AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043790.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043790.01.T01 MTR_8g041410 96.330 218 7 1 23 240 25 241 6.57e-155 430
MsG0880043790.01.T01 MTR_3g043750 61.616 99 36 1 36 134 1 97 1.22e-37 127
MsG0880043790.01.T01 MTR_5g088770 51.000 100 48 1 42 140 5 104 1.68e-30 109
MsG0880043790.01.T01 MTR_3g451210 49.505 101 47 3 42 141 32 129 3.12e-24 94.4
MsG0880043790.01.T01 MTR_3g452280 49.505 101 47 3 42 141 32 129 3.12e-24 94.4
MsG0880043790.01.T01 MTR_0526s0020 42.105 76 44 0 56 131 28 103 4.40e-14 70.1
MsG0880043790.01.T01 MTR_4g133540 41.379 87 48 2 41 126 28 112 1.12e-13 65.9
MsG0880043790.01.T01 MTR_2g026040 34.188 117 67 2 11 127 8 114 1.24e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043790.01.T01 AT3G12490 62.500 232 82 2 5 236 4 230 2.46e-99 289
MsG0880043790.01.T01 AT3G12490 67.722 158 49 1 39 196 2 157 1.71e-73 221
MsG0880043790.01.T01 AT5G05110 56.021 191 79 2 42 231 46 232 1.34e-70 216
MsG0880043790.01.T01 AT2G40880 57.843 102 43 0 28 129 22 123 6.39e-39 132
MsG0880043790.01.T01 AT5G12140 51.546 97 47 0 35 131 4 100 7.85e-30 107
MsG0880043790.01.T01 AT5G47550 41.250 80 46 1 55 133 41 120 3.50e-13 64.7

Find 79 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTCGCACTTTATATATA+TGG 0.223546 8:+30713791 MsG0880043790.01.T01:three_prime_UTR
GAGGAAGAAGAAGAATAAAA+AGG 0.227987 8:-30709757 None:intergenic
CTTGGTCACAGTAGCATTAT+AGG 0.244708 8:+30713754 MsG0880043790.01.T01:three_prime_UTR
TATATATAAAGTGCGAGTTT+AGG 0.293773 8:-30713788 None:intergenic
TTCAGATCTTGGTGTGATAA+AGG 0.306420 8:+30711432 MsG0880043790.01.T01:CDS
ATATATAAAGTGCGAGTTTA+GGG 0.321094 8:-30713787 None:intergenic
TTCACTGTTCTAGAATCTTC+TGG 0.334216 8:+30709786 MsG0880043790.01.T01:CDS
GGTGTTGTAGAATTCACTTC+TGG 0.344904 8:+30711219 MsG0880043790.01.T01:intron
TCATTTACCTCTTCAGATCT+TGG 0.349534 8:+30711421 MsG0880043790.01.T01:CDS
AGATCTATGAAGCCAAAGTC+TGG 0.352484 8:+30711332 MsG0880043790.01.T01:CDS
CTCATAGGGCACTAGTGAAT+TGG 0.373021 8:-30712326 None:intergenic
AACTCGCACTTTATATATAT+GGG 0.373236 8:+30713792 MsG0880043790.01.T01:three_prime_UTR
AGTAACCTCATGGAGCTCAT+AGG 0.397298 8:-30712341 None:intergenic
GAAGGAAAGGAAGTGTGCTT+TGG 0.430080 8:-30709681 None:intergenic
GGTGGTGAAAGCACGGGAAC+AGG 0.431902 8:+30711252 MsG0880043790.01.T01:CDS
TTATCAGATGGTCACAAGCC+AGG 0.436965 8:+30712226 MsG0880043790.01.T01:intron
GGGAAGTGGTTGCTCTCATT+CGG 0.442230 8:-30709728 None:intergenic
AGCACATGACCCTCAAGTTC+AGG 0.447338 8:+30712264 MsG0880043790.01.T01:CDS
CATTTGCGCGTGATCGAAAT+CGG 0.448077 8:-30709817 None:intergenic
CTAAACTAGGAATACCTGTT+TGG 0.448700 8:-30709937 None:intergenic
GCACGGGAACAGGTTGTTGC+TGG 0.454927 8:+30711262 MsG0880043790.01.T01:CDS
TCAGATCTTGGTGTGATAAA+GGG 0.457739 8:+30711433 MsG0880043790.01.T01:CDS
TGTTACTTACTTAGTAATGA+AGG 0.461854 8:-30709699 None:intergenic
CTGCTTCCATCTGATTAAGA+TGG 0.471542 8:-30713707 None:intergenic
CGATTTCGATCACGCGCAAA+TGG 0.481741 8:+30709818 MsG0880043790.01.T01:CDS
CTTGAGAAGCAAGTTAAACT+TGG 0.487025 8:-30713619 None:intergenic
CTTGCTTCTCAAGGTCAAGC+GGG 0.490732 8:+30713629 MsG0880043790.01.T01:CDS
AAGTTCTTTAAAGTTCATCC+AGG 0.491331 8:-30711362 None:intergenic
TGATCAACACAACACCAAAC+AGG 0.497271 8:+30709923 MsG0880043790.01.T01:CDS
GTAACCTCATGGAGCTCATA+GGG 0.500442 8:-30712340 None:intergenic
ACTTCTGGAGTTTGCAAGGG+TGG 0.514029 8:+30711234 MsG0880043790.01.T01:CDS
CCTAGTCCTACTATTAAGCT+TGG 0.514081 8:+30713736 MsG0880043790.01.T01:exon
TGAACTTGAGGGTCATGTGC+TGG 0.515021 8:-30712262 None:intergenic
CAAGTTTAACTTGCTTCTCA+AGG 0.515944 8:+30713620 MsG0880043790.01.T01:CDS
CTAGTGAATTGGACCTCTGT+TGG 0.516530 8:-30712315 None:intergenic
AGTAGCATTATAGGCCTGCT+TGG 0.517809 8:+30713763 MsG0880043790.01.T01:three_prime_UTR
