Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006942.01.T01 | XP_003593782.1 | 100 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006942.01.T01 | Q8L940 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006942.01.T01 | Q45FF2 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002426.01 | MsG0280006942.01 | 0.807317 | 5.361695e-50 | 2.977107e-47 |
| MsG0180003324.01 | MsG0280006942.01 | 0.832114 | 1.136741e-55 | 1.258346e-52 |
| MsG0180004761.01 | MsG0280006942.01 | 0.815471 | 9.091122e-52 | 6.273971e-49 |
| MsG0180005856.01 | MsG0280006942.01 | 0.826386 | 2.790692e-54 | 2.613435e-51 |
| MsG0280006475.01 | MsG0280006942.01 | 0.801568 | 8.470083e-49 | 4.058168e-46 |
| MsG0280006942.01 | MsG0280010695.01 | 0.837616 | 4.680250e-57 | 6.113273e-54 |
| MsG0280006942.01 | MsG0380013957.01 | 0.802865 | 4.581191e-49 | 2.268626e-46 |
| MsG0280006942.01 | MsG0380013967.01 | 0.802535 | 5.358238e-49 | 2.631165e-46 |
| MsG0280006942.01 | MsG0380013977.01 | 0.803424 | 3.509413e-49 | 1.762931e-46 |
| MsG0280006942.01 | MsG0380013999.01 | 0.803364 | 3.612064e-49 | 1.811580e-46 |
| MsG0280006942.01 | MsG0380014017.01 | 0.817798 | 2.736070e-52 | 2.012361e-49 |
| MsG0280006942.01 | MsG0380017135.01 | 0.825174 | 5.413860e-54 | 4.897957e-51 |
| MsG0280006942.01 | MsG0380017804.01 | 0.809898 | 1.507268e-50 | 8.957732e-48 |
| MsG0280006942.01 | MsG0380017871.01 | 0.828122 | 1.071529e-54 | 1.055320e-51 |
| MsG0280006942.01 | MsG0480019668.01 | 0.813530 | 2.443285e-51 | 1.599608e-48 |
| MsG0280006942.01 | MsG0480019975.01 | 0.815343 | 9.703159e-52 | 6.672548e-49 |
| MsG0280006942.01 | MsG0480021476.01 | 0.831977 | 1.229102e-55 | 1.355355e-52 |
| MsG0280006942.01 | MsG0480022425.01 | 0.855545 | 5.870239e-62 | 1.360039e-58 |
| MsG0280006942.01 | MsG0480022447.01 | 0.847000 | 1.525020e-59 | 2.672595e-56 |
| MsG0280006942.01 | MsG0480023074.01 | 0.813609 | 2.347034e-51 | 1.539879e-48 |
| MsG0280006942.01 | MsG0480023480.01 | 0.800939 | 1.139099e-48 | 5.371942e-46 |
| MsG0280006942.01 | MsG0580024656.01 | 0.999365 | 4.061780e-306 | 2.301092e-298 |
| MsG0280006942.01 | MsG0780041637.01 | 0.809297 | 2.028850e-50 | 1.186732e-47 |
| MsG0280006942.01 | MsG0880045608.01 | -0.809871 | 1.527332e-50 | 9.070877e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006942.01.T01 | MTR_2g017520 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| MsG0280006942.01.T01 | MTR_4g012860 | 57.616 | 302 | 105 | 4 | 1 | 301 | 1 | 280 | 1.69e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006942.01.T01 | AT5G01410 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| MsG0280006942.01.T01 | AT5G01410 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| MsG0280006942.01.T01 | AT2G38230 | 86.943 | 314 | 36 | 2 | 1 | 314 | 1 | 309 | 0.0 | 554 |
| MsG0280006942.01.T01 | AT3G16050 | 62.939 | 313 | 107 | 3 | 2 | 313 | 9 | 313 | 3.64e-144 | 409 |
