Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044641.01.T01 | KEH26140.1 | 51.074 | 419 | 123 | 4 | 1 | 337 | 272 | 690 | 4.93E-136 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044641.01.T01 | A0A072UJW9 | 51.074 | 419 | 123 | 4 | 1 | 337 | 272 | 690 | 2.36e-136 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380016274.01 | MsG0880044641.01 | 0.802846 | 4.621681e-49 | 2.287708e-46 |
| MsG0580026613.01 | MsG0880044641.01 | 0.817276 | 3.585896e-52 | 2.599756e-49 |
| MsG0280007331.01 | MsG0880044641.01 | 0.808856 | 2.521797e-50 | 1.457733e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880044641.01.T01 | MTR_6g045307 | 51.074 | 419 | 123 | 4 | 1 | 337 | 272 | 690 | 5.98e-140 | 422 |
| MsG0880044641.01.T01 | MTR_1g050845 | 55.357 | 392 | 91 | 7 | 1 | 338 | 434 | 795 | 1.11e-128 | 387 |
| MsG0880044641.01.T01 | MTR_1g053075 | 84.071 | 113 | 18 | 0 | 1 | 113 | 1 | 113 | 9.00e-63 | 203 |
| MsG0880044641.01.T01 | MTR_1g052140 | 84.821 | 112 | 17 | 0 | 2 | 113 | 247 | 358 | 1.72e-59 | 203 |
| MsG0880044641.01.T01 | MTR_0113s0060 | 85.106 | 94 | 14 | 0 | 233 | 326 | 269 | 362 | 1.12e-49 | 172 |
| MsG0880044641.01.T01 | MTR_0037s0030 | 68.571 | 105 | 33 | 0 | 233 | 337 | 42 | 146 | 8.32e-46 | 155 |
| MsG0880044641.01.T01 | MTR_5g049420 | 81.818 | 88 | 16 | 0 | 240 | 327 | 1 | 88 | 1.20e-44 | 151 |
| MsG0880044641.01.T01 | MTR_0011s0100 | 55.479 | 146 | 59 | 1 | 192 | 337 | 26 | 165 | 1.24e-44 | 153 |
| MsG0880044641.01.T01 | MTR_0068s0080 | 62.016 | 129 | 23 | 3 | 56 | 177 | 1656 | 1765 | 2.56e-44 | 163 |
| MsG0880044641.01.T01 | MTR_0358s0010 | 81.707 | 82 | 15 | 0 | 1 | 82 | 24 | 105 | 1.28e-39 | 140 |
| MsG0880044641.01.T01 | MTR_2g449730 | 45.098 | 153 | 51 | 1 | 186 | 338 | 11 | 130 | 4.66e-36 | 128 |
| MsG0880044641.01.T01 | MTR_4g051153 | 61.321 | 106 | 23 | 2 | 233 | 338 | 100 | 187 | 2.66e-34 | 124 |
| MsG0880044641.01.T01 | MTR_0058s0150 | 44.379 | 169 | 74 | 3 | 188 | 338 | 2 | 168 | 5.31e-33 | 123 |
| MsG0880044641.01.T01 | MTR_1068s0010 | 41.358 | 162 | 74 | 4 | 149 | 310 | 9 | 149 | 1.67e-28 | 108 |
| MsG0880044641.01.T01 | MTR_0205s0020 | 53.061 | 98 | 46 | 0 | 1 | 98 | 83 | 180 | 5.71e-28 | 107 |
| MsG0880044641.01.T01 | MTR_0089s0050 | 75.362 | 69 | 17 | 0 | 1 | 69 | 24 | 92 | 1.29e-27 | 113 |
| MsG0880044641.01.T01 | MTR_8g462070 | 82.759 | 58 | 10 | 0 | 281 | 338 | 103 | 160 | 6.07e-27 | 104 |
| MsG0880044641.01.T01 | MTR_4g094418 | 72.603 | 73 | 20 | 0 | 265 | 337 | 465 | 537 | 8.05e-27 | 111 |
| MsG0880044641.01.T01 | MTR_8g465110 | 62.821 | 78 | 29 | 0 | 233 | 310 | 64 | 141 | 7.51e-26 | 102 |
