AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045608.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045608.01.T02 MTR_8g075190 98.864 264 2 1 1 263 1 264 0.0 530
MsG0880045608.01.T02 MTR_4g091100 33.884 121 67 2 98 218 53 160 1.18e-15 72.8
MsG0880045608.01.T02 MTR_2g011800 32.743 113 51 3 106 218 21 108 1.12e-12 63.5
MsG0880045608.01.T01 MTR_8g075190 98.864 264 2 1 1 263 1 264 0.0 530
MsG0880045608.01.T01 MTR_4g091100 33.884 121 67 2 98 218 53 160 1.18e-15 72.8
MsG0880045608.01.T01 MTR_2g011800 32.743 113 51 3 106 218 21 108 1.12e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045608.01.T02 AT4G35930 51.701 294 88 7 23 262 27 320 8.87e-90 269
MsG0880045608.01.T02 AT4G35930 51.525 295 88 8 23 262 27 321 3.95e-88 265
MsG0880045608.01.T02 AT4G35930 51.525 295 88 8 23 262 27 321 3.95e-88 265
MsG0880045608.01.T02 AT4G35930 48.529 204 55 4 23 176 27 230 1.69e-52 172
MsG0880045608.01.T02 AT1G61340 46.875 64 33 1 95 158 69 131 1.16e-13 68.2
MsG0880045608.01.T02 AT1G61340 46.875 64 33 1 95 158 69 131 1.16e-13 68.2
MsG0880045608.01.T01 AT4G35930 51.701 294 88 7 23 262 27 320 8.87e-90 269
MsG0880045608.01.T01 AT4G35930 51.525 295 88 8 23 262 27 321 3.95e-88 265
MsG0880045608.01.T01 AT4G35930 51.525 295 88 8 23 262 27 321 3.95e-88 265
MsG0880045608.01.T01 AT4G35930 48.529 204 55 4 23 176 27 230 1.69e-52 172
MsG0880045608.01.T01 AT1G61340 46.875 64 33 1 95 158 69 131 1.16e-13 68.2
MsG0880045608.01.T01 AT1G61340 46.875 64 33 1 95 158 69 131 1.16e-13 68.2

Find 49 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACTTTCTCTCTCTGATTT+AGG 0.081567 8:+61710432 MsG0880045608.01.T01:five_prime_UTR
GATGCTTTCGCCGGTGAATT+TGG 0.162356 8:+61710886 MsG0880045608.01.T01:CDS
CACTTTCTCTCTCTGATTTA+GGG 0.162658 8:+61710433 MsG0880045608.01.T01:five_prime_UTR
GTCTCTTCCCATTGATTTAT+TGG 0.178375 8:+61710982 MsG0880045608.01.T01:CDS
CTTCGGTGTAGCAAGTATTT+AGG 0.244572 8:+61710749 MsG0880045608.01.T01:CDS
GGTAGGGTTTGTAATGATAT+TGG 0.294679 8:+61710788 MsG0880045608.01.T01:CDS
CGAAGCTGAGCTAGGGTTCC+AGG 0.295787 8:-61710731 None:intergenic
TTCAAAACGCATGAAGAAAA+AGG 0.310941 8:-61710511 None:intergenic
GTAGGGTTTGTAATGATATT+GGG 0.326687 8:+61710789 MsG0880045608.01.T01:CDS
CTGATTCAATTCAATTCAAT+GGG 0.334078 8:+61710638 MsG0880045608.01.T01:exon
GCTGATTCAATTCAATTCAA+TGG 0.350969 8:+61710637 MsG0880045608.01.T01:exon
GGTTCCAGGTTTCAAATACT+TGG 0.417983 8:-61710717 None:intergenic
TGTAGCAAGTATTTAGGTTC+CGG 0.422435 8:+61710755 MsG0880045608.01.T01:CDS
ATGAGTGTCAATCGGAATCT+AGG 0.428539 8:+61710954 MsG0880045608.01.T01:CDS
CATGCATACCAATAAATCAA+TGG 0.435349 8:-61710990 None:intergenic
TCATCAATCCTCGGGGTCTT+CGG 0.435935 8:-61710935 None:intergenic
AGGAGAAAATCGAAGAAATC+TGG 0.437025 8:+61710692 MsG0880045608.01.T01:CDS
GTTCCGGATCGGGTGCTGGT+AGG 0.437816 8:+61710771 MsG0880045608.01.T01:CDS
AACCCTACCAGCACCCGATC+CGG 0.442788 8:-61710774 None:intergenic
