AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006760.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006760.01.T01 MTR_2g014370 96.053 76 3 0 1 76 2 77 8.11e-46 143
MsG0280006760.01.T01 MTR_2g014370 94.805 77 4 0 1 77 2 78 8.30e-46 142
MsG0280006760.01.T01 MTR_2g014370 94.805 77 4 0 1 77 2 78 1.28e-45 142
MsG0280006760.01.T01 MTR_2g014370 94.805 77 4 0 1 77 2 78 2.78e-45 142
MsG0280006760.01.T01 MTR_4g078770 49.367 79 37 2 2 77 4 82 3.41e-12 57.8
MsG0280006760.01.T01 MTR_4g078770 49.367 79 37 2 2 77 4 82 3.59e-12 57.8
MsG0280006760.01.T01 MTR_4g078770 49.367 79 37 2 2 77 4 82 4.18e-12 57.8
MsG0280006760.01.T01 MTR_4g078770 49.367 79 37 2 2 77 4 82 4.34e-12 57.8
MsG0280006760.01.T01 MTR_4g078770 49.367 79 37 2 2 77 4 82 4.68e-12 57.4
MsG0280006760.01.T01 MTR_4g078770 49.367 79 37 2 2 77 4 82 5.74e-12 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006760.01.T01 AT2G33847 59.740 77 27 2 1 73 1 77 1.93e-19 76.6
MsG0280006760.01.T01 AT2G33847 59.740 77 27 2 1 73 1 77 1.95e-19 76.3
MsG0280006760.01.T01 AT1G28395 55.263 76 26 2 17 90 22 91 4.21e-19 75.9
MsG0280006760.01.T01 AT1G28395 55.263 76 26 2 17 90 22 91 4.21e-19 75.9
MsG0280006760.01.T01 AT1G28395 58.108 74 23 2 17 82 22 95 8.36e-19 75.1
MsG0280006760.01.T01 AT1G28395 58.108 74 23 2 17 82 22 95 8.36e-19 75.1
MsG0280006760.01.T01 AT1G28395 58.108 74 23 2 17 82 22 95 8.36e-19 75.1
MsG0280006760.01.T01 AT1G28395 61.905 63 22 1 17 77 22 84 4.35e-18 73.2

Find 35 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAATTGAGGTTTGTTT+TGG 0.242742 2:+5932472 None:intergenic
CGCCGCTTCTCGCGCCAACC+TGG 0.287298 2:-5932539 MsG0280006760.01.T01:CDS
TGGATTTCAGTTTACTTGTT+AGG 0.320683 2:-5929668 None:intergenic
GACCTGCATGCTCAATGTTT+CGG 0.399809 2:-5932498 MsG0280006760.01.T01:CDS
TCTCGCGCCAACCTGGCTGC+CGG 0.401245 2:-5932532 MsG0280006760.01.T01:CDS
ATCTGGCGGCTGACATCGTT+AGG 0.403500 2:+5932575 None:intergenic
GAAGCTGTTGCAGTGTGATA+TGG 0.410643 2:+5932318 None:intergenic
GGGACGAACACCGGAGGTTA+TGG 0.417357 2:+5932596 None:intergenic
GATGGATGATTGCTGTTATT+CGG 0.418330 2:-5929716 MsG0280006760.01.T01:CDS
CAATTTCCAATCGCATTTCA+AGG 0.423789 2:-5932459 MsG0280006760.01.T01:intron
TAGGTTTGGCTCCGGCAGCC+AGG 0.427645 2:+5932521 None:intergenic
TTTGGCTCCGGCAGCCAGGT+TGG 0.437067 2:+5932525 None:intergenic
TTGCCAGTGGAGATGAGTTC+CGG 0.437830 2:-5932357 MsG0280006760.01.T01:CDS
TTCATTGCGCGTACTTTCTG+TGG 0.450649 2:-5929688 MsG0280006760.01.T01:CDS
TGAGCATGCAGGTCTAGGTT+TGG 0.456182 2:+5932507 None:intergenic
