AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016548.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016548.01.T01 MTR_3g491870 56.207 290 50 6 1 222 77 357 1.66e-67 211
MsG0380016548.01.T01 MTR_2g048680 42.529 87 47 2 134 218 133 218 6.17e-14 68.9
MsG0380016548.01.T01 MTR_2g048680 42.529 87 47 2 134 218 213 298 3.01e-13 67.8
MsG0380016548.01.T01 MTR_5g043640 47.761 67 35 0 135 201 156 222 8.49e-13 65.9
MsG0380016548.01.T01 MTR_5g043640 44.286 70 39 0 134 203 89 158 1.84e-11 62.0
MsG0380016548.01.T01 MTR_5g043640 36.250 80 48 1 135 211 123 202 5.94e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016548.01.T01 AT4G27780 40.141 284 92 6 1 216 74 347 2.07e-45 154
MsG0380016548.01.T01 AT5G53470 40.780 282 92 6 1 220 68 336 1.15e-36 131
MsG0380016548.01.T01 AT4G27780 68.519 108 25 1 1 108 74 172 7.30e-34 122
MsG0380016548.01.T01 AT4G24230 38.462 91 44 3 18 108 218 296 5.67e-13 67.4
MsG0380016548.01.T01 AT4G24230 38.462 91 44 3 18 108 218 296 5.97e-13 67.4
MsG0380016548.01.T01 AT4G24230 39.130 92 42 4 18 108 218 296 7.04e-13 67.0
MsG0380016548.01.T01 AT4G24230 39.130 92 42 4 18 108 218 296 7.04e-13 67.0
MsG0380016548.01.T01 AT4G24230 39.130 92 42 4 18 108 218 296 7.04e-13 67.0
MsG0380016548.01.T01 AT4G24230 39.130 92 42 4 18 108 218 296 7.04e-13 67.0
MsG0380016548.01.T01 AT2G03430 47.059 68 36 0 134 201 82 149 1.34e-11 62.4
MsG0380016548.01.T01 AT5G66055 41.333 75 44 0 134 208 325 399 5.48e-11 62.0

Find 90 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACGGTTCATCTCATTCT+TGG 0.171559 3:-85016434 None:intergenic
TAGGCAAGCGTGGCAGAAAT+TGG 0.241228 3:-85014849 MsG0380016548.01.T01:CDS
TTCGGCTTCGGGACGGTGTC+CGG 0.281477 3:+85016028 None:intergenic
ATTATGTATGTTGTTGCTTC+TGG 0.294711 3:-85011525 MsG0380016548.01.T01:three_prime_UTR
GATGTTCAGCTTCAGCTTTA+TGG 0.297104 3:-85015825 MsG0380016548.01.T01:CDS
ATGTTCAGCTTCAGCTTTAT+GGG 0.299378 3:-85015824 MsG0380016548.01.T01:CDS
AAAATGACGGGCGTGCTAAA+TGG 0.306914 3:-85015747 MsG0380016548.01.T01:intron
CCAGCAGCTCTGTGACATTA+AGG 0.334693 3:+85012005 None:intergenic
ACGTACATCCTGAAGGGATT+TGG 0.335145 3:+85011487 None:intergenic
ACCGACTCAGCTTCGGCTTC+GGG 0.342493 3:+85016017 None:intergenic
CGTACATCCTGAAGGGATTT+GGG 0.364508 3:+85011488 None:intergenic
TTGGCTTGATGGTGCACCTT+TGG 0.364530 3:-85014766 MsG0380016548.01.T01:intron
AACCGACTCAGCTTCGGCTT+CGG 0.381980 3:+85016016 None:intergenic
TTGCTGCTGCCGCCGCGGAC+CGG 0.402492 3:-85015869 MsG0380016548.01.T01:CDS
ATGATGATTATGATGATGAT+TGG 0.403312 3:-85015947 MsG0380016548.01.T01:CDS
ACTATATCTACTTGGCTTGA+TGG 0.413120 3:-85014777 MsG0380016548.01.T01:CDS
AGCCGAAGCTGAGTCGGTTA+TGG 0.416065 3:-85016012 MsG0380016548.01.T01:exon
TCTTCCTCATGCTGCATAAA+CGG 0.428588 3:+85011564 None:intergenic
TAGTGTATACACCAAGAGTA+AGG 0.442463 3:+85011438 None:intergenic
CAGCCCAGTGTAGCGGTGTC+CGG 0.452667 3:+85012041 None:intergenic
TTGTGAGGAAATTTCGATCA+AGG 0.452735 3:+85016402 None:intergenic
ATCCTTGCCCAAATCCCTTC+AGG 0.454747 3:-85011495 MsG0380016548.01.T01:three_prime_UTR
TCGGCTTCGGGACGGTGTCC+GGG 0.456211 3:+85016029 None:intergenic
AAATGGGTGAATGGCATGAT+TGG 0.457260 3:-85016222 MsG0380016548.01.T01:five_prime_UTR
CGCGGACCGGCTTTCGCAGA+AGG 0.462676 3:-85015856 MsG0380016548.01.T01:CDS
TGCCATCATTGTCTTCTGAA+TGG 0.466803 3:+85011619 None:intergenic
TCACAGAGCTGCTGGTTGGC+AGG 0.467967 3:-85011997 MsG0380016548.01.T01:CDS
AAGGCCGGACACCGCTACAC+TGG 0.472472 3:-85012045 MsG0380016548.01.T01:CDS
TGATGATTATGATGATGATT+GGG 0.475622 3:-85015946 MsG0380016548.01.T01:CDS
CCTTAATGTCACAGAGCTGC+TGG 0.483735 3:-85012005 MsG0380016548.01.T01:CDS
AGGTGTAGACTACAGTGAAA+AGG 0.487835 3:+85011412 None:intergenic
ATCAGAAACGAAAGCCTTGA+CGG 0.497891 3:-85015975 MsG0380016548.01.T01:CDS
GGTGTAGACTACAGTGAAAA+GGG 0.502764 3:+85011413 None:intergenic
GCTTGCCTACAGAAAGTTGA+AGG 0.509607 3:+85014863 None:intergenic
CAATTGTCCTCAGGATCCTC+AGG 0.510714 3:+85014816 None:intergenic
AGGCAAGCGTGGCAGAAATT+GGG 0.512730 3:-85014848 MsG0380016548.01.T01:CDS
TACTGAAGGTCCTTGTAGTA+CGG 0.514723 3:-85015787 MsG0380016548.01.T01:CDS
TAAATACTGTGAAATAACAT+AGG 0.514861 3:+85016293 None:intergenic
CCTATGCACCGCTTAGGTAA+TGG 0.515302 3:-85011392 MsG0380016548.01.T01:three_prime_UTR
AGCCATAACCGACTCAGCTT+CGG 0.524028 3:+85016010 None:intergenic
CTTCACCAAGTATTCAGCTA+TGG 0.524917 3:+85011656 None:intergenic
AGAATCCATAGCTGAATACT+TGG 0.526526 3:-85011661 MsG0380016548.01.T01:CDS
GAAACGAAAGCCTTGACGGT+GGG 0.541890 3:-85015971 MsG0380016548.01.T01:CDS
ACCTTCTCCTCTCAAAATGA+CGG 0.542665 3:-85015760 MsG0380016548.01.T01:CDS
