AlfalfaGEDB | MsG0880045897.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045897.01

KEGG: K10577
GO: -
PFAM: PF00179

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045897.01.T01	XP_013457435.1	100	159	0	0	1	159	1	159	2.66E-116	335
MsG0880045897.01.T02	XP_013457435.1	100	159	0	0	1	159	1	159	2.66E-116	335

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045897.01.T01	Q42551	88.608	158	18	0	2	159	3	160	1.27E-107	306
MsG0880045897.01.T02	Q42551	88.608	158	18	0	2	159	3	160	1.27E-107	306

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045897.01.T01	B7FGV0	100.000	159	0	0	1	159	1	159	1.27e-116	335
MsG0880045897.01.T02	B7FGV0	100.000	159	0	0	1	159	1	159	1.27e-116	335

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047790.01	MsG0880045897.01	0.821942	3.087697e-53	2.548004e-50
MsG0080048185.01	MsG0880045897.01	0.813505	2.474648e-51	1.619025e-48
MsG0180000197.01	MsG0880045897.01	-0.829743	4.339017e-55	4.481257e-52
MsG0180000400.01	MsG0880045897.01	0.808010	3.821476e-50	2.160503e-47
MsG0180000821.01	MsG0880045897.01	-0.831733	1.411901e-55	1.545825e-52
MsG0180001294.01	MsG0880045897.01	-0.803726	3.037685e-49	1.537844e-46
MsG0180002075.01	MsG0880045897.01	-0.806518	7.911982e-50	4.303192e-47
MsG0180003309.01	MsG0880045897.01	0.826179	3.127384e-54	2.911363e-51
MsG0180004689.01	MsG0880045897.01	-0.812341	4.452148e-51	2.823436e-48
MsG0180004793.01	MsG0880045897.01	-0.803330	3.671160e-49	1.839639e-46

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PPI

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Gene1	Gene2	Type
MsG0080047814.01	MsG0880045897.01	PPI
MsG0080047814.01	MsG0880045897.01	PPI
MsG0280010470.01	MsG0880045897.01	PPI
MsG0480023047.01	MsG0880045897.01	PPI
MsG0480023047.01	MsG0880045897.01	PPI
MsG0880044804.01	MsG0880045897.01	PPI
MsG0880044804.01	MsG0880045897.01	PPI
MsG0880045669.01	MsG0880045897.01	PPI
MsG0880045669.01	MsG0880045897.01	PPI
MsG0880045897.01	MsG0280010470.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045897.01.T01	MTR_4g094872	100.000	159	0	0	1	159	1	159	3.22e-120	335
MsG0880045897.01.T01	MTR_5g016630	89.937	159	16	0	1	159	1	159	3.05e-110	310
MsG0880045897.01.T01	MTR_8g468530	42.208	154	82	2	1	154	17	163	3.32e-38	128
MsG0880045897.01.T01	MTR_4g108080	42.208	154	82	2	1	154	1	147	8.47e-38	127
MsG0880045897.01.T01	MTR_1g021150	38.158	152	87	2	4	155	1	145	1.28e-30	108
MsG0880045897.01.T01	MTR_3g062450	36.842	152	89	2	4	155	1	145	2.35e-30	107
MsG0880045897.01.T01	MTR_4g108080	48.077	104	52	1	51	154	46	147	6.04e-30	107
MsG0880045897.01.T01	MTR_8g071040	37.500	152	88	3	4	155	1	145	8.53e-30	106
MsG0880045897.01.T01	MTR_5g075580	36.184	152	90	2	4	155	1	145	1.19e-29	105
MsG0880045897.01.T01	MTR_7g116940	36.184	152	90	2	4	155	1	145	2.12e-29	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045897.01.T01	AT3G57870	88.608	158	18	0	2	159	3	160	1.29e-108	306
MsG0880045897.01.T01	AT2G02760	42.208	154	82	2	1	154	1	147	5.44e-38	127
MsG0880045897.01.T01	AT2G02760	42.208	154	82	2	1	154	1	147	5.44e-38	127
MsG0880045897.01.T01	AT2G02760	42.208	154	82	2	1	154	1	147	5.44e-38	127
MsG0880045897.01.T01	AT2G02760	42.208	154	82	2	1	154	1	147	5.44e-38	127
MsG0880045897.01.T01	AT1G14400	41.558	154	83	2	1	154	1	147	2.07e-37	125
MsG0880045897.01.T01	AT1G14400	41.558	154	83	2	1	154	1	147	2.07e-37	125
MsG0880045897.01.T01	AT5G62540	41.892	148	79	2	1	148	1	141	5.13e-35	119
MsG0880045897.01.T01	AT4G27960	36.184	152	90	2	4	155	1	145	4.61e-30	107
MsG0880045897.01.T01	AT1G64230	36.842	152	89	2	4	155	1	145	4.82e-30	107

