AlfalfaGEDB | MsG0880046062.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046062.01

KEGG: K14638
GO: GO:0016020 GO:0022857 GO:0055085
PFAM: PF00854 PF13456

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046062.01.T01	XP_003608649.3	75.042	601	24	6	48	535	81	668	0	859

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046062.01.T01	Q9LQL2	58.303	554	123	7	56	514	14	554	0	603

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046062.01.T01	A0A396IFW9	75.042	601	24	6	48	535	81	668	0.0	859

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180004112.01	MsG0880046062.01	0.806143	9.490908e-50	5.112829e-47
MsG0280008139.01	MsG0880046062.01	0.822582	2.193625e-53	1.843754e-50
MsG0280008715.01	MsG0880046062.01	0.805680	1.187588e-49	6.322404e-47
MsG0280008717.01	MsG0880046062.01	0.805474	1.311834e-49	6.946678e-47
MsG0380013342.01	MsG0880046062.01	0.800872	1.175498e-48	5.534135e-46
MsG0480021564.01	MsG0880046062.01	0.814977	1.170351e-51	7.967820e-49
MsG0480022918.01	MsG0880046062.01	0.810671	1.026421e-50	6.226011e-48
MsG0780041191.01	MsG0880046062.01	0.858103	1.036273e-62	2.615187e-59
MsG0780041301.01	MsG0880046062.01	0.857125	2.019995e-62	4.933282e-59

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046062.01.T01	MTR_4g098800	75.042	601	24	6	48	535	5	592	0.0	858
MsG0880046062.01.T01	MTR_4g098800	73.151	622	41	6	27	535	49	657	0.0	857
MsG0880046062.01.T01	MTR_5g014150	60.891	606	100	7	54	535	13	605	0.0	671
MsG0880046062.01.T01	MTR_7g010820	57.297	555	125	8	56	514	3	541	0.0	575
MsG0880046062.01.T01	MTR_1g116930	49.400	500	165	8	100	514	31	527	1.24e-143	431
MsG0880046062.01.T01	MTR_7g005930	49.296	497	166	6	102	514	45	539	2.32e-141	426
MsG0880046062.01.T01	MTR_7g013270	50.301	499	160	6	102	514	100	596	6.02e-137	416
MsG0880046062.01.T01	MTR_4g024930	41.276	533	219	11	56	514	13	525	2.92e-112	350
MsG0880046062.01.T01	MTR_4g015080	35.780	545	250	8	56	514	11	541	7.82e-99	315
MsG0880046062.01.T01	MTR_3g462710	36.081	546	247	7	57	514	2	533	1.50e-97	311

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046062.01.T01	AT1G32450	58.303	554	123	7	56	514	14	554	0.0	603
MsG0880046062.01.T01	AT4G21680	56.080	551	130	8	60	514	9	543	0.0	538
MsG0880046062.01.T01	AT5G19640	49.697	495	158	8	102	514	69	554	1.70e-139	422
MsG0880046062.01.T01	AT3G54140	35.897	546	248	7	57	514	2	533	8.92e-106	333
MsG0880046062.01.T01	AT3G54140	35.897	546	248	7	57	514	2	533	8.92e-106	333
MsG0880046062.01.T01	AT2G02040	34.664	551	257	6	53	514	15	551	1.95e-100	320
MsG0880046062.01.T01	AT1G62200	34.515	536	249	6	65	514	38	557	4.82e-99	316
MsG0880046062.01.T01	AT1G62200	32.743	565	249	7	65	514	38	586	7.65e-93	300
MsG0880046062.01.T01	AT1G62200	32.743	565	249	7	65	514	52	600	1.06e-92	301
MsG0880046062.01.T01	AT2G02020	34.674	522	251	9	56	514	19	513	6.93e-91	293

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Find 133 sgRNAs with CRISPR-Local