CCTTCTCCTCTCAAAATGAC+GGG 0.543467 3:-85015759 MsG0380016548.01.T01:CDS
CAACTTTCTGTAGGCAAGCG+TGG 0.544482 3:-85014859 MsG0380016548.01.T01:CDS
GACACCGCTACACTGGGCTG+TGG 0.545393 3:-85012038 MsG0380016548.01.T01:CDS
CTGCGAAAGCCGGTCCGCGG+CGG 0.545771 3:+85015860 None:intergenic
TGATGATGATTGGGAAGGTG+TGG 0.546547 3:-85015937 MsG0380016548.01.T01:CDS
TATACCCTTCAACTTTCTGT+AGG 0.550243 3:-85014868 MsG0380016548.01.T01:CDS
GACGACGTCGTTTATGATCC+CGG 0.551665 3:-85016047 MsG0380016548.01.T01:five_prime_UTR
CCATTACCTAAGCGGTGCAT+AGG 0.551677 3:+85011392 None:intergenic
GAAGGTTGAGCCGTACTACA+AGG 0.554732 3:+85015777 None:intergenic
CTACACTGGGCTGTGGATCG+TGG 0.555327 3:-85012031 MsG0380016548.01.T01:CDS
AGGCCGGACACCGCTACACT+GGG 0.560736 3:-85012044 MsG0380016548.01.T01:CDS
TCGACACCTTCTGCGAAAGC+CGG 0.563972 3:+85015850 None:intergenic
AGTCAATGTCAATTGTCCTC+AGG 0.565442 3:+85014807 None:intergenic
TGTGTGGAACTATATCTACT+TGG 0.574356 3:-85014785 MsG0380016548.01.T01:CDS
TCTACACCTATGCACCGCTT+AGG 0.574708 3:-85011398 MsG0380016548.01.T01:three_prime_UTR
ATCGTGTGAAACGACGGCGT+TGG 0.582169 3:+85016082 None:intergenic
TGTATCATCGTGTGAAACGA+CGG 0.586740 3:+85016076 None:intergenic
TATGTGCAGACAGTGAAGGC+CGG 0.586771 3:-85012060 MsG0380016548.01.T01:intron
TCCCGAAGCCGAAGCTGAGT+CGG 0.589483 3:-85016018 MsG0380016548.01.T01:five_prime_UTR
AAACGAAAGCCTTGACGGTG+GGG 0.590643 3:-85015970 MsG0380016548.01.T01:CDS
ATCCATTCAGAAGACAATGA+TGG 0.596681 3:-85011621 MsG0380016548.01.T01:CDS
TTCATTAACCATTACCTAAG+CGG 0.599741 3:+85011384 None:intergenic
TATGGACACGTACATCCTGA+AGG 0.600294 3:+85011480 None:intergenic
AATTGGGTGCTATGCTCCTG+AGG 0.600394 3:-85014832 MsG0380016548.01.T01:CDS
ATCCTGAAGGGATTTGGGCA+AGG 0.600614 3:+85011493 None:intergenic
ACTCAGCTTCGGCTTCGGGA+CGG 0.601526 3:+85016021 None:intergenic
CACGTAACAGCGTAATGCAG+TGG 0.604125 3:+85011690 None:intergenic
GTGACATCTGTAGTTCTAAG+TGG 0.612750 3:-85011587 MsG0380016548.01.T01:CDS
CTTCTGCGAAAGCCGGTCCG+CGG 0.613659 3:+85015857 None:intergenic
GTTGTTGAATGAAACGACGA+TGG 0.619984 3:+85016136 None:intergenic
AATGTCACAGAGCTGCTGGT+TGG 0.620200 3:-85012001 MsG0380016548.01.T01:CDS
TTGTATAAGATTGCTACTGA+AGG 0.622050 3:-85015801 MsG0380016548.01.T01:CDS
AATCATCATCCCCACCGTCA+AGG 0.622738 3:+85015961 None:intergenic
CTATGCTCCTGAGGATCCTG+AGG 0.623029 3:-85014823 MsG0380016548.01.T01:CDS
GAGTCGGTTATGGCTGAGCA+AGG 0.627643 3:-85016002 MsG0380016548.01.T01:exon
AGTGTATACACCAAGAGTAA+GGG 0.628804 3:+85011439 None:intergenic
GAATGCTGATGTAAATGCCA+AGG 0.631032 3:-85011975 MsG0380016548.01.T01:intron
CGATCCACAGCCCAGTGTAG+CGG 0.638544 3:+85012034 None:intergenic
GGTAAGAGAAGATTAAACCG+AGG 0.648737 3:+85016177 None:intergenic
ATGGACACGTACATCCTGAA+GGG 0.663378 3:+85011481 None:intergenic
GGAGAGTACTGAATTAGATG+AGG 0.670681 3:-85015916 MsG0380016548.01.T01:CDS
CTTGCCTACAGAAAGTTGAA+GGG 0.674478 3:+85014864 None:intergenic
GATTATGATGATGATTGGGA+AGG 0.681559 3:-85015942 MsG0380016548.01.T01:CDS
GACAATTGACATTGACTGTG+TGG 0.685540 3:-85014801 MsG0380016548.01.T01:CDS
AGAAACGAAAGCCTTGACGG+TGG 0.689691 3:-85015972 MsG0380016548.01.T01:CDS
GTGGCCGTTTATGCAGCATG+AGG 0.693675 3:-85011568 MsG0380016548.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATAGTACTAATT+AGG - Chr3:85011431-85011450 MsG0380016548.01.T01:three_prime_UTR 10.0%
!! AAAAAAAATAGTACTAATTA+GGG - Chr3:85011432-85011451 MsG0380016548.01.T01:three_prime_UTR 10.0%
!!! TAAGAAAATTATTTTTGTTT+AGG + Chr3:85011464-85011483 None:intergenic 10.0%
!! AATGACATTATTTAAATGTA+CGG - Chr3:85014502-85014521 MsG0380016548.01.T01:intron 15.0%
!! AGAAAAAAAATCAAGTTATA+TGG + Chr3:85016321-85016340 None:intergenic 15.0%
!!! AACATAAACTTAAATTTTAG+CGG - Chr3:85014911-85014930 MsG0380016548.01.T01:intron 15.0%
!!! TTATTTTATCTTAAGTCTTT+TGG - Chr3:85014822-85014841 MsG0380016548.01.T01:CDS 15.0%
!!! TTTTTTTTTTTTTTGTCCTT+GGG - Chr3:85012225-85012244 MsG0380016548.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTTTGTCCT+TGG - Chr3:85012224-85012243 MsG0380016548.01.T01:intron 15.0%
!! AAACTAAGAAAAACTATAAG+AGG - Chr3:85012525-85012544 MsG0380016548.01.T01:intron 20.0%
!! AATACAAATACATCCAAAAT+AGG + Chr3:85012275-85012294 None:intergenic 20.0%
!! ATAAATTCATAACCAATTAG+TGG + Chr3:85013441-85013460 None:intergenic 20.0%
!! ATAGGTCTTTATATATTACA+CGG - Chr3:85013685-85013704 MsG0380016548.01.T01:intron 20.0%
!! GATCATTTGTGTAAATAAAA+AGG + Chr3:85014369-85014388 None:intergenic 20.0%
!! TAAATACTGTGAAATAACAT+AGG + Chr3:85011490-85011509 None:intergenic 20.0%
!! TTATCTTCCTTTATAGAAAA+TGG - Chr3:85014644-85014663 MsG0380016548.01.T01:intron 20.0%