AGCCAGGTTGGCGCGAGAAG+CGG 0.458390 2:+5932537 None:intergenic
AACATTGAGCATGCAGGTCT+AGG 0.474408 2:+5932502 None:intergenic
GGCGGAGCGAAGGAAGCATC+TGG 0.487477 2:+5932558 None:intergenic
TGAAATGCGATTGGAAATTG+AGG 0.488069 2:+5932462 None:intergenic
CGCGAGAAGCGGCGGAGCGA+AGG 0.493060 2:+5932548 None:intergenic
TGCAGGTCTAGGTTTGGCTC+CGG 0.513928 2:+5932513 None:intergenic
TTGTTACCTTGAAATGCGAT+TGG 0.518636 2:+5932453 None:intergenic
CAGGTTGGCGCGAGAAGCGG+CGG 0.521433 2:+5932540 None:intergenic
ATCCGAAACATTGAGCATGC+AGG 0.553491 2:+5932496 None:intergenic
ACGCCGGAACTCATCTCCAC+TGG 0.567030 2:+5932354 None:intergenic
ACGAACACCGGAGGTTATGG+TGG 0.576192 2:+5932599 None:intergenic
TGAAGAGCGAGCATCAAAGA+TGG 0.593981 2:-5931077 MsG0280006760.01.T01:intron
CGAACACCGGAGGTTATGGT+GGG 0.604922 2:+5932600 None:intergenic
TCTGGCGGCTGACATCGTTA+GGG 0.611140 2:+5932576 None:intergenic
TTTGTTGTGTAGATTGCCAG+TGG 0.631697 2:-5932370 MsG0280006760.01.T01:intron
GGAGCGAAGGAAGCATCTGG+CGG 0.642459 2:+5932561 None:intergenic
TCGTTAGGGACGAACACCGG+AGG 0.667385 2:+5932590 None:intergenic
ACATCGTTAGGGACGAACAC+CGG 0.677471 2:+5932587 None:intergenic
ATGATTGCTGTTATTCGGTG+CGG 0.694522 2:-5929711 MsG0280006760.01.T01:CDS
TGGAAGCAAAGATTCGACGC+CGG 0.708954 2:+5932338 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAGTCAAATTGTTT+CGG + Chr2:5930598-5930617 None:intergenic 15.0%
!! AATTTGAAAAGTTCAAAATA+AGG + Chr2:5932175-5932194 None:intergenic 15.0%
!! ATTTATATCAATACGAAAAA+AGG + Chr2:5930938-5930957 None:intergenic 15.0%
!! TTCATTATTAAGTAATAAAG+AGG + Chr2:5930782-5930801 None:intergenic 15.0%
!!! ATGGATTTATTTCAAATTTT+AGG - Chr2:5931218-5931237 MsG0280006760.01.T01:intron 15.0%
!!! TGTATCAAAATTCATTTTTA+CGG + Chr2:5930828-5930847 None:intergenic 15.0%
!!! TTCAGATATTTTTTTCTTTT+GGG - Chr2:5931693-5931712 MsG0280006760.01.T01:intron 15.0%
!! AAAAGTAAAACAAACAAAGA+TGG + Chr2:5930977-5930996 None:intergenic 20.0%
!! AAATAAGTTGTTTATCCAAA+CGG - Chr2:5930670-5930689 MsG0280006760.01.T01:intron 20.0%
!! AATTCGAGTAAACTATTATT+AGG + Chr2:5929860-5929879 None:intergenic 20.0%
!! AATTTATCAAATGCTGAAAT+TGG - Chr2:5930155-5930174 MsG0280006760.01.T01:intron 20.0%
!! AGCAAATATATAAAATGCTT+TGG + Chr2:5932257-5932276 None:intergenic 20.0%
!! CAAATATATAAAATGCTTTG+GGG + Chr2:5932255-5932274 None:intergenic 20.0%
!! GAATGTTCATTTATATAAAG+AGG + Chr2:5931548-5931567 None:intergenic 20.0%
!! GATATAAATATTAACCTTGT+TGG - Chr2:5930949-5930968 MsG0280006760.01.T01:intron 20.0%