AAGTATTTAGGTTCCGGATC+GGG 0.456904 8:+61710761 MsG0880045608.01.T01:CDS
TTAGGTTCCGGATCGGGTGC+TGG 0.466871 8:+61710767 MsG0880045608.01.T01:CDS
TTCCGGATCGGGTGCTGGTA+GGG 0.473174 8:+61710772 MsG0880045608.01.T01:CDS
ATGCATACCAATAAATCAAT+GGG 0.482096 8:-61710989 None:intergenic
ACGACGACGGAGAAAAGAAA+AGG 0.486371 8:+61710668 MsG0880045608.01.T01:CDS
TTTGAATTTGGAGAAGAATG+AGG 0.487276 8:+61710829 MsG0880045608.01.T01:CDS
ATTGACACTCATCAATCCTC+GGG 0.488809 8:-61710943 None:intergenic
GAATGAGGGTCATGAAGGTA+AGG 0.502404 8:+61710844 MsG0880045608.01.T01:CDS
TTAAACAGAGTAGTTCTGTT+GGG 0.526691 8:+61710909 MsG0880045608.01.T01:CDS
CTGGAACCCTAGCTCAGCTT+CGG 0.543663 8:+61710732 MsG0880045608.01.T01:CDS
GTTAAACAGAGTAGTTCTGT+TGG 0.544516 8:+61710908 MsG0880045608.01.T01:CDS
CTCTGTTTAACCAAATTCAC+CGG 0.544759 8:-61710896 None:intergenic
TGCTACACCGAAGCTGAGCT+AGG 0.545459 8:-61710739 None:intergenic
GAGGATTGATGAGTGTCAAT+CGG 0.547013 8:+61710946 MsG0880045608.01.T01:CDS
TTGAATTTGGAGAAGAATGA+GGG 0.549112 8:+61710830 MsG0880045608.01.T01:CDS
GATTGACACTCATCAATCCT+CGG 0.558517 8:-61710944 None:intergenic
GAGAAGAATGAGGGTCATGA+AGG 0.559177 8:+61710839 MsG0880045608.01.T01:CDS
CGACGACGGAGAAAAGAAAA+GGG 0.561832 8:+61710669 MsG0880045608.01.T01:CDS
CAAGTATTTAGGTTCCGGAT+CGG 0.563636 8:+61710760 MsG0880045608.01.T01:CDS
GGTACCAAGTATTTGAAACC+TGG 0.579551 8:+61710713 MsG0880045608.01.T01:CDS
ATCAGAGAGAGAAAGTGAGA+GGG 0.581129 8:-61710427 None:intergenic
AATCAGAGAGAGAAAGTGAG+AGG 0.591022 8:-61710428 None:intergenic
AAGTCCGCTGATGCTTTCGC+CGG 0.607611 8:+61710877 MsG0880045608.01.T01:CDS
GCTACACCGAAGCTGAGCTA+GGG 0.609640 8:-61710738 None:intergenic
TTCACCGGCGAAAGCATCAG+CGG 0.630148 8:-61710881 None:intergenic
AATGGGGAAAGTGACGACGA+CGG 0.651856 8:+61710655 MsG0880045608.01.T01:exon
CGACGGAGAAAAGAAAAGGG+AGG 0.678044 8:+61710672 MsG0880045608.01.T01:CDS
TGATTCAATTCAATTCAATG+GGG 0.690978 8:+61710639 MsG0880045608.01.T01:exon
TTGGGACGCCGAAGACCCCG+AGG 0.698934 8:+61710927 MsG0880045608.01.T01:CDS
TTGACACTCATCAATCCTCG+GGG 0.722658 8:-61710942 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATTATGAAGCATATA+AGG + Chr8:61711865-61711884 MsG0880045608.01.T01:intron 15.0%
!! ATCAATTGAATATAGTAAAA+TGG - Chr8:61711981-61712000 None:intergenic 15.0%
!!! ATTTTATTATGATAAGTATC+TGG + Chr8:61711094-61711113 MsG0880045608.01.T01:intron 15.0%
!! AAAAAATTGGAGATTGAAAA+TGG - Chr8:61710473-61710492 None:intergenic 20.0%
!! AATATCTAGACTAATTTGAT+GGG - Chr8:61711442-61711461 None:intergenic 20.0%
!! ATCTTCTTTATTAGTAAAGA+AGG + Chr8:61712967-61712986 MsG0880045608.01.T01:three_prime_UTR 20.0%
!! CTCAAATTATGAAAGAAAAT+GGG - Chr8:61712069-61712088 None:intergenic 20.0%
!! TAATATCTAGACTAATTTGA+TGG - Chr8:61711443-61711462 None:intergenic 20.0%
!! TCAAATTATGAAAGAAAATG+GGG - Chr8:61712068-61712087 None:intergenic 20.0%
!!! ATCAAATTAGTCTAGATATT+AGG + Chr8:61711442-61711461 MsG0880045608.01.T01:intron 20.0%
