Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024656.01.T01 | XP_003593782.1 | 100 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0 | 638 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024656.01.T01 | Q8L940 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0 | 585 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024656.01.T01 | Q45FF2 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002426.01 | MsG0580024656.01 | 0.807259 | 5.515438e-50 | 3.057809e-47 |
| MsG0180003324.01 | MsG0580024656.01 | 0.834093 | 3.658013e-56 | 4.296216e-53 |
| MsG0180004761.01 | MsG0580024656.01 | 0.812052 | 5.145734e-51 | 3.237703e-48 |
| MsG0180005856.01 | MsG0580024656.01 | 0.829203 | 5.871742e-55 | 5.968924e-52 |
| MsG0280010695.01 | MsG0580024656.01 | 0.837579 | 4.782302e-57 | 6.239343e-54 |
| MsG0380013957.01 | MsG0580024656.01 | 0.803754 | 2.998070e-49 | 1.518885e-46 |
| MsG0380013967.01 | MsG0580024656.01 | 0.803641 | 3.164583e-49 | 1.598569e-46 |
| MsG0380013977.01 | MsG0580024656.01 | 0.804663 | 1.938660e-49 | 1.005407e-46 |
| MsG0380013999.01 | MsG0580024656.01 | 0.805995 | 1.019934e-49 | 5.473960e-47 |
| MsG0380014017.01 | MsG0580024656.01 | 0.820539 | 6.503474e-53 | 5.160261e-50 |
| MsG0480019668.01 | MsG0580024656.01 | 0.813005 | 3.186378e-51 | 2.056486e-48 |
| MsG0480019975.01 | MsG0580024656.01 | 0.813083 | 3.063190e-51 | 1.981041e-48 |
| MsG0480021476.01 | MsG0580024656.01 | 0.831492 | 1.618732e-55 | 1.759430e-52 |
| MsG0480022425.01 | MsG0580024656.01 | 0.850482 | 1.650089e-60 | 3.236655e-57 |
| MsG0480022447.01 | MsG0580024656.01 | 0.841419 | 4.806054e-58 | 7.058179e-55 |
| MsG0480023074.01 | MsG0580024656.01 | 0.816272 | 6.024690e-52 | 4.249779e-49 |
| MsG0580024656.01 | MsG0780041637.01 | 0.808006 | 3.828558e-50 | 2.164291e-47 |
| MsG0580024656.01 | MsG0880045608.01 | -0.813226 | 2.849179e-51 | 1.849802e-48 |
| MsG0380017135.01 | MsG0580024656.01 | 0.821971 | 3.040363e-53 | 2.510939e-50 |
| MsG0380017804.01 | MsG0580024656.01 | 0.811186 | 7.940484e-51 | 4.882588e-48 |
| MsG0380017871.01 | MsG0580024656.01 | 0.828566 | 8.371139e-55 | 8.351870e-52 |
| MsG0280006942.01 | MsG0580024656.01 | 0.999365 | 4.061780e-306 | 2.301092e-298 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024656.01.T01 | MTR_2g017520 | 100.000 | 314 | 0 | 0 | 1 | 314 | 1 | 314 | 0.0 | 638 |