!! GCAAATATATAAAATGCTTT+GGG + Chr2:5932256-5932275 None:intergenic 20.0%
!! TATTATTCATAATCTTGTCA+AGG + Chr2:5930420-5930439 None:intergenic 20.0%
!! TGATAGTTAAACAATAATTG+AGG + Chr2:5930049-5930068 None:intergenic 20.0%
!! TGTTTGAACAATAAAATAGT+TGG + Chr2:5931073-5931092 None:intergenic 20.0%
!! TTCCAAATTGAATGTAAAAT+TGG - Chr2:5931291-5931310 MsG0280006760.01.T01:intron 20.0%
!!! AACTTTTTTTCCTTTGAATT+AGG - Chr2:5931098-5931117 MsG0280006760.01.T01:intron 20.0%
!!! ACTTTTTTTCCTTTGAATTA+GGG - Chr2:5931099-5931118 MsG0280006760.01.T01:intron 20.0%
!!! ATCAAATAAAATTTTTCGGA+AGG + Chr2:5932013-5932032 None:intergenic 20.0%
!!! ATCCAATTTTACATTCAATT+TGG + Chr2:5931296-5931315 None:intergenic 20.0%
!!! CTGCATCAAATAAAATTTTT+CGG + Chr2:5932017-5932036 None:intergenic 20.0%
!!! CTTTATTTTATCTTGTGTTA+TGG - Chr2:5930609-5930628 MsG0280006760.01.T01:intron 20.0%
!!! GTTCAGATATTTTTTTCTTT+TGG - Chr2:5931692-5931711 MsG0280006760.01.T01:intron 20.0%
!!! TATAATTGCTTTTTTCAAGT+GGG - Chr2:5930097-5930116 MsG0280006760.01.T01:intron 20.0%
!!! TTATAATTGCTTTTTTCAAG+TGG - Chr2:5930096-5930115 MsG0280006760.01.T01:intron 20.0%
!!! TTTTTCAATTGTACCTTTTT+TGG - Chr2:5930993-5931012 MsG0280006760.01.T01:intron 20.0%
! AAATGACAGAAACATTACAT+GGG + Chr2:5932360-5932379 None:intergenic 25.0%
! AACTCAGATGAATATTAAAC+AGG + Chr2:5932084-5932103 None:intergenic 25.0%
! AAGTTTGTATAGACTTTACA+TGG - Chr2:5930207-5930226 MsG0280006760.01.T01:intron 25.0%
! AATAAGTTGTTTATCCAAAC+GGG - Chr2:5930671-5930690 MsG0280006760.01.T01:intron 25.0%
! ACTGACAAATTATTGTGATT+GGG + Chr2:5931389-5931408 None:intergenic 25.0%
! CTAAATAACACAATCCATAA+TGG + Chr2:5931498-5931517 None:intergenic 25.0%
! CTATGATCTTGTAATTATGT+TGG - Chr2:5932457-5932476 MsG0280006760.01.T01:intron 25.0%
! CTTAACACACTTAATGTTAA+TGG - Chr2:5931942-5931961 MsG0280006760.01.T01:intron 25.0%
! GTTAATGAAAAAACAGCTTA+TGG + Chr2:5930395-5930414 None:intergenic 25.0%
! TAAATCTTCTACCAAATGAA+GGG + Chr2:5930722-5930741 None:intergenic 25.0%
! TACTGACAAATTATTGTGAT+TGG + Chr2:5931390-5931409 None:intergenic 25.0%
! TCATTTATATAAAGAGGTCT+AGG + Chr2:5931542-5931561 None:intergenic 25.0%
! TGTGTTAATTCATAAGTTCT+CGG - Chr2:5930352-5930371 MsG0280006760.01.T01:intron 25.0%
!! AAGATTTAGTGTCTAGAATA+TGG - Chr2:5930734-5930753 MsG0280006760.01.T01:intron 25.0%
!! AGATTTAGTGTCTAGAATAT+GGG - Chr2:5930735-5930754 MsG0280006760.01.T01:intron 25.0%
!!! AATCCATAATGGATCTTATA+AGG + Chr2:5931487-5931506 None:intergenic 25.0%
!!! ATCCATAATGGATCTTATAA+GGG + Chr2:5931486-5931505 None:intergenic 25.0%