| MsG0280006942.01.T01 | AT2G38210 | 84.146 | 82 | 9 | 1 | 1 | 82 | 1 | 78 | 7.35e-39 | 132 |
Find 94 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGATCCTGAGATTT+TGG | 0.180703 | 2:+8331235 | MsG0280006942.01.T01:CDS |
| CGCTTGCGCCGTCATGGCCT+TGG | 0.264353 | 2:+8330578 | MsG0280006942.01.T01:CDS |
| TCGTCATGTGCGTTCTGTTT+TGG | 0.284365 | 2:+8330947 | MsG0280006942.01.T01:CDS |
| GACGGAGAATGGGGAGGATT+TGG | 0.292034 | 2:-8330469 | None:intergenic |
| CCAGCAGCAAACTGCACAAC+AGG | 0.295714 | 2:-8331080 | None:intergenic |
| GGAGGATTTGGTGGTGGTGG+AGG | 0.317871 | 2:-8330457 | None:intergenic |
| TTCCGTATTCCTTTCGTTTG+TGG | 0.325330 | 2:+8330825 | MsG0280006942.01.T01:CDS |
| CCTGTTGTGCAGTTTGCTGC+TGG | 0.331604 | 2:+8331080 | MsG0280006942.01.T01:CDS |
| TGGGGAGGATTTGGTGGTGG+TGG | 0.346825 | 2:-8330460 | None:intergenic |
| GGTGGTGGTGGAGGTTGTTT+CGG | 0.349577 | 2:-8330448 | None:intergenic |
| ATGTTGAGAGGTTTGCTAAT+AGG | 0.372798 | 2:+8331315 | MsG0280006942.01.T01:CDS |
| CCTTGAGCGCGGATGTCGGC+GGG | 0.383754 | 2:-8330609 | None:intergenic |
| AGGCCGACTTTGACGGAGAA+TGG | 0.394093 | 2:-8330480 | None:intergenic |
| GGCCGACTTTGACGGAGAAT+GGG | 0.401997 | 2:-8330479 | None:intergenic |
| GGCTGAGGTTAGTTGTGGAT+TGG | 0.407923 | 2:+8331256 | MsG0280006942.01.T01:CDS |
| GGCCATGACGGCGCAAGCGC+CGG | 0.420801 | 2:-8330574 | None:intergenic |
| TTCAGCGATACGAGCTTGTT+CGG | 0.421940 | 2:-8330547 | None:intergenic |
| TCCAGTACCAGCTTCACCTT+TGG | 0.422451 | 2:-8330907 | None:intergenic |
| TTCACCTTTGGTACGAATCA+TGG | 0.424363 | 2:-8330895 | None:intergenic |
| TTGATTTCTTTGATGAGTTG+AGG | 0.426615 | 2:-8330654 | None:intergenic |
| TGGCAGCACCTTCGCGAATA+CGG | 0.443839 | 2:-8330875 | None:intergenic |
| AGCCACAAACGAAAGGAATA+CGG | 0.446627 | 2:-8330827 | None:intergenic |
| TGATTTCTTTGATGAGTTGA+GGG | 0.448026 | 2:-8330653 | None:intergenic |
| GCTGAGGTTAGTTGTGGATT+GGG | 0.457039 | 2:+8331257 | MsG0280006942.01.T01:CDS |
| AATCGATTCCGAGAGATTCA+AGG | 0.462482 | 2:-8330740 | None:intergenic |
| TGTGGCGACACCGGCGGATG+CGG | 0.465593 | 2:+8331106 | MsG0280006942.01.T01:CDS |
| ACCAAAGGTGAAGCTGGTAC+TGG | 0.471439 | 2:+8330906 | MsG0280006942.01.T01:CDS |
| GTCTGCATAACAAGATCATA+AGG | 0.475122 | 2:-8331038 | None:intergenic |
| GAATGGGGAGGATTTGGTGG+TGG | 0.483771 | 2:-8330463 | None:intergenic |
| ATCATCAACGCCGCATCCGC+CGG | 0.489068 | 2:-8331116 | None:intergenic |
| GAAATGACCGATACGAGCTT+TGG | 0.495581 | 2:-8330703 | None:intergenic |
| ATACGAGCTTTGGCCATGAC+AGG | 0.496509 | 2:-8330693 | None:intergenic |
| TCCGGAGTCGTAACCGTCTA+CGG | 0.497613 | 2:+8330411 | MsG0280006942.01.T01:CDS |
| GCCTTGAGCGCGGATGTCGG+CGG | 0.499487 | 2:-8330610 | None:intergenic |
| GGAGAATGGGGAGGATTTGG+TGG | 0.500498 | 2:-8330466 | None:intergenic |
| TGTGTTTAAGAGTGGGGATC+CGG | 0.500830 | 2:+8331175 | MsG0280006942.01.T01:CDS |
| ATGATGCAGCTTGGTTGTGA+TGG | 0.500907 | 2:+8331134 | MsG0280006942.01.T01:CDS |
| CCCGCCGACATCCGCGCTCA+AGG | 0.502035 | 2:+8330609 | MsG0280006942.01.T01:CDS |