!!! ATGATTTTGAGTGTTAATAT+TGG + Chr8:61711373-61711392 MsG0880045608.01.T01:intron 20.0%
!!! TATTCAATTTTCAACCTTAT+AGG + Chr8:61711306-61711325 MsG0880045608.01.T01:intron 20.0%
!!! TGATTTTGAGTGTTAATATT+GGG + Chr8:61711374-61711393 MsG0880045608.01.T01:intron 20.0%
!!! TTATTTTCAGAAACAATTGA+AGG + Chr8:61712944-61712963 MsG0880045608.01.T01:three_prime_UTR 20.0%
!!! TTCTTGTTCTTGTTTTTTTA+GGG + Chr8:61710602-61710621 MsG0880045608.01.T01:intron 20.0%
! AAAAGAACTATACAAAGTGA+AGG - Chr8:61712741-61712760 None:intergenic 25.0%
! AAAGAACTATACAAAGTGAA+GGG - Chr8:61712740-61712759 None:intergenic 25.0%
! ACATAGAATCTTCAAAATCA+GGG - Chr8:61711404-61711423 None:intergenic 25.0%
! ACTCACATGAAGAAAAAAAT+TGG - Chr8:61710486-61710505 None:intergenic 25.0%
! AGACATGATTTAAAAATCAC+AGG - Chr8:61712410-61712429 None:intergenic 25.0%
! ATGATAAGTATCTGGATTAA+AGG + Chr8:61711102-61711121 MsG0880045608.01.T01:intron 25.0%
! ATGCATACCAATAAATCAAT+GGG - Chr8:61710992-61711011 None:intergenic 25.0%
! ATTTAATTACTCGCGATTAA+TGG + Chr8:61711029-61711048 MsG0880045608.01.T01:intron 25.0%
! CCTCAAATTATGAAAGAAAA+TGG - Chr8:61712070-61712089 None:intergenic 25.0%
! CTGATTCAATTCAATTCAAT+GGG + Chr8:61710638-61710657 MsG0880045608.01.T01:exon 25.0%
! GTTGATATTGTGGAATATTA+GGG + Chr8:61711164-61711183 MsG0880045608.01.T01:intron 25.0%
! TGATTCAATTCAATTCAATG+GGG + Chr8:61710639-61710658 MsG0880045608.01.T01:exon 25.0%
! TTAGTCTAGATATTAGGTTA+AGG + Chr8:61711448-61711467 MsG0880045608.01.T01:intron 25.0%
!! CCATTTTCTTTCATAATTTG+AGG + Chr8:61712067-61712086 MsG0880045608.01.T01:intron 25.0%
!! CTAACTTTTGTAGTGTTTTT+AGG + Chr8:61712247-61712266 MsG0880045608.01.T01:intron 25.0%
!! TTAAAATGATTGTCCTTTTG+TGG + Chr8:61711139-61711158 MsG0880045608.01.T01:intron 25.0%
!! TTCTAATTCTTTGAGAAACA+TGG - Chr8:61712139-61712158 None:intergenic 25.0%
!!! ACTTGTTTTTATTTGGCATT+TGG + Chr8:61711066-61711085 MsG0880045608.01.T01:intron 25.0%
!!! CACTTTGTATAGTTCTTTTT+TGG + Chr8:61712742-61712761 MsG0880045608.01.T01:three_prime_UTR 25.0%
!!! GATTTTGAGTGTTAATATTG+GGG + Chr8:61711375-61711394 MsG0880045608.01.T01:intron 25.0%
!!! GTGTTTTTGATTGTTTTGAT+TGG + Chr8:61711834-61711853 MsG0880045608.01.T01:intron 25.0%
!!! GTTCTTGTTCTTGTTTTTTT+AGG + Chr8:61710601-61710620 MsG0880045608.01.T01:intron 25.0%
!!! TAGTCGAACTTGTTTTTATT+TGG + Chr8:61711059-61711078 MsG0880045608.01.T01:intron 25.0%
!!! TTTTTAGTATTTGCCTTTGT+GGG + Chr8:61711588-61711607 MsG0880045608.01.T01:intron 25.0%
!!! TTTTTTAGTATTTGCCTTTG+TGG + Chr8:61711587-61711606 MsG0880045608.01.T01:intron 25.0%
AATCACAGGAAAGAGATAAT+TGG - Chr8:61712396-61712415 None:intergenic 30.0%
ACCACTTCAATTCATCTAAA+AGG - Chr8:61712209-61712228 None:intergenic 30.0%
AGAAATACTTACCACAGAAA+AGG - Chr8:61712371-61712390 None:intergenic 30.0%
CACATAGAATCTTCAAAATC+AGG - Chr8:61711405-61711424 None:intergenic 30.0%
CATGCATACCAATAAATCAA+TGG - Chr8:61710993-61711012 None:intergenic 30.0%