CTGTGACCAAGCTTAATAGT+AGG 0.519301 8:-30713742 None:intergenic
TAACTTCCATCTTAATCAGA+TGG 0.525361 8:+30713701 MsG0880043790.01.T01:CDS
ATTCACTTCTGGAGTTTGCA+AGG 0.527496 8:+30711230 MsG0880043790.01.T01:CDS
AGAAGAGAAGTTCAAGGTAG+AGG 0.530018 8:+30713659 MsG0880043790.01.T01:CDS
TACTCTCGAGGCTATTGATG+CGG 0.531772 8:+30711300 MsG0880043790.01.T01:CDS
TTGCTGCATCCTGAACTTGA+GGG 0.533051 8:-30712273 None:intergenic
CTTACTTAGTAATGAAGGAA+AGG 0.538266 8:-30709694 None:intergenic
CCTTTGCATCAGTAACCTCA+TGG 0.540940 8:-30712351 None:intergenic
CTTACTGAGTTCAAGCATGC+TGG 0.544063 8:+30711382 MsG0880043790.01.T01:CDS
TTCACTTCTGGAGTTTGCAA+GGG 0.544396 8:+30711231 MsG0880043790.01.T01:CDS
GGGGAATCGTGAATACCTCC+GGG 0.546261 8:-30709852 None:intergenic
GCTGGAACAGACTGCCACCC+TGG 0.547890 8:-30712244 None:intergenic
TGAATTGGACCTCTGTTGGA+TGG 0.553529 8:-30712311 None:intergenic
TTGCAAGGGTGGTGAAAGCA+CGG 0.554617 8:+30711245 MsG0880043790.01.T01:CDS
ACAGAAAGAAGAGAAGTTCA+AGG 0.554921 8:+30713653 MsG0880043790.01.T01:CDS
TTTGCTGCATCCTGAACTTG+AGG 0.555812 8:-30712274 None:intergenic
ACTCTCGAGGCTATTGATGC+GGG 0.561315 8:+30711301 MsG0880043790.01.T01:CDS
TTGTTTAGATATATGTAACA+AGG 0.561962 8:-30713871 None:intergenic
TGCGAGTTTAGGGTCCAAGC+AGG 0.564625 8:-30713777 None:intergenic
GATCTATGAAGCCAAAGTCT+GGG 0.570925 8:+30711333 MsG0880043790.01.T01:CDS
CCATGAGGTTACTGATGCAA+AGG 0.575167 8:+30712351 MsG0880043790.01.T01:CDS
TATCAGATGGTCACAAGCCA+GGG 0.588979 8:+30712227 MsG0880043790.01.T01:intron
AGATCTGAAGAGGTAAATGA+TGG 0.591467 8:-30711418 None:intergenic
TATCACACCAAGATCTGAAG+AGG 0.592973 8:-30711428 None:intergenic
CAAATGGCCACTACACTCCC+CGG 0.593338 8:+30709834 MsG0880043790.01.T01:CDS
CCAAAGTCTGGGTAAAACCC+TGG 0.593767 8:+30711344 MsG0880043790.01.T01:CDS
GAGTTCAAGCATGCTGGTGA+TGG 0.594970 8:+30711388 MsG0880043790.01.T01:CDS
CCAAGCTTAATAGTAGGACT+AGG 0.600613 8:-30713736 None:intergenic
AATACCTCCGGGGAGTGTAG+TGG 0.601929 8:-30709841 None:intergenic
AGTTCTTTAAAGTTCATCCA+GGG 0.602713 8:-30711361 None:intergenic
ACTTGCTTCTCAAGGTCAAG+CGG 0.606587 8:+30713628 MsG0880043790.01.T01:CDS
TGCAAGGGTGGTGAAAGCAC+GGG 0.606644 8:+30711246 MsG0880043790.01.T01:CDS
TGTTTAGATATATGTAACAA+GGG 0.614762 8:-30713870 None:intergenic
GGTTACTGATGCAAAGGCTG+AGG 0.616960 8:+30712357 MsG0880043790.01.T01:CDS
TTGCTTCTCAAGGTCAAGCG+GGG 0.670149 8:+30713630 MsG0880043790.01.T01:CDS
CAGATGGTCACAAGCCAGGG+TGG 0.683786 8:+30712230 MsG0880043790.01.T01:intron
CTAGAACAGTGAATATAGCG+AGG 0.693332 8:-30709776 None:intergenic
ACTGCATCATCTTACTCTCG+AGG 0.693606 8:+30711288 MsG0880043790.01.T01:CDS
GAGGTGCACAAGAATAACGA+AGG 0.697526 8:+30713678 MsG0880043790.01.T01:CDS
CTATTAAGACCATCCAACAG+AGG 0.714864 8:+30712302 MsG0880043790.01.T01:CDS
AGTGCCCTATGAGCTCCATG+AGG 0.746789 8:+30712336 MsG0880043790.01.T01:CDS
ATGGCCACTACACTCCCCGG+AGG 0.770422 8:+30709837 MsG0880043790.01.T01:CDS
GGGAATCGTGAATACCTCCG+GGG 0.776720 8:-30709851 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATAATATACAAAATAA+AGG - Chr8:30712665-30712684 None:intergenic 10.0%
!! ATGATAATATACAAAATAAA+GGG - Chr8:30712664-30712683 None:intergenic 10.0%
!! TAATAATAAAAGTGAAAATT+AGG + Chr8:30712508-30712527 MsG0880043790.01.T01:intron 10.0%
!! AAAAAAATTGACAATTAGAA+AGG - Chr8:30711557-30711576 None:intergenic 15.0%
!! AAAAAATTGACAATTAGAAA+GGG - Chr8:30711556-30711575 None:intergenic 15.0%
!! GTTAATAACTATGATTATAA+TGG - Chr8:30712085-30712104 None:intergenic 15.0%
!! TGATAATATACAAAATAAAG+GGG - Chr8:30712663-30712682 None:intergenic 15.0%
!!! AATTGTTTTATTATAAGCTA+TGG + Chr8:30710230-30710249 MsG0880043790.01.T01:intron 15.0%
!!! ATTATTACTTTTTACATACA+GGG + Chr8:30713196-30713215 MsG0880043790.01.T01:intron 15.0%