!! TTTCAAAGTTAAAACTAAGA+AGG + Chr3:85013954-85013973 None:intergenic 20.0%
!!! AGTCTTTTATTTTGAGAAAT+AGG - Chr3:85012758-85012777 MsG0380016548.01.T01:intron 20.0%
!!! ATATTAATTTGATAAACCTC+TGG + Chr3:85015642-85015661 None:intergenic 20.0%
!!! ATTTTATTGAAGATTTAGAG+AGG - Chr3:85012363-85012382 MsG0380016548.01.T01:intron 20.0%
!!! GCTAATTTTTTATAACTGAA+AGG + Chr3:85015128-85015147 None:intergenic 20.0%
!!! GGTTATTTTTGTTAATGTTT+TGG - Chr3:85012878-85012897 MsG0380016548.01.T01:intron 20.0%
!!! TCACTATTTCTTTCTATAAA+AGG - Chr3:85013133-85013152 MsG0380016548.01.T01:intron 20.0%
!!! TGAATTGCAATATTTTTCTA+GGG - Chr3:85011515-85011534 MsG0380016548.01.T01:three_prime_UTR 20.0%
! AACGCATATTGTTAAAGAAA+AGG + Chr3:85015692-85015711 None:intergenic 25.0%
! AAGAATGCTGAAGATATTTA+TGG + Chr3:85015593-85015612 None:intergenic 25.0%
! AAGTTTCATTCACGAAAAAT+GGG - Chr3:85011542-85011561 MsG0380016548.01.T01:exon 25.0%
! AATAAAAGACTTGTGTATGT+TGG + Chr3:85012749-85012768 None:intergenic 25.0%
! AATATACATATGCTTGTGTT+AGG + Chr3:85014951-85014970 None:intergenic 25.0%
! AGAATGCTGAAGATATTTAT+GGG + Chr3:85015592-85015611 None:intergenic 25.0%
! AGGAGAATGATGTATTTAAA+AGG - Chr3:85013153-85013172 MsG0380016548.01.T01:intron 25.0%
! ATAAAGACCTATCATTGATA+GGG + Chr3:85013677-85013696 None:intergenic 25.0%
! ATAACAAGACAAATTTAGGA+AGG + Chr3:85013895-85013914 None:intergenic 25.0%
! ATAACTGAATTGACATTACA+TGG - Chr3:85015074-85015093 MsG0380016548.01.T01:intron 25.0%
! ATCAAAAGGCAACAATTATT+GGG - Chr3:85014589-85014608 MsG0380016548.01.T01:intron 25.0%
! ATCACTTTCTATCTTCAAAT+AGG + Chr3:85015052-85015071 None:intergenic 25.0%
! CAAAATGCCAATAGTTTAAT+GGG + Chr3:85014421-85014440 None:intergenic 25.0%
! CATATGTATATTTCAGTGTT+TGG - Chr3:85014959-85014978 MsG0380016548.01.T01:intron 25.0%
! CATTTGTGTAAATAAAAAGG+TGG + Chr3:85014366-85014385 None:intergenic 25.0%
! GCACTATTTAAATTAACGTT+TGG - Chr3:85012302-85012321 MsG0380016548.01.T01:intron 25.0%
! GCATATAACAAGACAAATTT+AGG + Chr3:85013899-85013918 None:intergenic 25.0%
! GGGTTAATAGTGTATATATT+TGG - Chr3:85012158-85012177 MsG0380016548.01.T01:intron 25.0%
! TAACAAGACAAATTTAGGAA+GGG + Chr3:85013894-85013913 None:intergenic 25.0%
! TAATGAGTTAGATCGAAATA+TGG - Chr3:85012572-85012591 MsG0380016548.01.T01:intron 25.0%
! TAGAATACGCATAAAATCTT+TGG - Chr3:85014174-85014193 MsG0380016548.01.T01:intron 25.0%
! TATAAAGACCTATCATTGAT+AGG + Chr3:85013678-85013697 None:intergenic 25.0%
! TCTTCAAGTGGTAATTATAA+CGG - Chr3:85013535-85013554 MsG0380016548.01.T01:intron 25.0%
! TGCATAATGTAGTATAGTTT+AGG - Chr3:85015964-85015983 MsG0380016548.01.T01:CDS 25.0%
! TGTAGAAGACAATAAAAGAA+AGG - Chr3:85012103-85012122 MsG0380016548.01.T01:intron 25.0%
! TTTCATTACATCACACTATT+TGG - Chr3:85015526-85015545 MsG0380016548.01.T01:intron 25.0%
!! AAAAATTATTGAGTTGCAGA+AGG + Chr3:85014056-85014075 None:intergenic 25.0%
!! AAGGTACTTTATTAATCAGT+AGG - Chr3:85014467-85014486 MsG0380016548.01.T01:intron 25.0%
!! AATTTGTCTTGTTATATGCT+AGG - Chr3:85013900-85013919 MsG0380016548.01.T01:intron 25.0%
!! ACATTACGCAACAATTTTAA+AGG - Chr3:85012137-85012156 MsG0380016548.01.T01:intron 25.0%
!! ACTATTGGCACTTTAAAAAT+GGG - Chr3:85015279-85015298 MsG0380016548.01.T01:intron 25.0%
!! ATAGATTCTTTAGCCTATTT+TGG - Chr3:85012259-85012278 MsG0380016548.01.T01:intron 25.0%
!! ATAGTATTGAATGAATACCT+TGG + Chr3:85015825-85015844 None:intergenic 25.0%
!! ATCTTCAAATAGGCATTTTT+AGG + Chr3:85015042-85015061 None:intergenic 25.0%
!! ATGATGATTATGATGATGAT+TGG - Chr3:85011833-85011852 MsG0380016548.01.T01:intron 25.0%
!! CACTATTTCTTTCTATACAA+GGG - Chr3:85013077-85013096 MsG0380016548.01.T01:intron 25.0%
!! CATTACGCAACAATTTTAAA+GGG - Chr3:85012138-85012157 MsG0380016548.01.T01:intron 25.0%
!! GCTTCTTTATCTTTTCTTAA+AGG - Chr3:85013826-85013845 MsG0380016548.01.T01:intron 25.0%
!! GTGAATTGCAATATTTTTCT+AGG - Chr3:85011514-85011533 MsG0380016548.01.T01:three_prime_UTR 25.0%
!! TAACTGTTTAGAATGAAAAC+AGG - Chr3:85015897-85015916 MsG0380016548.01.T01:CDS 25.0%
!! TCACTATTTCTTTCTATACA+AGG - Chr3:85013076-85013095 MsG0380016548.01.T01:intron 25.0%
!! TGATGATTATGATGATGATT+GGG - Chr3:85011834-85011853 MsG0380016548.01.T01:intron 25.0%
!! TGGTTTTTGATAGAACATTA+TGG - Chr3:85012592-85012611 MsG0380016548.01.T01:intron 25.0%
!!! AAATCTTTGGTTTGCTTTTA+TGG - Chr3:85014187-85014206 MsG0380016548.01.T01:intron 25.0%
!!! CTGCAACTCAATAATTTTTT+TGG - Chr3:85014057-85014076 MsG0380016548.01.T01:intron 25.0%
!!! GTTTTTTCCCATTAAACTAT+TGG - Chr3:85014411-85014430 MsG0380016548.01.T01:intron 25.0%