CGTTGATATTGTGGAATATT+AGG + Chr8:61711163-61711182 MsG0880045608.01.T01:intron 30.0%
GTAGGGTTTGTAATGATATT+GGG + Chr8:61710789-61710808 MsG0880045608.01.T01:CDS 30.0%
TCAAGAATCACAATCCTATA+AGG - Chr8:61711323-61711342 None:intergenic 30.0%
TGGATTAAAGGTTGAGAATT+GGG + Chr8:61711114-61711133 MsG0880045608.01.T01:intron 30.0%
TTCAAAACGCATGAAGAAAA+AGG - Chr8:61710514-61710533 None:intergenic 30.0%
TTGAATTTGGAGAAGAATGA+GGG + Chr8:61710830-61710849 MsG0880045608.01.T01:CDS 30.0%
TTTGAATTTGGAGAAGAATG+AGG + Chr8:61710829-61710848 MsG0880045608.01.T01:CDS 30.0%
! AAGAGTTGAGCTTTTGAATT+TGG + Chr8:61710817-61710836 MsG0880045608.01.T01:CDS 30.0%
! ACAATTTTGTAGTCTGTGTT+GGG + Chr8:61712794-61712813 MsG0880045608.01.T01:three_prime_UTR 30.0%
! AGACAAAAAAGCATGAGAAA+AGG - Chr8:61711348-61711367 None:intergenic 30.0%
! AGGGAAATACTGTATTGTTT+TGG + Chr8:61711678-61711697 MsG0880045608.01.T01:intron 30.0%
! GCTGATTCAATTCAATTCAA+TGG + Chr8:61710637-61710656 MsG0880045608.01.T01:exon 30.0%
! TACAATTTTGTAGTCTGTGT+TGG + Chr8:61712793-61712812 MsG0880045608.01.T01:three_prime_UTR 30.0%
! TCCTTTTAGATGAATTGAAG+TGG + Chr8:61712205-61712224 MsG0880045608.01.T01:intron 30.0%
! TTAAACAGAGTAGTTCTGTT+GGG + Chr8:61710909-61710928 MsG0880045608.01.T01:CDS 30.0%
!! CTGATTTTGAAGATTCTATG+TGG + Chr8:61711403-61711422 MsG0880045608.01.T01:intron 30.0%
!!! CTATAATTTTTTTCCAGCAG+GGG + Chr8:61712438-61712457 MsG0880045608.01.T01:intron 30.0%
!!! GCTATAATTTTTTTCCAGCA+GGG + Chr8:61712437-61712456 MsG0880045608.01.T01:intron 30.0%
!!! GTAGTGTTTTTAGGTTATTG+TGG + Chr8:61712256-61712275 MsG0880045608.01.T01:intron 30.0%
!!! TGCTATAATTTTTTTCCAGC+AGG + Chr8:61712436-61712455 MsG0880045608.01.T01:intron 30.0%
AAACAGCTCTCAATTGATCA+TGG - Chr8:61712115-61712134 None:intergenic 35.0%
ACAATATCAACGACCACAAA+AGG - Chr8:61711155-61711174 None:intergenic 35.0%
ACACAAGCAAGAATAAACAG+AGG - Chr8:61711736-61711755 None:intergenic 35.0%
AGGAGAAAATCGAAGAAATC+TGG + Chr8:61710692-61710711 MsG0880045608.01.T01:CDS 35.0%
CACTTTCTCTCTCTGATTTA+GGG + Chr8:61710433-61710452 MsG0880045608.01.T01:five_prime_UTR 35.0%
CTCTGTTTAACCAAATTCAC+CGG - Chr8:61710899-61710918 None:intergenic 35.0%
CTGGATTAAAGGTTGAGAAT+TGG + Chr8:61711113-61711132 MsG0880045608.01.T01:intron 35.0%
GATATTCCTGATGTCCAATT+AGG + Chr8:61712835-61712854 MsG0880045608.01.T01:three_prime_UTR 35.0%
GGTAGGGTTTGTAATGATAT+TGG + Chr8:61710788-61710807 MsG0880045608.01.T01:CDS 35.0%
TCACTTTCTCTCTCTGATTT+AGG + Chr8:61710432-61710451 MsG0880045608.01.T01:five_prime_UTR 35.0%
TCATAGTCATATAAGCAGCA+GGG - Chr8:61712182-61712201 None:intergenic 35.0%
TTCATAGTCATATAAGCAGC+AGG - Chr8:61712183-61712202 None:intergenic 35.0%
! AATTTTGTAGTCTGTGTTGG+GGG + Chr8:61712796-61712815 MsG0880045608.01.T01:three_prime_UTR 35.0%
! CAATTTTGTAGTCTGTGTTG+GGG + Chr8:61712795-61712814 MsG0880045608.01.T01:three_prime_UTR 35.0%
