AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046247.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046247.01.T01 MTR_4g103920 97.015 335 5 1 1 335 10 339 0.0 657
MsG0880046247.01.T01 MTR_3g085850 87.349 332 37 1 1 332 11 337 0.0 600
MsG0880046247.01.T01 MTR_6g022630 83.750 320 47 1 1 320 8 322 0.0 552
MsG0880046247.01.T01 MTR_3g085850 87.542 297 32 1 36 332 1 292 0.0 536
MsG0880046247.01.T01 MTR_4g103920 96.198 263 5 1 1 263 10 267 0.0 512
MsG0880046247.01.T01 MTR_2g065470 69.880 332 94 2 1 332 28 353 1.85e-168 473
MsG0880046247.01.T01 MTR_2g065470 69.880 332 94 2 1 332 87 412 2.03e-168 475
MsG0880046247.01.T01 MTR_2g065470 70.312 320 89 2 1 320 87 400 1.04e-162 460
MsG0880046247.01.T01 MTR_8g046560 79.688 256 33 5 77 320 10 258 4.80e-132 387
MsG0880046247.01.T01 MTR_3g115920 47.647 340 164 8 1 334 90 421 5.41e-84 261
MsG0880046247.01.T01 MTR_3g115920 47.546 326 157 8 1 320 90 407 3.40e-80 250
MsG0880046247.01.T01 MTR_8g464820 83.660 153 11 3 170 322 1 139 7.96e-78 243
MsG0880046247.01.T01 MTR_7g084800 45.758 330 168 6 1 327 74 395 2.17e-77 243
MsG0880046247.01.T01 MTR_3g115920 49.315 292 137 6 47 334 3 287 3.20e-75 234
MsG0880046247.01.T01 MTR_1680s0010 44.138 145 71 2 170 310 1 139 3.86e-30 118
MsG0880046247.01.T01 MTR_2g078600 46.970 132 53 3 159 277 19 146 1.93e-27 105
MsG0880046247.01.T01 MTR_0776s0010 33.058 121 75 4 1 118 1793 1910 6.03e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046247.01.T01 AT3G04120 87.087 333 38 1 1 333 10 337 0.0 597
MsG0880046247.01.T01 AT1G13440 86.486 333 40 1 1 333 10 337 0.0 593
MsG0880046247.01.T01 AT1G13440 79.279 333 36 2 1 333 10 309 0.0 525
MsG0880046247.01.T01 AT1G79530 71.687 332 88 2 1 332 91 416 9.09e-173 486
MsG0880046247.01.T01 AT1G16300 71.084 332 90 2 1 332 89 414 2.85e-170 480
MsG0880046247.01.T01 AT1G42970 46.471 340 168 8 1 334 86 417 2.34e-86 267
MsG0880046247.01.T01 AT1G12900 47.273 330 163 6 1 327 20 341 4.65e-82 253
MsG0880046247.01.T01 AT1G12900 47.273 330 163 6 1 327 20 341 4.65e-82 253
MsG0880046247.01.T01 AT1G12900 47.273 330 163 6 1 327 69 390 1.32e-81 253
MsG0880046247.01.T01 AT1G12900 47.273 330 163 6 1 327 111 432 3.64e-81 254
MsG0880046247.01.T01 AT3G26650 46.364 330 166 6 1 327 66 387 5.79e-80 249
MsG0880046247.01.T01 AT1G12900 52.675 243 108 3 86 327 72 308 7.79e-69 218

Find 107 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTACCGGATTTAATT+TGG 0.089951 8:-70989901 MsG0880046247.01.T01:three_prime_UTR
CTTAACAAAATTGTCATTTA+AGG 0.104366 8:+70990336 None:intergenic
ATGGCCCATCAACAGTCTTC+TGG 0.178049 8:+70991016 None:intergenic
CTAGCCCATGGGATCTCTTC+TGG 0.197666 8:+70992192 None:intergenic
TCTTCCACCTCTCCAGTCTT+TGG 0.239282 8:+70990990 None:intergenic
TAGGTTATCAATGACAGATT+TGG 0.312865 8:-70991173 MsG0880046247.01.T01:CDS
TGTTCGTAACTGACAGGATT+TGG 0.316178 8:-70992745 None:intergenic
CCAAGACAACTCGTTGCTTA+TGG 0.330150 8:+70989931 None:intergenic
GCATTTACCGGATTTAATTT+GGG 0.345001 8:-70989900 MsG0880046247.01.T01:three_prime_UTR
CTGTGAGCAAAGACAGTTAC+TGG 0.361869 8:+70992428 None:intergenic
TAGCCCATGGGATCTCTTCT+GGG 0.364602 8:+70992193 None:intergenic
GGCAGAAATGATGACCTTCT+TGG 0.370496 8:+70991401 None:intergenic
AAAACACTACGGTTCAATAA+GGG 0.372319 8:+70989967 None:intergenic
TGGCCCATCAACAGTCTTCT+GGG 0.376977 8:+70991017 None:intergenic
GTCGTCTCTACCGACTTTAT+TGG 0.379304 8:-70990528 MsG0880046247.01.T01:CDS
ATGACAACGAGTTGGGTTAC+AGG 0.391838 8:-70990300 MsG0880046247.01.T01:intron
AGCAGCTTTGATTTGATCAT+AGG 0.392271 8:+70990707 None:intergenic
AAGGGGCAAGCTTCAAGTTC+AGG 0.394337 8:+70989985 None:intergenic
CAAAGCTGCTGCTCATTTGA+AGG 0.396278 8:-70992118 MsG0880046247.01.T01:intron
CATGGCGTATATGTGAAACT+TGG 0.413845 8:+70989859 None:intergenic
ATTTGGAAGAATCGGACGTT+TGG 0.417594 8:-70992728 MsG0880046247.01.T01:CDS
GCCGTGGTAGTGCTATAAAT+TGG 0.427633 8:-70990082 MsG0880046247.01.T01:three_prime_UTR
AACATGGGAGCATCCTTACT+AGG 0.429169 8:+70991378 None:intergenic
CCTCTCCAGTCTTTGGCTGA+TGG 0.430890 8:+70990997 None:intergenic
ATTTAAGGCAATTCCTGCCT+TGG 0.435729 8:+70990351 None:intergenic
CATCATTTCTGCCCCTAGTA+AGG 0.438346 8:-70991391 MsG0880046247.01.T01:CDS
CCATAAGCAACGAGTTGTCT+TGG 0.444128 8:-70989931 MsG0880046247.01.T01:three_prime_UTR
AGCAGCAGCTTTGTCCTTGT+CGG 0.451014 8:+70992128 None:intergenic
GACTCTAAAACCCTTCTCTT+CGG 0.451972 8:-70992458 MsG0880046247.01.T01:CDS
ATTATCACCCAAATTAAATC+CGG 0.452564 8:+70989893 None:intergenic
GACAGATTTGGCATTGTTGA+GGG 0.455882 8:-70991161 MsG0880046247.01.T01:CDS
GATGCTCCCATGTTTGTTGT+TGG 0.458991 8:-70991369 MsG0880046247.01.T01:CDS
ATGGGCCATCAGCCAAAGAC+TGG 0.460505 8:-70991002 MsG0880046247.01.T01:CDS
TTTCATCACCACTGATTACA+TGG 0.466658 8:-70992650 MsG0880046247.01.T01:intron
GCCACCCAGAAGACTGTTGA+TGG 0.469781 8:-70991021 MsG0880046247.01.T01:CDS
TCTTGGTATGACAACGAGTT+GGG 0.473725 8:-70990307 MsG0880046247.01.T01:CDS
AAAGTGCTTCCTGCTTTGAA+TGG 0.474900 8:-70990813 MsG0880046247.01.T01:CDS
TTTAAGTATGACAGTGTTCA+CGG 0.475837 8:-70992512 MsG0880046247.01.T01:CDS
CTGACAGGATTTGGAAGAAT+CGG 0.477978 8:-70992736 MsG0880046247.01.T01:CDS
GCTTTGAATGGAAAGTTGAC+TGG 0.484568 8:-70990801 MsG0880046247.01.T01:CDS
CTCTTGGTATGACAACGAGT+TGG 0.490488 8:-70990308 MsG0880046247.01.T01:CDS
CCTTCTCGAGCCTCACTGTA+AGG 0.498253 8:+70990736 None:intergenic
GGCAACTTGAAAGGAATCCT+TGG 0.503097 8:-70990567 MsG0880046247.01.T01:CDS
AACATCATTCCTAGCAGCAC+TGG 0.508273 8:-70990955 MsG0880046247.01.T01:CDS
CAGTAACTGTCTTTGCTCAC+AGG 0.512766 8:-70992427 MsG0880046247.01.T01:intron
AGCATCTTTGATGCCAAGGC+AGG 0.515199 8:-70990364 MsG0880046247.01.T01:CDS
ACATGGGAGCATCCTTACTA+GGG 0.515453 8:+70991379 None:intergenic
CTGGCTTCTGACCGAAGAGA+AGG 0.515502 8:+70992447 None:intergenic
GTCAACTTTCCATTCAAAGC+AGG 0.517781 8:+70990804 None:intergenic
GATTCCTTTCAAGTTGCCCT+CGG 0.519543 8:+70990572 None:intergenic
TGACAGATTTGGCATTGTTG+AGG 0.526967 8:-70991162 MsG0880046247.01.T01:CDS
TCTGTGTCTTACTAGGCTGT+TGG 0.529290 8:-70990837 MsG0880046247.01.T01:intron
GTCAAGCATCTTTGATGCCA+AGG 0.530071 8:-70990368 MsG0880046247.01.T01:CDS
CTGCCTTGCACCACTTGCTA+AGG 0.531519 8:-70991283 MsG0880046247.01.T01:intron
CCGACTTTATTGGTGATACC+AGG 0.534272 8:-70990518 MsG0880046247.01.T01:intron
GAGTCCGAGGGCAACTTGAA+AGG 0.535557 8:-70990576 MsG0880046247.01.T01:CDS
GTTGGTAGTGCAGCTAGCAT+TGG 0.535726 8:+70991305 None:intergenic
ACCACTGTTCATTCTATCAC+TGG 0.537052 8:-70991131 MsG0880046247.01.T01:CDS
TTTCTGCAGGGAGGAGTCCG+AGG 0.540118 8:-70990589 MsG0880046247.01.T01:intron
AAAGAGGCCTAACGGCTGCT+AGG 0.542903 8:+70990030 None:intergenic
CAACTGAGACATCCACAGTT+GGG 0.550377 8:+70990763 None:intergenic
GAGATCCCATGGGCTAGCAC+TGG 0.550739 8:-70992186 MsG0880046247.01.T01:CDS
CTGTTCATTCTATCACTGGT+AGG 0.551991 8:-70991127 MsG0880046247.01.T01:CDS
AGCTTTGATTTGATCATAGG+TGG 0.553575 8:+70990710 None:intergenic
ATGACAGTGTTCACGGACAA+TGG 0.557529 8:-70992505 MsG0880046247.01.T01:CDS
AATCTAGGGTGGTGCCAAGA+AGG 0.565778 8:-70991415 MsG0880046247.01.T01:intron
ACAACTGAGACATCCACAGT+TGG 0.572472 8:+70990762 None:intergenic
TCAGCACCAGTGCTAGCCCA+TGG 0.575207 8:+70992180 None:intergenic
TTAGCAGCTCCAGTGCTGCT+AGG 0.576093 8:+70990946 None:intergenic
GAATGGAAAGTTGACTGGAA+TGG 0.578821 8:-70990796 MsG0880046247.01.T01:CDS
ATGTAATCAGTGGTGATGAA+AGG 0.581417 8:+70992652 None:intergenic
AGCAAGTGGTGCAAGGCAGT+TGG 0.584713 8:+70991287 None:intergenic
AAACACTACGGTTCAATAAG+GGG 0.585174 8:+70989968 None:intergenic
TTGGAGATGATATCAAACTC+TGG 0.587916 8:+70991324 None:intergenic
GTTAACACCAACAACAAACA+TGG 0.591563 8:+70991362 None:intergenic
GGAACCCAGAAGAGATCCCA+TGG 0.591598 8:-70992197 MsG0880046247.01.T01:CDS
AACGATGAGGTCAACCACAC+GGG 0.595280 8:+70990137 None:intergenic
TGGCTTCTGACCGAAGAGAA+GGG 0.598953 8:+70992448 None:intergenic
TTTGATTTGATCATAGGTGG+CGG 0.599256 8:+70990713 None:intergenic
CAGCACCAGTGCTAGCCCAT+GGG 0.602177 8:+70992181 None:intergenic
TGTTGTTGGTGTTAACGAGA+AGG 0.604083 8:-70991355 MsG0880046247.01.T01:CDS
GATATTATTGTTGAGTCCAC+CGG 0.613504 8:-70992159 MsG0880046247.01.T01:CDS
AGACATCCACAGTTGGGACA+CGG 0.619930 8:+70990769 None:intergenic
GGTAGAGACGACATCGTCCT+CGG 0.620352 8:+70990539 None:intergenic
GAACGATGAGGTCAACCACA+CGG 0.620524 8:+70990136 None:intergenic
TCAGCCAAAGACTGGAGAGG+TGG 0.620752 8:-70990994 MsG0880046247.01.T01:CDS
CTATTAGCCTAGCAGCCGTT+AGG 0.623959 8:-70990037 MsG0880046247.01.T01:three_prime_UTR
TTCTGCAGGGAGGAGTCCGA+GGG 0.627559 8:-70990588 MsG0880046247.01.T01:intron
CCTTACAGTGAGGCTCGAGA+AGG 0.630029 8:-70990736 MsG0880046247.01.T01:CDS
ATACCTTAGCAAGTGGTGCA+AGG 0.631223 8:+70991280 None:intergenic
CCACCCAGAAGACTGTTGAT+GGG 0.632542 8:-70991020 MsG0880046247.01.T01:CDS
GGCATTCCGTGTCCCAACTG+TGG 0.636309 8:-70990775 MsG0880046247.01.T01:CDS
CATCGTCCTCGGTGTAACCA+AGG 0.636984 8:+70990550 None:intergenic
CCTGGTATCACCAATAAAGT+CGG 0.637238 8:+70990518 None:intergenic
GCTAGGAATGATGTTAAATG+AGG 0.638580 8:+70990963 None:intergenic
GCTCATAATACCTTAGCAAG+TGG 0.648538 8:+70991273 None:intergenic
CCCATCAACAGTCTTCTGGG+TGG 0.650761 8:+70991020 None:intergenic
ATTTGGTACCATGTAATCAG+TGG 0.653971 8:+70992642 None:intergenic
TTTAAGCTGTTACATTGCCG+TGG 0.662429 8:-70990098 MsG0880046247.01.T01:exon
CCATCAGCCAAAGACTGGAG+AGG 0.667444 8:-70990997 MsG0880046247.01.T01:CDS
TTAACACCAACAACAAACAT+GGG 0.669578 8:+70991363 None:intergenic
CATGGGAGCATCCTTACTAG+GGG 0.690619 8:+70991380 None:intergenic
GCCAATTTATAGCACTACCA+CGG 0.691846 8:+70990081 None:intergenic
CAGTTGTTGACCTTACAGTG+AGG 0.703068 8:-70990746 MsG0880046247.01.T01:CDS
GAACCCAGAAGAGATCCCAT+GGG 0.703112 8:-70992196 MsG0880046247.01.T01:CDS
ACCAGTGATAGAATGAACAG+TGG 0.744850 8:+70991130 None:intergenic
AGGAATCCTTGGTTACACCG+AGG 0.796368 8:-70990556 MsG0880046247.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTATTACATTTAAAAAAG+AGG + Chr8:70992538-70992557 None:intergenic 15.0%
!! ATTGGTATAATATTGATATT+TGG - Chr8:70990284-70990303 MsG0880046247.01.T01:intron 15.0%
!! AACCTACAAAATAAATAAAC+AGG + Chr8:70991362-70991381 None:intergenic 20.0%
!! GGATTTGATATCTTATTATT+TGG - Chr8:70991468-70991487 MsG0880046247.01.T01:intron 20.0%
!! TAATGTTTATATATGCAACT+AGG - Chr8:70990190-70990209 MsG0880046247.01.T01:intron 20.0%
!! TATGTATGTGTACTTAATTT+CGG - Chr8:70990217-70990236 MsG0880046247.01.T01:intron 20.0%
!! TGTATGTTGATATTATTATG+TGG - Chr8:70990649-70990668 MsG0880046247.01.T01:intron 20.0%
!! TGTTACTGTTTAATTAGTAT+TGG - Chr8:70990266-70990285 MsG0880046247.01.T01:intron 20.0%
!! TTAGAGAATAAAATATCAGT+TGG + Chr8:70991301-70991320 None:intergenic 20.0%
!! TTTAAAAGAGACAAATGTTA+CGG + Chr8:70990739-70990758 None:intergenic 20.0%
!!! AATTTTAGTAAACAGTAATC+AGG + Chr8:70990487-70990506 None:intergenic 20.0%
!!! CTTAACAAAATTGTCATTTA+AGG + Chr8:70992216-70992235 None:intergenic 20.0%
!!! GTTTTTGTTTGTTTAATCTA+GGG - Chr8:70991120-70991139 MsG0880046247.01.T01:CDS 20.0%