!!! TCTGATGTTTTCTTTTTTGA+AGG - Chr3:85016050-85016069 MsG0380016548.01.T01:five_prime_UTR 25.0%
!!! TCTTTTTTGAAGGATAATGA+TGG - Chr3:85016060-85016079 MsG0380016548.01.T01:five_prime_UTR 25.0%
AACAAGACAAATTTAGGAAG+GGG + Chr3:85013893-85013912 None:intergenic 30.0%
ATAAAAAGGTGGTTCAAAAG+AGG + Chr3:85014355-85014374 None:intergenic 30.0%
ATGTAGTATAGTTTAGGCTT+TGG - Chr3:85015970-85015989 MsG0380016548.01.T01:CDS 30.0%
ATGTTTAATGCATTCCTTCA+GGG - Chr3:85015845-85015864 MsG0380016548.01.T01:CDS 30.0%
CAAGTTTCATTCACGAAAAA+TGG - Chr3:85011541-85011560 MsG0380016548.01.T01:exon 30.0%
CATCAAAAGGCAACAATTAT+TGG - Chr3:85014588-85014607 MsG0380016548.01.T01:intron 30.0%
CCAAAATGCCAATAGTTTAA+TGG + Chr3:85014422-85014441 None:intergenic 30.0%
CTGCTATTAAAAACTCATAG+AGG + Chr3:85012202-85012221 None:intergenic 30.0%
GATACACTCAAAGTGATAAT+AGG - Chr3:85013928-85013947 MsG0380016548.01.T01:intron 30.0%
GTCTTTATATATTACACGGT+TGG - Chr3:85013689-85013708 MsG0380016548.01.T01:intron 30.0%
TAAAGACCTATCATTGATAG+GGG + Chr3:85013676-85013695 None:intergenic 30.0%
TAAATTAACGTTTGGATGAG+CGG - Chr3:85012310-85012329 MsG0380016548.01.T01:intron 30.0%
TATGTTTAATGCATTCCTTC+AGG - Chr3:85015844-85015863 MsG0380016548.01.T01:CDS 30.0%
TCGTAGATCTCTACTAATTT+GGG - Chr3:85015462-85015481 MsG0380016548.01.T01:intron 30.0%
TCTATTTGAACTTATACCCA+AGG + Chr3:85012244-85012263 None:intergenic 30.0%
TGAAGGATAATGTATACACT+TGG + Chr3:85014779-85014798 None:intergenic 30.0%
TGATGATATCTTGGTTCATT+GGG + Chr3:85014252-85014271 None:intergenic 30.0%
TGTAGTATAGTTTAGGCTTT+GGG - Chr3:85015971-85015990 MsG0380016548.01.T01:CDS 30.0%
TGTTGAAGACACTAAAGTTA+TGG + Chr3:85015326-85015345 None:intergenic 30.0%
TTACATGGAATTAATCTTGC+TGG - Chr3:85015089-85015108 MsG0380016548.01.T01:intron 30.0%
TTATGTTGTCATACTGAAGT+CGG + Chr3:85014898-85014917 None:intergenic 30.0%
TTCATTAACCATTACCTAAG+CGG + Chr3:85016399-85016418 None:intergenic 30.0%
TTGTATAAGATTGCTACTGA+AGG - Chr3:85011979-85011998 MsG0380016548.01.T01:CDS 30.0%
TTTCAAATTTGAACAGAGCA+AGG - Chr3:85013994-85014013 MsG0380016548.01.T01:intron 30.0%
TTTCTAAGCTTTGCATCATA+GGG - Chr3:85014149-85014168 MsG0380016548.01.T01:intron 30.0%
! AGAAAAACCAGACATCATTT+TGG - Chr3:85013747-85013766 MsG0380016548.01.T01:intron 30.0%
! ATGGCATCCATTTTCTATAA+AGG + Chr3:85014654-85014673 None:intergenic 30.0%
! ATTATGTATGTTGTTGCTTC+TGG - Chr3:85016255-85016274 MsG0380016548.01.T01:five_prime_UTR 30.0%
! CACTATTGGCACTTTAAAAA+TGG - Chr3:85015278-85015297 MsG0380016548.01.T01:intron 30.0%
! CCATTAAACTATTGGCATTT+TGG - Chr3:85014419-85014438 MsG0380016548.01.T01:intron 30.0%
! TCAATTTAGAGCACAAGAAA+CGG + Chr3:85013052-85013071 None:intergenic 30.0%
! TCTTCTTCAATCATTTTCCT+CGG - Chr3:85011586-85011605 MsG0380016548.01.T01:CDS 30.0%
! TGTTTAGAATGAAAACAGGA+TGG - Chr3:85015901-85015920 MsG0380016548.01.T01:CDS 30.0%
! TTAAACTATTGGCATTTTGG+AGG - Chr3:85014422-85014441 MsG0380016548.01.T01:intron 30.0%
! TTTAAATGTACGGAGTACTA+AGG - Chr3:85014512-85014531 MsG0380016548.01.T01:intron 30.0%
! TTTTATGAATGACGAGATTG+AGG + Chr3:85011410-85011429 None:intergenic 30.0%
!!! TTAGTTTTATCAAGCATGCT+TGG + Chr3:85014286-85014305 None:intergenic 30.0%
!!! TTTTTTTTCTCCCTTACTCT+TGG - Chr3:85016331-85016350 MsG0380016548.01.T01:five_prime_UTR 30.0%
AAACAGGATGGAACTTTAGT+TGG - Chr3:85015913-85015932 MsG0380016548.01.T01:CDS 35.0%
AAATGACTGCATGCAATTGT+TGG + Chr3:85012811-85012830 None:intergenic 35.0%
AAGATTTAGAGAGGAAGTTG+GGG - Chr3:85012372-85012391 MsG0380016548.01.T01:intron 35.0%
AAGGAGACAGATTAATGAGA+AGG + Chr3:85014316-85014335 None:intergenic 35.0%
AATATTGCTTTGTGGGTTTC+TGG - Chr3:85014019-85014038 MsG0380016548.01.T01:intron 35.0%
AATTAAGCCAATAGTGCAGA+TGG + Chr3:85015876-85015895 None:intergenic 35.0%
AGAATCCATAGCTGAATACT+TGG - Chr3:85016119-85016138 MsG0380016548.01.T01:five_prime_UTR 35.0%
AGCTTAAGTGAAGAATTAGC+TGG - Chr3:85015145-85015164 MsG0380016548.01.T01:intron 35.0%
AGGAGACAGATTAATGAGAA+GGG + Chr3:85014315-85014334 None:intergenic 35.0%
AGGATAGTCAGATCACTAAA+GGG - Chr3:85012496-85012515 MsG0380016548.01.T01:intron 35.0%
AGTAGTGAGAGTAGATCAAA+TGG - Chr3:85012473-85012492 MsG0380016548.01.T01:intron 35.0%
AGTGGGAGTGAAAGTTAAAA+TGG + Chr3:85015210-85015229 None:intergenic 35.0%
AGTGTATACACCAAGAGTAA+GGG + Chr3:85016344-85016363 None:intergenic 35.0%
ATCCATTCAGAAGACAATGA+TGG - Chr3:85016159-85016178 MsG0380016548.01.T01:five_prime_UTR 35.0%
ATTATGCAACTTATGCAGTG+AGG + Chr3:85015952-85015971 None:intergenic 35.0%
ATTCACGAAAAATGGGTGAA+TGG - Chr3:85011549-85011568 MsG0380016548.01.T01:exon 35.0%