| MsG0580024656.01.T01 | MTR_4g012860 | 57.616 | 302 | 105 | 4 | 1 | 301 | 1 | 280 | 1.69e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024656.01.T01 | AT5G01410 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| MsG0580024656.01.T01 | AT5G01410 | 91.083 | 314 | 23 | 1 | 1 | 314 | 1 | 309 | 0.0 | 585 |
| MsG0580024656.01.T01 | AT2G38230 | 86.943 | 314 | 36 | 2 | 1 | 314 | 1 | 309 | 0.0 | 554 |
| MsG0580024656.01.T01 | AT3G16050 | 62.939 | 313 | 107 | 3 | 2 | 313 | 9 | 313 | 3.64e-144 | 409 |
| MsG0580024656.01.T01 | AT2G38210 | 84.146 | 82 | 9 | 1 | 1 | 82 | 1 | 78 | 7.35e-39 | 132 |
Find 94 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGATCCTGAGATTT+TGG | 0.180703 | 5:-7798104 | MsG0580024656.01.T01:CDS |
| CGCTTGCGCCGTCATGGCCT+TGG | 0.264353 | 5:-7798761 | MsG0580024656.01.T01:CDS |
| TCGTCATGTGCGTTCTGTTT+TGG | 0.284365 | 5:-7798392 | MsG0580024656.01.T01:CDS |
| GACGGAGAATGGGGAGGATT+TGG | 0.292034 | 5:+7798870 | None:intergenic |
| CCAGCAGCAAACTGCACAAC+AGG | 0.295714 | 5:+7798259 | None:intergenic |
| GGAGGATTTGGTGGTGGTGG+AGG | 0.317871 | 5:+7798882 | None:intergenic |
| TTCCGTATTCCTTTCGTTTG+TGG | 0.325330 | 5:-7798514 | MsG0580024656.01.T01:CDS |
| CCTGTTGTGCAGTTTGCTGC+TGG | 0.331604 | 5:-7798259 | MsG0580024656.01.T01:CDS |
| TGGGGAGGATTTGGTGGTGG+TGG | 0.346825 | 5:+7798879 | None:intergenic |
| GGTGGTGGTGGAGGTTGTTT+CGG | 0.349577 | 5:+7798891 | None:intergenic |
| ATGTTGAGAGGTTTGCTAAT+AGG | 0.372798 | 5:-7798024 | MsG0580024656.01.T01:CDS |
| CCTTGAGCGCGGATGTCGGC+GGG | 0.383754 | 5:+7798730 | None:intergenic |
| AGGCCGACTTTGACGGAGAA+TGG | 0.394093 | 5:+7798859 | None:intergenic |
| GGCCGACTTTGACGGAGAAT+GGG | 0.401997 | 5:+7798860 | None:intergenic |
| GGCTGAGGTTAGTTGTGGAT+TGG | 0.407923 | 5:-7798083 | MsG0580024656.01.T01:CDS |
| GGCCATGACGGCGCAAGCGC+CGG | 0.420801 | 5:+7798765 | None:intergenic |
| TTCAGCGATACGAGCTTGTT+CGG | 0.421940 | 5:+7798792 | None:intergenic |
| TCCAGTACCAGCTTCACCTT+TGG | 0.422451 | 5:+7798432 | None:intergenic |
| TTCACCTTTGGTACGAATCA+TGG | 0.424363 | 5:+7798444 | None:intergenic |
| TTGATTTCTTTGATGAGTTG+AGG | 0.426615 | 5:+7798685 | None:intergenic |
| TGGCAGCACCTTCGCGAATA+CGG | 0.443839 | 5:+7798464 | None:intergenic |
| AGCCACAAACGAAAGGAATA+CGG | 0.446627 | 5:+7798512 | None:intergenic |
| TGATTTCTTTGATGAGTTGA+GGG | 0.448026 | 5:+7798686 | None:intergenic |
| GCTGAGGTTAGTTGTGGATT+GGG | 0.457039 | 5:-7798082 | MsG0580024656.01.T01:CDS |
| AATCGATTCCGAGAGATTCA+AGG | 0.462482 | 5:+7798599 | None:intergenic |
| TGTGGCGACACCGGCGGATG+CGG | 0.465593 | 5:-7798233 | MsG0580024656.01.T01:CDS |
| ACCAAAGGTGAAGCTGGTAC+TGG | 0.471439 | 5:-7798433 | MsG0580024656.01.T01:CDS |