| GCTCCGCGGCGGTGTCATCA+TGG | 0.504945 | 2:+8330512 | MsG0280006942.01.T01:CDS |
| TTGAGCGAGGCCGACTTTGA+CGG | 0.505616 | 2:-8330487 | None:intergenic |
| GGTTCTGGTGTGTTTAAGAG+TGG | 0.505931 | 2:+8331167 | MsG0280006942.01.T01:CDS |
| AGCCGGCGCTTGCGCCGTCA+TGG | 0.506739 | 2:+8330572 | MsG0280006942.01.T01:CDS |
| GGATTGGGCGAAGCTATGGT+TGG | 0.507893 | 2:+8331272 | MsG0280006942.01.T01:CDS |
| TTCTTTGATGAGTTGAGGGT+CGG | 0.509203 | 2:-8330649 | None:intergenic |
| TTGTGGATTGGGCGAAGCTA+TGG | 0.514120 | 2:+8331268 | MsG0280006942.01.T01:CDS |
| CCCCTCACCATGGAAGGATC+CGG | 0.514984 | 2:+8330393 | None:intergenic |
| GTTGTGCAGTTTGCTGCTGG+TGG | 0.515305 | 2:+8331083 | MsG0280006942.01.T01:CDS |
| GTTCTGGTGTGTTTAAGAGT+GGG | 0.517289 | 2:+8331168 | MsG0280006942.01.T01:CDS |
| GCCGCCTTGAGCGCGGATGT+CGG | 0.518062 | 2:-8330613 | None:intergenic |
| TGTGATTGTCTTCATCAGCT+AGG | 0.518201 | 2:-8330788 | None:intergenic |
| GCTCGTATCGCTGAAGAAGC+CGG | 0.522227 | 2:+8330555 | MsG0280006942.01.T01:CDS |
| CTAACCTCAGCCAAAATCTC+AGG | 0.523396 | 2:-8331245 | None:intergenic |
| CGCCGTCACCATCCCTGTCA+TGG | 0.523650 | 2:+8330680 | MsG0280006942.01.T01:CDS |
| GAGGAACATGGATGAAGATG+AGG | 0.527866 | 2:+8330986 | MsG0280006942.01.T01:CDS |
| TGCTGGTGGTGTGGCGACAC+CGG | 0.534597 | 2:+8331097 | MsG0280006942.01.T01:CDS |
| ATTCGTACCAAAGGTGAAGC+TGG | 0.543654 | 2:+8330900 | MsG0280006942.01.T01:CDS |
| GATTGGGCGAAGCTATGGTT+GGG | 0.544098 | 2:+8331273 | MsG0280006942.01.T01:CDS |
| GGCCATGACAGGGATGGTGA+CGG | 0.547780 | 2:-8330682 | None:intergenic |
| GCCGTAGACGGTTACGACTC+CGG | 0.552703 | 2:-8330412 | None:intergenic |
| GCTCAGATCCTTGAATCTCT+CGG | 0.554374 | 2:+8330732 | MsG0280006942.01.T01:CDS |
| GTGATTGTCTTCATCAGCTA+GGG | 0.560345 | 2:-8330787 | None:intergenic |
| GTCGTAACCGTCTACGGCAA+CGG | 0.561391 | 2:+8330417 | MsG0280006942.01.T01:CDS |
| GTTTGTGGCTGTCGTAACCT+CGG | 0.564694 | 2:+8330840 | MsG0280006942.01.T01:CDS |
| GTTATGCAGACTAAGCAACT+TGG | 0.570305 | 2:+8331050 | MsG0280006942.01.T01:CDS |
| GAGTGCACCGTTGCCGTAGA+CGG | 0.571653 | 2:-8330424 | None:intergenic |
| TTCTGGTGTGTTTAAGAGTG+GGG | 0.572350 | 2:+8331169 | MsG0280006942.01.T01:CDS |
| TACGACTCCGGATCCTTCCA+TGG | 0.572782 | 2:-8330400 | None:intergenic |
| GCGGCGTTGATGATGCAGCT+TGG | 0.576055 | 2:+8331125 | MsG0280006942.01.T01:CDS |
| GAGCAACGCCGCCTTGAGCG+CGG | 0.578549 | 2:-8330620 | None:intergenic |
| GACACGCTCCAAGGCCATGA+CGG | 0.586431 | 2:-8330586 | None:intergenic |
| GTCATGGCCAAAGCTCGTAT+CGG | 0.604175 | 2:+8330696 | MsG0280006942.01.T01:CDS |
| CTCGCTCAAATGCTCCGCGG+CGG | 0.607268 | 2:+8330501 | MsG0280006942.01.T01:CDS |
| TGACTGATCATAATGTTGAG+AGG | 0.607276 | 2:+8331303 | MsG0280006942.01.T01:CDS |
| GCCGACTTTGACGGAGAATG+GGG | 0.610613 | 2:-8330478 | None:intergenic |
| GGGATCCGGCGAAAAGAGCG+AGG | 0.611909 | 2:+8331189 | MsG0280006942.01.T01:CDS |
| GCAGTTTGCTGCTGGTGGTG+TGG | 0.612599 | 2:+8331088 | MsG0280006942.01.T01:CDS |