CAAGGACAATATTGCTTTGT+GGG - Chr3:85014012-85014031 MsG0380016548.01.T01:intron 35.0%
CATGTTACCAAAATGATGTC+TGG + Chr3:85013757-85013776 None:intergenic 35.0%
CTACTAAAGTGTATCGAAAG+TGG - Chr3:85014708-85014727 MsG0380016548.01.T01:intron 35.0%
CTCGTAGATCTCTACTAATT+TGG - Chr3:85015461-85015480 MsG0380016548.01.T01:intron 35.0%
CTTTGACAGAGAAGTAAAAC+CGG - Chr3:85013262-85013281 MsG0380016548.01.T01:intron 35.0%
GAACCAAGATATCATCACTT+TGG - Chr3:85014255-85014274 MsG0380016548.01.T01:intron 35.0%
GAAGATTTAGAGAGGAAGTT+GGG - Chr3:85012371-85012390 MsG0380016548.01.T01:intron 35.0%
GCAAAAGATTCAGTCAACAA+AGG + Chr3:85013642-85013661 None:intergenic 35.0%
GCTTAAGTGAAGAATTAGCT+GGG - Chr3:85015146-85015165 MsG0380016548.01.T01:intron 35.0%
GGAGTTTCAGTGAATTTGAA+GGG - Chr3:85014729-85014748 MsG0380016548.01.T01:intron 35.0%
GTAAACAAAGAGCTGAATAC+TGG + Chr3:85013329-85013348 None:intergenic 35.0%
GTATACCACAGATTCACTAT+TGG - Chr3:85015264-85015283 MsG0380016548.01.T01:intron 35.0%
GTGATGATATCTTGGTTCAT+TGG + Chr3:85014253-85014272 None:intergenic 35.0%
GTTTCTAAGCTTTGCATCAT+AGG - Chr3:85014148-85014167 MsG0380016548.01.T01:intron 35.0%
TAGAAAATGGATGCCATTCA+CGG - Chr3:85014657-85014676 MsG0380016548.01.T01:intron 35.0%
TAGATCTCTACTAATTTGGG+AGG - Chr3:85015465-85015484 MsG0380016548.01.T01:intron 35.0%
TAGCACCTATAGTAGAAAGA+TGG - Chr3:85012395-85012414 MsG0380016548.01.T01:intron 35.0%
TAGTGTATACACCAAGAGTA+AGG + Chr3:85016345-85016364 None:intergenic 35.0%
TATACCCTTCAACTTTCTGT+AGG - Chr3:85012912-85012931 MsG0380016548.01.T01:intron 35.0%
TCAAAGAAACAACACGAGTT+GGG + Chr3:85013248-85013267 None:intergenic 35.0%
TCTCTTGCATCTTTGTACTT+AGG - Chr3:85015236-85015255 MsG0380016548.01.T01:intron 35.0%
TGAAGATTTAGAGAGGAAGT+TGG - Chr3:85012370-85012389 MsG0380016548.01.T01:intron 35.0%
TGGAGTTTCAGTGAATTTGA+AGG - Chr3:85014728-85014747 MsG0380016548.01.T01:intron 35.0%
TGTGTGGAACTATATCTACT+TGG - Chr3:85012995-85013014 MsG0380016548.01.T01:intron 35.0%
TGTTAGAAGAGCCAAATCAA+AGG + Chr3:85014218-85014237 None:intergenic 35.0%
TGTTTAATGCATTCCTTCAG+GGG - Chr3:85015846-85015865 MsG0380016548.01.T01:CDS 35.0%
TTAATGGGAAAAAACACACG+TGG + Chr3:85014406-85014425 None:intergenic 35.0%
TTATGGAGAGTCCTTTGATT+TGG - Chr3:85014204-85014223 MsG0380016548.01.T01:intron 35.0%
TTCCACCATCTTTCTACTAT+AGG + Chr3:85012403-85012422 None:intergenic 35.0%
TTCTAAGCTTTGCATCATAG+GGG - Chr3:85014150-85014169 MsG0380016548.01.T01:intron 35.0%
TTGATAGACCTCCTAAGAAT+CGG + Chr3:85013563-85013582 None:intergenic 35.0%
TTGCATCTTTGTACTTAGGA+AGG - Chr3:85015240-85015259 MsG0380016548.01.T01:intron 35.0%
TTGTGAGGAAATTTCGATCA+AGG + Chr3:85011381-85011400 None:intergenic 35.0%
TTTGTTTACGAAGAGGAATG+TGG - Chr3:85013340-85013359 MsG0380016548.01.T01:intron 35.0%
! ACTATATCTACTTGGCTTGA+TGG - Chr3:85013003-85013022 MsG0380016548.01.T01:intron 35.0%
! AGATTGAGGAAGATTTTGTG+AGG + Chr3:85011396-85011415 None:intergenic 35.0%
! ATGTTCAGCTTCAGCTTTAT+GGG - Chr3:85011956-85011975 MsG0380016548.01.T01:intron 35.0%
! ATTTGAGATAGCCAGAATCA+TGG + Chr3:85012716-85012735 None:intergenic 35.0%
! GATTATGATGATGATTGGGA+AGG - Chr3:85011838-85011857 MsG0380016548.01.T01:intron 35.0%
! TCTTGTTATATGCTAGGCTT+TGG - Chr3:85013906-85013925 MsG0380016548.01.T01:intron 35.0%
! TGGATATGAGTTTTGCAAGA+AGG + Chr3:85011627-85011646 None:intergenic 35.0%
!! ATAGTTTAGGCTTTGGGATA+TGG - Chr3:85015977-85015996 MsG0380016548.01.T01:CDS 35.0%
!! CATTTTGGAGGAATGATTTC+AGG - Chr3:85014434-85014453 MsG0380016548.01.T01:intron 35.0%
!! GTCTTTATTATTTTGCCCAG+AGG - Chr3:85015487-85015506 MsG0380016548.01.T01:intron 35.0%
!! TTTATTATTTTGCCCAGAGG+AGG - Chr3:85015490-85015509 MsG0380016548.01.T01:intron 35.0%
!! TTTGTGGGTTTCTGGAATTA+AGG - Chr3:85014027-85014046 MsG0380016548.01.T01:intron 35.0%
AAACTAGGCTTAGGTGGTTT+GGG - Chr3:85012421-85012440 MsG0380016548.01.T01:intron 40.0%
AAATGGGTGAATGGCATGAT+TGG - Chr3:85011558-85011577 MsG0380016548.01.T01:CDS 40.0%
AACAAAGGCAAGACTAGAGA+AGG + Chr3:85013627-85013646 None:intergenic 40.0%
AAGTGCCAATAGTGAATCTG+TGG + Chr3:85015272-85015291 None:intergenic 40.0%
AATCTTGATGTATCCTCCTC+TGG + Chr3:85015506-85015525 None:intergenic 40.0%
ACAAAGGCAAGACTAGAGAA+GGG + Chr3:85013626-85013645 None:intergenic 40.0%
ACCTTCTCCTCTCAAAATGA+CGG - Chr3:85012020-85012039 MsG0380016548.01.T01:CDS 40.0%
ACTGAACAAAGCTGCTAATG+AGG + Chr3:85014867-85014886 None:intergenic 40.0%
AGGTGTAGACTACAGTGAAA+AGG + Chr3:85016371-85016390 None:intergenic 40.0%
AGTCAATGTCAATTGTCCTC+AGG + Chr3:85012976-85012995 None:intergenic 40.0%
AGTGAGAGTAGATCAAATGG+AGG - Chr3:85012476-85012495 MsG0380016548.01.T01:intron 40.0%