| MsG0880044641.01.T01 | MTR_5g049330 | 44.715 | 123 | 61 | 3 | 181 | 303 | 11 | 126 | 2.50e-24 | 100 |
| MsG0880044641.01.T01 | MTR_3g434740 | 86.047 | 43 | 6 | 0 | 270 | 312 | 36 | 78 | 4.90e-17 | 75.1 |
| MsG0880044641.01.T01 | MTR_0158s0020 | 83.784 | 37 | 6 | 0 | 272 | 308 | 20 | 56 | 1.05e-12 | 62.8 |
| MsG0880044641.01.T01 | MTR_1g048840 | 44.928 | 69 | 36 | 1 | 272 | 338 | 129 | 197 | 1.59e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 73 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGTCTGTTGAACAATTTC+TGG | 0.138841 | 8:-46185882 | None:intergenic |
| AACTGAGGATGGTGACTTTA+AGG | 0.233536 | 8:+46185069 | MsG0880044641.01.T01:CDS |
| CAGACAATGATGAGATAAAA+AGG | 0.293113 | 8:+46185137 | MsG0880044641.01.T01:CDS |
| ATGATTTAAAGAAGTTGTTT+TGG | 0.337891 | 8:+46185224 | MsG0880044641.01.T01:CDS |
| TATCTCTAGTAAGAGTTGTT+TGG | 0.365504 | 8:+46186313 | MsG0880044641.01.T01:CDS |
| TGACTTTAAGGTCGATGATC+AGG | 0.389201 | 8:+46185081 | MsG0880044641.01.T01:CDS |
| TGATTCTGGAAGAGAGTCAT+AGG | 0.391290 | 8:+46185161 | MsG0880044641.01.T01:CDS |
| ACAGCTATCATTCAAGTATT+GGG | 0.395812 | 8:+46185775 | MsG0880044641.01.T01:intron |
| TATTGGGATGGCACCTTTCG+AGG | 0.397597 | 8:+46185791 | MsG0880044641.01.T01:CDS |
| CGGTGGAGACTTTACCTTTG+AGG | 0.397784 | 8:+46186250 | MsG0880044641.01.T01:CDS |
| AACAGCTATCATTCAAGTAT+TGG | 0.402368 | 8:+46185774 | MsG0880044641.01.T01:intron |
| GCACCTTTCGAGGCTTTGTA+TGG | 0.418203 | 8:+46185801 | MsG0880044641.01.T01:CDS |
| TATCAGATATCTGAGAGAAT+TGG | 0.419193 | 8:+46186087 | MsG0880044641.01.T01:intron |
| ACAGGAAAACTAATATTAAT+CGG | 0.424188 | 8:-46185476 | None:intergenic |
| TGAATCACATGGGACGGGTC+TGG | 0.438837 | 8:-46186195 | None:intergenic |
| GGTCTTTCTTACGCTTATCA+TGG | 0.452374 | 8:-46185964 | None:intergenic |
| GAGTAGCTTGAGCATTCATC+CGG | 0.467122 | 8:+46185183 | MsG0880044641.01.T01:CDS |
| GGTGTAGGACTCCGTTGTGT+TGG | 0.478367 | 8:+46185829 | MsG0880044641.01.T01:CDS |
| GGCACGGTGGCTTATAGAGT+TGG | 0.479895 | 8:+46186108 | MsG0880044641.01.T01:CDS |
| TCCTAAAACCACACTTTCAC+CGG | 0.481733 | 8:-46185859 | None:intergenic |
| TTACCTCAAGCAAACAACTC+TGG | 0.483365 | 8:-46186396 | None:intergenic |
| CTTTGTATGGTCGGAGGTGT+AGG | 0.483535 | 8:+46185814 | MsG0880044641.01.T01:CDS |
| TCATCTCGGAGTGTTAAGTT+AGG | 0.495213 | 8:+46184953 | MsG0880044641.01.T01:CDS |
| CGCAAAATGAAGACGTTGAG+AGG | 0.497309 | 8:+46186282 | MsG0880044641.01.T01:CDS |
| TACCTCAAGCAAACAACTCT+GGG | 0.497895 | 8:-46186395 | None:intergenic |
| GTTGTTTGGAGCGGCACTAC+TGG | 0.500201 | 8:+46186327 | MsG0880044641.01.T01:CDS |
| CTTTCGAGGCTTTGTATGGT+CGG | 0.500591 | 8:+46185805 | MsG0880044641.01.T01:CDS |
