01:CDS
TCTAGAGAGTGAGGACTTGA+AGG 0.406286 4:+70842267 MsG0480022299.01.T01:CDS
TTTCTAAGAGATGTGAGAAA+TGG 0.407157 4:+70842319 MsG0480022299.01.T01:CDS
GTCATGAAAACAAATTTCTA+TGG 0.424036 4:+70841981 MsG0480022299.01.T01:CDS
CTCAATGTTAGCTCAAGACT+TGG 0.436992 4:+70842080 MsG0480022299.01.T01:CDS
GGAAGAAGAGATCAAGGAAA+TGG 0.444648 4:+70842288 MsG0480022299.01.T01:CDS
GGAGAAGGAAAATAAGGTTC+TGG 0.450582 4:-70840931 None:intergenic
AAGAAGAGGAGCAACGAAAG+AGG 0.458793 4:-70842034 None:intergenic
CCGGAGGTAACAAGGGCATT+GGG 0.462430 4:+70841102 MsG0480022299.01.T01:CDS
ACTGCTAGAGACAAGCAAAA+AGG 0.463408 4:+70841173 MsG0480022299.01.T01:CDS
AGTGCCTCTATAAGCAACTT+AGG 0.466314 4:-70842005 None:intergenic
CCGCCACACCACTTGCCCAC+TGG 0.467591 4:+70842592 MsG0480022299.01.T01:CDS
CTTGAAGGAAGAAGAGATCA+AGG 0.478401 4:+70842282 MsG0480022299.01.T01:CDS
CTCCTGCACTTTGCTCAACC+AGG 0.481741 4:+70840950 MsG0480022299.01.T01:CDS
TATGCAGAAGGTGACAAACT+TGG 0.485647 4:+70842231 MsG0480022299.01.T01:intron
GTCTTTGAAGGAGGATGCAA+AGG 0.489278 4:-70841297 None:intergenic
ACCGGAGGTAACAAGGGCAT+TGG 0.496161 4:+70841101 MsG0480022299.01.T01:CDS
AGAAGAGGAGCAACGAAAGA+GGG 0.498513 4:-70842033 None:intergenic
CCCAATGCCCTTGTTACCTC+CGG 0.499855 4:-70841102 None:intergenic
TGGTCCTAAGTTGCTTATAG+AGG 0.503826 4:+70842001 MsG0480022299.01.T01:CDS
ACTCAAACCTCAATGACAAA+AGG 0.505232 4:+70842511 MsG0480022299.01.T01:CDS
ATTGAGGTTTGAGTGAAGCC+AGG 0.506250 4:-70842502 None:intergenic
AACCTCAATGACAAAAGGTA+AGG 0.507566 4:+70842516 MsG0480022299.01.T01:CDS
GATGGAAGAATTAGAAGAAG+AGG 0.514502 4:-70842048 None:intergenic
AGACAAATTTGGAGCCACCT+TGG 0.518797 4:+70841316 MsG0480022299.01.T01:CDS
GAGACGGTAGCGGTGGTGAC+CGG 0.523844 4:+70841083 MsG0480022299.01.T01:CDS
GGTGGTGACCGGAGGTAACA+AGG 0.525486 4:+70841094 MsG0480022299.01.T01:CDS
TCCAAATTTGTCTTTGAAGG+AGG 0.528089 4:-70841306 None:intergenic
GTGGTCGAAGGAGACGGTAG+CGG 0.531902 4:+70841073 MsG0480022299.01.T01:CDS
TGAATGAAGGTGGTGGTCGA+AGG 0.543250 4:+70841061 MsG0480022299.01.T01:intron
GCATAGTCTGTCCAATATGA+TGG 0.543911 4:-70842364 None:intergenic
TACCTGGTTGAGCAAAGTGC+AGG 0.547617 4:-70840952 None:intergenic
AACATTGAGAATACGTGTGA+TGG 0.548769 4:-70842066 None:intergenic
AAATGCATACTCAAAAGTGT+TGG 0.552148 4:+70842405 MsG0480022299.01.T01:CDS
AATCAGCATCTGAGACATCA+AGG 0.556283 4:-70841265 None:intergenic
AGAATTAGCAACTTGTTGGA+AGG 0.559112 4:-70842644 None:intergenic
TTTCCAGTGGGCAAGTGGTG+TGG 0.562735 4:-70842595 None:intergenic
GAAAAGAATTCTAGAGAGTG+AGG 0.571043 4:+70842258 MsG0480022299.01.T01:CDS
CCAGTGGGCAAGTGGTGTGG+CGG 0.576832 4:-70842592 None:intergenic