! GCTTGTGTTTGTTGATTGTA+TGG + Chr8:61711748-61711767 MsG0880045608.01.T01:intron 35.0%
! GTTAAACAGAGTAGTTCTGT+TGG + Chr8:61710908-61710927 MsG0880045608.01.T01:CDS 35.0%
! TGTAGCAAGTATTTAGGTTC+CGG + Chr8:61710755-61710774 MsG0880045608.01.T01:CDS 35.0%
! TTTTGTGGTCGTTGATATTG+TGG + Chr8:61711154-61711173 MsG0880045608.01.T01:intron 35.0%
!! AGCTGTTCTTTTCAAGGAAT+CGG + Chr8:61712566-61712585 MsG0880045608.01.T01:CDS 35.0%
!! GTCTCTTCCCATTGATTTAT+TGG + Chr8:61710982-61711001 MsG0880045608.01.T01:CDS 35.0%
!!! GTTTTTAGGTTATTGTGGCA+AGG + Chr8:61712261-61712280 MsG0880045608.01.T01:intron 35.0%
!!! TTTTGGTTTCTAGTGAATGC+TGG + Chr8:61712759-61712778 MsG0880045608.01.T01:three_prime_UTR 35.0%
ACTGCAAGTGATCTCAACAA+AGG - Chr8:61711274-61711293 None:intergenic 40.0%
ACTGTGATGAAGCACACAAA+GGG + Chr8:61711659-61711678 MsG0880045608.01.T01:intron 40.0%
ATGAGTGTCAATCGGAATCT+AGG + Chr8:61710954-61710973 MsG0880045608.01.T01:CDS 40.0%
ATTAGGGTCAGCTGTAATTG+CGG + Chr8:61711180-61711199 MsG0880045608.01.T01:intron 40.0%
ATTGACACTCATCAATCCTC+GGG - Chr8:61710946-61710965 None:intergenic 40.0%
CAAATCACTGAAACCCACAA+AGG - Chr8:61711604-61711623 None:intergenic 40.0%
CTGTGAAGATGAACTATGCA+AGG + Chr8:61712668-61712687 MsG0880045608.01.T01:CDS 40.0%
GAGGATTGATGAGTGTCAAT+CGG + Chr8:61710946-61710965 MsG0880045608.01.T01:CDS 40.0%
GATTGACACTCATCAATCCT+CGG - Chr8:61710947-61710966 None:intergenic 40.0%
GGTTCCAGGTTTCAAATACT+TGG - Chr8:61710720-61710739 None:intergenic 40.0%
GTCGCATCTCAGAAACTTTA+AGG - Chr8:61712539-61712558 None:intergenic 40.0%
TACTGTGATGAAGCACACAA+AGG + Chr8:61711658-61711677 MsG0880045608.01.T01:intron 40.0%
! AAGTATTTAGGTTCCGGATC+GGG + Chr8:61710761-61710780 MsG0880045608.01.T01:CDS 40.0%
! AGGCAGCAACATCAAGATTT+TGG - Chr8:61711221-61711240 None:intergenic 40.0%
! CAAGTATTTAGGTTCCGGAT+CGG + Chr8:61710760-61710779 MsG0880045608.01.T01:CDS 40.0%
! CTTCGGTGTAGCAAGTATTT+AGG + Chr8:61710749-61710768 MsG0880045608.01.T01:CDS 40.0%
! GGTACCAAGTATTTGAAACC+TGG + Chr8:61710713-61710732 MsG0880045608.01.T01:CDS 40.0%
! GGTTACAGCTGTTCTTTTCA+AGG + Chr8:61712560-61712579 MsG0880045608.01.T01:CDS 40.0%
!! TAAAGTTTCTGAGATGCGAC+AGG + Chr8:61712539-61712558 MsG0880045608.01.T01:CDS 40.0%
!! TCAGAAACTTTAAGGCGAGA+AGG - Chr8:61712531-61712550 None:intergenic 40.0%
ACGACGACGGAGAAAAGAAA+AGG + Chr8:61710668-61710687 MsG0880045608.01.T01:CDS 45.0%
AGAAAAGGCCAATGCTCAGA+AGG - Chr8:61712356-61712375 None:intergenic 45.0%
CGACGACGGAGAAAAGAAAA+GGG + Chr8:61710669-61710688 MsG0880045608.01.T01:CDS 45.0%
CTCTCAATTGATCATGGTGC+AGG - Chr8:61712109-61712128 None:intergenic 45.0%
GAATGAGGGTCATGAAGGTA+AGG + Chr8:61710844-61710863 MsG0880045608.01.T01:CDS 45.0%
GAGAAGAATGAGGGTCATGA+AGG + Chr8:61710839-61710858 MsG0880045608.01.T01:CDS 45.0%
GATGTCCAATTAGGTGTGGA+GGG + Chr8:61712844-61712863 MsG0880045608.01.T01:three_prime_UTR 45.0%
GATGTTGCTGCCTCAAATTG+CGG + Chr8:61711228-61711247 MsG0880045608.01.T01:intron 45.0%