| GGAGATGGAGAGTAAGATGA+TGG | 0.501851 | 8:+46186365 | MsG0880044641.01.T01:CDS |
| TGATACATCTTTGTAGCTCC+CGG | 0.502573 | 8:-46185202 | None:intergenic |
| CCGTTGTGTTGGTTTGAGAC+CGG | 0.517015 | 8:+46185840 | MsG0880044641.01.T01:CDS |
| TACCCAGAGTTGTTTGCTTG+AGG | 0.518122 | 8:+46186393 | MsG0880044641.01.T01:CDS |
| ATATCTGCCAACTGAGCCAC+AGG | 0.520221 | 8:-46185494 | None:intergenic |
| GTGTGTTGAGGTTCCGAGGT+AGG | 0.533381 | 8:+46185104 | MsG0880044641.01.T01:CDS |
| CACTCTGAATCACATGGGAC+GGG | 0.533531 | 8:-46186200 | None:intergenic |
| GTAGAGCATCAGAAACCTGC+TGG | 0.542442 | 8:+46185313 | MsG0880044641.01.T01:CDS |
| TGAAAGCTTGACGTGGGAGA+TGG | 0.556228 | 8:+46186350 | MsG0880044641.01.T01:CDS |
| TGTTCAACAGACTACTAAGA+AGG | 0.558181 | 8:+46185890 | MsG0880044641.01.T01:CDS |
| CGTCATCACTCTGAATCACA+TGG | 0.560844 | 8:-46186206 | None:intergenic |
| GACTTTAAGGTCGATGATCA+GGG | 0.569595 | 8:+46185082 | MsG0880044641.01.T01:CDS |
| AAGGTAAAGTCTCCACCGTA+AGG | 0.572739 | 8:-46186245 | None:intergenic |
| GCTAGTAATCAAACTGAGGA+TGG | 0.578378 | 8:+46185058 | MsG0880044641.01.T01:CDS |
| GAAAACTAATATTAATCGGA+AGG | 0.580032 | 8:-46185472 | None:intergenic |
| TCACTCTGAATCACATGGGA+CGG | 0.583367 | 8:-46186201 | None:intergenic |
| AAACGTGTCATCAACCCAGC+AGG | 0.586384 | 8:-46185328 | None:intergenic |
| TTGCGATCATCAATCCTCAA+AGG | 0.588493 | 8:-46186264 | None:intergenic |
| TCGAGGCTTTGTATGGTCGG+AGG | 0.591795 | 8:+46185808 | MsG0880044641.01.T01:CDS |
| CAGGGTGTGTTGAGGTTCCG+AGG | 0.593208 | 8:+46185100 | MsG0880044641.01.T01:CDS |
| TTTGATTTGTCAGAAGTCGA+AGG | 0.598436 | 8:+46185291 | MsG0880044641.01.T01:CDS |
| CGACCATACAAAGCCTCGAA+AGG | 0.599019 | 8:-46185804 | None:intergenic |
| TAGTTTGTAAAATGTCATCT+CGG | 0.604210 | 8:+46184939 | None:intergenic |
| TGTTGACAGATTGACGAAGT+CGG | 0.615403 | 8:+46185442 | MsG0880044641.01.T01:intron |
| CTGGAATACAAATCCTACCT+CGG | 0.619561 | 8:-46185117 | None:intergenic |
| CTATCTGACACAATGCTCGA+AGG | 0.621084 | 8:-46185551 | None:intergenic |
| GTTTGAGACCGGTGAAAGTG+TGG | 0.621085 | 8:+46185851 | MsG0880044641.01.T01:CDS |
| TGTTTCATGTGTCGCAGCTG+AGG | 0.622020 | 8:+46186163 | MsG0880044641.01.T01:CDS |
| TGCAAATTCGATAAATGCGG+TGG | 0.622161 | 8:-46186135 | None:intergenic |
| AGTAGCTTGAGCATTCATCC+GGG | 0.622199 | 8:+46185184 | MsG0880044641.01.T01:CDS |
| CTAGTAAGAGTTGTTTGGAG+CGG | 0.623728 | 8:+46186318 | MsG0880044641.01.T01:CDS |
| TACTGGTGAAAGCTTGACGT+GGG | 0.633242 | 8:+46186344 | MsG0880044641.01.T01:CDS |
| CTATCATTCAAGTATTGGGA+TGG | 0.638563 | 8:+46185779 | MsG0880044641.01.T01:CDS |
| CGAGACATTGTGAAGCTGCA+TGG | 0.639300 | 8:+46185524 | MsG0880044641.01.T01:CDS |
| GCAAGTTAGAGACAACCTTA+CGG | 0.640650 | 8:+46186230 | MsG0880044641.01.T01:CDS |
| TAGAGCATCAGAAACCTGCT+GGG | 0.644610 | 8:+46185314 | MsG0880044641.01.T01:CDS |
| TCGATGATCAGGGTGTGTTG+AGG | 0.650539 | 8:+46185092 | MsG0880044641.01.T01:CDS |
| CTACTGGTGAAAGCTTGACG+TGG | 0.659176 | 8:+46186343 | MsG0880044641.01.T01:CDS |
| GATATCTGAGAGAATTGGCA+CGG | 0.668678 | 8:+46186092 | MsG0880044641.01.T01:intron |
| GTCATCACTCTGAATCACAT+GGG | 0.687308 | 8:-46186205 | None:intergenic |
| TCGTGCAAATTCGATAAATG+CGG | 0.696209 | 8:-46186138 | None:intergenic |
| GGTTGCTAGTAATCAAACTG+AGG | 0.702572 | 8:+46185054 | MsG0880044641.01.T01:CDS |
| ATCTGAGAGAATTGGCACGG+TGG | 0.709130 | 8:+46186095 | MsG0880044641.01.T01:CDS |
| GTCAGGATTGAAACGTGATG+TGG | 0.718934 | 8:+46185249 | MsG0880044641.01.T01:CDS |
| AGTTAGAGACAACCTTACGG+TGG | 0.726011 | 8:+46186233 | MsG0880044641.01.T01:CDS |
| CCGGTCTCAAACCAACACAA+CGG | 0.737423 | 8:-46185840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAGGAAAACTAATATTAAT+CGG | - | Chr8:46185479-46185498 | None:intergenic | 20.0% |
| !!! | ATGATTTAAAGAAGTTGTTT+TGG | + | Chr8:46185224-46185243 | MsG0880044641.01.T01:CDS | 20.0% |
| ! | GAAAACTAATATTAATCGGA+AGG | - | Chr8:46185475-46185494 | None:intergenic | 25.0% |
| !!! | ATTTAAAGAAGTTGTTTTGG+TGG | + | Chr8:46185227-46185246 | MsG0880044641.01.T01:CDS | 25.0% |
| !!! | GATTAATATTAGTTTTCCTG+TGG | + | Chr8:46185478-46185497 | MsG0880044641.01.T01:CDS | 25.0% |
| !!! | TGTTAAGTTTTTGGACTTAT+TGG | + | Chr8:46185033-46185052 | MsG0880044641.01.T01:CDS | 25.0% |
| AACAGCTATCATTCAAGTAT+TGG | + | Chr8:46185774-46185793 | MsG0880044641.01.T01:intron | 30.0% | |
| ACAGCTATCATTCAAGTATT+GGG | + | Chr8:46185775-46185794 | MsG0880044641.01.T01:intron | 30.0% | |
| AGAAGTTGAATCCAAGTTTA+TGG | + | Chr8:46186060-46186079 | MsG0880044641.01.T01:intron | 30.0% | |
| ATTCTCTCAGATATCTGATA+AGG | - | Chr8:46186087-46186106 | None:intergenic | 30.0% | |
| CAGACAATGATGAGATAAAA+AGG | + | Chr8:46185137-46185156 | MsG0880044641.01.T01:CDS | 30.0% | |
| TATCAGATATCTGAGAGAAT+TGG | + | Chr8:46186087-46186106 | MsG0880044641.01.T01:intron | 30.0% | |
| TATCTCTAGTAAGAGTTGTT+TGG | + | Chr8:46186313-46186332 | MsG0880044641.01.T01:CDS | 30.0% | |
| TGAGATAAAAAGGATGATTC+TGG | + | Chr8:46185147-46185166 | MsG0880044641.01.T01:CDS | 30.0% | |
| ! | CTTTTTATCTCATCATTGTC+TGG | - | Chr8:46185139-46185158 | None:intergenic | 30.0% |
| ! | GAAAGCTGATGTTAAGTTTT+TGG | + | Chr8:46185024-46185043 | MsG0880044641.01.T01:CDS | 30.0% |
| AGTTTGCCAAATACTCCTAA+AGG | + | Chr8:46185398-46185417 | MsG0880044641.01.T01:intron | 35.0% | |
| ATACTATCCCATTTCCATTC+TGG | - | Chr8:46185360-46185379 | None:intergenic | 35.0% | |
| GAAATGGGATAGTATATCCA+TGG | + | Chr8:46185365-46185384 | MsG0880044641.01.T01:intron | 35.0% | |
| GTAGTCTGTTGAACAATTTC+TGG | - | Chr8:46185885-46185904 | None:intergenic | 35.0% | |
| GTTTGCCAAATACTCCTAAA+GGG | + | Chr8:46185399-46185418 | MsG0880044641.01.T01:intron | 35.0% | |
| TAAAGGGAATGACGCAATTT+GGG | + | Chr8:46185415-46185434 | MsG0880044641.01.T01:intron | 35.0% | |
| TCGTGCAAATTCGATAAATG+CGG | - | Chr8:46186141-46186160 | None:intergenic | 35.0% | |
| TCTGATAAGGACCATAAACT+TGG | - | Chr8:46186074-46186093 | None:intergenic | 35.0% | |
| TGATGTACCAGAATGGAAAT+GGG | + | Chr8:46185350-46185369 | MsG0880044641.01.T01:intron | 35.0% | |
| TGTTCAACAGACTACTAAGA+AGG | + | Chr8:46185890-46185909 | MsG0880044641.01.T01:CDS | 35.0% | |
| TTGATGTACCAGAATGGAAA+TGG | + | Chr8:46185349-46185368 | MsG0880044641.01.T01:intron | 35.0% | |
| ! | CCAAATCTAGAGTAAATCGT+GGG | - | Chr8:46185580-46185599 | None:intergenic | 35.0% |
| ! | TCCAAATCTAGAGTAAATCG+TGG | - | Chr8:46185581-46185600 | None:intergenic | 35.0% |
| !! | CTATCATTCAAGTATTGGGA+TGG | + | Chr8:46185779-46185798 | MsG0880044641.01.T01:CDS | 35.0% |
| !! | TCATTCCCTTTAGGAGTATT+TGG | - | Chr8:46185407-46185426 | None:intergenic | 35.0% |
| !! | TTTGATTTGTCAGAAGTCGA+AGG | + | Chr8:46185291-46185310 | MsG0880044641.01.T01:CDS | 35.0% |
| AACTGAGGATGGTGACTTTA+AGG | + | Chr8:46185069-46185088 | MsG0880044641.01.T01:CDS | 40.0% | |
| AAGAGTTTGCAAGAGGCTTT+AGG | + | Chr8:46185600-46185619 | MsG0880044641.01.T01:intron | 40.0% | |
| ACACGTTTGATGTACCAGAA+TGG | + | Chr8:46185343-46185362 | MsG0880044641.01.T01:intron | 40.0% | |
| AGAAAGACCTGAGTTTCAAG+AGG | + | Chr8:46185978-46185997 | MsG0880044641.01.T01:intron | 40.0% | |
| AGAGTTTGTGTACTTGAGCA+AGG | + | Chr8:46185706-46185725 | MsG0880044641.01.T01:intron | 40.0% | |
| ATCCTCAAACAGATGTCAGT+CGG | + | Chr8:46185650-46185669 | MsG0880044641.01.T01:intron | 40.0% | |
| CAAATTGCGTCATTCCCTTT+AGG | - | Chr8:46185416-46185435 | None:intergenic | 40.0% | |
| CCCACGATTTACTCTAGATT+TGG | + | Chr8:46185577-46185596 | MsG0880044641.01.T01:intron | 40.0% | |
| CTAAAGGGAATGACGCAATT+TGG | + | Chr8:46185414-46185433 | MsG0880044641.01.T01:intron | 40.0% | |
| CTAGTAAGAGTTGTTTGGAG+CGG | + | Chr8:46186318-46186337 | MsG0880044641.01.T01:CDS | 40.0% | |
| CTGGAATACAAATCCTACCT+CGG | - | Chr8:46185120-46185139 | None:intergenic | 40.0% | |
| GAAAGACCTGAGTTTCAAGA+GGG | + | Chr8:46185979-46185998 | MsG0880044641.01.T01:intron | 40.0% | |
| GATATCTGAGAGAATTGGCA+CGG | + | Chr8:46186092-46186111 | MsG0880044641.01.T01:intron | 40.0% | |
| GATTTGGAAGAGTTTGCAAG+AGG | + | Chr8:46185593-46185612 | MsG0880044641.01.T01:intron | 40.0% | |
| GCAAGTTAGAGACAACCTTA+CGG | + | Chr8:46186230-46186249 | MsG0880044641.01.T01:CDS | 40.0% | |
| GCTAGTAATCAAACTGAGGA+TGG | + | Chr8:46185058-46185077 | MsG0880044641.01.T01:CDS | 40.0% | |
| GGTCTTTCTTACGCTTATCA+TGG | - | Chr8:46185967-46185986 | None:intergenic | 40.0% | |
| GGTTGCTAGTAATCAAACTG+AGG | + | Chr8:46185054-46185073 | MsG0880044641.01.T01:CDS | 40.0% | |
| GTCATCACTCTGAATCACAT+GGG | - | Chr8:46186208-46186227 | None:intergenic | 40.0% | |
| TCCTAAAACCACACTTTCAC+CGG | - | Chr8:46185862-46185881 | None:intergenic | 40.0% | |
| TGATACATCTTTGTAGCTCC+CGG | - | Chr8:46185205-46185224 | None:intergenic | 40.0% | |
| TGCAAATTCGATAAATGCGG+TGG | - | Chr8:46186138-46186157 | None:intergenic | 40.0% | |
| TGTTGACAGATTGACGAAGT+CGG | + | Chr8:46185442-46185461 | MsG0880044641.01.T01:intron | 40.0% | |
| TTGCGATCATCAATCCTCAA+AGG | - | Chr8:46186267-46186286 | None:intergenic | 40.0% | |
| ! | GCTCTAAGTTGAGATGAGTT+CGG | + | Chr8:46185622-46185641 | MsG0880044641.01.T01:intron | 40.0% |
| ! | TCATCTCGGAGTGTTAAGTT+AGG | + | Chr8:46184953-46184972 | MsG0880044641.01.T01:CDS | 40.0% |
| ! | TGATTCTGGAAGAGAGTCAT+AGG | + | Chr8:46185161-46185180 | MsG0880044641.01.T01:CDS | 40.0% |
| !! | GACTTTAAGGTCGATGATCA+GGG | + | Chr8:46185082-46185101 | MsG0880044641.01.T01:CDS | 40.0% |
| !! | TGACTTTAAGGTCGATGATC+AGG | + | Chr8:46185081-46185100 | MsG0880044641.01.T01:CDS | 40.0% |
| !!! | AAGAAGTTGTTTTGGTGGTC+AGG | + | Chr8:46185232-46185251 | MsG0880044641.01.T01:CDS | 40.0% |
| AAGGTAAAGTCTCCACCGTA+AGG | - | Chr8:46186248-46186267 | None:intergenic | 45.0% | |
| ACTTCAATGCACGACCAACA+CGG | - | Chr8:46186037-46186056 | None:intergenic | 45.0% | |
| ACTTGAGCAAGGTGGAACTT+GGG | + | Chr8:46185717-46185736 | MsG0880044641.01.T01:intron | 45.0% | |
| AGTAGCTTGAGCATTCATCC+GGG | + | Chr8:46185184-46185203 | MsG0880044641.01.T01:CDS | 45.0% | |
| AGTTAGAGACAACCTTACGG+TGG | + | Chr8:46186233-46186252 | MsG0880044641.01.T01:CDS | 45.0% | |
| CAAGTCTTCGAGTGACTGAA+TGG | - | Chr8:46185683-46185702 | None:intergenic | 45.0% | |
| CGCAAAATGAAGACGTTGAG+AGG | + | Chr8:46186282-46186301 | MsG0880044641.01.T01:CDS | 45.0% | |
| CGTCATCACTCTGAATCACA+TGG | - | Chr8:46186209-46186228 | None:intergenic | 45.0% | |
| CTATCTGACACAATGCTCGA+AGG | - | Chr8:46185554-46185573 | None:intergenic | 45.0% | |
| GAGTAGCTTGAGCATTCATC+CGG | + | Chr8:46185183-46185202 | MsG0880044641.01.T01:CDS | 45.0% | |