| GTCTGCATAACAAGATCATA+AGG | 0.475122 | 5:+7798301 | None:intergenic |
| GAATGGGGAGGATTTGGTGG+TGG | 0.483771 | 5:+7798876 | None:intergenic |
| ATCATCAACGCCGCATCCGC+CGG | 0.489068 | 5:+7798223 | None:intergenic |
| GAAATGACCGATACGAGCTT+TGG | 0.495581 | 5:+7798636 | None:intergenic |
| ATACGAGCTTTGGCCATGAC+AGG | 0.496509 | 5:+7798646 | None:intergenic |
| TCCGGAGTCGTAACCGTCTA+CGG | 0.497613 | 5:-7798928 | MsG0580024656.01.T01:CDS |
| GCCTTGAGCGCGGATGTCGG+CGG | 0.499487 | 5:+7798729 | None:intergenic |
| GGAGAATGGGGAGGATTTGG+TGG | 0.500498 | 5:+7798873 | None:intergenic |
| TGTGTTTAAGAGTGGGGATC+CGG | 0.500830 | 5:-7798164 | MsG0580024656.01.T01:CDS |
| ATGATGCAGCTTGGTTGTGA+TGG | 0.500907 | 5:-7798205 | MsG0580024656.01.T01:CDS |
| CCCGCCGACATCCGCGCTCA+AGG | 0.502035 | 5:-7798730 | MsG0580024656.01.T01:CDS |
| GCTCCGCGGCGGTGTCATCA+TGG | 0.504945 | 5:-7798827 | MsG0580024656.01.T01:CDS |
| TTGAGCGAGGCCGACTTTGA+CGG | 0.505616 | 5:+7798852 | None:intergenic |
| GGTTCTGGTGTGTTTAAGAG+TGG | 0.505931 | 5:-7798172 | MsG0580024656.01.T01:CDS |
| AGCCGGCGCTTGCGCCGTCA+TGG | 0.506739 | 5:-7798767 | MsG0580024656.01.T01:CDS |
| GGATTGGGCGAAGCTATGGT+TGG | 0.507893 | 5:-7798067 | MsG0580024656.01.T01:CDS |
| TTCTTTGATGAGTTGAGGGT+CGG | 0.509203 | 5:+7798690 | None:intergenic |
| TTGTGGATTGGGCGAAGCTA+TGG | 0.514120 | 5:-7798071 | MsG0580024656.01.T01:CDS |
| CCCCTCACCATGGAAGGATC+CGG | 0.514984 | 5:-7798946 | None:intergenic |
| GTTGTGCAGTTTGCTGCTGG+TGG | 0.515305 | 5:-7798256 | MsG0580024656.01.T01:CDS |
| GTTCTGGTGTGTTTAAGAGT+GGG | 0.517289 | 5:-7798171 | MsG0580024656.01.T01:CDS |
| GCCGCCTTGAGCGCGGATGT+CGG | 0.518062 | 5:+7798726 | None:intergenic |
| TGTGATTGTCTTCATCAGCT+AGG | 0.518201 | 5:+7798551 | None:intergenic |
| GCTCGTATCGCTGAAGAAGC+CGG | 0.522227 | 5:-7798784 | MsG0580024656.01.T01:CDS |
| CTAACCTCAGCCAAAATCTC+AGG | 0.523396 | 5:+7798094 | None:intergenic |
| CGCCGTCACCATCCCTGTCA+TGG | 0.523650 | 5:-7798659 | MsG0580024656.01.T01:CDS |
| GAGGAACATGGATGAAGATG+AGG | 0.527866 | 5:-7798353 | MsG0580024656.01.T01:CDS |
| TGCTGGTGGTGTGGCGACAC+CGG | 0.534597 | 5:-7798242 | MsG0580024656.01.T01:CDS |
| ATTCGTACCAAAGGTGAAGC+TGG | 0.543654 | 5:-7798439 | MsG0580024656.01.T01:CDS |
| GATTGGGCGAAGCTATGGTT+GGG | 0.544098 | 5:-7798066 | MsG0580024656.01.T01:CDS |
| GGCCATGACAGGGATGGTGA+CGG | 0.547780 | 5:+7798657 | None:intergenic |
| GCCGTAGACGGTTACGACTC+CGG | 0.552703 | 5:+7798927 | None:intergenic |
| GCTCAGATCCTTGAATCTCT+CGG | 0.554374 | 5:-7798607 | MsG0580024656.01.T01:CDS |