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Find 19 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGTTTCGTTGTGATCAT+TGG	0.339649	8:-66129864	MsG0880045897.01.T02:three_prime_UTR
AATAGCACTAGACAATACTT+GGG	0.667894	8:+66129947	None:intergenic
AGCATGAATAGTGAAAACAT+TGG	0.685925	8:+66129822	None:intergenic
ATACCACAGAGTATAAGAGA+AGG	0.605787	8:-66129993	MsG0880045897.01.T02:CDS
ATATTTAACCCTATAGAAAA+AGG	0.358026	8:+66129621	None:intergenic
CAGAGTATAAGAGAAGGGTC+CGG	0.605915	8:-66129987	MsG0880045897.01.T02:CDS
CAGTAATTATCCAATCATTT+AGG	0.256095	8:+66129697	None:intergenic
GACCCTTCTCTTATACTCTG+TGG	0.668386	8:+66129990	None:intergenic
GGTACTGCTTTGCCTGTAGC+CGG	0.457858	8:+66129968	None:intergenic
GTCAACCAATGAATACTTGT+TGG	0.448552	8:-66129754	MsG0880045897.01.T02:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACTAAGATTCATAGCA+GGG	-	Chr8:66131898-66131917	MsG0880045897.01.T02:intron	30.0%
AACACACATGAAACAAAAAG+AGG	+	Chr8:66129867-66129886	None:intergenic	30.0%
AAGAGTTTACCATCCAAATA+AGG	-	Chr8:66129990-66130009	MsG0880045897.01.T02:CDS	30.0%
AAGGTGATATAATGCTAACA+GGG	+	Chr8:66131157-66131176	None:intergenic	30.0%
AATAGCACTAGACAATACTT+GGG	+	Chr8:66134250-66134269	None:intergenic	30.0%
AATGGTGCATTGTGAATAAT+AGG	-	Chr8:66134054-66134073	MsG0880045897.01.T02:intron	30.0%
ACTACTTCCATTCATTTGAT+TGG	+	Chr8:66130500-66130519	None:intergenic	30.0%
ACTCCTAAATTTCATAACCA+AGG	-	Chr8:66130270-66130289	MsG0880045897.01.T02:intron	30.0%
AGCATGAATAGTGAAAACAT+TGG	+	Chr8:66134375-66134394	None:intergenic	30.0%
ATAGGTTCGTTATTACATGT+AGG	-	Chr8:66133716-66133735	MsG0880045897.01.T02:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	66129077	66135139	66129077	ID=MsG0880045897.01;Name=MsG0880045897.01
Chr8	mRNA	66129077	66135139	66129077	ID=MsG0880045897.01.T01;Parent=MsG0880045897.01;Name=MsG0880045897.01.T01;_AED=0.41;_eAED=0.41;_QI=254\|1\|1\|1\|0.5\|0.57\|7\|266\|159
Chr8	exon	66129635	66129812	66129635	ID=MsG0880045897.01.T01:exon:25198;Parent=MsG0880045897.01.T01
Chr8	exon	66129915	66130016	66129915	ID=MsG0880045897.01.T01:exon:25197;Parent=MsG0880045897.01.T01
Chr8	five_prime_UTR	66134886	66135139	66134886	ID=MsG0880045897.01.T01:five_prime_utr;Parent=MsG0880045897.01.T01
Chr8	CDS	66134820	66134885	66134820	ID=MsG0880045897.01.T01:cds;Parent=MsG0880045897.01.T01
Chr8	CDS	66134661	66134744	66134661	ID=MsG0880045897.01.T01:cds;Parent=MsG0880045897.01.T01
Chr8	CDS	66130583	66130735	66130583	ID=MsG0880045897.01.T01:cds;Parent=MsG0880045897.01.T01
Chr8	CDS	66130365	66130478	66130365	ID=MsG0880045897.01.T01:cds;Parent=MsG0880045897.01.T01
Chr8	CDS	66129954	66130016	66129954	ID=MsG0880045897.01.T01:cds;Parent=MsG0880045897.01.T01
Chr8	three_prime_UTR	66129915	66129953	66129915	ID=MsG0880045897.01.T01:three_prime_utr;Parent=MsG0880045897.01.T01
Chr8	three_prime_UTR	66129635	66129812	66129635	ID=MsG0880045897.01.T01:three_prime_utr;Parent=MsG0880045897.01.T01
Chr8	three_prime_UTR	66129077	66129125	66129077	ID=MsG0880045897.01.T01:three_prime_utr;Parent=MsG0880045897.01.T01
Chr8	mRNA	66129077	66135139	66129077	ID=MsG0880045897.01.T02;Parent=MsG0880045897.01;Name=MsG0880045897.01.T02;_AED=0.40;_eAED=0.40;_QI=254\|1\|1\|1\|0.6\|0.66\|6\|368\|159
Chr8	exon	66129635	66130016	66129635	ID=MsG0880045897.01.T02:exon:25200;Parent=MsG0880045897.01.T02
Chr8	five_prime_UTR	66134886	66135139	66134886	ID=MsG0880045897.01.T02:five_prime_utr;Parent=MsG0880045897.01.T02
Chr8	CDS	66134820	66134885	66134820	ID=MsG0880045897.01.T02:cds;Parent=MsG0880045897.01.T02
Chr8	CDS	66134661	66134744	66134661	ID=MsG0880045897.01.T02:cds;Parent=MsG0880045897.01.T02
Chr8	CDS	66130583	66130735	66130583	ID=MsG0880045897.01.T02:cds;Parent=MsG0880045897.01.T02
Chr8	CDS	66130365	66130478	66130365	ID=MsG0880045897.01.T02:cds;Parent=MsG0880045897.01.T02
Chr8	CDS	66129954	66130016	66129954	ID=MsG0880045897.01.T02:cds;Parent=MsG0880045897.01.T02
Chr8	three_prime_UTR	66129635	66129953	66129635	ID=MsG0880045897.01.T02:three_prime_utr;Parent=MsG0880045897.01.T02
Chr8	three_prime_UTR	66129077	66129125	66129077	ID=MsG0880045897.01.T02:three_prime_utr;Parent=MsG0880045897.01.T02