!!! CTTTTTACTTATAAAATAAC+AGG - Chr8:30712053-30712072 None:intergenic 15.0%
!!! TAACTTCAAATGTTTAAAAT+AGG - Chr8:30713294-30713313 None:intergenic 15.0%
!!! TATTATTACTTTTTACATAC+AGG + Chr8:30713195-30713214 MsG0880043790.01.T01:intron 15.0%
!!! TTTTTTTTCTTCAAATTTCA+AGG + Chr8:30711606-30711625 MsG0880043790.01.T01:intron 15.0%
!! AAGATAATATTACCTTTCAT+TGG - Chr8:30711725-30711744 None:intergenic 20.0%
!! ACATGTTTGATACAAAAATA+AGG + Chr8:30710921-30710940 MsG0880043790.01.T01:intron 20.0%
!! AGTTGCTTAAAATAAAATCA+TGG + Chr8:30713098-30713117 MsG0880043790.01.T01:intron 20.0%
!! AGTTGTTTGTGATTATAATA+AGG + Chr8:30709972-30709991 MsG0880043790.01.T01:intron 20.0%
!! ATGTTTGATACAAAAATAAG+GGG + Chr8:30710923-30710942 MsG0880043790.01.T01:intron 20.0%
!! CATGTTTGATACAAAAATAA+GGG + Chr8:30710922-30710941 MsG0880043790.01.T01:intron 20.0%
!! GTAAATTCCAGATAAAATTT+AGG - Chr8:30712021-30712040 None:intergenic 20.0%
!! GTAATAATAAACAAAGAAAG+AGG - Chr8:30713184-30713203 None:intergenic 20.0%
!! GTTTATCAGTTAAAATTGTT+TGG + Chr8:30712809-30712828 MsG0880043790.01.T01:intron 20.0%
!! TAAATAAACTCCATATCTTT+GGG - Chr8:30713483-30713502 None:intergenic 20.0%
!! TACAACAAAAGGTAAAAATA+AGG + Chr8:30710204-30710223 MsG0880043790.01.T01:intron 20.0%
!! TCTCAACTTAAATATTCAAT+AGG - Chr8:30713350-30713369 None:intergenic 20.0%
!! TGTTTAGATATATGTAACAA+GGG - Chr8:30713873-30713892 None:intergenic 20.0%
!! TTGTTTAGATATATGTAACA+AGG - Chr8:30713874-30713893 None:intergenic 20.0%
!! TTTATGAAATTAGCAAAAGT+AGG - Chr8:30710746-30710765 None:intergenic 20.0%
!!! ACAATTTTAACTGATAAACT+AGG - Chr8:30712808-30712827 None:intergenic 20.0%
!!! AGTTGAGAAATTTTAACAAT+AGG + Chr8:30713362-30713381 MsG0880043790.01.T01:intron 20.0%
!!! ATTACGTAAATGAGTTTTTT+TGG - Chr8:30710844-30710863 None:intergenic 20.0%
!!! GGTATATTTTTTTATTTTCG+AGG + Chr8:30711028-30711047 MsG0880043790.01.T01:intron 20.0%
!!! TATATTTTTTACAACACCAA+CGG - Chr8:30710679-30710698 None:intergenic 20.0%
!!! TATTAGCTTTTTACAAAACT+TGG - Chr8:30712493-30712512 None:intergenic 20.0%
!!! TTACGTAAATGAGTTTTTTT+GGG - Chr8:30710843-30710862 None:intergenic 20.0%
!!! TTCTTTATTTCTACAACAAA+AGG + Chr8:30710193-30710212 MsG0880043790.01.T01:intron 20.0%
! AAACTCGCACTTTATATATA+TGG + Chr8:30713791-30713810 MsG0880043790.01.T01:three_prime_UTR 25.0%
! AAATGATCTCATCATTTGAT+GGG + Chr8:30710645-30710664 MsG0880043790.01.T01:intron 25.0%
! AACAAAGAAATGGCAAAATA+GGG + Chr8:30712744-30712763 MsG0880043790.01.T01:intron 25.0%
! AACTCGCACTTTATATATAT+GGG + Chr8:30713792-30713811 MsG0880043790.01.T01:three_prime_UTR 25.0%
! AAGGGGAATATTAAGAAATT+GGG + Chr8:30710940-30710959 MsG0880043790.01.T01:intron 25.0%
! AATAAACGAAACAAGTACAT+TGG - Chr8:30711000-30711019 None:intergenic 25.0%
! AATGTACTTGTTTCGTTTAT+TGG + Chr8:30710999-30711018 MsG0880043790.01.T01:intron 25.0%
! AATGTTATCTTGAATTTGAC+CGG + Chr8:30710518-30710537 MsG0880043790.01.T01:intron 25.0%
! ACCACAAATATAACTCTTTA+CGG - Chr8:30713012-30713031 None:intergenic 25.0%
! ACTGAATGAATAGATAGAAA+AGG + Chr8:30713048-30713067 MsG0880043790.01.T01:intron 25.0%
! AGGAAGAAGAAGAATAAAAA+GGG - Chr8:30709759-30709778 None:intergenic 25.0%
! ATAAAATAACAGGAACCATA+AGG - Chr8:30712043-30712062 None:intergenic 25.0%
! ATACTAATGAGACTTGATAA+TGG - Chr8:30713394-30713413 None:intergenic 25.0%
! ATATATAAAGTGCGAGTTTA+GGG - Chr8:30713790-30713809 None:intergenic 25.0%
! ATCATATTTAGTGAAACATC+AGG + Chr8:30711925-30711944 MsG0880043790.01.T01:intron 25.0%
! CTAAATAAACTCCATATCTT+TGG - Chr8:30713484-30713503 None:intergenic 25.0%
! CTACATGTATAAACATTAGT+GGG - Chr8:30710329-30710348 None:intergenic 25.0%
! CTCATTTACGTAATAATGTT+CGG + Chr8:30710850-30710869 MsG0880043790.01.T01:intron 25.0%
! TAAATGATCTCATCATTTGA+TGG + Chr8:30710644-30710663 MsG0880043790.01.T01:intron 25.0%