| GTGATTGTCTTCATCAGCTA+GGG | 0.560345 | 5:+7798552 | None:intergenic |
| GTCGTAACCGTCTACGGCAA+CGG | 0.561391 | 5:-7798922 | MsG0580024656.01.T01:CDS |
| GTTTGTGGCTGTCGTAACCT+CGG | 0.564694 | 5:-7798499 | MsG0580024656.01.T01:CDS |
| GTTATGCAGACTAAGCAACT+TGG | 0.570305 | 5:-7798289 | MsG0580024656.01.T01:CDS |
| GAGTGCACCGTTGCCGTAGA+CGG | 0.571653 | 5:+7798915 | None:intergenic |
| TTCTGGTGTGTTTAAGAGTG+GGG | 0.572350 | 5:-7798170 | MsG0580024656.01.T01:CDS |
| TACGACTCCGGATCCTTCCA+TGG | 0.572782 | 5:+7798939 | None:intergenic |
| GCGGCGTTGATGATGCAGCT+TGG | 0.576055 | 5:-7798214 | MsG0580024656.01.T01:CDS |
| GAGCAACGCCGCCTTGAGCG+CGG | 0.578549 | 5:+7798719 | None:intergenic |
| GACACGCTCCAAGGCCATGA+CGG | 0.586431 | 5:+7798753 | None:intergenic |
| GTCATGGCCAAAGCTCGTAT+CGG | 0.604175 | 5:-7798643 | MsG0580024656.01.T01:CDS |
| CTCGCTCAAATGCTCCGCGG+CGG | 0.607268 | 5:-7798838 | MsG0580024656.01.T01:CDS |
| TGACTGATCATAATGTTGAG+AGG | 0.607276 | 5:-7798036 | MsG0580024656.01.T01:CDS |
| GCCGACTTTGACGGAGAATG+GGG | 0.610613 | 5:+7798861 | None:intergenic |
| GGGATCCGGCGAAAAGAGCG+AGG | 0.611909 | 5:-7798150 | MsG0580024656.01.T01:CDS |
| GCAGTTTGCTGCTGGTGGTG+TGG | 0.612599 | 5:-7798251 | MsG0580024656.01.T01:CDS |
| GACTTTGACGGAGAATGGGG+AGG | 0.614803 | 5:+7798864 | None:intergenic |
| TACGAGCTTTGGCCATGACA+GGG | 0.619481 | 5:+7798647 | None:intergenic |
| AGCTTTGGCCATGACAGGGA+TGG | 0.623887 | 5:+7798651 | None:intergenic |
| TCCCCATTCTCCGTCAAAGT+CGG | 0.626781 | 5:-7798862 | MsG0580024656.01.T01:CDS |
| GTCGGCGGGGACACGCTCCA+AGG | 0.628734 | 5:+7798744 | None:intergenic |
| GCTCTTCGCCGTATTCGCGA+AGG | 0.629697 | 5:-7798472 | MsG0580024656.01.T01:CDS |
| GCCGACATCCGCGCTCAAGG+CGG | 0.633654 | 5:-7798727 | MsG0580024656.01.T01:CDS |
| TTACGACAGCCACAAACGAA+AGG | 0.637367 | 5:+7798505 | None:intergenic |
| GCTGCCATGATTCGTACCAA+AGG | 0.643185 | 5:-7798448 | MsG0580024656.01.T01:CDS |
| CGCCGCGGAGCATTTGAGCG+AGG | 0.643339 | 5:+7798839 | None:intergenic |
| TGCAGACTAAGCAACTTGGA+AGG | 0.649819 | 5:-7798285 | MsG0580024656.01.T01:CDS |
| CATGACAGGGATGGTGACGG+CGG | 0.652699 | 5:+7798660 | None:intergenic |
| TGGTGGTGTGGCGACACCGG+CGG | 0.656866 | 5:-7798239 | MsG0580024656.01.T01:CDS |
| CTTGAGCGCGGATGTCGGCG+GGG | 0.673216 | 5:+7798731 | None:intergenic |
| GGATCCGGCGAAAAGAGCGA+GGG | 0.694405 | 5:-7798149 | MsG0580024656.01.T01:CDS |
| GGCCTCGCTCAAATGCTCCG+CGG | 0.749927 | 5:-7798841 | MsG0580024656.01.T01:CDS |