ATTAGCAACTTGTTGGAAGG+TGG 0.582292 4:-70842641 None:intergenic
GAAGAGGAGCAACGAAAGAG+GGG 0.583471 4:-70842032 None:intergenic
TCAATGTTAGCTCAAGACTT+GGG 0.584941 4:+70842081 MsG0480022299.01.T01:CDS
ATGGAACATGGAAGAGTCAA+GGG 0.592718 4:+70842338 MsG0480022299.01.T01:CDS
TTGAGGTTTGAGTGAAGCCA+GGG 0.599643 4:-70842501 None:intergenic
GTCGAAGGAGACGGTAGCGG+TGG 0.601525 4:+70841076 MsG0480022299.01.T01:CDS
AATGGAACATGGAAGAGTCA+AGG 0.605080 4:+70842337 MsG0480022299.01.T01:CDS
GTTGAGCAAAGTGCAGGAGA+AGG 0.605589 4:-70840946 None:intergenic
CATGGTCCACTGAATTCTCG+TGG 0.607377 4:-70841950 None:intergenic
GAGATGTGAGAAATGGAACA+TGG 0.612549 4:+70842326 MsG0480022299.01.T01:CDS
AATACATACGAGAATATCCA+AGG 0.618479 4:-70841333 None:intergenic
ACCTCAATGACAAAAGGTAA+GGG 0.629438 4:+70842517 MsG0480022299.01.T01:CDS
TGGCGGAAGCAACACAAGGA+TGG 0.632160 4:-70842575 None:intergenic
ACGGTAGCGGTGGTGACCGG+AGG 0.643306 4:+70841086 MsG0480022299.01.T01:CDS
GTGGTGACCGGAGGTAACAA+GGG 0.643825 4:+70841095 MsG0480022299.01.T01:CDS
ACTAGAAAGTGAACATGATG+AGG 0.645794 4:-70841242 None:intergenic
AAGGTGGTGGTCGAAGGAGA+CGG 0.656000 4:+70841067 MsG0480022299.01.T01:intron
GAACATGATGAGGTGCAACA+AGG 0.658083 4:-70841232 None:intergenic
TGAGCTCCACGAGAATTCAG+TGG 0.667471 4:+70841944 MsG0480022299.01.T01:CDS
GGTGTGGCGGAAGCAACACA+AGG 0.673747 4:-70842579 None:intergenic
GAACATGGAAGAGTCAAGGG+TGG 0.718135 4:+70842341 MsG0480022299.01.T01:CDS
ACATACGAGAATATCCAAGG+TGG 0.779700 4:-70841330 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAATTATA+TGG + Chr4:70842174-70842193 MsG0480022299.01.T01:intron 0.0%
!! AAATTAATCAAACATATATA+TGG - Chr4:70841013-70841032 None:intergenic 10.0%
!! TTTATGTGAATAAAAAATTA+TGG - Chr4:70841857-70841876 None:intergenic 10.0%
!! AAGTAAATTCATGAATTATT+AGG - Chr4:70842123-70842142 None:intergenic 15.0%
!! AATAAAATTGAATAAGTAGA+AGG - Chr4:70841364-70841383 None:intergenic 15.0%
!! TAAATATTATTATATGCAGA+AGG + Chr4:70842219-70842238 MsG0480022299.01.T01:intron 15.0%
!!! AATTAATTTTTTATGTGATC+AGG + Chr4:70841896-70841915 MsG0480022299.01.T01:intron 15.0%
!!! AAAAGCAAAAAATATTGACT+TGG + Chr4:70841577-70841596 MsG0480022299.01.T01:intron 20.0%
!!! AAAGCAAAAAATATTGACTT+GGG + Chr4:70841578-70841597 MsG0480022299.01.T01:intron 20.0%
!!! CACATAAATATGTTTTTGAA+AGG + Chr4:70841869-70841888 MsG0480022299.01.T01:intron 20.0%
! AATGACACATTTATTACTAG+AGG - Chr4:70841425-70841444 None:intergenic 25.0%
! AGTAACTAATATGGATAGAT+CGG + Chr4:70841610-70841629 MsG0480022299.01.T01:intron 25.0%
! ATTCATGAATTTACTTTACC+AGG + Chr4:70842127-70842146 MsG0480022299.01.T01:intron 25.0%