!!! TACGTTTTTTATCCTCTTAT+TGG - Chr2:5930906-5930925 MsG0280006760.01.T01:intron 25.0%
AAAACAGCCATGTCAAAATA+GGG + Chr2:5932296-5932315 None:intergenic 30.0%
AAACATAAGCCAATTCAAAC+GGG - Chr2:5930469-5930488 MsG0280006760.01.T01:intron 30.0%
AAATCTTCTACCAAATGAAG+GGG + Chr2:5930721-5930740 None:intergenic 30.0%
ACTTATTTATTTGCCTAAGC+TGG + Chr2:5930329-5930348 None:intergenic 30.0%
ATAAGTTGTTTATCCAAACG+GGG - Chr2:5930672-5930691 MsG0280006760.01.T01:intron 30.0%
ATGTATGATGAATGACAAGA+GGG - Chr2:5931630-5931649 MsG0280006760.01.T01:intron 30.0%
ATTGAGAAAATGTAGGGTTT+GGG - Chr2:5931038-5931057 MsG0280006760.01.T01:intron 30.0%
CAAACATAAGCCAATTCAAA+CGG - Chr2:5930468-5930487 MsG0280006760.01.T01:intron 30.0%
CATTTGATTCTGATTATGTG+TGG - Chr2:5932481-5932500 MsG0280006760.01.T01:CDS 30.0%
CTAAATCTTCTACCAAATGA+AGG + Chr2:5930723-5930742 None:intergenic 30.0%
GAAATGACAGAAACATTACA+TGG + Chr2:5932361-5932380 None:intergenic 30.0%
GGAAAATAAGCTATTCCAAA+CGG + Chr2:5930308-5930327 None:intergenic 30.0%
GTGAATACAATCAATCAGTA+TGG + Chr2:5931594-5931613 None:intergenic 30.0%
GTGATCATACAAATTGTATC+TGG + Chr2:5931830-5931849 None:intergenic 30.0%
GTTAAACAATAATTGAGGCA+AGG + Chr2:5930044-5930063 None:intergenic 30.0%
TATAACCTTAAGCAAGATTC+CGG - Chr2:5932133-5932152 MsG0280006760.01.T01:intron 30.0%
TGTATGTTGTGTATTGCAAT+GGG - Chr2:5931887-5931906 MsG0280006760.01.T01:intron 30.0%
TTCAAATTGCTCTCTGTAAA+AGG - Chr2:5932187-5932206 MsG0280006760.01.T01:intron 30.0%
TTGTATGTTGTGTATTGCAA+TGG - Chr2:5931886-5931905 MsG0280006760.01.T01:intron 30.0%
! ACATCAGTTTTTACGAGATA+TGG + Chr2:5931327-5931346 None:intergenic 30.0%
! ATTTAGTGTCTAGAATATGG+GGG - Chr2:5930737-5930756 MsG0280006760.01.T01:intron 30.0%
! ATTTTGCAGCTTAAAGCATA+AGG + Chr2:5930654-5930673 None:intergenic 30.0%
! GATTTAGTGTCTAGAATATG+GGG - Chr2:5930736-5930755 MsG0280006760.01.T01:intron 30.0%
! TGTGTCATTGAGAAAATGTA+GGG - Chr2:5931032-5931051 MsG0280006760.01.T01:intron 30.0%
! TTTCCTTTTTGCATTCTAGA+TGG - Chr2:5932532-5932551 MsG0280006760.01.T01:CDS 30.0%
! TTTGTATGATCACTGCATTT+TGG - Chr2:5931837-5931856 MsG0280006760.01.T01:intron 30.0%
! TTTTGCAGCTTAAAGCATAA+GGG + Chr2:5930653-5930672 None:intergenic 30.0%
!! AATAGCTTATTTTCCAGCTT+AGG - Chr2:5930313-5930332 MsG0280006760.01.T01:intron 30.0%
!! TGGAAATTGAGGTTTGTTTT+GGG + Chr2:5929796-5929815 None:intergenic 30.0%
!! TTGGAAATTGAGGTTTGTTT+TGG + Chr2:5929797-5929816 None:intergenic 30.0%
!!! AATTGTACCTTTTTTGGATG+GGG - Chr2:5930999-5931018 MsG0280006760.01.T01:intron 30.0%