!!! TACCTGTTTATTTATTTTGT+AGG - Chr8:70991357-70991376 MsG0880046247.01.T01:CDS 20.0%
!!! TGTTTTTGTTTGTTTAATCT+AGG - Chr8:70991119-70991138 MsG0880046247.01.T01:CDS 20.0%
! AAATAAACAGGTAACAGTTA+TGG + Chr8:70991350-70991369 None:intergenic 25.0%
! ATTATCACCCAAATTAAATC+CGG + Chr8:70992659-70992678 None:intergenic 25.0%
! CTAAAATACTTGATCACAAA+GGG + Chr8:70991897-70991916 None:intergenic 25.0%
! CTTCTATTTACTGAATCTTA+TGG - Chr8:70991050-70991069 MsG0880046247.01.T01:intron 25.0%
! GCAGAAAATTAAACAAAACA+GGG + Chr8:70992388-70992407 None:intergenic 25.0%
! TGCAGAAAATTAAACAAAAC+AGG + Chr8:70992389-70992408 None:intergenic 25.0%
! TTATTCTCTAATTTCCATGT+TGG - Chr8:70991310-70991329 MsG0880046247.01.T01:CDS 25.0%
! TTTGAAGGTTTGTATTTCAT+TGG - Chr8:70990446-70990465 MsG0880046247.01.T01:intron 25.0%
!! AGTTTTTAATGCTCTTTTCA+TGG + Chr8:70992711-70992730 None:intergenic 25.0%
!! TTGGATTTTTATGCATTTAC+CGG - Chr8:70992637-70992656 MsG0880046247.01.T01:intron 25.0%
!!! ATATTACAATAGTTTCTAGC+AGG - Chr8:70991000-70991019 MsG0880046247.01.T01:CDS 25.0%
!!! TGTCTATTTTTTTGTGCTTT+AGG - Chr8:70990331-70990350 MsG0880046247.01.T01:CDS 25.0%
AAAAACACTACGGTTCAATA+AGG + Chr8:70992586-70992605 None:intergenic 30.0%
AAAACACTACGGTTCAATAA+GGG + Chr8:70992585-70992604 None:intergenic 30.0%
AACTATTATGTGCAGCAATT+GGG + Chr8:70990524-70990543 None:intergenic 30.0%
AATAGACAAACAAAAACCGA+AGG + Chr8:70989937-70989956 None:intergenic 30.0%
ATTAGACAACACAATAACAG+TGG + Chr8:70991664-70991683 None:intergenic 30.0%
CAGCATGAAAAGAATGAATT+AGG + Chr8:70991496-70991515 None:intergenic 30.0%
CAGGTAAATATTATACTAGC+AGG - Chr8:70992050-70992069 MsG0880046247.01.T01:intron 30.0%
CATTTAAAAAAGAGGCCTAA+CGG + Chr8:70992530-70992549 None:intergenic 30.0%
CTGCTAGTATAATATTTACC+TGG + Chr8:70992052-70992071 None:intergenic 30.0%
GCTAAAATACTTGATCACAA+AGG + Chr8:70991898-70991917 None:intergenic 30.0%
TAACAATACATTGCAAGTTG+TGG + Chr8:70991026-70991045 None:intergenic 30.0%
TAGGTTATCAATGACAGATT+TGG - Chr8:70991376-70991395 MsG0880046247.01.T01:CDS 30.0%
TCAACAATAAACCATACGAA+AGG + Chr8:70992289-70992308 None:intergenic 30.0%
TGCATTTACCGGATTTAATT+TGG - Chr8:70992648-70992667 MsG0880046247.01.T01:intron 30.0%
TTAACACCAACAACAAACAT+GGG + Chr8:70991189-70991208 None:intergenic 30.0%
TTCAAGAATTTCAACCAACT+AGG + Chr8:70992321-70992340 None:intergenic 30.0%
TTTAAGTATGACAGTGTTCA+CGG - Chr8:70990037-70990056 MsG0880046247.01.T01:three_prime_UTR 30.0%
TTTGTTTGTTTAATCTAGGG+TGG - Chr8:70991123-70991142 MsG0880046247.01.T01:CDS 30.0%
! ACTTAATTTCGGTGTAGATA+TGG - Chr8:70990228-70990247 MsG0880046247.01.T01:intron 30.0%
! ATTTTGTTAAGCTTGTCTCT+TGG - Chr8:70992225-70992244 MsG0880046247.01.T01:intron 30.0%
! CTATTTTCTAAACATGCTCA+TGG - Chr8:70990690-70990709 MsG0880046247.01.T01:intron 30.0%
! CTTAATTTCGGTGTAGATAT+GGG - Chr8:70990229-70990248 MsG0880046247.01.T01:intron 30.0%
! GCATTTACCGGATTTAATTT+GGG - Chr8:70992649-70992668 MsG0880046247.01.T01:intron 30.0%
! TTATTGAACCGTAGTGTTTT+TGG - Chr8:70992585-70992604 MsG0880046247.01.T01:intron 30.0%
! TTTTCATTCTGTGTCTTACT+AGG - Chr8:70991705-70991724 MsG0880046247.01.T01:intron 30.0%
! TTTTGTGTTATCAATGTTCC+AGG - Chr8:70992159-70992178 MsG0880046247.01.T01:CDS 30.0%
!! AGATCTGATTTATTTCTGTG+TGG - Chr8:70989994-70990013 MsG0880046247.01.T01:three_prime_UTR 30.0%
!! AGTTTTGTATGAAGTGTAGT+GGG - Chr8:70991088-70991107 MsG0880046247.01.T01:intron 30.0%
!! TTAACATTTCTGTTTCTGCA+GGG - Chr8:70991948-70991967 MsG0880046247.01.T01:intron 30.0%
!! TTTAACATTTCTGTTTCTGC+AGG - Chr8:70991947-70991966 MsG0880046247.01.T01:intron 30.0%
!!! TAGTTTTGTATGAAGTGTAG+TGG - Chr8:70991087-70991106 MsG0880046247.01.T01:intron 30.0%
!!! TTGTGATCAAGTATTTTAGC+AGG - Chr8:70991898-70991917 MsG0880046247.01.T01:intron 30.0%
AAACACTACGGTTCAATAAG+GGG + Chr8:70992584-70992603 None:intergenic 35.0%
AACATACATGTGCAGCAATT+GGG + Chr8:70990637-70990656 None:intergenic 35.0%
ATCATATATGTGCTGCAACT+GGG + Chr8:70990579-70990598 None:intergenic 35.0%
ATGGTACCAAATTCTTCCTT+CGG - Chr8:70989918-70989937 MsG0880046247.01.T01:three_prime_UTR 35.0%
ATGTGATGATTCTCTTGATG+TGG - Chr8:70991682-70991701 MsG0880046247.01.T01:intron 35.0%
ATTTGGTACCATGTAATCAG+TGG + Chr8:70989910-70989929 None:intergenic 35.0%
CAAAAACCGAAGGAAGAATT+TGG + Chr8:70989927-70989946 None:intergenic 35.0%
CAACTATTATGTGCAGCAAT+TGG + Chr8:70990525-70990544 None:intergenic 35.0%
GACTGTAAGAAACAAAAAGC+AGG + Chr8:70992493-70992512 None:intergenic 35.0%
GATATTATTGTTGAGTCCAC+CGG - Chr8:70990390-70990409 MsG0880046247.01.T01:intron 35.0%
GCTAGGAATGATGTTAAATG+AGG + Chr8:70991589-70991608 None:intergenic 35.0%
GTTAACACCAACAACAAACA+TGG + Chr8:70991190-70991209 None:intergenic 35.0%
GTTGATATCTGAATCCTAGT+TGG - Chr8:70992304-70992323 MsG0880046247.01.T01:intron 35.0%
TTCTTCAATAGCAGCTATAC+TGG - Chr8:70990803-70990822 MsG0880046247.01.T01:CDS 35.0%
TTGAGCAACCAAAAACACTA+CGG + Chr8:70992596-70992615 None:intergenic 35.0%
TTGGAGATGATATCAAACTC+TGG + Chr8:70991228-70991247 None:intergenic 35.0%
! ATGTAATCAGTGGTGATGAA+AGG + Chr8:70989900-70989919 None:intergenic 35.0%
! TTTCATCACCACTGATTACA+TGG - Chr8:70989899-70989918 MsG0880046247.01.T01:three_prime_UTR 35.0%
!! AGCAGCTTTGATTTGATCAT+AGG + Chr8:70991845-70991864 None:intergenic 35.0%
!! AGCTTTGATTTGATCATAGG+TGG + Chr8:70991842-70991861 None:intergenic 35.0%
!! TTTGATTTGATCATAGGTGG+CGG + Chr8:70991839-70991858 None:intergenic 35.0%
ACCACTGTTCATTCTATCAC+TGG - Chr8:70991418-70991437 MsG0880046247.01.T01:intron 40.0%
ACCAGTGATAGAATGAACAG+TGG + Chr8:70991422-70991441 None:intergenic 40.0%
ACTATATCACAACTGCGTAG+CGG - Chr8:70990924-70990943 MsG0880046247.01.T01:intron 40.0%
AGTGTATCGCAGAACAATAG+TGG + Chr8:70990865-70990884 None:intergenic 40.0%
ATTTGGAAGAATCGGACGTT+TGG - Chr8:70989821-70989840 MsG0880046247.01.T01:three_prime_UTR 40.0%
CAACATACATGTGCAGCAAT+TGG + Chr8:70990638-70990657 None:intergenic 40.0%
CATCATATATGTGCTGCAAC+TGG + Chr8:70990580-70990599 None:intergenic 40.0%
CATGGCGTATATGTGAAACT+TGG + Chr8:70992693-70992712 None:intergenic 40.0%
CCTGGTATCACCAATAAAGT+CGG + Chr8:70992034-70992053 None:intergenic 40.0%
CTGACAGGATTTGGAAGAAT+CGG - Chr8:70989813-70989832 MsG0880046247.01.T01:three_prime_UTR 40.0%
CTGTTCATTCTATCACTGGT+AGG - Chr8:70991422-70991441 MsG0880046247.01.T01:intron 40.0%
GAATGGAAAGTTGACTGGAA+TGG - Chr8:70991753-70991772 MsG0880046247.01.T01:intron 40.0%
GACAGATTTGGCATTGTTGA+GGG - Chr8:70991388-70991407 MsG0880046247.01.T01:CDS 40.0%
GCCAATTTATAGCACTACCA+CGG + Chr8:70992471-70992490 None:intergenic 40.0%
GCTCATAATACCTTAGCAAG+TGG + Chr8:70991279-70991298 None:intergenic 40.0%
GTAACAGTTATGGCCTCATA+CGG + Chr8:70991340-70991359 None:intergenic 40.0%
GTCAACTTTCCATTCAAAGC+AGG + Chr8:70991748-70991767 None:intergenic 40.0%
TAGTGCTAGTGAGTAACTCT+TGG - Chr8:70991447-70991466 MsG0880046247.01.T01:intron 40.0%
TCTTGGTATGACAACGAGTT+GGG - Chr8:70992242-70992261 MsG0880046247.01.T01:intron 40.0%
TGACAGATTTGGCATTGTTG+AGG - Chr8:70991387-70991406 MsG0880046247.01.T01:CDS 40.0%
TTGTCACATAGCTGCTATAG+TGG - Chr8:70990900-70990919 MsG0880046247.01.T01:intron 40.0%
TTTAAGCTGTTACATTGCCG+TGG - Chr8:70992451-70992470 MsG0880046247.01.T01:CDS 40.0%
TTTCAGTCTGACCTTTCGTA+TGG - Chr8:70992275-70992294 MsG0880046247.01.T01:intron 40.0%
! AAAGTGCTTCCTGCTTTGAA+TGG - Chr8:70991736-70991755 MsG0880046247.01.T01:intron 40.0%
! ATTTAAGGCAATTCCTGCCT+TGG + Chr8:70992201-70992220 None:intergenic 40.0%
! GCTTTGAATGGAAAGTTGAC+TGG - Chr8:70991748-70991767 MsG0880046247.01.T01:intron 40.0%
! GTTTTGCAATGTGAACGATG+AGG + Chr8:70992428-70992447 None:intergenic 40.0%
!! GACTCTAAAACCCTTCTCTT+CGG - Chr8:70990091-70990110 MsG0880046247.01.T01:three_prime_UTR 40.0%
!! TGTTGTTGGTGTTAACGAGA+AGG - Chr8:70991194-70991213 MsG0880046247.01.T01:intron 40.0%
AACATCATTCCTAGCAGCAC+TGG - Chr8:70991594-70991613 MsG0880046247.01.T01:intron 45.0%
ACAACTGAGACATCCACAGT+TGG + Chr8:70991790-70991809 None:intergenic 45.0%
ATACCTTAGCAAGTGGTGCA+AGG + Chr8:70991272-70991291 None:intergenic 45.0%
ATGACAGTGTTCACGGACAA+TGG - Chr8:70990044-70990063 MsG0880046247.01.T01:three_prime_UTR 45.0%
CAAAGCTGCTGCTCATTTGA+AGG - Chr8:70990431-70990450 MsG0880046247.01.T01:intron 45.0%
CAACCATTGTTGTCAATCGC+AGG + Chr8:70990978-70990997 None:intergenic 45.0%
CAACTGAGACATCCACAGTT+GGG + Chr8:70991789-70991808 None:intergenic 45.0%
CAGTAACTGTCTTTGCTCAC+AGG - Chr8:70990122-70990141 MsG0880046247.01.T01:CDS 45.0%
CAGTTGTTGACCTTACAGTG+AGG - Chr8:70991803-70991822 MsG0880046247.01.T01:intron 45.0%
CATCATTTCTGCCCCTAGTA+AGG - Chr8:70991158-70991177 MsG0880046247.01.T01:CDS 45.0%
CCAAGACAACTCGTTGCTTA+TGG + Chr8:70992621-70992640 None:intergenic 45.0%
CCATAAGCAACGAGTTGTCT+TGG - Chr8:70992618-70992637 MsG0880046247.01.T01:intron 45.0%
CCTCATACGGTAAACCAACA+TGG + Chr8:70991327-70991346 None:intergenic 45.0%
CTACCTGCGATTGACAACAA+TGG - Chr8:70990972-70990991 MsG0880046247.01.T01:CDS 45.0%
CTCTTGGTATGACAACGAGT+TGG - Chr8:70992241-70992260 MsG0880046247.01.T01:intron 45.0%
CTGTGAGCAAAGACAGTTAC+TGG + Chr8:70990124-70990143 None:intergenic 45.0%
GGCAACTTGAAAGGAATCCT+TGG - Chr8:70991982-70992001 MsG0880046247.01.T01:intron 45.0%
GGCAGAAATGATGACCTTCT+TGG + Chr8:70991151-70991170 None:intergenic 45.0%
GTCAAGCATCTTTGATGCCA+AGG - Chr8:70992181-70992200 MsG0880046247.01.T01:CDS 45.0%
GTCCTTGTCGGTAAAAACAC+CGG + Chr8:70990412-70990431 None:intergenic 45.0%
TCGCAGGTAGCTGAAAATAG+CGG + Chr8:70990962-70990981 None:intergenic 45.0%
TCTGTGTCTTACTAGGCTGT+TGG - Chr8:70991712-70991731 MsG0880046247.01.T01:intron 45.0%
! AATTTTCTGCAGTACCCGTG+TGG - Chr8:70992398-70992417 MsG0880046247.01.T01:intron 45.0%
! ATGACAACGAGTTGGGTTAC+AGG - Chr8:70992249-70992268 MsG0880046247.01.T01:intron 45.0%
! CCGACTTTATTGGTGATACC+AGG - Chr8:70992031-70992050 MsG0880046247.01.T01:intron 45.0%
! GCCGTGGTAGTGCTATAAAT+TGG - Chr8:70992467-70992486 MsG0880046247.01.T01:CDS 45.0%
!! AACATGGGAGCATCCTTACT+AGG + Chr8:70991174-70991193 None:intergenic 45.0%
!! ACATGGGAGCATCCTTACTA+GGG + Chr8:70991173-70991192 None:intergenic 45.0%
!! ACATTTCTGTTTCTGCAGGG+AGG - Chr8:70991951-70991970 MsG0880046247.01.T01:intron 45.0%
!! CCATGTTGGTTTACCGTATG+AGG - Chr8:70991324-70991343 MsG0880046247.01.T01:CDS 45.0%
!! GATGCTCCCATGTTTGTTGT+TGG - Chr8:70991180-70991199 MsG0880046247.01.T01:intron 45.0%
!! GATTCCTTTCAAGTTGCCCT+CGG + Chr8:70991980-70991999 None:intergenic 45.0%
!! GTCGTCTCTACCGACTTTAT+TGG - Chr8:70992021-70992040 MsG0880046247.01.T01:intron 45.0%
AACGATGAGGTCAACCACAC+GGG + Chr8:70992415-70992434 None:intergenic 50.0%
AGACATCCACAGTTGGGACA+CGG + Chr8:70991783-70991802 None:intergenic 50.0%
AGCATCTTTGATGCCAAGGC+AGG - Chr8:70992185-70992204 MsG0880046247.01.T01:CDS 50.0%
AGGAATCCTTGGTTACACCG+AGG - Chr8:70991993-70992012 MsG0880046247.01.T01:intron 50.0%
ATGGCCCATCAACAGTCTTC+TGG + Chr8:70991536-70991555 None:intergenic 50.0%
CCACCCAGAAGACTGTTGAT+GGG - Chr8:70991529-70991548 MsG0880046247.01.T01:intron 50.0%