! CATAATTCGAGTAACTAATA+TGG + Chr4:70841601-70841620 MsG0480022299.01.T01:intron 25.0%
! GTCATGAAAACAAATTTCTA+TGG + Chr4:70841981-70842000 MsG0480022299.01.T01:CDS 25.0%
! GTTTCACAATGATAAACATT+TGG + Chr4:70841467-70841486 MsG0480022299.01.T01:intron 25.0%
! TATTTGTGCTAAATGAATGA+AGG + Chr4:70841048-70841067 MsG0480022299.01.T01:intron 25.0%
! TTATCATTGTGAAACTAAGA+GGG - Chr4:70841462-70841481 None:intergenic 25.0%
! TTTACCAGGTTAATATAAGT+TGG + Chr4:70842141-70842160 MsG0480022299.01.T01:intron 25.0%
! TTTATCATTGTGAAACTAAG+AGG - Chr4:70841463-70841482 None:intergenic 25.0%
AATACATACGAGAATATCCA+AGG - Chr4:70841336-70841355 None:intergenic 30.0%
ATAGTAGGATTGAAAAGATG+AGG - Chr4:70840978-70840997 None:intergenic 30.0%
CTTTGGTCAAAAAATTGTCT+AGG - Chr4:70841816-70841835 None:intergenic 30.0%
TGGCATTAAATGTGTATAGT+AGG - Chr4:70840993-70841012 None:intergenic 30.0%
! AAATGCATACTCAAAAGTGT+TGG + Chr4:70842405-70842424 MsG0480022299.01.T01:CDS 30.0%
! GTTTAGAATTAGCAACTTGT+TGG - Chr4:70842651-70842670 None:intergenic 30.0%
! TTTCTAAGAGATGTGAGAAA+TGG + Chr4:70842319-70842338 MsG0480022299.01.T01:CDS 30.0%
!! AACCAAGATAGTGTTGATAA+TGG + Chr4:70841718-70841737 MsG0480022299.01.T01:intron 30.0%
!! ACCAAGATAGTGTTGATAAT+GGG + Chr4:70841719-70841738 MsG0480022299.01.T01:intron 30.0%
AACATTGAGAATACGTGTGA+TGG - Chr4:70842069-70842088 None:intergenic 35.0%
AACCTCAATGACAAAAGGTA+AGG + Chr4:70842516-70842535 MsG0480022299.01.T01:CDS 35.0%
ACCCATTATCAACACTATCT+TGG - Chr4:70841723-70841742 None:intergenic 35.0%
ACCTCAATGACAAAAGGTAA+GGG + Chr4:70842517-70842536 MsG0480022299.01.T01:CDS 35.0%
ACTAGAAAGTGAACATGATG+AGG - Chr4:70841245-70841264 None:intergenic 35.0%
ACTCAAACCTCAATGACAAA+AGG + Chr4:70842511-70842530 MsG0480022299.01.T01:CDS 35.0%
GACACATTTATTACTAGAGG+TGG - Chr4:70841422-70841441 None:intergenic 35.0%
GATGGAAGAATTAGAAGAAG+AGG - Chr4:70842051-70842070 None:intergenic 35.0%
GTGACCAACTTATATTAACC+TGG - Chr4:70842148-70842167 None:intergenic 35.0%
TCAATGTTAGCTCAAGACTT+GGG + Chr4:70842081-70842100 MsG0480022299.01.T01:CDS 35.0%
TCCTCCTTCAAAGACAAATT+TGG + Chr4:70841305-70841324 MsG0480022299.01.T01:CDS 35.0%
TTGTGCTAAATGAATGAAGG+TGG + Chr4:70841051-70841070 MsG0480022299.01.T01:intron 35.0%
! AGCAAGAAGAATTTTCCAGT+GGG - Chr4:70842610-70842629 None:intergenic 35.0%
! CAACACTATCTTGGTTTGAA+AGG - Chr4:70841714-70841733 None:intergenic 35.0%
! GAAAAGAATTCTAGAGAGTG+AGG + Chr4:70842258-70842277 MsG0480022299.01.T01:CDS 35.0%
! TCCAAATTTGTCTTTGAAGG+AGG - Chr4:70841309-70841328 None:intergenic 35.0%