!!! CAATTGTACCTTTTTTGGAT+GGG - Chr2:5930998-5931017 MsG0280006760.01.T01:intron 30.0%
!!! GTTATTTTTTCCCCTTTGTA+GGG - Chr2:5931151-5931170 MsG0280006760.01.T01:intron 30.0%
!!! TCAATTGTACCTTTTTTGGA+TGG - Chr2:5930997-5931016 MsG0280006760.01.T01:intron 30.0%
!!! TGTTATTTTTTCCCCTTTGT+AGG - Chr2:5931150-5931169 MsG0280006760.01.T01:intron 30.0%
!!! TTTTATCCTCTTATTGGCTT+AGG - Chr2:5930912-5930931 MsG0280006760.01.T01:intron 30.0%
AAGCACTTGTGACACTATTT+AGG - Chr2:5930280-5930299 MsG0280006760.01.T01:intron 35.0%
AATCTTCTACCAAATGAAGG+GGG + Chr2:5930720-5930739 None:intergenic 35.0%
AATGGATCTTATAAGGGAGA+AGG + Chr2:5931480-5931499 None:intergenic 35.0%
AGAGAAAGACCCTAATTCAA+AGG + Chr2:5931111-5931130 None:intergenic 35.0%
AGCACTTGTGACACTATTTA+GGG - Chr2:5930281-5930300 MsG0280006760.01.T01:intron 35.0%
AGGCAAAAAACTATAGCATC+CGG + Chr2:5932155-5932174 None:intergenic 35.0%
ATAGCAATCACTTTGCATTG+AGG + Chr2:5931988-5932007 None:intergenic 35.0%
ATCTCGTAAAAACTGATGTG+TGG - Chr2:5931328-5931347 MsG0280006760.01.T01:intron 35.0%
CAAGGAAATCATATACCTTC+CGG + Chr2:5930026-5930045 None:intergenic 35.0%
CAATTTCCAATCGCATTTCA+AGG - Chr2:5929807-5929826 MsG0280006760.01.T01:intron 35.0%
CATTGAGAAAATGTAGGGTT+TGG - Chr2:5931037-5931056 MsG0280006760.01.T01:intron 35.0%
CTCCCTTATAAGATCCATTA+TGG - Chr2:5931481-5931500 MsG0280006760.01.T01:intron 35.0%
GAAAACAGCCATGTCAAAAT+AGG + Chr2:5932297-5932316 None:intergenic 35.0%
GATGTATGATGAATGACAAG+AGG - Chr2:5931629-5931648 MsG0280006760.01.T01:intron 35.0%
GGTAGCAGCATAAAAATAGA+AGG + Chr2:5932234-5932253 None:intergenic 35.0%
TGAAATGCGATTGGAAATTG+AGG + Chr2:5929807-5929826 None:intergenic 35.0%
TGTGACTGTTCAATTAAGCT+TGG - Chr2:5930180-5930199 MsG0280006760.01.T01:intron 35.0%
TTCATTCTCTCGCTAATCTA+CGG + Chr2:5931269-5931288 None:intergenic 35.0%
TTGTTACCTTGAAATGCGAT+TGG + Chr2:5929816-5929835 None:intergenic 35.0%
! CATCCATCTAGAATGCAAAA+AGG + Chr2:5932538-5932557 None:intergenic 35.0%
! CTGTGTCATTGAGAAAATGT+AGG - Chr2:5931031-5931050 MsG0280006760.01.T01:intron 35.0%
! GATGGATGATTGCTGTTATT+CGG - Chr2:5932550-5932569 MsG0280006760.01.T01:CDS 35.0%
! GTGGCTATGATGGAATTTAA+TGG - Chr2:5931347-5931366 MsG0280006760.01.T01:intron 35.0%
! TGATTATGTGTGGTAGTGTA+TGG - Chr2:5932491-5932510 MsG0280006760.01.T01:CDS 35.0%
! TTTAGTGTCTAGAATATGGG+GGG - Chr2:5930738-5930757 MsG0280006760.01.T01:intron 35.0%
!! ACATGGCTGTTTTCTTGTTT+AGG - Chr2:5932303-5932322 MsG0280006760.01.T01:CDS 35.0%