Find 616 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTGCTATCTTTCA+AGG	0.405049	8:+68461002	MsG0880046062.01.T01:CDS
AAACATGGTATCATAGCTAC+CGG	0.540822	8:+68464863	MsG0880046062.01.T01:CDS
AAAGGAGGCCACATAACCCA+TGG	0.645622	8:+68462037	MsG0880046062.01.T01:CDS
AAAGTAAATCATTTCCAATA+TGG	0.400538	8:+68462832	MsG0880046062.01.T01:CDS
AAAGTGAAGGGCCTCGAGTA+AGG	0.460842	8:-68455063	None:intergenic
AAATGAAGATGGCTACGCTG+AGG	0.695724	8:-68462251	None:intergenic
AACAATGTTAGCAAGTGGAC+TGG	0.597557	8:+68460918	MsG0880046062.01.T01:CDS
AAGATGAAGGATTAGGCTCT+TGG	0.367463	8:+68461433	MsG0880046062.01.T01:intron
AAGCTAGACATGCTTGCTGG+TGG	0.641340	8:-68462222	None:intergenic
AAGTTTCCAGGGATCCATCC+TGG	0.501655	8:-68462666	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATGTGCTATCTTTCA+AGG	+	Chr8:68461002-68461021	MsG0880046062.01.T01:CDS	30.0%
AAAGGAGAGTTATTCAAAAG+TGG	+	Chr8:68461339-68461358	MsG0880046062.01.T01:intron	30.0%
AAAGTGTATAAAAAAGGGGA+AGG	+	Chr8:68455825-68455844	MsG0880046062.01.T01:intron	30.0%
AAATAAGATTAACCTGACGT+AGG	+	Chr8:68458968-68458987	MsG0880046062.01.T01:intron	30.0%
AAATGGAAAACTTGAATGTG+GGG	+	Chr8:68461195-68461214	MsG0880046062.01.T01:intron	30.0%
AACGCACTTATTTGACAATA+TGG	+	Chr8:68455712-68455731	MsG0880046062.01.T01:intron	30.0%
AAGAAAAGAAAAGAGAGTGA+AGG	+	Chr8:68459356-68459375	MsG0880046062.01.T01:intron	30.0%
AAGACCCTTTGTTAAATTAC+GGG	+	Chr8:68455221-68455240	MsG0880046062.01.T01:intron	30.0%
AAGACTCAAAGACATGTTAA+AGG	-	Chr8:68459943-68459962	None:intergenic	30.0%
AAGTGTATAAAAAAGGGGAA+GGG	+	Chr8:68455826-68455845	MsG0880046062.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	68455035	68465211	68455035	ID=MsG0880046062.01;Name=MsG0880046062.01
Chr8	mRNA	68455035	68465211	68455035	ID=MsG0880046062.01.T01;Parent=MsG0880046062.01;Name=MsG0880046062.01.T01;_AED=0.47;_eAED=0.49;_QI=0\|0.18\|0.16\|0.83\|1\|1\|12\|0\|678
Chr8	exon	68455035	68455190	68455035	ID=MsG0880046062.01.T01:exon:16853;Parent=MsG0880046062.01.T01
Chr8	exon	68457565	68457678	68457565	ID=MsG0880046062.01.T01:exon:16854;Parent=MsG0880046062.01.T01
Chr8	exon	68458754	68458793	68458754	ID=MsG0880046062.01.T01:exon:16855;Parent=MsG0880046062.01.T01
Chr8	exon	68460820	68461037	68460820	ID=MsG0880046062.01.T01:exon:16856;Parent=MsG0880046062.01.T01
Chr8	exon	68461137	68461188	68461137	ID=MsG0880046062.01.T01:exon:16857;Parent=MsG0880046062.01.T01
Chr8	exon	68461269	68461357	68461269	ID=MsG0880046062.01.T01:exon:16858;Parent=MsG0880046062.01.T01
Chr8	exon	68461448	68461695	68461448	ID=MsG0880046062.01.T01:exon:16859;Parent=MsG0880046062.01.T01
Chr8	exon	68461988	68462058	68461988	ID=MsG0880046062.01.T01:exon:16860;Parent=MsG0880046062.01.T01
Chr8	exon	68462145	68462696	68462145	ID=MsG0880046062.01.T01:exon:16861;Parent=MsG0880046062.01.T01
Chr8	exon	68462773	68462858	68462773	ID=MsG0880046062.01.T01:exon:16862;Parent=MsG0880046062.01.T01
Chr8	exon	68464718	68464893	68464718	ID=MsG0880046062.01.T01:exon:16863;Parent=MsG0880046062.01.T01
Chr8	exon	68464977	68465211	68464977	ID=MsG0880046062.01.T01:exon:16864;Parent=MsG0880046062.01.T01
Chr8	CDS	68455035	68455190	68455035	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68457565	68457678	68457565	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68458754	68458793	68458754	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68460820	68461037	68460820	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68461137	68461188	68461137	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68461269	68461357	68461269	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68461448	68461695	68461448	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68461988	68462058	68461988	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68462145	68462696	68462145	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68462773	68462858	68462773	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68464718	68464893	68464718	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01
Chr8	CDS	68464977	68465211	68464977	ID=MsG0880046062.01.T01:cds;Parent=MsG0880046062.01.T01