| GACTTTGACGGAGAATGGGG+AGG | 0.614803 | 2:-8330475 | None:intergenic |
| TACGAGCTTTGGCCATGACA+GGG | 0.619481 | 2:-8330692 | None:intergenic |
| AGCTTTGGCCATGACAGGGA+TGG | 0.623887 | 2:-8330688 | None:intergenic |
| TCCCCATTCTCCGTCAAAGT+CGG | 0.626781 | 2:+8330477 | MsG0280006942.01.T01:CDS |
| GTCGGCGGGGACACGCTCCA+AGG | 0.628734 | 2:-8330595 | None:intergenic |
| GCTCTTCGCCGTATTCGCGA+AGG | 0.629697 | 2:+8330867 | MsG0280006942.01.T01:CDS |
| GCCGACATCCGCGCTCAAGG+CGG | 0.633654 | 2:+8330612 | MsG0280006942.01.T01:CDS |
| TTACGACAGCCACAAACGAA+AGG | 0.637367 | 2:-8330834 | None:intergenic |
| GCTGCCATGATTCGTACCAA+AGG | 0.643185 | 2:+8330891 | MsG0280006942.01.T01:CDS |
| CGCCGCGGAGCATTTGAGCG+AGG | 0.643339 | 2:-8330500 | None:intergenic |
| TGCAGACTAAGCAACTTGGA+AGG | 0.649819 | 2:+8331054 | MsG0280006942.01.T01:CDS |
| CATGACAGGGATGGTGACGG+CGG | 0.652699 | 2:-8330679 | None:intergenic |
| TGGTGGTGTGGCGACACCGG+CGG | 0.656866 | 2:+8331100 | MsG0280006942.01.T01:CDS |
| CTTGAGCGCGGATGTCGGCG+GGG | 0.673216 | 2:-8330608 | None:intergenic |
| GGATCCGGCGAAAAGAGCGA+GGG | 0.694405 | 2:+8331190 | MsG0280006942.01.T01:CDS |
| GGCCTCGCTCAAATGCTCCG+CGG | 0.749927 | 2:+8330498 | MsG0280006942.01.T01:CDS |
| CGTCCATGATGACACCGCCG+CGG | 0.762873 | 2:-8330515 | None:intergenic |
| TACGGCGAAGAGCTTCACCG+AGG | 0.777929 | 2:-8330857 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTTTTGCTAAGAAAAT+TGG | + | Chr2:8331011-8331030 | MsG0280006942.01.T01:CDS | 20.0% |
| TTGATTTCTTTGATGAGTTG+AGG | - | Chr2:8330657-8330676 | None:intergenic | 30.0% | |
| ! | TGATTTCTTTGATGAGTTGA+GGG | - | Chr2:8330656-8330675 | None:intergenic | 30.0% |
| !! | TTCTGTTTTGGGTGATATTA+GGG | + | Chr2:8330959-8330978 | MsG0280006942.01.T01:CDS | 30.0% |
| GTCTGCATAACAAGATCATA+AGG | - | Chr2:8331041-8331060 | None:intergenic | 35.0% | |
| TGACTGATCATAATGTTGAG+AGG | + | Chr2:8331303-8331322 | MsG0280006942.01.T01:CDS | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | + | Chr2:8331235-8331254 | MsG0280006942.01.T01:CDS | 35.0% |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | + | Chr2:8331315-8331334 | MsG0280006942.01.T01:CDS | 35.0% |
| !! | GTTCTGTTTTGGGTGATATT+AGG | + | Chr2:8330958-8330977 | MsG0280006942.01.T01:CDS | 35.0% |
| !!! | TATTAGGGTTTTGAGGAACA+TGG | + | Chr2:8330974-8330993 | MsG0280006942.01.T01:CDS | 35.0% |
| AGCCACAAACGAAAGGAATA+CGG | - | Chr2:8330830-8330849 | None:intergenic | 40.0% | |
| GTGATTGTCTTCATCAGCTA+GGG | - | Chr2:8330790-8330809 | None:intergenic | 40.0% | |
| GTTATGCAGACTAAGCAACT+TGG | + | Chr2:8331050-8331069 | MsG0280006942.01.T01:CDS | 40.0% | |
| GTTCTGGTGTGTTTAAGAGT+GGG | + | Chr2:8331168-8331187 | MsG0280006942.01.T01:CDS | 40.0% | |
| TGTGATTGTCTTCATCAGCT+AGG | - | Chr2:8330791-8330810 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | - | Chr2:8330898-8330917 | None:intergenic | 40.0% | |