! TAAGGGGAATATTAAGAAAT+TGG + Chr8:30710939-30710958 MsG0880043790.01.T01:intron 25.0%
! TATATATAAAGTGCGAGTTT+AGG - Chr8:30713791-30713810 None:intergenic 25.0%
! TATTTCTTGATATGATCAAC+AGG + Chr8:30711479-30711498 MsG0880043790.01.T01:intron 25.0%
! TCCATTGAAAATGTAGAAAA+AGG + Chr8:30711980-30711999 MsG0880043790.01.T01:intron 25.0%
! TCTACATGTATAAACATTAG+TGG - Chr8:30710330-30710349 None:intergenic 25.0%
! TGATCATATCAAGAAATAAG+CGG - Chr8:30711477-30711496 None:intergenic 25.0%
! TTTATCCAATCAATACAACA+CGG - Chr8:30710879-30710898 None:intergenic 25.0%
!! ATTGACTTTGACTTATTTCT+TGG + Chr8:30710041-30710060 MsG0880043790.01.T01:intron 25.0%
!! TACTAATGAGACTTGATAAT+GGG - Chr8:30713393-30713412 None:intergenic 25.0%
!! TATTTTCTTCCTTAACAGAA+CGG - Chr8:30713224-30713243 None:intergenic 25.0%
!! TGTTACTTACTTAGTAATGA+AGG - Chr8:30709702-30709721 None:intergenic 25.0%
!! TTAAACATTTGAAGTTAACG+TGG + Chr8:30713297-30713316 MsG0880043790.01.T01:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - Chr8:30709998-30710017 None:intergenic 25.0%
!! TTCTACATTTTCAATGGAAA+TGG - Chr8:30711978-30711997 None:intergenic 25.0%
!! TTTATCTGGAATTTACCTTA+TGG + Chr8:30712025-30712044 MsG0880043790.01.T01:intron 25.0%
!!! AAAATTGTTTGGTTTGACAA+TGG + Chr8:30712820-30712839 MsG0880043790.01.T01:intron 25.0%
!!! CTAAAACTGTTGATTTTTGT+CGG + Chr8:30711121-30711140 MsG0880043790.01.T01:intron 25.0%
!!! GCTTTTTTTGAACAAAGAAA+TGG + Chr8:30712734-30712753 MsG0880043790.01.T01:intron 25.0%
!!! TTTTTTTGGGTATGAACATT+CGG - Chr8:30710830-30710849 None:intergenic 25.0%
AAATGTAGAAAAAGGCTTGT+AGG + Chr8:30711988-30712007 MsG0880043790.01.T01:intron 30.0%
AAGACACATTTAACAGAATC+TGG - Chr8:30713259-30713278 None:intergenic 30.0%
AAGCTTAATTAAGCAGTATC+TGG + Chr8:30710765-30710784 MsG0880043790.01.T01:intron 30.0%
AATAAGCGGTTTACACAAAA+TGG - Chr8:30711463-30711482 None:intergenic 30.0%
AGAAGAATAAAAAGGGAAGA+AGG - Chr8:30709752-30709771 None:intergenic 30.0%
AGAGATAGTAAATTAGTGAG+TGG + Chr8:30711698-30711717 MsG0880043790.01.T01:intron 30.0%
ATGATTCGCTTATGAAGTAT+GGG + Chr8:30712912-30712931 MsG0880043790.01.T01:intron 30.0%
ATGCTAACACGTAGTAAAAA+CGG - Chr8:30712635-30712654 None:intergenic 30.0%
CTAAAGACAAAATCATGACA+TGG - Chr8:30712567-30712586 None:intergenic 30.0%
CTAGGAAAATGTCATATAGA+AGG + Chr8:30712456-30712475 MsG0880043790.01.T01:intron 30.0%
CTTACTTAGTAATGAAGGAA+AGG - Chr8:30709697-30709716 None:intergenic 30.0%
GAACAAAGAAATGGCAAAAT+AGG + Chr8:30712743-30712762 MsG0880043790.01.T01:intron 30.0%
GAAGAATAAAAAGGGAAGAA+GGG - Chr8:30709751-30709770 None:intergenic 30.0%
GACGTGACAAATAAAGATAT+AGG - Chr8:30711769-30711788 None:intergenic 30.0%
GAGGAAGAAGAAGAATAAAA+AGG - Chr8:30709760-30709779 None:intergenic 30.0%
TAACTTCCATCTTAATCAGA+TGG + Chr8:30713701-30713720 MsG0880043790.01.T01:CDS 30.0%
TATGATTCGCTTATGAAGTA+TGG + Chr8:30712911-30712930 MsG0880043790.01.T01:intron 30.0%
TCATATGAACCAACTAAACT+AGG - Chr8:30709953-30709972 None:intergenic 30.0%
TCCGTAAAGAGTTATATTTG+TGG + Chr8:30713008-30713027 MsG0880043790.01.T01:intron 30.0%
TGGTATTATCAAACATCTGA+AGG - Chr8:30712185-30712204 None:intergenic 30.0%
TTATCCAATCAATACAACAC+GGG - Chr8:30710878-30710897 None:intergenic 30.0%
TTGTCAATTGTGATCTCTAA+AGG + Chr8:30710448-30710467 MsG0880043790.01.T01:intron 30.0%
! ATGTTCATATTTTCAGCTCT+AGG + Chr8:30712438-30712457 MsG0880043790.01.T01:intron 30.0%
! GCCTTTTTCTACATTTTCAA+TGG - Chr8:30711984-30712003 None:intergenic 30.0%
! TGTTTTATAGTCACAACAAC+CGG - Chr8:30710540-30710559 None:intergenic 30.0%
!! AAGTTCTTTAAAGTTCATCC+AGG - Chr8:30711365-30711384 None:intergenic 30.0%
!! AGTTCTTTAAAGTTCATCCA+GGG - Chr8:30711364-30711383 None:intergenic 30.0%
!! GATTATAATAAGGCCTTGTT+TGG + Chr8:30709982-30710001 MsG0880043790.01.T01:intron 30.0%