ATAACCATACTTGACCAGGT+AGG + Chr3:85012836-85012855 None:intergenic 40.0%
ATCAGAAACGAAAGCCTTGA+CGG - Chr3:85011805-85011824 MsG0380016548.01.T01:intron 40.0%
ATCTTGATGTATCCTCCTCT+GGG + Chr3:85015505-85015524 None:intergenic 40.0%
CACCTATAGTAGAAAGATGG+TGG - Chr3:85012398-85012417 MsG0380016548.01.T01:intron 40.0%
CCAAGATATCATCACTTTGG+AGG - Chr3:85014258-85014277 MsG0380016548.01.T01:intron 40.0%
CCTCCAAAGTGATGATATCT+TGG + Chr3:85014261-85014280 None:intergenic 40.0%
CGTGAAGCTTCTTCATCAAA+AGG - Chr3:85014575-85014594 MsG0380016548.01.T01:intron 40.0%
CTGAACAAAGCTGCTAATGA+GGG + Chr3:85014866-85014885 None:intergenic 40.0%
CTGCATATATCACCTGTAGA+TGG - Chr3:85013408-85013427 MsG0380016548.01.T01:intron 40.0%
CTTCACCAAGTATTCAGCTA+TGG + Chr3:85016127-85016146 None:intergenic 40.0%
CTTGCCTACAGAAAGTTGAA+GGG + Chr3:85012919-85012938 None:intergenic 40.0%
GAAATATGTGCAGACAGTGA+AGG - Chr3:85015716-85015735 MsG0380016548.01.T01:intron 40.0%
GAATGCTGATGTAAATGCCA+AGG - Chr3:85015805-85015824 MsG0380016548.01.T01:CDS 40.0%
GAGGATAGTCAGATCACTAA+AGG - Chr3:85012495-85012514 MsG0380016548.01.T01:intron 40.0%
GATGTTCAGCTTCAGCTTTA+TGG - Chr3:85011955-85011974 MsG0380016548.01.T01:intron 40.0%
GATTTCAGGAACTGATCACA+AGG - Chr3:85014448-85014467 MsG0380016548.01.T01:intron 40.0%
GCAAGGACAATATTGCTTTG+TGG - Chr3:85014011-85014030 MsG0380016548.01.T01:intron 40.0%
GGTAAGAGAAGATTAAACCG+AGG + Chr3:85011606-85011625 None:intergenic 40.0%
GGTGTAGACTACAGTGAAAA+GGG + Chr3:85016370-85016389 None:intergenic 40.0%
GTCAAAGAAACAACACGAGT+TGG + Chr3:85013249-85013268 None:intergenic 40.0%
GTTGTTGAATGAAACGACGA+TGG + Chr3:85011647-85011666 None:intergenic 40.0%
TAACTACTGGAGAGACATCA+GGG + Chr3:85013502-85013521 None:intergenic 40.0%
TACTGAAGGTCCTTGTAGTA+CGG - Chr3:85011993-85012012 MsG0380016548.01.T01:CDS 40.0%
TCTCAAAAAGCCTCAGCAAT+TGG - Chr3:85015016-85015035 MsG0380016548.01.T01:intron 40.0%
TCTCCAGTAGTTAGATTGGT+GGG - Chr3:85013509-85013528 MsG0380016548.01.T01:intron 40.0%
TCTTCCTCATGCTGCATAAA+CGG + Chr3:85016219-85016238 None:intergenic 40.0%
TGATAGACCTCCTAAGAATC+GGG + Chr3:85013562-85013581 None:intergenic 40.0%
TGCCATCATTGTCTTCTGAA+TGG + Chr3:85016164-85016183 None:intergenic 40.0%
TGTATCATCGTGTGAAACGA+CGG + Chr3:85011707-85011726 None:intergenic 40.0%
TGTCTCTCCAGTAGTTAGAT+TGG - Chr3:85013505-85013524 MsG0380016548.01.T01:intron 40.0%
TTATAACGGTCCCGATTCTT+AGG - Chr3:85013549-85013568 MsG0380016548.01.T01:intron 40.0%
! AGTGAGATTGATTCTCTACG+AGG - Chr3:85013592-85013611 MsG0380016548.01.T01:intron 40.0%
! GACAATTGACATTGACTGTG+TGG - Chr3:85012979-85012998 MsG0380016548.01.T01:intron 40.0%
! TAGCTTTTGCGCCAAAATCA+CGG - Chr3:85012683-85012702 MsG0380016548.01.T01:intron 40.0%
! TCAGCTCTTTGTTTACGAAG+AGG - Chr3:85013333-85013352 MsG0380016548.01.T01:intron 40.0%
! TTTTCCTACCTGGTCAAGTA+TGG - Chr3:85012829-85012848 MsG0380016548.01.T01:intron 40.0%
!! ATTCACGGATTTGCTAGAGA+GGG - Chr3:85014672-85014691 MsG0380016548.01.T01:intron 40.0%
!! CATTTTTAGGCCAATTGCTG+AGG + Chr3:85015029-85015048 None:intergenic 40.0%
!! GGAGAGTACTGAATTAGATG+AGG - Chr3:85011864-85011883 MsG0380016548.01.T01:intron 40.0%
!! GTAGAAAGATGGTGGAAACT+AGG - Chr3:85012406-85012425 MsG0380016548.01.T01:intron 40.0%
!! GTGACATCTGTAGTTCTAAG+TGG - Chr3:85016193-85016212 MsG0380016548.01.T01:five_prime_UTR 40.0%
!!! ATGCAGTCATTTTTCCTACC+TGG - Chr3:85012819-85012838 MsG0380016548.01.T01:intron 40.0%
AACAACTTGCAGCACACTGA+AGG + Chr3:85014796-85014815 None:intergenic 45.0%
ACGGCTTATTAGCTCACCAA+AGG + Chr3:85013033-85013052 None:intergenic 45.0%
ACGTACATCCTGAAGGGATT+TGG + Chr3:85016296-85016315 None:intergenic 45.0%
AGATGCAAGAGAGATGCAAG+TGG + Chr3:85015228-85015247 None:intergenic 45.0%
AGTATGGTTATCTCGCTGTG+CGG - Chr3:85012845-85012864 MsG0380016548.01.T01:intron 45.0%
AGTCAGATCACTAAAGGGAG+AGG - Chr3:85012501-85012520 MsG0380016548.01.T01:intron 45.0%
ATGCCTTATCCCACCAAATG+AGG + Chr3:85012641-85012660 None:intergenic 45.0%
ATGGACACGTACATCCTGAA+GGG + Chr3:85016302-85016321 None:intergenic 45.0%
ATGTAGCCAACCTCATTTGG+TGG - Chr3:85012628-85012647 MsG0380016548.01.T01:intron 45.0%
ATTGGTGGGATGTCTTCAAG+TGG - Chr3:85013523-85013542 MsG0380016548.01.T01:intron 45.0%
CAAAGGCAAGACTAGAGAAG+GGG + Chr3:85013625-85013644 None:intergenic 45.0%
CATAACCAATTAGTGGCGCA+TGG + Chr3:85013434-85013453 None:intergenic 45.0%
CATCCCACCAATCTAACTAC+TGG + Chr3:85013515-85013534 None:intergenic 45.0%
CCTTCTCCTCTCAAAATGAC+GGG - Chr3:85012021-85012040 MsG0380016548.01.T01:CDS 45.0%