TCCACACCTAATTGGACATC+AGG - Chr8:61712844-61712863 None:intergenic 45.0%
TCCTGATGTCCAATTAGGTG+TGG + Chr8:61712840-61712859 MsG0880045608.01.T01:three_prime_UTR 45.0%
TGATGTCCAATTAGGTGTGG+AGG + Chr8:61712843-61712862 MsG0880045608.01.T01:three_prime_UTR 45.0%
TTGACACTCATCAATCCTCG+GGG - Chr8:61710945-61710964 None:intergenic 45.0%
! TGGGGCTTTGGTATAACTGA+TGG - Chr8:61712615-61712634 None:intergenic 45.0%
!! AGAAGCCACTGATTTGCACT+GGG - Chr8:61712634-61712653 None:intergenic 45.0%
!! GAAACTTTAAGGCGAGAAGG+AGG - Chr8:61712528-61712547 None:intergenic 45.0%
!! TAGAAGCCACTGATTTGCAC+TGG - Chr8:61712635-61712654 None:intergenic 45.0%
!!! TTTTTTCCAGCAGGGGTGAT+GGG + Chr8:61712445-61712464 MsG0880045608.01.T01:intron 45.0%
!!! TTTTTTTCCAGCAGGGGTGA+TGG + Chr8:61712444-61712463 MsG0880045608.01.T01:intron 45.0%
AAAGCCCCAGTGCAAATCAG+TGG + Chr8:61712626-61712645 MsG0880045608.01.T01:CDS 50.0%
AATGGGGAAAGTGACGACGA+CGG + Chr8:61710655-61710674 MsG0880045608.01.T01:exon 50.0%
ATACTACCCCAGATCGCTCT+CGG + Chr8:61712300-61712319 MsG0880045608.01.T01:CDS 50.0%
CGACGGAGAAAAGAAAAGGG+AGG + Chr8:61710672-61710691 MsG0880045608.01.T01:CDS 50.0%
CGATCCATAGCCGCAATTTG+AGG - Chr8:61711241-61711260 None:intergenic 50.0%
GATGCTTTCGCCGGTGAATT+TGG + Chr8:61710886-61710905 MsG0880045608.01.T01:CDS 50.0%
TCATCAATCCTCGGGGTCTT+CGG - Chr8:61710938-61710957 None:intergenic 50.0%
TCCAATTAGGTGTGGAGGGT+CGG + Chr8:61712848-61712867 MsG0880045608.01.T01:three_prime_UTR 50.0%
! ACACCTAAAGCACCTCGTCA+TGG + Chr8:61712495-61712514 MsG0880045608.01.T01:CDS 50.0%
! CACCTAAAGCACCTCGTCAT+GGG + Chr8:61712496-61712515 MsG0880045608.01.T01:CDS 50.0%
! CGAGGTGCTTTAGGTGTATG+CGG - Chr8:61712492-61712511 None:intergenic 50.0%
! GAGGTGCTTTAGGTGTATGC+GGG - Chr8:61712491-61712510 None:intergenic 50.0%
!! ACTGATTTGCACTGGGGCTT+TGG - Chr8:61712627-61712646 None:intergenic 50.0%
!! GAAGCCACTGATTTGCACTG+GGG - Chr8:61712633-61712652 None:intergenic 50.0%
!!! CTGAGCATTGGCCTTTTCTG+TGG + Chr8:61712357-61712376 MsG0880045608.01.T01:CDS 50.0%
AAGTCCGCTGATGCTTTCGC+CGG + Chr8:61710877-61710896 MsG0880045608.01.T01:CDS 55.0%
ATCTCTAGCCGAGAGCGATC+TGG - Chr8:61712311-61712330 None:intergenic 55.0%
CTCCTCGTCCTTCTGAGCAT+TGG + Chr8:61712345-61712364 MsG0880045608.01.T01:CDS 55.0%
CTGGAACCCTAGCTCAGCTT+CGG + Chr8:61710732-61710751 MsG0880045608.01.T01:CDS 55.0%
GCTACACCGAAGCTGAGCTA+GGG - Chr8:61710741-61710760 None:intergenic 55.0%
GCTGCCTCAAATTGCGGCTA+TGG + Chr8:61711234-61711253 MsG0880045608.01.T01:intron 55.0%
GGCTTTCGCTTCTCGTTGCA+TGG + Chr8:61712587-61712606 MsG0880045608.01.T01:CDS 55.0%
TCTCTAGCCGAGAGCGATCT+GGG - Chr8:61712310-61712329 None:intergenic 55.0%
TGCTACACCGAAGCTGAGCT+AGG - Chr8:61710742-61710761 None:intergenic 55.0%
TGGGGGCAGTTTAGCTGGTA+TGG + Chr8:61712813-61712832 MsG0880045608.01.T01:three_prime_UTR 55.0%
TGTGTTGGGGGCAGTTTAGC+TGG + Chr8:61712808-61712827 MsG0880045608.01.T01:three_prime_UTR 55.0%