!!! GTTCTGTTTTTGTTATCAGA+TGG + Chr8:30712214-30712233 MsG0880043790.01.T01:intron 30.0%
!!! TGGTTTGATTTTTGGTCAAT+TGG + Chr8:30710785-30710804 MsG0880043790.01.T01:intron 30.0%
AAAAACAGAACAGCAGAAGA+TGG - Chr8:30712205-30712224 None:intergenic 35.0%
AAGTCAAAGTCAATCCAAAC+AGG - Chr8:30710035-30710054 None:intergenic 35.0%
AATGCAGAGTCTCTTATGTA+TGG - Chr8:30713516-30713535 None:intergenic 35.0%
ACAGAAAGAAGAGAAGTTCA+AGG + Chr8:30713653-30713672 MsG0880043790.01.T01:CDS 35.0%
ACAGGTATTCCTAGTTTAGT+TGG + Chr8:30709941-30709960 MsG0880043790.01.T01:intron 35.0%
ACATAAGAGACTCTGCATTT+GGG + Chr8:30713517-30713536 MsG0880043790.01.T01:intron 35.0%
AGAAATGGCAAAATAGGGTA+AGG + Chr8:30712749-30712768 MsG0880043790.01.T01:intron 35.0%
AGATCTGAAGAGGTAAATGA+TGG - Chr8:30711421-30711440 None:intergenic 35.0%
CTAAACTAGGAATACCTGTT+TGG - Chr8:30709940-30709959 None:intergenic 35.0%
CTTGAGAAGCAAGTTAAACT+TGG - Chr8:30713622-30713641 None:intergenic 35.0%
GACAATTAGAAAGGGACAAA+GGG - Chr8:30711548-30711567 None:intergenic 35.0%
TAAACATTAGTGGGACTGTT+TGG - Chr8:30710320-30710339 None:intergenic 35.0%
TACATAAGAGACTCTGCATT+TGG + Chr8:30713516-30713535 MsG0880043790.01.T01:intron 35.0%
TATCCAATCAATACAACACG+GGG - Chr8:30710877-30710896 None:intergenic 35.0%
TCATTTACCTCTTCAGATCT+TGG + Chr8:30711421-30711440 MsG0880043790.01.T01:CDS 35.0%
TCGTCACATTGAAAGTAAGA+CGG - Chr8:30711082-30711101 None:intergenic 35.0%
TGACAATTAGAAAGGGACAA+AGG - Chr8:30711549-30711568 None:intergenic 35.0%
TGATTCGCTTATGAAGTATG+GGG + Chr8:30712913-30712932 MsG0880043790.01.T01:intron 35.0%
TGTTTCGTTTATTGGATTGC+TGG + Chr8:30711007-30711026 MsG0880043790.01.T01:intron 35.0%
TTAACAACTATGAGCCTGTT+TGG + Chr8:30710018-30710037 MsG0880043790.01.T01:intron 35.0%
TTGCATAGAGATAATGCAAG+CGG + Chr8:30712690-30712709 MsG0880043790.01.T01:intron 35.0%
! ACTCAAATGCACGGATTTTA+AGG - Chr8:30711794-30711813 None:intergenic 35.0%
! AGTGAGGCCTAAATTTTATC+TGG + Chr8:30712011-30712030 MsG0880043790.01.T01:intron 35.0%
! GGATGATTTTGTCCAATATG+TGG + Chr8:30713318-30713337 MsG0880043790.01.T01:intron 35.0%
! TATGCTTTTGCTCTTTCTGT+AGG + Chr8:30712598-30712617 MsG0880043790.01.T01:intron 35.0%
! TCAGATCTTGGTGTGATAAA+GGG + Chr8:30711433-30711452 MsG0880043790.01.T01:CDS 35.0%
! TTCAGATCTTGGTGTGATAA+AGG + Chr8:30711432-30711451 MsG0880043790.01.T01:CDS 35.0%
! TTTTGTCCAATATGTGGAAG+AGG + Chr8:30713324-30713343 MsG0880043790.01.T01:intron 35.0%
!! ATCCTGCTTTAAAGTGAACT+TGG + Chr8:30711860-30711879 MsG0880043790.01.T01:intron 35.0%
!! CAAGTTTAACTTGCTTCTCA+AGG + Chr8:30713620-30713639 MsG0880043790.01.T01:CDS 35.0%
!! CAGCAATTTTGGCAATTTGT+AGG - Chr8:30711827-30711846 None:intergenic 35.0%
!! CTTTAAAGTGAACTTGGAGA+TGG + Chr8:30711866-30711885 MsG0880043790.01.T01:intron 35.0%
!! GCAGTATCTGGTTTGATTTT+TGG + Chr8:30710777-30710796 MsG0880043790.01.T01:intron 35.0%
!! TCTTGGTTTTTCATCACTGA+TGG + Chr8:30713560-30713579 MsG0880043790.01.T01:intron 35.0%
!! TTCACTGTTCTAGAATCTTC+TGG + Chr8:30709786-30709805 MsG0880043790.01.T01:CDS 35.0%
!!! AACTGTTGATTTTTGTCGGA+TGG + Chr8:30711125-30711144 MsG0880043790.01.T01:intron 35.0%
AAACCAAATCCCACTTGAAG+AGG - Chr8:30710593-30710612 None:intergenic 40.0%
AATAGGCCTCTTCCACATAT+TGG - Chr8:30713333-30713352 None:intergenic 40.0%
ACATTGTGCTTATGCTTGCT+TGG + Chr8:30710557-30710576 MsG0880043790.01.T01:intron 40.0%
AGAAGAGAAGTTCAAGGTAG+AGG + Chr8:30713659-30713678 MsG0880043790.01.T01:CDS 40.0%
AGATCATAGCCTCTTCAAGT+GGG + Chr8:30710581-30710600 MsG0880043790.01.T01:intron 40.0%
AGATCTATGAAGCCAAAGTC+TGG + Chr8:30711332-30711351 MsG0880043790.01.T01:CDS 40.0%
AGCAGTCATAACCTATATCC+AGG - Chr8:30712129-30712148 None:intergenic 40.0%
ATAGACACGTGTGATACTTG+AGG - Chr8:30710381-30710400 None:intergenic 40.0%