!! GGTTTTGTATTCAAGCTTGA+CGG - Chr2:5931858-5931877 MsG0280006760.01.T01:intron 35.0%
!!! GGTCTAGGCATTTTGAAATA+TGG + Chr2:5931527-5931546 None:intergenic 35.0%
AAAAGGCCTAAGCCAATAAG+AGG + Chr2:5930921-5930940 None:intergenic 40.0%
AAACAAAGATGGAGCCAACA+AGG + Chr2:5930966-5930985 None:intergenic 40.0%
AAACTGATGTGTGGCTATGA+TGG - Chr2:5931337-5931356 MsG0280006760.01.T01:intron 40.0%
AGACTTTACATGGTGACTCT+AGG - Chr2:5930217-5930236 MsG0280006760.01.T01:intron 40.0%
ATCTTCTACCAAATGAAGGG+GGG + Chr2:5930719-5930738 None:intergenic 40.0%
CAACCAAACAAGCGCAAAAT+CGG + Chr2:5930075-5930094 None:intergenic 40.0%
CATATTTCCATAAGCTCTCG+AGG - Chr2:5930542-5930561 MsG0280006760.01.T01:intron 40.0%
GACTTTACATGGTGACTCTA+GGG - Chr2:5930218-5930237 MsG0280006760.01.T01:intron 40.0%
GATCTTATAAGGGAGAAGGA+AGG + Chr2:5931476-5931495 None:intergenic 40.0%
GCACTTGTGACACTATTTAG+GGG - Chr2:5930282-5930301 MsG0280006760.01.T01:intron 40.0%
GGGAAAACACACAGACAATT+AGG + Chr2:5930699-5930718 None:intergenic 40.0%
GTTTAAGAGCCCGTTTGAAT+TGG + Chr2:5930481-5930500 None:intergenic 40.0%
TCTCTTGCTCTCACAATGAA+AGG - Chr2:5931126-5931145 MsG0280006760.01.T01:intron 40.0%
TGATGAATGACAAGAGGGTT+CGG - Chr2:5931635-5931654 MsG0280006760.01.T01:intron 40.0%
! ATGATTGCTGTTATTCGGTG+CGG - Chr2:5932555-5932574 MsG0280006760.01.T01:CDS 40.0%
! GAGGTTAGTCACAAATTCGA+TGG + Chr2:5931969-5931988 None:intergenic 40.0%
! TAGGCTCGTGATCACATTTT+GGG - Chr2:5932322-5932341 MsG0280006760.01.T01:CDS 40.0%
! TTAGGCTCGTGATCACATTT+TGG - Chr2:5932321-5932340 MsG0280006760.01.T01:CDS 40.0%
! TTTGTTGTGTAGATTGCCAG+TGG - Chr2:5929896-5929915 MsG0280006760.01.T01:intron 40.0%
!! GTTCGGGCAAAGTTTTATGT+AGG - Chr2:5931652-5931671 MsG0280006760.01.T01:intron 40.0%
!!! TGCAACACCCTATTTTGACA+TGG - Chr2:5932286-5932305 MsG0280006760.01.T01:intron 40.0%
AACATTGAGCATGCAGGTCT+AGG + Chr2:5929767-5929786 None:intergenic 45.0%
AAGCTATCCTCGAGAGCTTA+TGG + Chr2:5930552-5930571 None:intergenic 45.0%
AGCATCCGGAATCTTGCTTA+AGG + Chr2:5932141-5932160 None:intergenic 45.0%
AGTCTTCTCTTGCCCTACAA+AGG + Chr2:5931166-5931185 None:intergenic 45.0%
ATCCGAAACATTGAGCATGC+AGG + Chr2:5929773-5929792 None:intergenic 45.0%
GAAGCTGTTGCAGTGTGATA+TGG + Chr2:5929951-5929970 None:intergenic 45.0%
GACCTGCATGCTCAATGTTT+CGG - Chr2:5929768-5929787 MsG0280006760.01.T01:intron 45.0%
GATGAATGACAAGAGGGTTC+GGG - Chr2:5931636-5931655 MsG0280006760.01.T01:intron 45.0%
GCATCAAAGATGGTGTGACA+TGG - Chr2:5931199-5931218 MsG0280006760.01.T01:intron 45.0%
GTCTTCTCTTGCCCTACAAA+GGG + Chr2:5931165-5931184 None:intergenic 45.0%