| CGTCCATGATGACACCGCCG+CGG | 0.762873 | 5:+7798824 | None:intergenic |
| TACGGCGAAGAGCTTCACCG+AGG | 0.777929 | 5:+7798482 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACTTTTGCTAAGAAAAT+TGG | - | Chr5:7798624-7798643 | MsG0580024656.01.T01:CDS | 20.0% |
| TTGATTTCTTTGATGAGTTG+AGG | + | Chr5:7798270-7798289 | None:intergenic | 30.0% | |
| ! | TGATTTCTTTGATGAGTTGA+GGG | + | Chr5:7798269-7798288 | None:intergenic | 30.0% |
| !! | TTCTGTTTTGGGTGATATTA+GGG | - | Chr5:7798572-7798591 | MsG0580024656.01.T01:CDS | 30.0% |
| GTCTGCATAACAAGATCATA+AGG | + | Chr5:7798654-7798673 | None:intergenic | 35.0% | |
| TGACTGATCATAATGTTGAG+AGG | - | Chr5:7798916-7798935 | MsG0580024656.01.T01:CDS | 35.0% | |
| ! | TTACAGTGATCCTGAGATTT+TGG | - | Chr5:7798848-7798867 | MsG0580024656.01.T01:CDS | 35.0% |
| !! | ATGTTGAGAGGTTTGCTAAT+AGG | - | Chr5:7798928-7798947 | MsG0580024656.01.T01:CDS | 35.0% |
| !! | GTTCTGTTTTGGGTGATATT+AGG | - | Chr5:7798571-7798590 | MsG0580024656.01.T01:CDS | 35.0% |
| !!! | TATTAGGGTTTTGAGGAACA+TGG | - | Chr5:7798587-7798606 | MsG0580024656.01.T01:CDS | 35.0% |
| AGCCACAAACGAAAGGAATA+CGG | + | Chr5:7798443-7798462 | None:intergenic | 40.0% | |
| GTGATTGTCTTCATCAGCTA+GGG | + | Chr5:7798403-7798422 | None:intergenic | 40.0% | |
| GTTATGCAGACTAAGCAACT+TGG | - | Chr5:7798663-7798682 | MsG0580024656.01.T01:CDS | 40.0% | |
| GTTCTGGTGTGTTTAAGAGT+GGG | - | Chr5:7798781-7798800 | MsG0580024656.01.T01:CDS | 40.0% | |
| TGTGATTGTCTTCATCAGCT+AGG | + | Chr5:7798404-7798423 | None:intergenic | 40.0% | |
| TTCACCTTTGGTACGAATCA+TGG | + | Chr5:7798511-7798530 | None:intergenic | 40.0% | |
| TTCCGTATTCCTTTCGTTTG+TGG | - | Chr5:7798438-7798457 | MsG0580024656.01.T01:CDS | 40.0% | |
| TTCTGGTGTGTTTAAGAGTG+GGG | - | Chr5:7798782-7798801 | MsG0580024656.01.T01:CDS | 40.0% | |
| ! | AATCGATTCCGAGAGATTCA+AGG | + | Chr5:7798356-7798375 | None:intergenic | 40.0% |
| ! | TGGGTGATATTAGGGTTTTG+AGG | - | Chr5:7798580-7798599 | MsG0580024656.01.T01:CDS | 40.0% |
| ! | TTCTTTGATGAGTTGAGGGT+CGG | + | Chr5:7798265-7798284 | None:intergenic | 40.0% |
| !! | GGTTGTGATGGTGTTTTTGT+TGG | - | Chr5:7798759-7798778 | MsG0580024656.01.T01:CDS | 40.0% |
| !!! | ATTTTGGCTGAGGTTAGTTG+TGG | - | Chr5:7798864-7798883 | MsG0580024656.01.T01:CDS | 40.0% |
| !!! | GATGGTGTTTTTGTTGGTTC+TGG | - | Chr5:7798765-7798784 | MsG0580024656.01.T01:CDS | 40.0% |
| ATGATGCAGCTTGGTTGTGA+TGG | - | Chr5:7798747-7798766 | MsG0580024656.01.T01:CDS | 45.0% | |
| ATTCGTACCAAAGGTGAAGC+TGG | - | Chr5:7798513-7798532 | MsG0580024656.01.T01:CDS | 45.0% | |