CGAGATAACCATACTTGACC+AGG + Chr3:85012840-85012859 None:intergenic 45.0%
CGTACATCCTGAAGGGATTT+GGG + Chr3:85016295-85016314 None:intergenic 45.0%
CTAACTACTGGAGAGACATC+AGG + Chr3:85013503-85013522 None:intergenic 45.0%
CTCTCCAGTAGTTAGATTGG+TGG - Chr3:85013508-85013527 MsG0380016548.01.T01:intron 45.0%
CTCTCTAGCAAATCCGTGAA+TGG + Chr3:85014673-85014692 None:intergenic 45.0%
CTTATCCCACCAAATGAGGT+TGG + Chr3:85012637-85012656 None:intergenic 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - Chr3:85012420-85012439 MsG0380016548.01.T01:intron 45.0%
GATAAGGCATGGTTGTGTAG+TGG - Chr3:85012651-85012670 MsG0380016548.01.T01:intron 45.0%
GATGCAAGAGAGATGCAAGT+GGG + Chr3:85015227-85015246 None:intergenic 45.0%
GCTTGCCTACAGAAAGTTGA+AGG + Chr3:85012920-85012939 None:intergenic 45.0%
GGAAAAAACACACGTGGCAT+CGG + Chr3:85014400-85014419 None:intergenic 45.0%
GGGATTTCCATCTGCACTAT+TGG - Chr3:85015866-85015885 MsG0380016548.01.T01:CDS 45.0%
TATGGACACGTACATCCTGA+AGG + Chr3:85016303-85016322 None:intergenic 45.0%
TCCATGTAGCCAACCTCATT+TGG - Chr3:85012625-85012644 MsG0380016548.01.T01:intron 45.0%
TCGCTGTGCGGTAAAAAGAA+AGG - Chr3:85012857-85012876 MsG0380016548.01.T01:intron 45.0%
TGACAGAGAAGTAAAACCGG+CGG - Chr3:85013265-85013284 MsG0380016548.01.T01:intron 45.0%
TGTAGCCAACCTCATTTGGT+GGG - Chr3:85012629-85012648 MsG0380016548.01.T01:intron 45.0%
! ACCAAATGAGGTTGGCTACA+TGG + Chr3:85012629-85012648 None:intergenic 45.0%
! AGCTTTTGCGCCAAAATCAC+GGG - Chr3:85012684-85012703 MsG0380016548.01.T01:intron 45.0%
! CAACCTCATTTGGTGGGATA+AGG - Chr3:85012635-85012654 MsG0380016548.01.T01:intron 45.0%
! GTTTGGATGAGCGGTTAGTT+TGG - Chr3:85012319-85012338 MsG0380016548.01.T01:intron 45.0%
! TCATTTGGTGGGATAAGGCA+TGG - Chr3:85012640-85012659 MsG0380016548.01.T01:intron 45.0%
! TGATGATGATTGGGAAGGTG+TGG - Chr3:85011843-85011862 MsG0380016548.01.T01:intron 45.0%
!! AAAATGACGGGCGTGCTAAA+TGG - Chr3:85012033-85012052 MsG0380016548.01.T01:CDS 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG - Chr3:85012412-85012431 MsG0380016548.01.T01:intron 45.0%
!! CATTCACGGATTTGCTAGAG+AGG - Chr3:85014671-85014690 MsG0380016548.01.T01:intron 45.0%
!!! CTGCTTTTTGCAAAGCAGCT+TGG - Chr3:85013790-85013809 MsG0380016548.01.T01:intron 45.0%
!! TAAAAATAATAAATTATTCT+AGG + Chr3:85013717-85013736 None:intergenic 5.0%
AAACGAAAGCCTTGACGGTG+GGG - Chr3:85011810-85011829 MsG0380016548.01.T01:intron 50.0%
AATCATCATCCCCACCGTCA+AGG + Chr3:85011822-85011841 None:intergenic 50.0%
AATGTCACAGAGCTGCTGGT+TGG - Chr3:85015779-85015798 MsG0380016548.01.T01:CDS 50.0%
AGAAACGAAAGCCTTGACGG+TGG - Chr3:85011808-85011827 MsG0380016548.01.T01:intron 50.0%
AGGCAAGCGTGGCAGAAATT+GGG - Chr3:85012932-85012951 MsG0380016548.01.T01:intron 50.0%
ATCCTGAAGGGATTTGGGCA+AGG + Chr3:85016290-85016309 None:intergenic 50.0%
ATCCTTGCCCAAATCCCTTC+AGG - Chr3:85016285-85016304 MsG0380016548.01.T01:five_prime_UTR 50.0%
CAACTTTCTGTAGGCAAGCG+TGG - Chr3:85012921-85012940 MsG0380016548.01.T01:intron 50.0%
CAATTGTCCTCAGGATCCTC+AGG + Chr3:85012967-85012986 None:intergenic 50.0%
CACGTAACAGCGTAATGCAG+TGG + Chr3:85016093-85016112 None:intergenic 50.0%
CCAGCAGCTCTGTGACATTA+AGG + Chr3:85015778-85015797 None:intergenic 50.0%
CCATTACCTAAGCGGTGCAT+AGG + Chr3:85016391-85016410 None:intergenic 50.0%
CCTATGCACCGCTTAGGTAA+TGG - Chr3:85016388-85016407 MsG0380016548.01.T01:five_prime_UTR 50.0%
CCTTAATGTCACAGAGCTGC+TGG - Chr3:85015775-85015794 MsG0380016548.01.T01:CDS 50.0%
GAAACGAAAGCCTTGACGGT+GGG - Chr3:85011809-85011828 MsG0380016548.01.T01:intron 50.0%
GAAGGTTGAGCCGTACTACA+AGG + Chr3:85012006-85012025 None:intergenic 50.0%
GACAGAGAAGTAAAACCGGC+GGG - Chr3:85013266-85013285 MsG0380016548.01.T01:intron 50.0%
GACGACGTCGTTTATGATCC+CGG - Chr3:85011733-85011752 MsG0380016548.01.T01:intron 50.0%
GAGCTGAATACTGGTCCCAT+TGG + Chr3:85013320-85013339 None:intergenic 50.0%
GCAGCTCCCCTATCAATGAT+AGG - Chr3:85013667-85013686 MsG0380016548.01.T01:intron 50.0%
TAACGGTCCCGATTCTTAGG+AGG - Chr3:85013552-85013571 MsG0380016548.01.T01:intron 50.0%
TAGGCAAGCGTGGCAGAAAT+TGG - Chr3:85012931-85012950 MsG0380016548.01.T01:intron 50.0%
TATGTGCAGACAGTGAAGGC+CGG - Chr3:85015720-85015739 MsG0380016548.01.T01:intron 50.0%
TCTACACCTATGCACCGCTT+AGG - Chr3:85016382-85016401 MsG0380016548.01.T01:five_prime_UTR 50.0%
TGCAGATGGAAATCCCCTGA+AGG + Chr3:85015862-85015881 None:intergenic 50.0%
TGGGCTTGTAGAGGGAAGAA+CGG - Chr3:85012440-85012459 MsG0380016548.01.T01:intron 50.0%
TGGTGGAAACTAGGCTTAGG+TGG - Chr3:85012415-85012434 MsG0380016548.01.T01:intron 50.0%
! AATTGGGTGCTATGCTCCTG+AGG - Chr3:85012948-85012967 MsG0380016548.01.T01:intron 50.0%