CATTGTGCTTATGCTTGCTT+GGG + Chr8:30710558-30710577 MsG0880043790.01.T01:intron 40.0%
CCAAGCTTAATAGTAGGACT+AGG - Chr8:30713739-30713758 None:intergenic 40.0%
CCTAGTCCTACTATTAAGCT+TGG + Chr8:30713736-30713755 MsG0880043790.01.T01:exon 40.0%
CGTCACATTGAAAGTAAGAC+GGG - Chr8:30711081-30711100 None:intergenic 40.0%
CTAGAACAGTGAATATAGCG+AGG - Chr8:30709779-30709798 None:intergenic 40.0%
CTATTAAGACCATCCAACAG+AGG + Chr8:30712302-30712321 MsG0880043790.01.T01:CDS 40.0%
CTCAGAACTTAGAAGCTTCT+TGG + Chr8:30713543-30713562 MsG0880043790.01.T01:intron 40.0%
CTGCTTCCATCTGATTAAGA+TGG - Chr8:30713710-30713729 None:intergenic 40.0%
CTGTGACCAAGCTTAATAGT+AGG - Chr8:30713745-30713764 None:intergenic 40.0%
CTTCTGATCACTCAAATGCA+CGG - Chr8:30711803-30711822 None:intergenic 40.0%
CTTGGTCACAGTAGCATTAT+AGG + Chr8:30713754-30713773 MsG0880043790.01.T01:three_prime_UTR 40.0%
GATCTATGAAGCCAAAGTCT+GGG + Chr8:30711333-30711352 MsG0880043790.01.T01:CDS 40.0%
GGATGTCTAAATTGTTGTGC+AGG + Chr8:30713581-30713600 MsG0880043790.01.T01:intron 40.0%
TAAAAAGGGAAGAAGGGAAG+TGG - Chr8:30709745-30709764 None:intergenic 40.0%
TAACACGTAGTAAAAACGGC+TGG - Chr8:30712631-30712650 None:intergenic 40.0%
TATCACACCAAGATCTGAAG+AGG - Chr8:30711431-30711450 None:intergenic 40.0%
TCTAGACCCACAAAGATTGA+CGG + Chr8:30712957-30712976 MsG0880043790.01.T01:intron 40.0%
TGATCAACACAACACCAAAC+AGG + Chr8:30709923-30709942 MsG0880043790.01.T01:CDS 40.0%
TGCATTGAGTTCCTGGATAT+AGG + Chr8:30712115-30712134 MsG0880043790.01.T01:intron 40.0%
TTAGTGAGTGGACCAATGAA+AGG + Chr8:30711710-30711729 MsG0880043790.01.T01:intron 40.0%
TTGATGGGAAAATCAACCGT+TGG + Chr8:30710660-30710679 MsG0880043790.01.T01:intron 40.0%
! AACAGGCTAGCCATTAATAG+GGG + Chr8:30711496-30711515 MsG0880043790.01.T01:intron 40.0%
! ATGCCACATTGTTGAGTTGT+CGG + Chr8:30712405-30712424 MsG0880043790.01.T01:intron 40.0%
! CAACAGGCTAGCCATTAATA+GGG + Chr8:30711495-30711514 MsG0880043790.01.T01:intron 40.0%
! CTTGGAGATGGTGTTTGTTT+TGG + Chr8:30711878-30711897 MsG0880043790.01.T01:intron 40.0%
! GGTGTTGTAGAATTCACTTC+TGG + Chr8:30711146-30711165 MsG0880043790.01.T01:intron 40.0%
! TCAACAGGCTAGCCATTAAT+AGG + Chr8:30711494-30711513 MsG0880043790.01.T01:intron 40.0%
! TCGAGAGAATTTTCAGAGCT+GGG - Chr8:30709876-30709895 None:intergenic 40.0%
! TTCGAGAGAATTTTCAGAGC+TGG - Chr8:30709877-30709896 None:intergenic 40.0%
! TTTTCAATGGAAATGGCGCA+TGG - Chr8:30711971-30711990 None:intergenic 40.0%
!! ATGAGACTTGATAATGGGAG+AGG - Chr8:30713388-30713407 None:intergenic 40.0%
!! ATGATGATGCGCAGCAATTT+TGG - Chr8:30711838-30711857 None:intergenic 40.0%
!! ATTAATAGGGGCGTTTGAAG+GGG + Chr8:30711508-30711527 MsG0880043790.01.T01:intron 40.0%
!! ATTCACTTCTGGAGTTTGCA+AGG + Chr8:30711157-30711176 MsG0880043790.01.T01:intron 40.0%
!! CATTAATAGGGGCGTTTGAA+GGG + Chr8:30711507-30711526 MsG0880043790.01.T01:intron 40.0%
!! CTCCAAGTTCACTTTAAAGC+AGG - Chr8:30711865-30711884 None:intergenic 40.0%
!! GTAGCTATGTTCTTGCTGTT+AGG + Chr8:30713449-30713468 MsG0880043790.01.T01:intron 40.0%
!! TTCACTTCTGGAGTTTGCAA+GGG + Chr8:30711158-30711177 MsG0880043790.01.T01:intron 40.0%
!! TTTTGGGTATGAACATTCGG+AGG - Chr8:30710827-30710846 None:intergenic 40.0%
AAACATCAGGATGCGAGCAT+TGG + Chr8:30711938-30711957 MsG0880043790.01.T01:intron 45.0%
ACACGTGTGATACTTGAGGT+CGG - Chr8:30710377-30710396 None:intergenic 45.0%
ACTGCATCATCTTACTCTCG+AGG + Chr8:30711288-30711307 MsG0880043790.01.T01:CDS 45.0%
ACTTGCTTCTCAAGGTCAAG+CGG + Chr8:30713628-30713647 MsG0880043790.01.T01:CDS 45.0%
AGAGATAATGCAAGCGGATG+AGG + Chr8:30712696-30712715 MsG0880043790.01.T01:intron 45.0%
AGTAACCTCATGGAGCTCAT+AGG - Chr8:30712344-30712363 None:intergenic 45.0%
AGTAGCATTATAGGCCTGCT+TGG + Chr8:30713763-30713782 MsG0880043790.01.T01:three_prime_UTR 45.0%