| TTCCGTATTCCTTTCGTTTG+TGG | + | Chr2:8330825-8330844 | MsG0280006942.01.T01:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | + | Chr2:8331169-8331188 | MsG0280006942.01.T01:CDS | 40.0% | |
| ! | AATCGATTCCGAGAGATTCA+AGG | - | Chr2:8330743-8330762 | None:intergenic | 40.0% |
| ! | TGGGTGATATTAGGGTTTTG+AGG | + | Chr2:8330967-8330986 | MsG0280006942.01.T01:CDS | 40.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | - | Chr2:8330652-8330671 | None:intergenic | 40.0% |
| !! | GGTTGTGATGGTGTTTTTGT+TGG | + | Chr2:8331146-8331165 | MsG0280006942.01.T01:CDS | 40.0% |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | + | Chr2:8331251-8331270 | MsG0280006942.01.T01:CDS | 40.0% |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | + | Chr2:8331152-8331171 | MsG0280006942.01.T01:CDS | 40.0% |
| ATGATGCAGCTTGGTTGTGA+TGG | + | Chr2:8331134-8331153 | MsG0280006942.01.T01:CDS | 45.0% | |
| ATTCGTACCAAAGGTGAAGC+TGG | + | Chr2:8330900-8330919 | MsG0280006942.01.T01:CDS | 45.0% | |
| CTAACCTCAGCCAAAATCTC+AGG | - | Chr2:8331248-8331267 | None:intergenic | 45.0% | |
| GAAATGACCGATACGAGCTT+TGG | - | Chr2:8330706-8330725 | None:intergenic | 45.0% | |
| GAGGAACATGGATGAAGATG+AGG | + | Chr2:8330986-8331005 | MsG0280006942.01.T01:CDS | 45.0% | |
| GCTCAGATCCTTGAATCTCT+CGG | + | Chr2:8330732-8330751 | MsG0280006942.01.T01:CDS | 45.0% | |
| TGCAGACTAAGCAACTTGGA+AGG | + | Chr2:8331054-8331073 | MsG0280006942.01.T01:CDS | 45.0% | |
| TGTGTTTAAGAGTGGGGATC+CGG | + | Chr2:8331175-8331194 | MsG0280006942.01.T01:CDS | 45.0% | |
| TTACGACAGCCACAAACGAA+AGG | - | Chr2:8330837-8330856 | None:intergenic | 45.0% | |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | + | Chr2:8330948-8330967 | MsG0280006942.01.T01:CDS | 45.0% |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | + | Chr2:8331257-8331276 | MsG0280006942.01.T01:CDS | 45.0% |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | + | Chr2:8331167-8331186 | MsG0280006942.01.T01:CDS | 45.0% |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | + | Chr2:8330947-8330966 | MsG0280006942.01.T01:CDS | 45.0% |
| ! | TTCAGCGATACGAGCTTGTT+CGG | - | Chr2:8330550-8330569 | None:intergenic | 45.0% |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | + | Chr2:8331241-8331260 | MsG0280006942.01.T01:CDS | 45.0% |
| ACCAAAGGTGAAGCTGGTAC+TGG | + | Chr2:8330906-8330925 | MsG0280006942.01.T01:CDS | 50.0% | |
| GATTGGGCGAAGCTATGGTT+GGG | + | Chr2:8331273-8331292 | MsG0280006942.01.T01:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | + | Chr2:8330891-8330910 | MsG0280006942.01.T01:CDS | 50.0% | |
| GTCATGGCCAAAGCTCGTAT+CGG | + | Chr2:8330696-8330715 | MsG0280006942.01.T01:CDS | 50.0% | |
| GTTTGTGGCTGTCGTAACCT+CGG | + | Chr2:8330840-8330859 | MsG0280006942.01.T01:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | - | Chr2:8330910-8330929 | None:intergenic | 50.0% | |
| TCCCCATTCTCCGTCAAAGT+CGG | + | Chr2:8330477-8330496 | MsG0280006942.01.T01:CDS | 50.0% | |