CTTGTCGGTAAAAACACCGG+TGG + Chr8:70990409-70990428 None:intergenic 50.0%
GAACCCAGAAGAGATCCCAT+GGG - Chr8:70990353-70990372 MsG0880046247.01.T01:CDS 50.0%
GAACGATGAGGTCAACCACA+CGG + Chr8:70992416-70992435 None:intergenic 50.0%
GCTATGCTGCTATTGCGTAG+CGG - Chr8:70990827-70990846 MsG0880046247.01.T01:intron 50.0%
GGCATCAAAGATGCTTGACC+TGG + Chr8:70992180-70992199 None:intergenic 50.0%
TAGCCCATGGGATCTCTTCT+GGG + Chr8:70990359-70990378 None:intergenic 50.0%
TCTTCCACCTCTCCAGTCTT+TGG + Chr8:70991562-70991581 None:intergenic 50.0%
TGGCCCATCAACAGTCTTCT+GGG + Chr8:70991535-70991554 None:intergenic 50.0%
TGGCTTCTGACCGAAGAGAA+GGG + Chr8:70990104-70990123 None:intergenic 50.0%
! AAGGGGCAAGCTTCAAGTTC+AGG + Chr8:70992567-70992586 None:intergenic 50.0%
! AATCTAGGGTGGTGCCAAGA+AGG - Chr8:70991134-70991153 MsG0880046247.01.T01:CDS 50.0%
! AGCAGCAGCTTTGTCCTTGT+CGG + Chr8:70990424-70990443 None:intergenic 50.0%
! CTATTAGCCTAGCAGCCGTT+AGG - Chr8:70992512-70992531 MsG0880046247.01.T01:CDS 50.0%
!! CACCGGTGTTTTTACCGACA+AGG - Chr8:70990407-70990426 MsG0880046247.01.T01:intron 50.0%
!! CAGTCTAGAAGTGTTCACGC+TGG - Chr8:70992073-70992092 MsG0880046247.01.T01:intron 50.0%
!! CATGGGAGCATCCTTACTAG+GGG + Chr8:70991172-70991191 None:intergenic 50.0%
!! GTTGGTAGTGCAGCTAGCAT+TGG + Chr8:70991247-70991266 None:intergenic 50.0%
!! TCTAGAAGTGTTCACGCTGG+TGG - Chr8:70992076-70992095 MsG0880046247.01.T01:intron 50.0%
!! TGCTATTGCGTAGCGGACTT+TGG - Chr8:70990834-70990853 MsG0880046247.01.T01:intron 50.0%
AAAGAGGCCTAACGGCTGCT+AGG + Chr8:70992522-70992541 None:intergenic 55.0%
AGCAAGTGGTGCAAGGCAGT+TGG + Chr8:70991265-70991284 None:intergenic 55.0%
ATGGGCCATCAGCCAAAGAC+TGG - Chr8:70991547-70991566 MsG0880046247.01.T01:intron 55.0%
CAGTCTTCTGGGTGGCTGAT+TGG + Chr8:70991524-70991543 None:intergenic 55.0%
CCATCAGCCAAAGACTGGAG+AGG - Chr8:70991552-70991571 MsG0880046247.01.T01:intron 55.0%
CCCATCAACAGTCTTCTGGG+TGG + Chr8:70991532-70991551 None:intergenic 55.0%
CCTCTCCAGTCTTTGGCTGA+TGG + Chr8:70991555-70991574 None:intergenic 55.0%
CCTTACAGTGAGGCTCGAGA+AGG - Chr8:70991813-70991832 MsG0880046247.01.T01:intron 55.0%
CCTTCTCGAGCCTCACTGTA+AGG + Chr8:70991816-70991835 None:intergenic 55.0%
CTAGCCCATGGGATCTCTTC+TGG + Chr8:70990360-70990379 None:intergenic 55.0%
CTGGCTTCTGACCGAAGAGA+AGG + Chr8:70990105-70990124 None:intergenic 55.0%
GAGTCCGAGGGCAACTTGAA+AGG - Chr8:70991973-70991992 MsG0880046247.01.T01:intron 55.0%
GCCACCCAGAAGACTGTTGA+TGG - Chr8:70991528-70991547 MsG0880046247.01.T01:intron 55.0%
GGAACCCAGAAGAGATCCCA+TGG - Chr8:70990352-70990371 MsG0880046247.01.T01:CDS 55.0%
GGTAGAGACGACATCGTCCT+CGG + Chr8:70992013-70992032 None:intergenic 55.0%
TCAGCCAAAGACTGGAGAGG+TGG - Chr8:70991555-70991574 MsG0880046247.01.T01:intron 55.0%
! CATCGTCCTCGGTGTAACCA+AGG + Chr8:70992002-70992021 None:intergenic 55.0%
! CTGCCTTGCACCACTTGCTA+AGG - Chr8:70991266-70991285 MsG0880046247.01.T01:intron 55.0%
! TTAGCAGCTCCAGTGCTGCT+AGG + Chr8:70991606-70991625 None:intergenic 55.0%
CAGCACCAGTGCTAGCCCAT+GGG + Chr8:70990371-70990390 None:intergenic 60.0%
GGCATTCCGTGTCCCAACTG+TGG - Chr8:70991774-70991793 MsG0880046247.01.T01:intron 60.0%
TCAGCACCAGTGCTAGCCCA+TGG + Chr8:70990372-70990391 None:intergenic 60.0%
TTCTGCAGGGAGGAGTCCGA+GGG - Chr8:70991961-70991980 MsG0880046247.01.T01:intron 60.0%
TTTCTGCAGGGAGGAGTCCG+AGG - Chr8:70991960-70991979 MsG0880046247.01.T01:intron 60.0%
!! GAGATCCCATGGGCTAGCAC+TGG - Chr8:70990363-70990382 MsG0880046247.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 70989813 70992758 70989813 ID=MsG0880046247.01;Name=MsG0880046247.01