TCAGTTTCTCGCCACTCTTA+CGG - Chr2:5929993-5930012 MsG0280006760.01.T01:intron 45.0%
TCTTCTCTTGCCCTACAAAG+GGG + Chr2:5931164-5931183 None:intergenic 45.0%
TGAAGAGCGAGCATCAAAGA+TGG - Chr2:5931189-5931208 MsG0280006760.01.T01:intron 45.0%
TTCATTGCGCGTACTTTCTG+TGG - Chr2:5932578-5932597 MsG0280006760.01.T01:exon 45.0%
TTTCCCTCCCCATCCAAAAA+AGG + Chr2:5931009-5931028 None:intergenic 45.0%
! AGGCTCGTGATCACATTTTG+GGG - Chr2:5932323-5932342 MsG0280006760.01.T01:CDS 45.0%
! ATGTAGGTGCGCTCTGAATA+AGG - Chr2:5931668-5931687 MsG0280006760.01.T01:intron 45.0%
! TGTGTTTTCCCCCCTTCATT+TGG - Chr2:5930708-5930727 MsG0280006760.01.T01:intron 45.0%
!!! GTACCTTTTTTGGATGGGGA+GGG - Chr2:5931003-5931022 MsG0280006760.01.T01:intron 45.0%
!!! GTGATCACATTTTGGGGCTT+GGG - Chr2:5932329-5932348 MsG0280006760.01.T01:CDS 45.0%
!!! TGATCACATTTTGGGGCTTG+GGG - Chr2:5932330-5932349 MsG0280006760.01.T01:CDS 45.0%
!!! TGTACCTTTTTTGGATGGGG+AGG - Chr2:5931002-5931021 MsG0280006760.01.T01:intron 45.0%
ACATCGTTAGGGACGAACAC+CGG + Chr2:5929682-5929701 None:intergenic 50.0%
CAGACAATTAGGACCCCGTT+TGG + Chr2:5930688-5930707 None:intergenic 50.0%
GACACTATTTAGGGGCCGTT+TGG - Chr2:5930290-5930309 MsG0280006760.01.T01:intron 50.0%
TGAGCATGCAGGTCTAGGTT+TGG + Chr2:5929762-5929781 None:intergenic 50.0%
TGGAAGCAAAGATTCGACGC+CGG + Chr2:5929931-5929950 None:intergenic 50.0%
TTGCCAGTGGAGATGAGTTC+CGG - Chr2:5929909-5929928 MsG0280006760.01.T01:intron 50.0%
!! TGGTGACTCTAGGGCTTGTT+TGG - Chr2:5930227-5930246 MsG0280006760.01.T01:intron 50.0%
!!! CGTGATCACATTTTGGGGCT+TGG - Chr2:5932328-5932347 MsG0280006760.01.T01:CDS 50.0%
!!! TCGCCGATTTTGCGCTTGTT+TGG - Chr2:5930069-5930088 MsG0280006760.01.T01:intron 50.0%
AAGGAAGGAGACAGAGGGAG+AGG + Chr2:5931461-5931480 None:intergenic 55.0%
AGGGAGAAGGAAGGAGACAG+AGG + Chr2:5931467-5931486 None:intergenic 55.0%
ATCTGGCGGCTGACATCGTT+AGG + Chr2:5929694-5929713 None:intergenic 55.0%
GGGAGAAGGAAGGAGACAGA+GGG + Chr2:5931466-5931485 None:intergenic 55.0%
TCTGGCGGCTGACATCGTTA+GGG + Chr2:5929693-5929712 None:intergenic 55.0%
TTTCTCGCCACTCTTACGGC+TGG - Chr2:5929997-5930016 MsG0280006760.01.T01:intron 55.0%
! TGCAGGTCTAGGTTTGGCTC+CGG + Chr2:5929756-5929775 None:intergenic 55.0%
ACGCCGGAACTCATCTCCAC+TGG + Chr2:5929915-5929934 None:intergenic 60.0%
CCACTCTTACGGCTGGACTC+CGG - Chr2:5930004-5930023 MsG0280006760.01.T01:intron 60.0%
GGGACGAACACCGGAGGTTA+TGG + Chr2:5929673-5929692 None:intergenic 60.0%
TCGTTAGGGACGAACACCGG+AGG + Chr2:5929679-5929698 None:intergenic 60.0%