! TTTTCATGACGTTTTCAGCA+TGG - Chr4:70841971-70841990 None:intergenic 35.0%
!! AGAATTAGCAACTTGTTGGA+AGG - Chr4:70842647-70842666 None:intergenic 35.0%
AATGGAACATGGAAGAGTCA+AGG + Chr4:70842337-70842356 MsG0480022299.01.T01:CDS 40.0%
ACATACGAGAATATCCAAGG+TGG - Chr4:70841333-70841352 None:intergenic 40.0%
ACTGCTAGAGACAAGCAAAA+AGG + Chr4:70841173-70841192 MsG0480022299.01.T01:CDS 40.0%
AGTGCAGGAGAAGGAAAATA+AGG - Chr4:70840940-70840959 None:intergenic 40.0%
AGTGCCTCTATAAGCAACTT+AGG - Chr4:70842008-70842027 None:intergenic 40.0%
ATGGAACATGGAAGAGTCAA+GGG + Chr4:70842338-70842357 MsG0480022299.01.T01:CDS 40.0%
CTCAATGTTAGCTCAAGACT+TGG + Chr4:70842080-70842099 MsG0480022299.01.T01:CDS 40.0%
CTTGAAGGAAGAAGAGATCA+AGG + Chr4:70842282-70842301 MsG0480022299.01.T01:CDS 40.0%
GAGATGTGAGAAATGGAACA+TGG + Chr4:70842326-70842345 MsG0480022299.01.T01:CDS 40.0%
GCATAGTCTGTCCAATATGA+TGG - Chr4:70842367-70842386 None:intergenic 40.0%
GGAAGAAGAGATCAAGGAAA+TGG + Chr4:70842288-70842307 MsG0480022299.01.T01:CDS 40.0%
GGAGAAGGAAAATAAGGTTC+TGG - Chr4:70840934-70840953 None:intergenic 40.0%
GGCTCCAAATTTGTCTTTGA+AGG - Chr4:70841312-70841331 None:intergenic 40.0%
TAGAGACAAGCAAAAAGGAG+AGG + Chr4:70841178-70841197 MsG0480022299.01.T01:CDS 40.0%
TATGCAGAAGGTGACAAACT+TGG + Chr4:70842231-70842250 MsG0480022299.01.T01:intron 40.0%
TGCTAAATGAATGAAGGTGG+TGG + Chr4:70841054-70841073 MsG0480022299.01.T01:intron 40.0%
TGGTCCTAAGTTGCTTATAG+AGG + Chr4:70842001-70842020 MsG0480022299.01.T01:CDS 40.0%
TTATGGTCCATGTCTAGTCT+TGG - Chr4:70841840-70841859 None:intergenic 40.0%
! AATCAGCATCTGAGACATCA+AGG - Chr4:70841268-70841287 None:intergenic 40.0%
! GAGCAAGAAGAATTTTCCAG+TGG - Chr4:70842611-70842630 None:intergenic 40.0%
! GATTGAAAAGATGAGGTACC+TGG - Chr4:70840971-70840990 None:intergenic 40.0%
! GTGAAACGTTTTGCTGAGTT+GGG + Chr4:70841134-70841153 MsG0480022299.01.T01:CDS 40.0%
! TGTGAAACGTTTTGCTGAGT+TGG + Chr4:70841133-70841152 MsG0480022299.01.T01:CDS 40.0%
!! ATTAGCAACTTGTTGGAAGG+TGG - Chr4:70842644-70842663 None:intergenic 40.0%
AAGAAGAGGAGCAACGAAAG+AGG - Chr4:70842037-70842056 None:intergenic 45.0%
AGAAGAGGAGCAACGAAAGA+GGG - Chr4:70842036-70842055 None:intergenic 45.0%
ATTGAGGTTTGAGTGAAGCC+AGG - Chr4:70842505-70842524 None:intergenic 45.0%
CCAAAGACCAAGACTAGACA+TGG + Chr4:70841830-70841849 MsG0480022299.01.T01:intron 45.0%
GAACATGATGAGGTGCAACA+AGG - Chr4:70841235-70841254 None:intergenic 45.0%
TAGCTCAAGACTTGGGTCTT+TGG + Chr4:70842088-70842107 MsG0480022299.01.T01:CDS 45.0%
TCTAGAGAGTGAGGACTTGA+AGG + Chr4:70842267-70842286 MsG0480022299.01.T01:CDS 45.0%