Chr8 mRNA 70989813 70992758 70989813 ID=MsG0880046247.01.T01;Parent=MsG0880046247.01;Name=MsG0880046247.01.T01;_AED=0.33;_eAED=0.34;_QI=0|0.88|0.8|1|0.88|0.9|10|303|335
Chr8 exon 70989813 70990161 70989813 ID=MsG0880046247.01.T01:exon:15405;Parent=MsG0880046247.01.T01
Chr8 exon 70990301 70990390 70990301 ID=MsG0880046247.01.T01:exon:15404;Parent=MsG0880046247.01.T01
Chr8 exon 70990519 70990602 70990519 ID=MsG0880046247.01.T01:exon:15403;Parent=MsG0880046247.01.T01
Chr8 exon 70990702 70990844 70990702 ID=MsG0880046247.01.T01:exon:15402;Parent=MsG0880046247.01.T01
Chr8 exon 70990945 70991042 70990945 ID=MsG0880046247.01.T01:exon:15401;Parent=MsG0880046247.01.T01
Chr8 exon 70991117 70991192 70991117 ID=MsG0880046247.01.T01:exon:15400;Parent=MsG0880046247.01.T01
Chr8 exon 70991284 70991430 70991284 ID=MsG0880046247.01.T01:exon:15399;Parent=MsG0880046247.01.T01
Chr8 exon 70992119 70992218 70992119 ID=MsG0880046247.01.T01:exon:15398;Parent=MsG0880046247.01.T01
Chr8 exon 70992428 70992543 70992428 ID=MsG0880046247.01.T01:exon:15397;Parent=MsG0880046247.01.T01
Chr8 exon 70992651 70992758 70992651 ID=MsG0880046247.01.T01:exon:15396;Parent=MsG0880046247.01.T01
Chr8 CDS 70992651 70992758 70992651 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70992428 70992543 70992428 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70992119 70992218 70992119 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70991284 70991430 70991284 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70991117 70991192 70991117 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70990945 70991042 70990945 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70990702 70990844 70990702 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70990519 70990602 70990519 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70990301 70990390 70990301 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 CDS 70990116 70990161 70990116 ID=MsG0880046247.01.T01:cds;Parent=MsG0880046247.01.T01
Chr8 three_prime_UTR 70989813 70990115 70989813 ID=MsG0880046247.01.T01:three_prime_utr;Parent=MsG0880046247.01.T01
Gene Sequence

>MsG0880046247.01.T01

CTGACAGGATTTGGAAGAATCGGACGTTTGGTTGCTAGAGTTGCTTTGAAGAGAGATGATGTTGAACTCGTTGCTGTTAACGATCCTTTCATCACCACTGATTACATGACATACATGTTTAAGTATGACAGTGTTCACGGACAATGGAAAAACGATGAACTCACTGTTAAAGACTCTAAAACCCTTCTCTTCGGTCAGAAGCCAGTAACTGTCTTTGCTCACAGGAACCCAGAAGAGATCCCATGGGCTAGCACTGGTGCTGATATTATTGTTGAGTCCACCGGTGTTTTTACCGACAAGGACAAAGCTGCTGCTCATTTGAAGGGTGGTGCCAAGAAGGTCATCATTTCTGCCCCTAGTAAGGATGCTCCCATGTTTGTTGTTGGTGTTAACGAGAAGGAATACAAGCCAGAGTTTGATATCATCTCCAATGCTAGCTGCACTACCAACTGCCTTGCACCACTTGCTAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTTTGATGACCACTGTTCATTCTATCACTGGTAGGTTTAGTGCTACCACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCCTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCTAAAGCTGTTGGCAAAGTGCTTCCTGCTTTGAATGGAAAGTTGACTGGAATGGCATTCCGTGTCCCAACTGTGGATGTCTCAGTTGTTGACCTTACAGTGAGGCTCGAGAAGGCCGCCACCTATGATCAAATCAAAGCTGCTATCAAGGAGGAGTCCGAGGGCAACTTGAAAGGAATCCTTGGTTACACCGAGGACGATGTCGTCTCTACCGACTTTATTGGTGATACCAGGTCAAGCATCTTTGATGCCAAGGCAGGAATTGCCTTAAATGACAATTTTGTTAAGCTTGTCTCTTGGTATGACAACGAGTTGGGTTACAGTACCCGTGTGGTTGACCTCATCGTTCACATTGCAAAACAACTTTAA
Protein sequence

>MsG0880046247.01.T01

LTGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSKTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPEFDIISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITGRFSATTQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYDQIKAAIKEESEGNLKGILGYTEDDVVSTDFIGDTRSSIFDAKAGIALNDNFVKLVSWYDNELGYSTRVVDLIVHIAKQL*