AlfalfaGEDB | MsG0880044612.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044612.01

KEGG: -
GO: GO:0004672 GO:0004674 GO:0005524 GO:0006468
PFAM: PF07714 PF08276 PF11883

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044612.01.T01	XP_013445593.1	65.01	483	87	6	15	417	354	834	0	560
MsG0880044612.01.T01	XP_013445593.1	85.612	139	16	2	480	618	674	808	8.68E-63	233

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044612.01.T01	Q9ZT07	37.045	494	208	12	10	417	357	833	1.50E-79	271

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044612.01.T01	A0A072TQ29	65.010	483	87	6	15	417	354	834	0.0	560

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000017.01	MsG0880044612.01	0.837965	3.807375e-57	5.026885e-54
MsG0180000200.01	MsG0880044612.01	0.802049	6.745592e-49	3.271757e-46
MsG0180000489.01	MsG0880044612.01	0.829771	4.272450e-55	4.416043e-52
MsG0180000491.01	MsG0880044612.01	0.805129	1.549309e-49	8.132038e-47
MsG0180000549.01	MsG0880044612.01	0.833910	4.063839e-56	4.747552e-53
MsG0180000599.01	MsG0880044612.01	0.838534	2.716671e-57	3.649309e-54
MsG0180000843.01	MsG0880044612.01	0.816874	4.416188e-52	3.166973e-49
MsG0180000942.01	MsG0880044612.01	0.862740	4.089669e-64	1.210465e-60
MsG0180000955.01	MsG0880044612.01	0.800484	1.410670e-48	6.576026e-46
MsG0180000977.01	MsG0880044612.01	0.849174	3.830016e-60	7.200458e-57

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044612.01.T01	MTR_8g465150	65.010	483	87	6	15	417	354	834	0.0	560
MsG0880044612.01.T01	MTR_8g465150	85.612	139	16	2	480	618	674	808	1.05e-66	233
MsG0880044612.01.T01	MTR_8g465160	63.527	499	86	9	4	417	349	836	0.0	544
MsG0880044612.01.T01	MTR_8g465160	84.173	139	18	2	480	618	676	810	1.24e-65	231
MsG0880044612.01.T01	MTR_8g061110	61.167	497	108	7	3	417	231	724	0.0	537
MsG0880044612.01.T01	MTR_8g061110	77.465	142	28	2	477	618	561	698	7.93e-63	221
MsG0880044612.01.T01	MTR_2g011240	38.362	464	177	13	7	385	350	789	6.86e-80	269
MsG0880044612.01.T01	MTR_2g011240	54.545	121	53	2	493	612	670	789	1.95e-30	127
MsG0880044612.01.T01	MTR_4g091860	37.367	471	212	9	20	417	376	836	1.19e-79	269
MsG0880044612.01.T01	MTR_4g091860	57.851	121	48	3	493	612	686	804	5.71e-31	129

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044612.01.T01	AT1G11340	37.045	494	208	12	10	417	357	833	1.53e-80	271
MsG0880044612.01.T01	AT1G11340	52.800	125	56	3	493	616	682	804	3.07e-31	130
MsG0880044612.01.T01	AT4G11900	38.017	484	218	12	1	417	312	780	1.39e-76	259
MsG0880044612.01.T01	AT4G11900	48.413	126	58	4	493	615	635	756	1.08e-24	109
MsG0880044612.01.T01	AT1G11330	36.000	475	205	9	21	417	389	842	2.66e-76	260
MsG0880044612.01.T01	AT1G11330	48.413	126	63	2	493	617	691	815	2.72e-26	115
MsG0880044612.01.T01	AT1G11330	36.211	475	202	10	21	417	389	840	2.82e-76	260
MsG0880044612.01.T01	AT1G11330	48.413	126	63	2	493	617	689	813	2.53e-26	115
MsG0880044612.01.T01	AT4G11900	38.017	484	218	12	1	417	381	849	3.89e-76	259
MsG0880044612.01.T01	AT4G11900	47.581	124	62	3	493	615	704	825	1.55e-24	109

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Find 118 sgRNAs with CRISPR-Local