| CTAACCTCAGCCAAAATCTC+AGG | + | Chr5:7798861-7798880 | None:intergenic | 45.0% | |
| GAAATGACCGATACGAGCTT+TGG | + | Chr5:7798319-7798338 | None:intergenic | 45.0% | |
| GAGGAACATGGATGAAGATG+AGG | - | Chr5:7798599-7798618 | MsG0580024656.01.T01:CDS | 45.0% | |
| GCTCAGATCCTTGAATCTCT+CGG | - | Chr5:7798345-7798364 | MsG0580024656.01.T01:CDS | 45.0% | |
| TGCAGACTAAGCAACTTGGA+AGG | - | Chr5:7798667-7798686 | MsG0580024656.01.T01:CDS | 45.0% | |
| TGTGTTTAAGAGTGGGGATC+CGG | - | Chr5:7798788-7798807 | MsG0580024656.01.T01:CDS | 45.0% | |
| TTACGACAGCCACAAACGAA+AGG | + | Chr5:7798450-7798469 | None:intergenic | 45.0% | |
| ! | CGTCATGTGCGTTCTGTTTT+GGG | - | Chr5:7798561-7798580 | MsG0580024656.01.T01:CDS | 45.0% |
| ! | GCTGAGGTTAGTTGTGGATT+GGG | - | Chr5:7798870-7798889 | MsG0580024656.01.T01:CDS | 45.0% |
| ! | GGTTCTGGTGTGTTTAAGAG+TGG | - | Chr5:7798780-7798799 | MsG0580024656.01.T01:CDS | 45.0% |
| ! | TCGTCATGTGCGTTCTGTTT+TGG | - | Chr5:7798560-7798579 | MsG0580024656.01.T01:CDS | 45.0% |
| ! | TTCAGCGATACGAGCTTGTT+CGG | + | Chr5:7798163-7798182 | None:intergenic | 45.0% |
| !!! | TGATCCTGAGATTTTGGCTG+AGG | - | Chr5:7798854-7798873 | MsG0580024656.01.T01:CDS | 45.0% |
| ACCAAAGGTGAAGCTGGTAC+TGG | - | Chr5:7798519-7798538 | MsG0580024656.01.T01:CDS | 50.0% | |
| GATTGGGCGAAGCTATGGTT+GGG | - | Chr5:7798886-7798905 | MsG0580024656.01.T01:CDS | 50.0% | |
| GCTGCCATGATTCGTACCAA+AGG | - | Chr5:7798504-7798523 | MsG0580024656.01.T01:CDS | 50.0% | |
| GTCATGGCCAAAGCTCGTAT+CGG | - | Chr5:7798309-7798328 | MsG0580024656.01.T01:CDS | 50.0% | |
| GTTTGTGGCTGTCGTAACCT+CGG | - | Chr5:7798453-7798472 | MsG0580024656.01.T01:CDS | 50.0% | |
| TCCAGTACCAGCTTCACCTT+TGG | + | Chr5:7798523-7798542 | None:intergenic | 50.0% | |
| TCCCCATTCTCCGTCAAAGT+CGG | - | Chr5:7798090-7798109 | MsG0580024656.01.T01:CDS | 50.0% | |
| ! | ATACGAGCTTTGGCCATGAC+AGG | + | Chr5:7798309-7798328 | None:intergenic | 50.0% |
| ! | GGCTGAGGTTAGTTGTGGAT+TGG | - | Chr5:7798869-7798888 | MsG0580024656.01.T01:CDS | 50.0% |
| ! | TACGAGCTTTGGCCATGACA+GGG | + | Chr5:7798308-7798327 | None:intergenic | 50.0% |
| !! | TTGTGGATTGGGCGAAGCTA+TGG | - | Chr5:7798881-7798900 | MsG0580024656.01.T01:CDS | 50.0% |
| CCAGCAGCAAACTGCACAAC+AGG | + | Chr5:7798696-7798715 | None:intergenic | 55.0% | |
| GACGGAGAATGGGGAGGATT+TGG | + | Chr5:7798085-7798104 | None:intergenic | 55.0% | |
| GACTTTGACGGAGAATGGGG+AGG | + | Chr5:7798091-7798110 | None:intergenic | 55.0% | |