CAAAAGTAGGCAGTCTTAGC+AGG - Chr8:30710733-30710752 None:intergenic 45.0%
CAACCGACAACTCAACAATG+TGG - Chr8:30712411-30712430 None:intergenic 45.0%
CATTTGCGCGTGATCGAAAT+CGG - Chr8:30709820-30709839 None:intergenic 45.0%
CCATGAGGTTACTGATGCAA+AGG + Chr8:30712351-30712370 MsG0880043790.01.T01:CDS 45.0%
CCTTCAAACGCCCCTATTAA+TGG - Chr8:30711509-30711528 None:intergenic 45.0%
CCTTTGCATCAGTAACCTCA+TGG - Chr8:30712354-30712373 None:intergenic 45.0%
CGTGCATTTGAGTGATCAGA+AGG + Chr8:30711801-30711820 MsG0880043790.01.T01:intron 45.0%
CTAGTGAATTGGACCTCTGT+TGG - Chr8:30712318-30712337 None:intergenic 45.0%
CTTACTGAGTTCAAGCATGC+TGG + Chr8:30711382-30711401 MsG0880043790.01.T01:CDS 45.0%
GAAAAAGGCTTGTAGGAGTG+AGG + Chr8:30711995-30712014 MsG0880043790.01.T01:intron 45.0%
GAAACAGACTCGTGCATAGT+TGG + Chr8:30712773-30712792 MsG0880043790.01.T01:intron 45.0%
GAGATCATAGCCTCTTCAAG+TGG + Chr8:30710580-30710599 MsG0880043790.01.T01:intron 45.0%
GAGGTGCACAAGAATAACGA+AGG + Chr8:30713678-30713697 MsG0880043790.01.T01:CDS 45.0%
GGACACTGTTCCCAAAGATA+TGG + Chr8:30713470-30713489 MsG0880043790.01.T01:intron 45.0%
GTAACCTCATGGAGCTCATA+GGG - Chr8:30712343-30712362 None:intergenic 45.0%
TAAGCGATGCATTGAGTTCC+TGG + Chr8:30712108-30712127 MsG0880043790.01.T01:intron 45.0%
TACAGGGTTCCGTTCTGTTA+AGG + Chr8:30713212-30713231 MsG0880043790.01.T01:intron 45.0%
TACTCTCGAGGCTATTGATG+CGG + Chr8:30711300-30711319 MsG0880043790.01.T01:CDS 45.0%
TAGCCTCTTCAAGTGGGATT+TGG + Chr8:30710587-30710606 MsG0880043790.01.T01:intron 45.0%
TATCAGATGGTCACAAGCCA+GGG + Chr8:30712227-30712246 MsG0880043790.01.T01:intron 45.0%
TGAATTGGACCTCTGTTGGA+TGG - Chr8:30712314-30712333 None:intergenic 45.0%
TGTGATACTTGAGGTCGGTT+TGG - Chr8:30710372-30710391 None:intergenic 45.0%
TTAGTGGGACTGTTTGGAAG+AGG - Chr8:30710314-30710333 None:intergenic 45.0%
TTATCAGATGGTCACAAGCC+AGG + Chr8:30712226-30712245 MsG0880043790.01.T01:intron 45.0%
TTGCTGCATCCTGAACTTGA+GGG - Chr8:30712276-30712295 None:intergenic 45.0%
TTTGCTGCATCCTGAACTTG+AGG - Chr8:30712277-30712296 None:intergenic 45.0%
! CATTCGGAGGAACACGATTT+TGG - Chr8:30710814-30710833 None:intergenic 45.0%
! CGAGAGAATTTTCAGAGCTG+GGG - Chr8:30709875-30709894 None:intergenic 45.0%
! CTCATAGGGCACTAGTGAAT+TGG - Chr8:30712329-30712348 None:intergenic 45.0%
! GAAGGAAAGGAAGTGTGCTT+TGG - Chr8:30709684-30709703 None:intergenic 45.0%
! GAGAGAATTTTCAGAGCTGG+GGG - Chr8:30709874-30709893 None:intergenic 45.0%
!! CCATTAATAGGGGCGTTTGA+AGG + Chr8:30711506-30711525 MsG0880043790.01.T01:intron 45.0%
!!! GGTGTTTGTTTTGGTCAGCA+GGG + Chr8:30711887-30711906 MsG0880043790.01.T01:intron 45.0%
!!! TGGTGTTTGTTTTGGTCAGC+AGG + Chr8:30711886-30711905 MsG0880043790.01.T01:intron 45.0%
ACTCTCGAGGCTATTGATGC+GGG + Chr8:30711301-30711320 MsG0880043790.01.T01:CDS 50.0%
AGCACATGACCCTCAAGTTC+AGG + Chr8:30712264-30712283 MsG0880043790.01.T01:CDS 50.0%
CCAAAGTCTGGGTAAAACCC+TGG + Chr8:30711344-30711363 MsG0880043790.01.T01:CDS 50.0%
CGATTTCGATCACGCGCAAA+TGG + Chr8:30709818-30709837 MsG0880043790.01.T01:CDS 50.0%
CTTGCTTCTCAAGGTCAAGC+GGG + Chr8:30713629-30713648 MsG0880043790.01.T01:CDS 50.0%
GACCCACAAAGATTGACGGA+CGG + Chr8:30712961-30712980 MsG0880043790.01.T01:intron 50.0%
GAGTTCAAGCATGCTGGTGA+TGG + Chr8:30711388-30711407 MsG0880043790.01.T01:CDS 50.0%
GGGAAGTGGTTGCTCTCATT+CGG - Chr8:30709731-30709750 None:intergenic 50.0%
GGTTACTGATGCAAAGGCTG+AGG + Chr8:30712357-30712376 MsG0880043790.01.T01:CDS 50.0%
GTCCGTCCGTCAATCTTTGT+GGG - Chr8:30712966-30712985 None:intergenic 50.0%
TGAACTTGAGGGTCATGTGC+TGG - Chr8:30712265-30712284 None:intergenic 50.0%
TGTCCGTCCGTCAATCTTTG+TGG - Chr8:30712967-30712986 None:intergenic 50.0%
TTGCAAGGGTGGTGAAAGCA+CGG + Chr8:30711245-30711264 MsG0880043790.01.T01:CDS 50.0%