Find 1002 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCAGCCAAGTCTAAGA+AGG	0.539687	8:-45752838	None:intergenic
AAAGATTTCCTTCTTAGACT+TGG	0.513934	8:+45752830	MsG0880044612.01.T01:CDS
AAATCCGACGTCTTTAGCTT+CGG	0.466855	8:+45763808	MsG0880044612.01.T01:CDS
AAATCGGTACAAGAAGCTGA+TGG	0.645938	8:+45755813	MsG0880044612.01.T01:CDS
AACTTAAGGCTTGGGATACT+TGG	0.313735	8:+45765213	MsG0880044612.01.T01:intron
AAGTTCCGGTCAAGGGTGGG+AGG	0.612446	8:+45752367	MsG0880044612.01.T01:CDS
AATAATCTTGTTAGACTTCT+CGG	0.336217	8:+45752431	MsG0880044612.01.T01:CDS
AATCCTAAAATATCAGATTT+TGG	0.187086	8:+45752776	MsG0880044612.01.T01:CDS
AATGCTGGTGGCTTTGGACT+TGG	0.418768	8:-45754767	None:intergenic
AATGCTGGTGGCTTTGGACT+TGG	0.418768	8:-45765410	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAGACCTAAACATAGC+AGG	+	Chr8:45761320-45761339	MsG0880044612.01.T01:intron	30.0%
AAACAGATGCAGTAAAAAGA+AGG	+	Chr8:45752618-45752637	MsG0880044612.01.T01:intron	30.0%
AAAGATTTCCTTCTTAGACT+TGG	+	Chr8:45752830-45752849	MsG0880044612.01.T01:CDS	30.0%
AAATATGAAGCAGTCATTGT+TGG	-	Chr8:45761194-45761213	None:intergenic	30.0%
AAGATGAAGAGAAATTGGAA+TGG	+	Chr8:45761670-45761689	MsG0880044612.01.T01:intron	30.0%
AATGAGTAGAATATGAAGAC+AGG	-	Chr8:45755585-45755604	None:intergenic	30.0%
AATGTTAATGCATAGAGAGA+AGG	+	Chr8:45758410-45758429	MsG0880044612.01.T01:intron	30.0%
ACAATAATTCTCACCAACAA+TGG	-	Chr8:45753639-45753658	None:intergenic	30.0%
ACAGCTCCATATGATATTAA+TGG	+	Chr8:45763293-45763312	MsG0880044612.01.T01:intron	30.0%
ACATAGATATCTACCTATGA+AGG	-	Chr8:45759787-45759806	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	45750523	45765454	45750523	ID=MsG0880044612.01;Name=MsG0880044612.01
Chr8	mRNA	45750523	45765454	45750523	ID=MsG0880044612.01.T01;Parent=MsG0880044612.01;Name=MsG0880044612.01.T01;_AED=0.49;_eAED=0.55;_QI=0\|0\|0\|1\|1\|1\|9\|0\|618
Chr8	exon	45750523	45750769	45750523	ID=MsG0880044612.01.T01:exon:18481;Parent=MsG0880044612.01.T01
Chr8	exon	45751762	45751893	45751762	ID=MsG0880044612.01.T01:exon:18482;Parent=MsG0880044612.01.T01
Chr8	exon	45752034	45752152	45752034	ID=MsG0880044612.01.T01:exon:18483;Parent=MsG0880044612.01.T01
Chr8	exon	45752320	45752530	45752320	ID=MsG0880044612.01.T01:exon:18484;Parent=MsG0880044612.01.T01
Chr8	exon	45752624	45752856	45752624	ID=MsG0880044612.01.T01:exon:18485;Parent=MsG0880044612.01.T01
Chr8	exon	45754578	45754897	45754578	ID=MsG0880044612.01.T01:exon:18486;Parent=MsG0880044612.01.T01
Chr8	exon	45755689	45755901	45755689	ID=MsG0880044612.01.T01:exon:18487;Parent=MsG0880044612.01.T01
Chr8	exon	45763762	45763909	45763762	ID=MsG0880044612.01.T01:exon:18488;Parent=MsG0880044612.01.T01
Chr8	exon	45765221	45765454	45765221	ID=MsG0880044612.01.T01:exon:18489;Parent=MsG0880044612.01.T01
Chr8	CDS	45750523	45750769	45750523	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45751762	45751893	45751762	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45752034	45752152	45752034	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45752320	45752530	45752320	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45752624	45752856	45752624	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45754578	45754897	45754578	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45755689	45755901	45755689	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45763762	45763909	45763762	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01
Chr8	CDS	45765221	45765454	45765221	ID=MsG0880044612.01.T01:cds;Parent=MsG0880044612.01.T01