Gene Sequence

>MsG0880045897.01.T02

ATGTCTGGTATTGCTCGTGGTCGGCTCACTGAGGAACGGAAATCGTGGCGGAAGAATCATCCTCATGGTTTTGTTGCGAAACCAGAGACAGCAGCTGATGGTTCTGTGAATTTGATGATTTGGCATTGTACTATTCCTGGAAAAGCTGGGACTGATTGGGAGGGTGGCTACTTCCCACTTACATTACACTTCAGTGAAGACTACCCTAGCAAGCCCCCGAAGTGTAAATTCCCCCAAGGTTTCTTCCACCCCAATGTTTACCCATCAGGAACTGTTTGCTTGTCTATACTCAATGAAGATAGTGGGTGGAGACCAGCCATAACAGTGAAGCAAATTCTTGTGGGCATTCAAGATTTGCTTGACCAGCCAAATCCTGCTGATCCTGCCCAGACAGAAGGCTATCATCTGTTTATCCAGGATACCACAGAGTATAAGAGAAGGGTCCGGCTACAGGCAAAGCAGTACCCAAGTATTGTCTAG

>MsG0880045897.01.T01

Protein sequence

>MsG0880045897.01.T02

MSGIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDTTEYKRRVRLQAKQYPSIV*

>MsG0880045897.01.T01

MSGIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDTTEYKRRVRLQAKQYPSIV*