AlfalfaGEDB | MsG0880045286.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045286.01

KEGG: K02900
GO: GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00828

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045286.01.T01	AET03424.1	99.099	111	1	0	1	111	38	148	2.96E-73	224

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045286.01.T01	Q9LR33	79.279	111	21	1	1	111	38	146	1.73E-58	179

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045286.01.T01	G7LJC8	99.099	111	1	0	1	111	38	148	1.42e-73	224

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006760.01	MsG0880045286.01	0.804032	2.623952e-49	1.338918e-46
MsG0480021293.01	MsG0880045286.01	0.819806	9.572871e-53	7.442943e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045286.01.T01	MTR_8g069460	99.099	111	1	0	1	111	38	148	3.59e-77	224
MsG0880045286.01.T01	MTR_5g033090	81.081	111	20	1	1	111	38	147	1.10e-60	182
MsG0880045286.01.T01	MTR_3g077050	80.180	111	21	1	1	111	38	147	2.89e-60	181
MsG0880045286.01.T01	MTR_4g119380	43.243	111	23	3	1	111	122	192	4.24e-16	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045286.01.T01	AT1G23290	79.279	111	21	1	1	111	38	146	1.77e-59	179
MsG0880045286.01.T01	AT1G70600	78.378	111	22	1	1	111	38	146	4.85e-59	178
MsG0880045286.01.T01	AT1G12960	52.000	100	18	2	13	110	29	100	1.11e-23	87.8

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Find 32 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTGCGTAACATCAATCAC+AGG	0.626930	8:-56919471	None:intergenic
AAGAAGATTAAGGAAGCTGG+TGG	0.688253	8:+56919582	MsG0880045286.01.T01:CDS
AAGTATCACCCTGGTTACTT+CGG	0.566184	8:+56919318	MsG0880045286.01.T01:CDS
ACAACAACACTCTGATTCTT+CGG	0.371380	8:-56919528	None:intergenic
ACCTCAAGAAGTGAAGGACA+AGG	0.699258	8:+56919425	MsG0880045286.01.T01:CDS
ACTTGTCGAAGAGGATGCGG+TGG	0.693301	8:-56919299	None:intergenic
AGAGTATCGATGTTCACGGT+GGG	0.631980	8:-56919390	None:intergenic
CAGGGTGATACTTGTCGAAG+AGG	0.610306	8:-56919308	None:intergenic
CCACTTTGCCGAAGTAACCA+GGG	0.680564	8:-56919326	None:intergenic
CCAGAGAGTATCGATGTTCA+CGG	0.544302	8:-56919394	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAACAACACTCTGATTCTT+CGG	-	Chr8:56919531-56919550	None:intergenic	35.0%
GATTGCTGAGAAGAAGATTA+AGG	+	Chr8:56919572-56919591	MsG0880045286.01.T01:CDS	35.0%
TGATTGATGTTACGCAGTTT+GGG	+	Chr8:56919475-56919494	MsG0880045286.01.T01:CDS	35.0%
AACTGCGTAACATCAATCAC+AGG	-	Chr8:56919474-56919493	None:intergenic	40.0%
AAGAAGATTAAGGAAGCTGG+TGG	+	Chr8:56919582-56919601	MsG0880045286.01.T01:CDS	40.0%
AAGTATCACCCTGGTTACTT+CGG	+	Chr8:56919318-56919337	MsG0880045286.01.T01:CDS	40.0%
GAGAAGAAGATTAAGGAAGC+TGG	+	Chr8:56919579-56919598	MsG0880045286.01.T01:CDS	40.0%
GTGATTGATGTTACGCAGTT+TGG	+	Chr8:56919474-56919493	MsG0880045286.01.T01:CDS	40.0%
TCTTCTACCTCAAGAAGTGA+AGG	+	Chr8:56919419-56919438	MsG0880045286.01.T01:CDS	40.0%
ACCTCAAGAAGTGAAGGACA+AGG	+	Chr8:56919425-56919444	MsG0880045286.01.T01:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	56919291	56919626	56919291	ID=MsG0880045286.01;Name=MsG0880045286.01
Chr8	mRNA	56919291	56919626	56919291	ID=MsG0880045286.01.T01;Parent=MsG0880045286.01;Name=MsG0880045286.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|111
Chr8	exon	56919291	56919626	56919291	ID=MsG0880045286.01.T01:exon:1204;Parent=MsG0880045286.01.T01
Chr8	CDS	56919291	56919626	56919291	ID=MsG0880045286.01.T01:cds;Parent=MsG0880045286.01.T01

Gene Sequence	>MsG0880045286.01.T01 ATGCACCACCACCGCATCCTCTTCGACAAGTATCACCCTGGTTACTTCGGCAAAGTGGGTATGCGTTACTTTCACAAACTCCGCAACAAATTCCACTGTCCCACCGTGAACATCGATACTCTCTGGTCTCTTCTACCTCAAGAAGTGAAGGACAAGGCATCAAAGTCGAAGGATGTTGCTCCTGTGATTGATGTTACGCAGTTTGGGTTCTTTAAGGTTCTTGGGAAAGGTGTGTTGCCGAAGAATCAGAGTGTTGTTGTTAAAGCGAAGCTGGTTTCGAAGATTGCTGAGAAGAAGATTAAGGAAGCTGGTGGTGCTGTTCTTCTTACTGCTTAA
Protein sequence	>MsG0880045286.01.T01 MHHHRILFDKYHPGYFGKVGMRYFHKLRNKFHCPTVNIDTLWSLLPQEVKDKASKSKDVAPVIDVTQFGFFKVLGKGVLPKNQSVVVKAKLVSKIAEKKIKEAGGAVLLTA*