Gene Sequence

>MsG0880046062.01.T01

ATGACAGTTTTTGAGGGGGAGGCAGTAGCCTTACTCGAGGCCCTTCACTTTGCTGATGCAAACAGATGGGACCGAGTTGTCTTCGAGTCCGACTCATCTACTCTAGTGCATGCTCTATCGTTTCGGAGTCATGATGATTCAGAATTTTGTGCTATTGGGAAGTTCAAAGAAGAAACAGAAGAGTTAACTCTTGATGGGAGTGTTGATTGGCATGGTCGCCCAGCAAACAGAGCCAAATCTGGGAGATGGTTGCGGGAACTATTATACTCTGGTTTTGATTTGTTGGCTGATTCTTACTCGACCGTTTTCGTGAACCAAGGTCTAGCAACCTTAGCATTCTTTGGAGTTGGAGTGAACCTAGTTCTGTTCCTGACAAGGGTGTTGGGTCAAGACAATGCTGCTGCTGCTAACAATGTTAGCAAGTGGACTGGCACAGTTTACATCTTCTCTCTTGTTGGTGCTTTCCTAAGTGATTCTTATTGGGGAAGATACAAAACATGTGCTATCTTTCAAGGCATTTTTGTAACTGGTCTAGTATCTTTGTCCGTTACAACATACCTTGCTTTGCTTAGACCAAAAGCCTTAGGAAATGGAGGATATCAACCAAACATTGCAACATTTGGTGCTGACCCATTTGATGAGGATCACTCAAAGGAGAGTTATTCAAAAGCTCTTGGGTTTTGGGCTTCTGCTGGGTCTGCCTTTTTGGCTCTTGTACTTTTTCTTGTTGGCACCCCAAAATATAGACACTTTAAACCTTGTGGCAATCCTCTTTCTAGATTCTGCCAAGTGTTTTTTGCTGCTTCAAGGAAATTGGGAGTTCAAATGACATCAAATGGAGATGATTTGTATGTCACAGATGAAAAGGAGTCTTCTAACAACTCCAACAGAAAGATTCTCCACACACATGGTTTCAAGTTTTTGGATAGGGCAGCTTATATAACTTCAAGAGATTTAGAGGTCCAAAAAGGAGGCCACATAACCCATGTAGTTTTCACTCAGATGGCTTCCCTTTTTGTGGAGCAAGGCGCCGCAATGAAAACCACAATTTCCAGTTTCAAAATACCACCAGCAAGCATGTCTAGCTTCGACATCCTCAGCGTAGCCATCTTCATTTTCTTCTACCGTCGAGTACTTGATCCACTCGTCGGAAAACTCAAAAAAACAAGTTCCAAGGGACTCACTGAACTTCAAAGAATGGGAAGCGGTCCTCATATAGCTATAGTCGCAATGGTTACAGCTGGAATAGTTGAATGTTATAGGCTTAAGTATGCAAAACAAGGTGACACAAGCTCTCTAAGTATCTTCTGGCAAATTCCTCAGTATGCACTTATAGGAGCTTCTGAGGTTTTTATGTATGTAGGACAATTAGAATTCTTCAATGCTCAAACACCTGATGGATTGAAGAGCTTTGGAAGTGCACTTTGCATGACAAGTATCTCACTTGGGAACTATGTGAGTAGCTTAATTGTTAGTATTGTTATGAAGATTTCAACTGAAGATCACATGCCAGGATGGATCCCTGGAAACTTGAATAGAGGGTTTCAGAATATTCAGATGGAATGCAAATATGATAACAATGATGAGCCTAGTAGCTGCAAAGTAAATCATTTCCAATATGGAGAAGTTTCCGCTTTGGATGTCACACTCGAGATGTCCAATATTGGGTGTGTTAAGATTCTCACATGGCTTAAATATCAATTTATAAGTGAGTGCAATCTTCAACTTCAAAGTCAGTTTTATAAGGTTGAGTTAGGCCAAATCCAAGTTCAAACATGGTATCATAGCTACCGGTTTTGGGGTTTATTTGTGGCAACCTTAATCATATATTGTTTTTGGGCTGTATCATCCTTTGTTACAACTTACTACTATCTCCACCATGTTCCGGCCAAATCTGCTGTGTTCCATCGTGAATCACGTCCCATCGTCGATACCTCACAAACATCACGAAAAACTGAGACGCGTTATACGAGAACCAATTCTGTCGGAGCATCCACAACCTCACACGCCTCCTTCGTCCCGACGCGTGATGTGTGA

Protein sequence

>MsG0880046062.01.T01

MTVFEGEAVALLEALHFADANRWDRVVFESDSSTLVHALSFRSHDDSEFCAIGKFKEETEELTLDGSVDWHGRPANRAKSGRWLRELLYSGFDLLADSYSTVFVNQGLATLAFFGVGVNLVLFLTRVLGQDNAAAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVTGLVSLSVTTYLALLRPKALGNGGYQPNIATFGADPFDEDHSKESYSKALGFWASAGSAFLALVLFLVGTPKYRHFKPCGNPLSRFCQVFFAASRKLGVQMTSNGDDLYVTDEKESSNNSNRKILHTHGFKFLDRAAYITSRDLEVQKGGHITHVVFTQMASLFVEQGAAMKTTISSFKIPPASMSSFDILSVAIFIFFYRRVLDPLVGKLKKTSSKGLTELQRMGSGPHIAIVAMVTAGIVECYRLKYAKQGDTSSLSIFWQIPQYALIGASEVFMYVGQLEFFNAQTPDGLKSFGSALCMTSISLGNYVSSLIVSIVMKISTEDHMPGWIPGNLNRGFQNIQMECKYDNNDEPSSCKVNHFQYGEVSALDVTLEMSNIGCVKILTWLKYQFISECNLQLQSQFYKVELGQIQVQTWYHSYRFWGLFVATLIIYCFWAVSSFVTTYYYLHHVPAKSAVFHRESRPIVDTSQTSRKTETRYTRTNSVGASTTSHASFVPTRDV*