| ! | ATACGAGCTTTGGCCATGAC+AGG | - | Chr2:8330696-8330715 | None:intergenic | 50.0% |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | + | Chr2:8331256-8331275 | MsG0280006942.01.T01:CDS | 50.0% |
| ! | TACGAGCTTTGGCCATGACA+GGG | - | Chr2:8330695-8330714 | None:intergenic | 50.0% |
| !! | TTGTGGATTGGGCGAAGCTA+TGG | + | Chr2:8331268-8331287 | MsG0280006942.01.T01:CDS | 50.0% |
| CCAGCAGCAAACTGCACAAC+AGG | - | Chr2:8331083-8331102 | None:intergenic | 55.0% | |
| GACGGAGAATGGGGAGGATT+TGG | - | Chr2:8330472-8330491 | None:intergenic | 55.0% | |
| GACTTTGACGGAGAATGGGG+AGG | - | Chr2:8330478-8330497 | None:intergenic | 55.0% | |
| GCTCGTATCGCTGAAGAAGC+CGG | + | Chr2:8330555-8330574 | MsG0280006942.01.T01:CDS | 55.0% | |
| GGAGAATGGGGAGGATTTGG+TGG | - | Chr2:8330469-8330488 | None:intergenic | 55.0% | |
| GGATTGGGCGAAGCTATGGT+TGG | + | Chr2:8331272-8331291 | MsG0280006942.01.T01:CDS | 55.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | + | Chr2:8330417-8330436 | MsG0280006942.01.T01:CDS | 55.0% | |
| TCCGGAGTCGTAACCGTCTA+CGG | + | Chr2:8330411-8330430 | MsG0280006942.01.T01:CDS | 55.0% | |
| TGGCAGCACCTTCGCGAATA+CGG | - | Chr2:8330878-8330897 | None:intergenic | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | - | Chr2:8330691-8330710 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | - | Chr2:8330483-8330502 | None:intergenic | 55.0% |
| ! | GCCGACTTTGACGGAGAATG+GGG | - | Chr2:8330481-8330500 | None:intergenic | 55.0% |
| ! | GGCCGACTTTGACGGAGAAT+GGG | - | Chr2:8330482-8330501 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | - | Chr2:8330490-8330509 | None:intergenic | 55.0% |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | + | Chr2:8331080-8331099 | MsG0280006942.01.T01:CDS | 55.0% |
| !! | GAATGGGGAGGATTTGGTGG+TGG | - | Chr2:8330466-8330485 | None:intergenic | 55.0% |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | - | Chr2:8330451-8330470 | None:intergenic | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | + | Chr2:8331083-8331102 | MsG0280006942.01.T01:CDS | 55.0% |
| ATCATCAACGCCGCATCCGC+CGG | - | Chr2:8331119-8331138 | None:intergenic | 60.0% | |
| GACACGCTCCAAGGCCATGA+CGG | - | Chr2:8330589-8330608 | None:intergenic | 60.0% | |
| GAGTGCACCGTTGCCGTAGA+CGG | - | Chr2:8330427-8330446 | None:intergenic | 60.0% | |
| GCCGTAGACGGTTACGACTC+CGG | - | Chr2:8330415-8330434 | None:intergenic | 60.0% | |
| GCTCTTCGCCGTATTCGCGA+AGG | + | Chr2:8330867-8330886 | MsG0280006942.01.T01:CDS | 60.0% | |
| GGATCCGGCGAAAAGAGCGA+GGG | + | Chr2:8331190-8331209 | MsG0280006942.01.T01:CDS | 60.0% | |
| GGCCATGACAGGGATGGTGA+CGG | - | Chr2:8330685-8330704 | None:intergenic | 60.0% | |
| TACGGCGAAGAGCTTCACCG+AGG | - | Chr2:8330860-8330879 | None:intergenic | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | - | Chr2:8331197-8331216 | None:intergenic | 60.0% |