TCTTACGGCTGGACTCCGGA+AGG - Chr2:5930008-5930027 MsG0280006760.01.T01:intron 60.0%
!! GGAGCGAAGGAAGCATCTGG+CGG + Chr2:5929708-5929727 None:intergenic 60.0%
CCGGAGTCCAGCCGTAAGAG+TGG + Chr2:5930007-5930026 None:intergenic 65.0%
! AGCCAGGTTGGCGCGAGAAG+CGG + Chr2:5929732-5929751 None:intergenic 65.0%
! TAGGTTTGGCTCCGGCAGCC+AGG + Chr2:5929748-5929767 None:intergenic 65.0%
! TTTGGCTCCGGCAGCCAGGT+TGG + Chr2:5929744-5929763 None:intergenic 65.0%
!! GGCGGAGCGAAGGAAGCATC+TGG + Chr2:5929711-5929730 None:intergenic 65.0%
TCTCGCGCCAACCTGGCTGC+CGG - Chr2:5929734-5929753 MsG0280006760.01.T01:intron 70.0%
! CAGGTTGGCGCGAGAAGCGG+CGG + Chr2:5929729-5929748 None:intergenic 70.0%
CGCCGCTTCTCGCGCCAACC+TGG - Chr2:5929727-5929746 MsG0280006760.01.T01:intron 75.0%
CGCGAGAAGCGGCGGAGCGA+AGG + Chr2:5929721-5929740 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 5929669 5932619 5929669 ID=MsG0280006760.01;Name=MsG0280006760.01
Chr2 mRNA 5929669 5932619 5929669 ID=MsG0280006760.01.T01;Parent=MsG0280006760.01;Name=MsG0280006760.01.T01;_AED=0.47;_eAED=0.57;_QI=29|0.33|0.25|1|0|0|4|0|108
Chr2 exon 5929669 5929737 5929669 ID=MsG0280006760.01.T01:exon:2400;Parent=MsG0280006760.01.T01
Chr2 exon 5931078 5931116 5931078 ID=MsG0280006760.01.T01:exon:2399;Parent=MsG0280006760.01.T01
Chr2 exon 5932293 5932380 5932293 ID=MsG0280006760.01.T01:exon:2398;Parent=MsG0280006760.01.T01
Chr2 exon 5932460 5932619 5932460 ID=MsG0280006760.01.T01:exon:2397;Parent=MsG0280006760.01.T01
Chr2 five_prime_UTR 5932591 5932619 5932591 ID=MsG0280006760.01.T01:five_prime_utr;Parent=MsG0280006760.01.T01
Chr2 CDS 5932460 5932590 5932460 ID=MsG0280006760.01.T01:cds;Parent=MsG0280006760.01.T01
Chr2 CDS 5932293 5932380 5932293 ID=MsG0280006760.01.T01:cds;Parent=MsG0280006760.01.T01
Chr2 CDS 5931078 5931116 5931078 ID=MsG0280006760.01.T01:cds;Parent=MsG0280006760.01.T01
Chr2 CDS 5929669 5929737 5929669 ID=MsG0280006760.01.T01:cds;Parent=MsG0280006760.01.T01
Gene Sequence

>MsG0280006760.01.T01

ATGTCAGCCGCCAGATGCTTCCTTCGCTCCGCCGCTTCTCGCGCCAACCTGGCTGCCGGAGCCAAACCTAGACCTGCATGCTCAATGTTTCGGATCCCAAAACAAACCTCAATTTCCAATCGCATTTCAAGATTGCCAGTGGAGATGAGTTCCGGCGTCGAATCTTTGCTTCCATATCACACTGCAACAGCTTCTGCATTGCTCACTTCAATGCTTTCAGGCAAGAGAAGACTAGATGAAGAGCGAGCATCAAAGATGATGGATGATTGCTGTTATTCGGTGCGGTTCATTGCGCGTACTTTCTGTGGATTTCAGTTTACTTGTTAG
Protein sequence

>MsG0280006760.01.T01

MSAARCFLRSAASRANLAAGAKPRPACSMFRIPKQTSISNRISRLPVEMSSGVESLLPYHTATASALLTSMLSGKRRLDEERASKMMDDCCYSVRFIARTFCGFQFTC*