TTGAGGTTTGAGTGAAGCCA+GGG - Chr4:70842504-70842523 None:intergenic 45.0%
! AGAATTTTCCAGTGGGCAAG+TGG - Chr4:70842603-70842622 None:intergenic 45.0%
! AGACAAATTTGGAGCCACCT+TGG + Chr4:70841316-70841335 MsG0480022299.01.T01:CDS 45.0%
! GCCCTTACCTTTTGTCATTG+AGG - Chr4:70842521-70842540 None:intergenic 45.0%
! GTCTTTGAAGGAGGATGCAA+AGG - Chr4:70841300-70841319 None:intergenic 45.0%
!! CCATGTCTAGTCTTGGTCTT+TGG - Chr4:70841833-70841852 None:intergenic 45.0%
!!! AGTGTGAACTGTTTTTGCCC+TGG + Chr4:70842484-70842503 MsG0480022299.01.T01:CDS 45.0%
!! ATTAATAATTCATATAAATT+AGG + Chr4:70842442-70842461 MsG0480022299.01.T01:CDS 5.0%
CATGGTCCACTGAATTCTCG+TGG - Chr4:70841953-70841972 None:intergenic 50.0%
GAACATGGAAGAGTCAAGGG+TGG + Chr4:70842341-70842360 MsG0480022299.01.T01:CDS 50.0%
GAAGAGGAGCAACGAAAGAG+GGG - Chr4:70842035-70842054 None:intergenic 50.0%
GCAAAAAGGAGAGGATGCTG+TGG + Chr4:70841187-70841206 MsG0480022299.01.T01:CDS 50.0%
GTCAAGGGTGGCCATCATAT+TGG + Chr4:70842353-70842372 MsG0480022299.01.T01:CDS 50.0%
GTTGAGCAAAGTGCAGGAGA+AGG - Chr4:70840949-70840968 None:intergenic 50.0%
TACCTGGTTGAGCAAAGTGC+AGG - Chr4:70840955-70840974 None:intergenic 50.0%
TGAGCTCCACGAGAATTCAG+TGG + Chr4:70841944-70841963 MsG0480022299.01.T01:CDS 50.0%
! TGAATGAAGGTGGTGGTCGA+AGG + Chr4:70841061-70841080 MsG0480022299.01.T01:intron 50.0%
!! GAGAGCATTCGAGCGCAAAT+AGG + Chr4:70841209-70841228 MsG0480022299.01.T01:CDS 50.0%
CCCAATGCCCTTGTTACCTC+CGG - Chr4:70841105-70841124 None:intergenic 55.0%
CTCCTGCACTTTGCTCAACC+AGG + Chr4:70840950-70840969 MsG0480022299.01.T01:CDS 55.0%
GTGGTGACCGGAGGTAACAA+GGG + Chr4:70841095-70841114 MsG0480022299.01.T01:CDS 55.0%
TGGCGGAAGCAACACAAGGA+TGG - Chr4:70842578-70842597 None:intergenic 55.0%
TTTCCAGTGGGCAAGTGGTG+TGG - Chr4:70842598-70842617 None:intergenic 55.0%
! AAGGTGGTGGTCGAAGGAGA+CGG + Chr4:70841067-70841086 MsG0480022299.01.T01:intron 55.0%
! ACCGGAGGTAACAAGGGCAT+TGG + Chr4:70841101-70841120 MsG0480022299.01.T01:CDS 55.0%
!! CCGGAGGTAACAAGGGCATT+GGG + Chr4:70841102-70841121 MsG0480022299.01.T01:CDS 55.0%
GGTGGTGACCGGAGGTAACA+AGG + Chr4:70841094-70841113 MsG0480022299.01.T01:CDS 60.0%
GTGGTCGAAGGAGACGGTAG+CGG + Chr4:70841073-70841092 MsG0480022299.01.T01:CDS 60.0%
! GGTGTGGCGGAAGCAACACA+AGG - Chr4:70842582-70842601 None:intergenic 60.0%
CCAGTGGGCAAGTGGTGTGG+CGG - Chr4:70842595-70842614 None:intergenic 65.0%
! GAGACGGTAGCGGTGGTGAC+CGG + Chr4:70841083-70841102 MsG0480022299.01.T01:CDS 65.0%
! GTCGAAGGAGACGGTAGCGG+TGG + Chr4:70841076-70841095 MsG0480022299.01.T01:CDS 65.0%