| GCTCGTATCGCTGAAGAAGC+CGG | - | Chr5:7798168-7798187 | MsG0580024656.01.T01:CDS | 55.0% | |
| GGAGAATGGGGAGGATTTGG+TGG | + | Chr5:7798082-7798101 | None:intergenic | 55.0% | |
| GGATTGGGCGAAGCTATGGT+TGG | - | Chr5:7798885-7798904 | MsG0580024656.01.T01:CDS | 55.0% | |
| GTCGTAACCGTCTACGGCAA+CGG | - | Chr5:7798030-7798049 | MsG0580024656.01.T01:CDS | 55.0% | |
| TCCGGAGTCGTAACCGTCTA+CGG | - | Chr5:7798024-7798043 | MsG0580024656.01.T01:CDS | 55.0% | |
| TGGCAGCACCTTCGCGAATA+CGG | + | Chr5:7798491-7798510 | None:intergenic | 55.0% | |
| ! | AGCTTTGGCCATGACAGGGA+TGG | + | Chr5:7798304-7798323 | None:intergenic | 55.0% |
| ! | AGGCCGACTTTGACGGAGAA+TGG | + | Chr5:7798096-7798115 | None:intergenic | 55.0% |
| ! | GCCGACTTTGACGGAGAATG+GGG | + | Chr5:7798094-7798113 | None:intergenic | 55.0% |
| ! | GGCCGACTTTGACGGAGAAT+GGG | + | Chr5:7798095-7798114 | None:intergenic | 55.0% |
| ! | TTGAGCGAGGCCGACTTTGA+CGG | + | Chr5:7798103-7798122 | None:intergenic | 55.0% |
| !! | CCTGTTGTGCAGTTTGCTGC+TGG | - | Chr5:7798693-7798712 | MsG0580024656.01.T01:CDS | 55.0% |
| !! | GAATGGGGAGGATTTGGTGG+TGG | + | Chr5:7798079-7798098 | None:intergenic | 55.0% |
| !! | GGTGGTGGTGGAGGTTGTTT+CGG | + | Chr5:7798064-7798083 | None:intergenic | 55.0% |
| !! | GTTGTGCAGTTTGCTGCTGG+TGG | - | Chr5:7798696-7798715 | MsG0580024656.01.T01:CDS | 55.0% |
| ATCATCAACGCCGCATCCGC+CGG | + | Chr5:7798732-7798751 | None:intergenic | 60.0% | |
| GACACGCTCCAAGGCCATGA+CGG | + | Chr5:7798202-7798221 | None:intergenic | 60.0% | |
| GAGTGCACCGTTGCCGTAGA+CGG | + | Chr5:7798040-7798059 | None:intergenic | 60.0% | |
| GCCGTAGACGGTTACGACTC+CGG | + | Chr5:7798028-7798047 | None:intergenic | 60.0% | |
| GCTCTTCGCCGTATTCGCGA+AGG | - | Chr5:7798480-7798499 | MsG0580024656.01.T01:CDS | 60.0% | |
| GGATCCGGCGAAAAGAGCGA+GGG | - | Chr5:7798803-7798822 | MsG0580024656.01.T01:CDS | 60.0% | |
| GGCCATGACAGGGATGGTGA+CGG | + | Chr5:7798298-7798317 | None:intergenic | 60.0% | |
| TACGGCGAAGAGCTTCACCG+AGG | + | Chr5:7798473-7798492 | None:intergenic | 60.0% | |
| ! | ATCGCCCTCGCTCTTTTCGC+CGG | + | Chr5:7798810-7798829 | None:intergenic | 60.0% |
| !! | CATGACAGGGATGGTGACGG+CGG | + | Chr5:7798295-7798314 | None:intergenic | 60.0% |
| !! | GCAGTTTGCTGCTGGTGGTG+TGG | - | Chr5:7798701-7798720 | MsG0580024656.01.T01:CDS | 60.0% |
| !! | GCGGCGTTGATGATGCAGCT+TGG | - | Chr5:7798738-7798757 | MsG0580024656.01.T01:CDS | 60.0% |
| !! | GGAGGATTTGGTGGTGGTGG+AGG | + | Chr5:7798073-7798092 | None:intergenic | 60.0% |