TTAAGGCGAGAAGGAGGTCG+AGG - Chr8:61712522-61712541 None:intergenic 55.0%
! GCTTTAGGTGTATGCGGGCT+TGG - Chr8:61712486-61712505 None:intergenic 55.0%
!! TTCACCGGCGAAAGCATCAG+CGG - Chr8:61710884-61710903 None:intergenic 55.0%
AACCCTACCAGCACCCGATC+CGG - Chr8:61710777-61710796 None:intergenic 60.0%
CGAAGCTGAGCTAGGGTTCC+AGG - Chr8:61710734-61710753 None:intergenic 60.0%
CTCTAGCCGAGAGCGATCTG+GGG - Chr8:61712309-61712328 None:intergenic 60.0%
GCCGACCCTCCACACCTAAT+TGG - Chr8:61712852-61712871 None:intergenic 60.0%
GGCCAATGCTCAGAAGGACG+AGG - Chr8:61712350-61712369 None:intergenic 60.0%
TTAGGTTCCGGATCGGGTGC+TGG + Chr8:61710767-61710786 MsG0880045608.01.T01:CDS 60.0%
! GGCCCATGACGAGGTGCTTT+AGG - Chr8:61712501-61712520 None:intergenic 60.0%
!! GGGGTGATGGGAAGGGACTA+AGG + Chr8:61712457-61712476 MsG0880045608.01.T01:intron 60.0%
!! TCCAGCAGGGGTGATGGGAA+GGG + Chr8:61712450-61712469 MsG0880045608.01.T01:intron 60.0%
!! TTCCAGCAGGGGTGATGGGA+AGG + Chr8:61712449-61712468 MsG0880045608.01.T01:intron 60.0%
!! TTCCGGATCGGGTGCTGGTA+GGG + Chr8:61710772-61710791 MsG0880045608.01.T01:CDS 60.0%
TCCCTTCCCATCACCCCTGC+TGG - Chr8:61712454-61712473 None:intergenic 65.0%
!! GTTCCGGATCGGGTGCTGGT+AGG + Chr8:61710771-61710790 MsG0880045608.01.T01:CDS 65.0%
GGAGGTCGAGGCCCATGACG+AGG - Chr8:61712510-61712529 None:intergenic 70.0%
TTGGGACGCCGAAGACCCCG+AGG + Chr8:61710927-61710946 MsG0880045608.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 61710429 61713001 61710429 ID=MsG0880045608.01;Name=MsG0880045608.01
Chr8 mRNA 61710429 61713001 61710429 ID=MsG0880045608.01.T01;Parent=MsG0880045608.01;Name=MsG0880045608.01.T01;_AED=0.32;_eAED=0.32;_QI=104|1|1|1|0.25|0.4|5|285|263
Chr8 exon 61710429 61710499 61710429 ID=MsG0880045608.01.T01:exon:23557;Parent=MsG0880045608.01.T01
Chr8 exon 61710623 61711003 61710623 ID=MsG0880045608.01.T01:exon:23558;Parent=MsG0880045608.01.T01
Chr8 five_prime_UTR 61710429 61710499 61710429 ID=MsG0880045608.01.T01:five_prime_utr;Parent=MsG0880045608.01.T01
Chr8 five_prime_UTR 61710623 61710655 61710623 ID=MsG0880045608.01.T01:five_prime_utr;Parent=MsG0880045608.01.T01
Chr8 CDS 61710656 61711003 61710656 ID=MsG0880045608.01.T01:cds;Parent=MsG0880045608.01.T01
Chr8 CDS 61712089 61712163 61712089 ID=MsG0880045608.01.T01:cds;Parent=MsG0880045608.01.T01
Chr8 CDS 61712269 61712378 61712269 ID=MsG0880045608.01.T01:cds;Parent=MsG0880045608.01.T01
Chr8 CDS 61712458 61712716 61712458 ID=MsG0880045608.01.T01:cds;Parent=MsG0880045608.01.T01
Chr8 three_prime_UTR 61712717 61713001 61712717 ID=MsG0880045608.01.T01:three_prime_utr;Parent=MsG0880045608.01.T01
Chr8 mRNA 61710502 61713001 61710502 ID=MsG0880045608.01.T02;Parent=MsG0880045608.01;Name=MsG0880045608.01.T02;_AED=0.31;_eAED=0.31;_QI=154|1|1|1|0.33|0.75|4|285|263
Chr8 exon 61710502 61711003 61710502 ID=MsG0880045608.01.T02:exon:23562;Parent=MsG0880045608.01.T02