| GCAAACTCGTCACAAATCCA+TGG | - | Chr8:46185385-46185404 | None:intergenic | 45.0% | |
| GGAGATGGAGAGTAAGATGA+TGG | + | Chr8:46186365-46186384 | MsG0880044641.01.T01:CDS | 45.0% | |
| GGGTAACTCTCAAGAACACA+TGG | - | Chr8:46186008-46186027 | None:intergenic | 45.0% | |
| GTCAGGATTGAAACGTGATG+TGG | + | Chr8:46185249-46185268 | MsG0880044641.01.T01:CDS | 45.0% | |
| GTTTGTGTACTTGAGCAAGG+TGG | + | Chr8:46185709-46185728 | MsG0880044641.01.T01:intron | 45.0% | |
| TACTGGTGAAAGCTTGACGT+GGG | + | Chr8:46186344-46186363 | MsG0880044641.01.T01:CDS | 45.0% | |
| TACTTGAGCAAGGTGGAACT+TGG | + | Chr8:46185716-46185735 | MsG0880044641.01.T01:intron | 45.0% | |
| TCACTCTGAATCACATGGGA+CGG | - | Chr8:46186204-46186223 | None:intergenic | 45.0% | |
| TTCCGACTGACATCTGTTTG+AGG | - | Chr8:46185655-46185674 | None:intergenic | 45.0% | |
| ! | CTTTCGAGGCTTTGTATGGT+CGG | + | Chr8:46185805-46185824 | MsG0880044641.01.T01:CDS | 45.0% |
| ! | TAGAGCATCAGAAACCTGCT+GGG | + | Chr8:46185314-46185333 | MsG0880044641.01.T01:CDS | 45.0% |
| ! | TAGTTTTCCTGTGGCTCAGT+TGG | + | Chr8:46185487-46185506 | MsG0880044641.01.T01:CDS | 45.0% |
| !! | ACCGGTGAAAGTGTGGTTTT+AGG | + | Chr8:46185858-46185877 | MsG0880044641.01.T01:CDS | 45.0% |
| AAACGTGTCATCAACCCAGC+AGG | - | Chr8:46185331-46185350 | None:intergenic | 50.0% | |
| ATATCTGCCAACTGAGCCAC+AGG | - | Chr8:46185497-46185516 | None:intergenic | 50.0% | |
| ATCTGAGAGAATTGGCACGG+TGG | + | Chr8:46186095-46186114 | MsG0880044641.01.T01:CDS | 50.0% | |
| CACTCTGAATCACATGGGAC+GGG | - | Chr8:46186203-46186222 | None:intergenic | 50.0% | |
| CCGGTCTCAAACCAACACAA+CGG | - | Chr8:46185843-46185862 | None:intergenic | 50.0% | |
| CGACCATACAAAGCCTCGAA+AGG | - | Chr8:46185807-46185826 | None:intergenic | 50.0% | |
| CGAGACATTGTGAAGCTGCA+TGG | + | Chr8:46185524-46185543 | MsG0880044641.01.T01:CDS | 50.0% | |
| CGGTGGAGACTTTACCTTTG+AGG | + | Chr8:46186250-46186269 | MsG0880044641.01.T01:CDS | 50.0% | |
| CTACTGGTGAAAGCTTGACG+TGG | + | Chr8:46186343-46186362 | MsG0880044641.01.T01:CDS | 50.0% | |
| TATTGGGATGGCACCTTTCG+AGG | + | Chr8:46185791-46185810 | MsG0880044641.01.T01:CDS | 50.0% | |
| TCGATGATCAGGGTGTGTTG+AGG | + | Chr8:46185092-46185111 | MsG0880044641.01.T01:CDS | 50.0% | |
| TGAAAGCTTGACGTGGGAGA+TGG | + | Chr8:46186350-46186369 | MsG0880044641.01.T01:CDS | 50.0% | |
| TGGTCTCCCTCTTGAAACTC+AGG | - | Chr8:46185988-46186007 | None:intergenic | 50.0% | |
| TGTTTCATGTGTCGCAGCTG+AGG | + | Chr8:46186163-46186182 | MsG0880044641.01.T01:CDS | 50.0% | |
| ! | CTTTGTATGGTCGGAGGTGT+AGG | + | Chr8:46185814-46185833 | MsG0880044641.01.T01:CDS | 50.0% |