Gene Sequence

>MsG0880044612.01.T01

ATGATGTTAGTGAAATCACCTCCACCTGATGTGAACCTGCATATGGATATGGCGGCACAATGTAATCATACTTGCGTCACTGATTGCTCTTGTGTTGCTTATGCTTATGATATATTAGGCAGTAACTGCAAGTTGTGGAAATATCAAGTACCGACTCTCAAGAACACCTCTATTGATATTAATGTTAGTGGTACTAATAAAACAAATTTTTATCTCAAGCTTGCTGGCTCAGAAACACTTATCACAAATTCGAATGCAATTGGAAGGCATGGAAACGGGAAGAGGAATCTACTTGTAATTGTTATTTTGATCTCGTTTCTACTATTTCTTTTACTGCTTTGCCTATTTGTTTACCGGAGTAGAAAGCAAAGAAGAAATGGCGATGATTTGCTAAATTTTGAAGTGGGCATGAGCATGAAAGTTATTGTAGACTCAGACATAGCAGACAAGAGCACAAAGGATAAGAAGAAAGAAGTAAAGTTGCCATTATTCAGTTTTGGTATATTATTGAATGGGGGTGAGGTTGCTGTGAGAAGGCTATCCCGAAGTTCCGGTCAAGGGTGGGAGGAGTTACGAAATGAAGCATTGTTAATTGCAAAACTCCAACATAATAATCTTGTTAGACTTCTCGGCTGTTGCATTGAGCGAGATGAAAAAATGCTTATTTATGAATTCATGCCCAATAAAAGCTTGGATTGTTTTCTCTTCGATGCAGTAAAAAGAAGGATTCTAGATTGGGAAACGCGGGTTCGAATAATTGAAGGCATCGCCCGAGGACTTCTTTATCTGCATCATTATTCTAGGTTCCGGATCATTCATCTAGATTTAAAAGCTAGCAACATATTGTTAGACACCAACATGAATCCTAAAATATCAGATTTTGGAATGGCTAGGATATTTGGTGAGAATTGTGATAAAGATTTCCTTCTTAGACTTGGCTGGGCTTGGGATCTTTGGACCAACGATTCTGGAATGGAGCTAATTGACTCAGAATTGGATGATATCTCCAACAAGCATTTAGTACCGAGATACATCATGAATATCGGACTTCTCTGTGTTCAACAAAATCCACAAGATAGACCAACCATGTCTGATGTTGTATCAATGTTTGGTAATGACACTGCATCCCTTCCAAGTCCAAAGCCACCAGCATTTCAAAATGTGAGAGGTATTGAATATACAAGACTCCCTACACGCATAGAAGAAAACTTTTCTGTGAATGGCATCACAGATTCACTCATTGAAGCAAGAAGAGTTTTAGGATTTATTTTAAATCCAATTCCTTCAATTTCTAAACGAAAAACAGCATCTCGATACGCGTCGCCACCATGGAACAACCGAATCCGGAAACGAACACCGAAACTCACATCGTCCGGTAGTATGAAGAAATCGGTACAAGAAGCTGATGGTGTAGGTTGTATTGGAGCAGTAGCTGGAGTTAATTCAGATAAAATAGTGGTGGTGGAATACAAGAGTGGCTACATGTCTCCTGAATATGCAATGGAAGGCCTTTTCTCAGTTAAATCCGACGTCTTTAGCTTCGGAGTCCTTTTGTTAGAGATTATAAGTGGCAAGAAGAATACTGGTTTTTATCAAACAAGCTCTTTCAATCTTCTTGGATATGCTTGGGATACTTGGACCAAACGATTTCTGGAATGGGAGCTAATTGACTCAGAATTGGATGATATCTCCAACAAAGATTTAGTACCAAGATACGTGAATATTGGACTTCTCTGTGTTCAACAAAGTCCAGATGATAGGCCAACCATGTCTGATGTTGTATCAATGTTTGGTAATGACACTGCATCCCTTCCAAGTCCAAAGCCACCAGCATTTCAAAATGTGAGAGGCATTTAA

Protein sequence

>MsG0880044612.01.T01

MMLVKSPPPDVNLHMDMAAQCNHTCVTDCSCVAYAYDILGSNCKLWKYQVPTLKNTSIDINVSGTNKTNFYLKLAGSETLITNSNAIGRHGNGKRNLLVIVILISFLLFLLLLCLFVYRSRKQRRNGDDLLNFEVGMSMKVIVDSDIADKSTKDKKKEVKLPLFSFGILLNGGEVAVRRLSRSSGQGWEELRNEALLIAKLQHNNLVRLLGCCIERDEKMLIYEFMPNKSLDCFLFDAVKRRILDWETRVRIIEGIARGLLYLHHYSRFRIIHLDLKASNILLDTNMNPKISDFGMARIFGENCDKDFLLRLGWAWDLWTNDSGMELIDSELDDISNKHLVPRYIMNIGLLCVQQNPQDRPTMSDVVSMFGNDTASLPSPKPPAFQNVRGIEYTRLPTRIEENFSVNGITDSLIEARRVLGFILNPIPSISKRKTASRYASPPWNNRIRKRTPKLTSSGSMKKSVQEADGVGCIGAVAGVNSDKIVVVEYKSGYMSPEYAMEGLFSVKSDVFSFGVLLLEIISGKKNTGFYQTSSFNLLGYAWDTWTKRFLEWELIDSELDDISNKDLVPRYVNIGLLCVQQSPDDRPTMSDVVSMFGNDTASLPSPKPPAFQNVRGI*