TTGCTTCTCAAGGTCAAGCG+GGG + Chr8:30713630-30713649 MsG0880043790.01.T01:CDS 50.0%
! ACAAAGATTGACGGACGGAC+AGG + Chr8:30712966-30712985 MsG0880043790.01.T01:intron 50.0%
! CCAGGGTTTTACCCAGACTT+TGG - Chr8:30711347-30711366 None:intergenic 50.0%
! GGACCCCGTGTTGTATTGAT+TGG + Chr8:30710871-30710890 MsG0880043790.01.T01:intron 50.0%
!! ACTTCTGGAGTTTGCAAGGG+TGG + Chr8:30711161-30711180 MsG0880043790.01.T01:intron 50.0%
AGTGCCCTATGAGCTCCATG+AGG + Chr8:30712336-30712355 MsG0880043790.01.T01:CDS 55.0%
CAAATGGCCACTACACTCCC+CGG + Chr8:30709834-30709853 MsG0880043790.01.T01:CDS 55.0%
GGGAATCGTGAATACCTCCG+GGG - Chr8:30709854-30709873 None:intergenic 55.0%
GGGGAATCGTGAATACCTCC+GGG - Chr8:30709855-30709874 None:intergenic 55.0%
GGGGGAATCGTGAATACCTC+CGG - Chr8:30709856-30709875 None:intergenic 55.0%
! AATACCTCCGGGGAGTGTAG+TGG - Chr8:30709844-30709863 None:intergenic 55.0%
! TGCAAGGGTGGTGAAAGCAC+GGG + Chr8:30711246-30711265 MsG0880043790.01.T01:CDS 55.0%
! TGCGAGTTTAGGGTCCAAGC+AGG - Chr8:30713780-30713799 None:intergenic 55.0%
CAGATGGTCACAAGCCAGGG+TGG + Chr8:30712230-30712249 MsG0880043790.01.T01:intron 60.0%
GCACGGGAACAGGTTGTTGC+TGG + Chr8:30711262-30711281 MsG0880043790.01.T01:CDS 60.0%
! GGTGGTGAAAGCACGGGAAC+AGG + Chr8:30711252-30711271 MsG0880043790.01.T01:CDS 60.0%
ATGGCCACTACACTCCCCGG+AGG + Chr8:30709837-30709856 MsG0880043790.01.T01:CDS 65.0%
GCTGGAACAGACTGCCACCC+TGG - Chr8:30712247-30712266 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 30709665 30713913 30709665 ID=MsG0880043790.01;Name=MsG0880043790.01
Chr8 mRNA 30709665 30713913 30709665 ID=MsG0880043790.01.T01;Parent=MsG0880043790.01;Name=MsG0880043790.01.T01;_AED=0.48;_eAED=0.48;_QI=67|1|1|1|1|1|4|173|240
Chr8 exon 30709665 30709944 30709665 ID=MsG0880043790.01.T01:exon:7353;Parent=MsG0880043790.01.T01
Chr8 exon 30711229 30711454 30711229 ID=MsG0880043790.01.T01:exon:7354;Parent=MsG0880043790.01.T01
Chr8 exon 30712233 30712378 30712233 ID=MsG0880043790.01.T01:exon:7355;Parent=MsG0880043790.01.T01
Chr8 exon 30713603 30713913 30713603 ID=MsG0880043790.01.T01:exon:7356;Parent=MsG0880043790.01.T01
Chr8 five_prime_UTR 30709665 30709731 30709665 ID=MsG0880043790.01.T01:five_prime_utr;Parent=MsG0880043790.01.T01
Chr8 CDS 30709732 30709944 30709732 ID=MsG0880043790.01.T01:cds;Parent=MsG0880043790.01.T01
Chr8 CDS 30711229 30711454 30711229 ID=MsG0880043790.01.T01:cds;Parent=MsG0880043790.01.T01
Chr8 CDS 30712233 30712378 30712233 ID=MsG0880043790.01.T01:cds;Parent=MsG0880043790.01.T01
Chr8 CDS 30713603 30713740 30713603 ID=MsG0880043790.01.T01:cds;Parent=MsG0880043790.01.T01
Chr8 three_prime_UTR 30713741 30713913 30713741 ID=MsG0880043790.01.T01:three_prime_utr;Parent=MsG0880043790.01.T01
Gene Sequence

>MsG0880043790.01.T01

ATGAGAGCAACCACTTCCCTTCTTCCCTTTTTATTCTTCTTCTTCCTCGCTATATTCACTGTTCTAGAATCTTCTGGTCACTGTTCCGATTTCGATCACGCGCAAATGGCCACTACACTCCCCGGAGGTATTCACGATTCCCCCAGCTCTGAAAATTCTCTCGAAATTGAATCTCTTGCTCGATTCGCTGTTGATCAACACAACACCAAACAGAATTCACTTCTGGAGTTTGCAAGGGTGGTGAAAGCACGGGAACAGGTTGTTGCTGGTACACTGCATCATCTTACTCTCGAGGCTATTGATGCGGGTGAGAAGAAGATCTATGAAGCCAAAGTCTGGGTAAAACCCTGGATGAACTTTAAAGAACTTACTGAGTTCAAGCATGCTGGTGATGGTCATGCACCATCATTTACCTCTTCAGATCTTGGTGTGATAAAGGATGGTCACAAGCCAGGGTGGCAGTCTGTTCCAGCACATGACCCTCAAGTTCAGGATGCAGCAAATCATGCTATTAAGACCATCCAACAGAGGTCCAATTCACTAGTGCCCTATGAGCTCCATGAGGTTACTGATGCAAAGGCTGAGGTCATCGATGATACTGCCAAGTTTAACTTGCTTCTCAAGGTCAAGCGGGGACAGAAAGAAGAGAAGTTCAAGGTAGAGGTGCACAAGAATAACGAAGGTAACTTCCATCTTAATCAGATGGAAGCAGATAGTTCCTAG
Protein sequence

>MsG0880043790.01.T01

MRATTSLLPFLFFFFLAIFTVLESSGHCSDFDHAQMATTLPGGIHDSPSSENSLEIESLARFAVDQHNTKQNSLLEFARVVKAREQVVAGTLHHLTLEAIDAGEKKIYEAKVWVKPWMNFKELTEFKHAGDGHAPSFTSSDLGVIKDGHKPGWQSVPAHDPQVQDAANHAIKTIQQRSNSLVPYELHEVTDAKAEVIDDTAKFNLLLKVKRGQKEEKFKVEVHKNNEGNFHLNQMEADSS*