Chr8 five_prime_UTR 61710502 61710655 61710502 ID=MsG0880045608.01.T02:five_prime_utr;Parent=MsG0880045608.01.T02
Chr8 CDS 61710656 61711003 61710656 ID=MsG0880045608.01.T02:cds;Parent=MsG0880045608.01.T02
Chr8 CDS 61712089 61712163 61712089 ID=MsG0880045608.01.T02:cds;Parent=MsG0880045608.01.T02
Chr8 CDS 61712269 61712378 61712269 ID=MsG0880045608.01.T02:cds;Parent=MsG0880045608.01.T02
Chr8 CDS 61712458 61712716 61712458 ID=MsG0880045608.01.T02:cds;Parent=MsG0880045608.01.T02
Chr8 three_prime_UTR 61712717 61713001 61712717 ID=MsG0880045608.01.T02:three_prime_utr;Parent=MsG0880045608.01.T02
Gene Sequence

>MsG0880045608.01.T02

ATGGGGAAAGTGACGACGACGGAGAAAAGAAAAGGGAGGAGAAAATCGAAGAAATCTGGTACCAAGTATTTGAAACCTGGAACCCTAGCTCAGCTTCGGTGTAGCAAGTATTTAGGTTCCGGATCGGGTGCTGGTAGGGTTTGTAATGATATTGGGAAGAAAAGAGTTGAGCTTTTGAATTTGGAGAAGAATGAGGGTCATGAAGGTAAGGTGTTTGATAAAAGTCCGCTGATGCTTTCGCCGGTGAATTTGGTTAAACAGAGTAGTTCTGTTGGGACGCCGAAGACCCCGAGGATTGATGAGTGTCAATCGGAATCTAGGCTCGAGTCTCTTCCCATTGATTTATTGGTTAAAATATTATGCTGCCTGCACCATGATCAATTGAGAGCTGTTTTCCATGTTTCTCAAAGAATTAGAAAAGCAGTTATTGTGGCAAGGCAGTTTCACTTCAATTATACTACCCCAGATCGCTCTCGGCTAGAGATGTTAAGTACAATGACTCCTCGTCCTTCTGAGCATTGGCCTTTTCTGTGGGGTGATGGGAAGGGACTAAGGATTCCAAGCCCGCATACACCTAAAGCACCTCGTCATGGGCCTCGACCTCCTTCTCGCCTTAAAGTTTCTGAGATGCGACAGGTTACAGCTGTTCTTTTCAAGGAATCGGCTTTCGCTTCTCGTTGCATGGTACCATCAGTTATACCAAAGCCCCAGTGCAAATCAGTGGCTTCTAACAGAGTTCTCTTCTGTGAAGATGAACTATGCAAGGCAGTTGCTCAGAATAAACTTCTCTGA

>MsG0880045608.01.T01

ATGGGGAAAGTGACGACGACGGAGAAAAGAAAAGGGAGGAGAAAATCGAAGAAATCTGGTACCAAGTATTTGAAACCTGGAACCCTAGCTCAGCTTCGGTGTAGCAAGTATTTAGGTTCCGGATCGGGTGCTGGTAGGGTTTGTAATGATATTGGGAAGAAAAGAGTTGAGCTTTTGAATTTGGAGAAGAATGAGGGTCATGAAGGTAAGGTGTTTGATAAAAGTCCGCTGATGCTTTCGCCGGTGAATTTGGTTAAACAGAGTAGTTCTGTTGGGACGCCGAAGACCCCGAGGATTGATGAGTGTCAATCGGAATCTAGGCTCGAGTCTCTTCCCATTGATTTATTGGTTAAAATATTATGCTGCCTGCACCATGATCAATTGAGAGCTGTTTTCCATGTTTCTCAAAGAATTAGAAAAGCAGTTATTGTGGCAAGGCAGTTTCACTTCAATTATACTACCCCAGATCGCTCTCGGCTAGAGATGTTAAGTACAATGACTCCTCGTCCTTCTGAGCATTGGCCTTTTCTGTGGGGTGATGGGAAGGGACTAAGGATTCCAAGCCCGCATACACCTAAAGCACCTCGTCATGGGCCTCGACCTCCTTCTCGCCTTAAAGTTTCTGAGATGCGACAGGTTACAGCTGTTCTTTTCAAGGAATCGGCTTTCGCTTCTCGTTGCATGGTACCATCAGTTATACCAAAGCCCCAGTGCAAATCAGTGGCTTCTAACAGAGTTCTCTTCTGTGAAGATGAACTATGCAAGGCAGTTGCTCAGAATAAACTTCTCTGA
Protein sequence

>MsG0880045608.01.T02

MGKVTTTEKRKGRRKSKKSGTKYLKPGTLAQLRCSKYLGSGSGAGRVCNDIGKKRVELLNLEKNEGHEGKVFDKSPLMLSPVNLVKQSSSVGTPKTPRIDECQSESRLESLPIDLLVKILCCLHHDQLRAVFHVSQRIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRPSEHWPFLWGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKSVASNRVLFCEDELCKAVAQNKLL*

>MsG0880045608.01.T01

MGKVTTTEKRKGRRKSKKSGTKYLKPGTLAQLRCSKYLGSGSGAGRVCNDIGKKRVELLNLEKNEGHEGKVFDKSPLMLSPVNLVKQSSSVGTPKTPRIDECQSESRLESLPIDLLVKILCCLHHDQLRAVFHVSQRIRKAVIVARQFHFNYTTPDRSRLEMLSTMTPRPSEHWPFLWGDGKGLRIPSPHTPKAPRHGPRPPSRLKVSEMRQVTAVLFKESAFASRCMVPSVIPKPQCKSVASNRVLFCEDELCKAVAQNKLL*