| !! | TGGGGAGGATTTGGTGGTGG+TGG | + | Chr5:7798076-7798095 | None:intergenic | 60.0% |
| CGCCGTCACCATCCCTGTCA+TGG | - | Chr5:7798293-7798312 | MsG0580024656.01.T01:CDS | 65.0% | |
| CGTCCATGATGACACCGCCG+CGG | + | Chr5:7798131-7798150 | None:intergenic | 65.0% | |
| CTCGCTCAAATGCTCCGCGG+CGG | - | Chr5:7798114-7798133 | MsG0580024656.01.T01:CDS | 65.0% | |
| GGCCTCGCTCAAATGCTCCG+CGG | - | Chr5:7798111-7798130 | MsG0580024656.01.T01:CDS | 65.0% | |
| GGGATCCGGCGAAAAGAGCG+AGG | - | Chr5:7798802-7798821 | MsG0580024656.01.T01:CDS | 65.0% | |
| ! | TGCTGGTGGTGTGGCGACAC+CGG | - | Chr5:7798710-7798729 | MsG0580024656.01.T01:CDS | 65.0% |
| CCTTGAGCGCGGATGTCGGC+GGG | + | Chr5:7798225-7798244 | None:intergenic | 70.0% | |
| CGCTTGCGCCGTCATGGCCT+TGG | - | Chr5:7798191-7798210 | MsG0580024656.01.T01:CDS | 70.0% | |
| CTTGAGCGCGGATGTCGGCG+GGG | + | Chr5:7798224-7798243 | None:intergenic | 70.0% | |
| GAGCAACGCCGCCTTGAGCG+CGG | + | Chr5:7798236-7798255 | None:intergenic | 70.0% | |
| GCCGACATCCGCGCTCAAGG+CGG | - | Chr5:7798225-7798244 | MsG0580024656.01.T01:CDS | 70.0% | |
| GCCGCCTTGAGCGCGGATGT+CGG | + | Chr5:7798229-7798248 | None:intergenic | 70.0% | |
| GCCTTGAGCGCGGATGTCGG+CGG | + | Chr5:7798226-7798245 | None:intergenic | 70.0% | |
| TGTGGCGACACCGGCGGATG+CGG | - | Chr5:7798719-7798738 | MsG0580024656.01.T01:CDS | 70.0% | |
| ! | CGCCGCGGAGCATTTGAGCG+AGG | + | Chr5:7798116-7798135 | None:intergenic | 70.0% |
| ! | TGGTGGTGTGGCGACACCGG+CGG | - | Chr5:7798713-7798732 | MsG0580024656.01.T01:CDS | 70.0% |
| !! | GCTCCGCGGCGGTGTCATCA+TGG | - | Chr5:7798125-7798144 | MsG0580024656.01.T01:CDS | 70.0% |
| AGCCGGCGCTTGCGCCGTCA+TGG | - | Chr5:7798185-7798204 | MsG0580024656.01.T01:CDS | 75.0% | |
| CCCGCCGACATCCGCGCTCA+AGG | - | Chr5:7798222-7798241 | MsG0580024656.01.T01:CDS | 75.0% | |
| GGCCATGACGGCGCAAGCGC+CGG | + | Chr5:7798190-7798209 | None:intergenic | 75.0% | |
| GTCGGCGGGGACACGCTCCA+AGG | + | Chr5:7798211-7798230 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 7798015 | 7798959 | 7798015 | ID=MsG0580024656.01;Name=MsG0580024656.01 |
| Chr5 | mRNA | 7798015 | 7798959 | 7798015 | ID=MsG0580024656.01.T01;Parent=MsG0580024656.01;Name=MsG0580024656.01.T01;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|314 |
| Chr5 | exon | 7798015 | 7798959 | 7798015 | ID=MsG0580024656.01.T01:exon:2394;Parent=MsG0580024656.01.T01 |
| Chr5 | CDS | 7798015 | 7798959 | 7798015 | ID=MsG0580024656.01.T01:cds;Parent=MsG0580024656.01.T01 |
| Gene Sequence |
| Protein sequence |