| ! | GCACCTTTCGAGGCTTTGTA+TGG | + | Chr8:46185801-46185820 | MsG0880044641.01.T01:CDS | 50.0% |
| ! | GTAGAGCATCAGAAACCTGC+TGG | + | Chr8:46185313-46185332 | MsG0880044641.01.T01:CDS | 50.0% |
| ! | GTTTGAGACCGGTGAAAGTG+TGG | + | Chr8:46185851-46185870 | MsG0880044641.01.T01:CDS | 50.0% |
| !! | CCGTTGTGTTGGTTTGAGAC+CGG | + | Chr8:46185840-46185859 | MsG0880044641.01.T01:CDS | 50.0% |
| AGTTACCCCAACGACCGTGT+TGG | + | Chr8:46186020-46186039 | MsG0880044641.01.T01:intron | 55.0% | |
| GGCACGGTGGCTTATAGAGT+TGG | + | Chr8:46186108-46186127 | MsG0880044641.01.T01:CDS | 55.0% | |
| GGTGTAGGACTCCGTTGTGT+TGG | + | Chr8:46185829-46185848 | MsG0880044641.01.T01:CDS | 55.0% | |
| GTGTGTTGAGGTTCCGAGGT+AGG | + | Chr8:46185104-46185123 | MsG0880044641.01.T01:CDS | 55.0% | |
| TGAATCACATGGGACGGGTC+TGG | - | Chr8:46186198-46186217 | None:intergenic | 55.0% | |
| ! | GTTGTTTGGAGCGGCACTAC+TGG | + | Chr8:46186327-46186346 | MsG0880044641.01.T01:CDS | 55.0% |
| ! | TCGAGGCTTTGTATGGTCGG+AGG | + | Chr8:46185808-46185827 | MsG0880044641.01.T01:CDS | 55.0% |
| CACGACCAACACGGTCGTTG+GGG | - | Chr8:46186028-46186047 | None:intergenic | 60.0% | |
| CAGGGTGTGTTGAGGTTCCG+AGG | + | Chr8:46185100-46185119 | MsG0880044641.01.T01:CDS | 60.0% | |
| GCACGACCAACACGGTCGTT+GGG | - | Chr8:46186029-46186048 | None:intergenic | 60.0% | |
| TGCACGACCAACACGGTCGT+TGG | - | Chr8:46186030-46186049 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 46184950 | 46186413 | 46184950 | ID=MsG0880044641.01;Name=MsG0880044641.01 |
| Chr8 | mRNA | 46184950 | 46186413 | 46184950 | ID=MsG0880044641.01.T01;Parent=MsG0880044641.01;Name=MsG0880044641.01.T01;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|0.75|4|0|338 |
| Chr8 | exon | 46184950 | 46185335 | 46184950 | ID=MsG0880044641.01.T01:exon:18717;Parent=MsG0880044641.01.T01 |
| Chr8 | exon | 46185451 | 46185564 | 46185451 | ID=MsG0880044641.01.T01:exon:18718;Parent=MsG0880044641.01.T01 |
| Chr8 | exon | 46185779 | 46185974 | 46185779 | ID=MsG0880044641.01.T01:exon:18719;Parent=MsG0880044641.01.T01 |
| Chr8 | exon | 46186093 | 46186413 | 46186093 | ID=MsG0880044641.01.T01:exon:18720;Parent=MsG0880044641.01.T01 |
| Chr8 | CDS | 46184950 | 46185335 | 46184950 | ID=MsG0880044641.01.T01:cds;Parent=MsG0880044641.01.T01 |
| Chr8 | CDS | 46185451 | 46185564 | 46185451 | ID=MsG0880044641.01.T01:cds;Parent=MsG0880044641.01.T01 |
| Chr8 | CDS | 46185779 | 46185974 | 46185779 | ID=MsG0880044641.01.T01:cds;Parent=MsG0880044641.01.T01 |
| Chr8 | CDS | 46186093 | 46186413 | 46186093 | ID=MsG0880044641.01.T01:cds;Parent=MsG0880044641.01.T01 |
| Gene Sequence |
| Protein sequence |