| !! | CATGACAGGGATGGTGACGG+CGG | - | Chr2:8330682-8330701 | None:intergenic | 60.0% |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | + | Chr2:8331088-8331107 | MsG0280006942.01.T01:CDS | 60.0% |
| !! | GCGGCGTTGATGATGCAGCT+TGG | + | Chr2:8331125-8331144 | MsG0280006942.01.T01:CDS | 60.0% |
| !! | GGAGGATTTGGTGGTGGTGG+AGG | - | Chr2:8330460-8330479 | None:intergenic | 60.0% |
| !! | TGGGGAGGATTTGGTGGTGG+TGG | - | Chr2:8330463-8330482 | None:intergenic | 60.0% |
| CGCCGTCACCATCCCTGTCA+TGG | + | Chr2:8330680-8330699 | MsG0280006942.01.T01:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | - | Chr2:8330518-8330537 | None:intergenic | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | + | Chr2:8330501-8330520 | MsG0280006942.01.T01:CDS | 65.0% | |
| GGCCTCGCTCAAATGCTCCG+CGG | + | Chr2:8330498-8330517 | MsG0280006942.01.T01:CDS | 65.0% | |
| GGGATCCGGCGAAAAGAGCG+AGG | + | Chr2:8331189-8331208 | MsG0280006942.01.T01:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCGACAC+CGG | + | Chr2:8331097-8331116 | MsG0280006942.01.T01:CDS | 65.0% |
| CCTTGAGCGCGGATGTCGGC+GGG | - | Chr2:8330612-8330631 | None:intergenic | 70.0% | |
| CGCTTGCGCCGTCATGGCCT+TGG | + | Chr2:8330578-8330597 | MsG0280006942.01.T01:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | - | Chr2:8330611-8330630 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | - | Chr2:8330623-8330642 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | + | Chr2:8330612-8330631 | MsG0280006942.01.T01:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | - | Chr2:8330616-8330635 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | - | Chr2:8330613-8330632 | None:intergenic | 70.0% | |
| TGTGGCGACACCGGCGGATG+CGG | + | Chr2:8331106-8331125 | MsG0280006942.01.T01:CDS | 70.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | - | Chr2:8330503-8330522 | None:intergenic | 70.0% |
| ! | TGGTGGTGTGGCGACACCGG+CGG | + | Chr2:8331100-8331119 | MsG0280006942.01.T01:CDS | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | + | Chr2:8330512-8330531 | MsG0280006942.01.T01:CDS | 70.0% |
| AGCCGGCGCTTGCGCCGTCA+TGG | + | Chr2:8330572-8330591 | MsG0280006942.01.T01:CDS | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | + | Chr2:8330609-8330628 | MsG0280006942.01.T01:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | - | Chr2:8330577-8330596 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | - | Chr2:8330598-8330617 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 8330402 | 8331346 | 8330402 | ID=MsG0280006942.01;Name=MsG0280006942.01 |
| Chr2 | mRNA | 8330402 | 8331346 | 8330402 | ID=MsG0280006942.01.T01;Parent=MsG0280006942.01;Name=MsG0280006942.01.T01;_AED=0.44;_eAED=0.44;_QI=0|-1|0|1|-1|1|1|0|314 |
| Chr2 | exon | 8330402 | 8331346 | 8330402 | ID=MsG0280006942.01.T01:exon:4372;Parent=MsG0280006942.01.T01 |
| Chr2 | CDS | 8330402 | 8331346 | 8330402 | ID=MsG0280006942.01.T01:cds;Parent=MsG0280006942.01.T01 |
| Gene Sequence |
| Protein sequence |