CCGCCACACCACTTGCCCAC+TGG + Chr4:70842592-70842611 MsG0480022299.01.T01:CDS 70.0%
! ACGGTAGCGGTGGTGACCGG+AGG + Chr4:70841086-70841105 MsG0480022299.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 70840925 70842675 70840925 ID=MsG0480022299.01;Name=MsG0480022299.01
Chr4 mRNA 70840925 70842675 70840925 ID=MsG0480022299.01.T01;Parent=MsG0480022299.01;Name=MsG0480022299.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0.66|0.75|4|0|318
Chr4 exon 70840925 70840971 70840925 ID=MsG0480022299.01.T01:exon:5551;Parent=MsG0480022299.01.T01
Chr4 exon 70841070 70841346 70841070 ID=MsG0480022299.01.T01:exon:5550;Parent=MsG0480022299.01.T01
Chr4 exon 70841918 70842112 70841918 ID=MsG0480022299.01.T01:exon:5549;Parent=MsG0480022299.01.T01
Chr4 exon 70842238 70842675 70842238 ID=MsG0480022299.01.T01:exon:5548;Parent=MsG0480022299.01.T01
Chr4 CDS 70840925 70840971 70840925 ID=MsG0480022299.01.T01:cds;Parent=MsG0480022299.01.T01
Chr4 CDS 70841070 70841346 70841070 ID=MsG0480022299.01.T01:cds;Parent=MsG0480022299.01.T01
Chr4 CDS 70841918 70842112 70841918 ID=MsG0480022299.01.T01:cds;Parent=MsG0480022299.01.T01
Chr4 CDS 70842238 70842675 70842238 ID=MsG0480022299.01.T01:cds;Parent=MsG0480022299.01.T01
Gene Sequence

>MsG0480022299.01.T01

ATGGAGCCAGAACCTTATTTTCCTTCTCCTGCACTTTGCTCAACCAGGTGGTGGTCGAAGGAGACGGTAGCGGTGGTGACCGGAGGTAACAAGGGCATTGGGTTTGCTCTTGTGAAACGTTTTGCTGAGTTGGGACTGAGTGTAGTGTTAACTGCTAGAGACAAGCAAAAAGGAGAGGATGCTGTGGAGAGCATTCGAGCGCAAATAGGCCTTGTTGCACCTCATCATGTTCACTTTCTAGTCCTTGATGTCTCAGATGCTGATTCTATTAAAACCTTTGCATCCTCCTTCAAAGACAAATTTGGAGCCACCTTGGATATTCTCGTGAACAATGCAGCTGTATCATTCAATGAGCTCCACGAGAATTCAGTGGACCATGCTGAAAACGTCATGAAAACAAATTTCTATGGTCCTAAGTTGCTTATAGAGGCACTTCTTCCCCTCTTTCGTTGCTCCTCTTCTTCTAATTCTTCCATCACACGTATTCTCAATGTTAGCTCAAGACTTGGGTCTTTGGATAAGGTGACAAACTTGGAAATGAAAAGAATTCTAGAGAGTGAGGACTTGAAGGAAGAAGAGATCAAGGAAATGGTGAGAAAATTTCTAAGAGATGTGAGAAATGGAACATGGAAGAGTCAAGGGTGGCCATCATATTGGACAGACTATGCAGTATCAAAATTGACTCTAAATGCATACTCAAAAGTGTTGGCAAAGAGATATAACATTAATAATTCATATAAATTAGGAAATACAACAAAGTTGATGAGTGTGAACTGTTTTTGCCCTGGCTTCACTCAAACCTCAATGACAAAAGGTAAGGGCACTCACACTGCTGATCAAGCTGCTTCTCTTGCTACCATCCTTGTGTTGCTTCCGCCACACCACTTGCCCACTGGAAAATTCTTCTTGCTCAGAAATAATACCACCTTCCAACAAGTTGCTAATTCTAAACTATGA
Protein sequence

>MsG0480022299.01.T01

MEPEPYFPSPALCSTRWWSKETVAVVTGGNKGIGFALVKRFAELGLSVVLTARDKQKGEDAVESIRAQIGLVAPHHVHFLVLDVSDADSIKTFASSFKDKFGATLDILVNNAAVSFNELHENSVDHAENVMKTNFYGPKLLIEALLPLFRCSSSSNSSITRILNVSSRLGSLDKVTNLEMKRILESEDLKEEEIKEMVRKFLRDVRNGTWKSQGWPSYWTDYAVSKLTLNAYSKVLAKRYNINNSYKLGNTTKLMSVNCFCPGFTQTSMTKGKGTHTADQAASLATILVLLPPHHLPTGKFFLLRNNTTFQQVANSKL*