! AGCCATAACCGACTCAGCTT+CGG + Chr3:85011773-85011792 None:intergenic 50.0%
! AGGATGACAAAAGCGCGACA+AGG + Chr3:85014335-85014354 None:intergenic 50.0%
! AGGTGGTTTGGGCTTGTAGA+GGG - Chr3:85012432-85012451 MsG0380016548.01.T01:intron 50.0%
! ATGGTGAGTCCCCGTGATTT+TGG + Chr3:85012697-85012716 None:intergenic 50.0%
! GCTTTTGCGCCAAAATCACG+GGG - Chr3:85012685-85012704 MsG0380016548.01.T01:intron 50.0%
! TAGGTGGTTTGGGCTTGTAG+AGG - Chr3:85012431-85012450 MsG0380016548.01.T01:intron 50.0%
!! ATTTTGCTGTCTCGTGCCAG+AGG - Chr3:85015623-85015642 MsG0380016548.01.T01:intron 50.0%
!! CCCGTCATTTTGAGAGGAGA+AGG + Chr3:85012024-85012043 None:intergenic 50.0%
!! TTGGCTTGATGGTGCACCTT+TGG - Chr3:85013014-85013033 MsG0380016548.01.T01:intron 50.0%
ACGGGGACTCACCATGATTC+TGG - Chr3:85012702-85012721 MsG0380016548.01.T01:intron 55.0%
AGAGAAGTAAAACCGGCGGG+TGG - Chr3:85013269-85013288 MsG0380016548.01.T01:intron 55.0%
AGCCGAAGCTGAGTCGGTTA+TGG - Chr3:85011768-85011787 MsG0380016548.01.T01:intron 55.0%
ATCGTGTGAAACGACGGCGT+TGG + Chr3:85011701-85011720 None:intergenic 55.0%
CTATGCTCCTGAGGATCCTG+AGG - Chr3:85012957-85012976 MsG0380016548.01.T01:intron 55.0%
GAGTCGGTTATGGCTGAGCA+AGG - Chr3:85011778-85011797 MsG0380016548.01.T01:intron 55.0%
GATGGCCATGCGCCACTAAT+TGG - Chr3:85013426-85013445 MsG0380016548.01.T01:intron 55.0%
GCAAGACTAGAGAAGGGGAG+AGG + Chr3:85013620-85013639 None:intergenic 55.0%
GTGGCCGTTTATGCAGCATG+AGG - Chr3:85016212-85016231 MsG0380016548.01.T01:five_prime_UTR 55.0%
TCGACACCTTCTGCGAAAGC+CGG + Chr3:85011933-85011952 None:intergenic 55.0%
! AACCGACTCAGCTTCGGCTT+CGG + Chr3:85011767-85011786 None:intergenic 55.0%
!! AGCACGCCCGTCATTTTGAG+AGG + Chr3:85012030-85012049 None:intergenic 55.0%
ACTCAGCTTCGGCTTCGGGA+CGG + Chr3:85011762-85011781 None:intergenic 60.0%
AGTGGCGCATGGCCATCTAC+AGG + Chr3:85013423-85013442 None:intergenic 60.0%
CGATCCACAGCCCAGTGTAG+CGG + Chr3:85015749-85015768 None:intergenic 60.0%
CTACACTGGGCTGTGGATCG+TGG - Chr3:85015749-85015768 MsG0380016548.01.T01:CDS 60.0%
GAAGTAAAACCGGCGGGTGG+TGG - Chr3:85013272-85013291 MsG0380016548.01.T01:intron 60.0%
GTCCCCGAGCCTCTGAACTT+GGG + Chr3:85013298-85013317 None:intergenic 60.0%
GTGGCCCAAGTTCAGAGGCT+CGG - Chr3:85013291-85013310 MsG0380016548.01.T01:intron 60.0%
TCAGAGGCTCGGGGACCAAT+GGG - Chr3:85013302-85013321 MsG0380016548.01.T01:intron 60.0%
TCCCGAAGCCGAAGCTGAGT+CGG - Chr3:85011762-85011781 MsG0380016548.01.T01:intron 60.0%
TGGCCCAAGTTCAGAGGCTC+GGG - Chr3:85013292-85013311 MsG0380016548.01.T01:intron 60.0%
TTCAGAGGCTCGGGGACCAA+TGG - Chr3:85013301-85013320 MsG0380016548.01.T01:intron 60.0%
! ACCGACTCAGCTTCGGCTTC+GGG + Chr3:85011766-85011785 None:intergenic 60.0%
! TCACAGAGCTGCTGGTTGGC+AGG - Chr3:85015783-85015802 MsG0380016548.01.T01:CDS 60.0%
! TTTTGTTGCTGCTGCCGCCG+CGG - Chr3:85011906-85011925 MsG0380016548.01.T01:intron 60.0%
AAGGCCGGACACCGCTACAC+TGG - Chr3:85015735-85015754 MsG0380016548.01.T01:intron 65.0%
AGGCCGGACACCGCTACACT+GGG - Chr3:85015736-85015755 MsG0380016548.01.T01:intron 65.0%
CAGCCCAGTGTAGCGGTGTC+CGG + Chr3:85015742-85015761 None:intergenic 65.0%
CTTCTGCGAAAGCCGGTCCG+CGG + Chr3:85011926-85011945 None:intergenic 65.0%
GACACCGCTACACTGGGCTG+TGG - Chr3:85015742-85015761 MsG0380016548.01.T01:intron 65.0%
GGCCCAAGTTCAGAGGCTCG+GGG - Chr3:85013293-85013312 MsG0380016548.01.T01:intron 65.0%
GGTCCCCGAGCCTCTGAACT+TGG + Chr3:85013299-85013318 None:intergenic 65.0%
TTCGGCTTCGGGACGGTGTC+CGG + Chr3:85011755-85011774 None:intergenic 65.0%
! GGGTGGTGGCCCAAGTTCAG+AGG - Chr3:85013286-85013305 MsG0380016548.01.T01:intron 65.0%
GAACTTGGGCCACCACCCGC+CGG + Chr3:85013284-85013303 None:intergenic 70.0%
TCGGCTTCGGGACGGTGTCC+GGG + Chr3:85011754-85011773 None:intergenic 70.0%
! CGCGGACCGGCTTTCGCAGA+AGG - Chr3:85011924-85011943 MsG0380016548.01.T01:intron 70.0%
CTGCGAAAGCCGGTCCGCGG+CGG + Chr3:85011923-85011942 None:intergenic 75.0%
TTGCTGCTGCCGCCGCGGAC+CGG - Chr3:85011911-85011930 MsG0380016548.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 85011356 85016446 85011356 ID=MsG0380016548.01;Name=MsG0380016548.01
Chr3 mRNA 85011356 85016446 85011356 ID=MsG0380016548.01.T01;Parent=MsG0380016548.01;Name=MsG0380016548.01.T01;_AED=0.37;_eAED=0.37;_QI=431|0.33|0.5|1|0.33|0.5|4|198|222
Chr3 exon 85011356 85011730 85011356 ID=MsG0380016548.01.T01:exon:14438;Parent=MsG0380016548.01.T01
Chr3 exon 85011976 85012069 85011976 ID=MsG0380016548.01.T01:exon:14437;Parent=MsG0380016548.01.T01
Chr3 exon 85014767 85014896 85014767 ID=MsG0380016548.01.T01:exon:14436;Parent=MsG0380016548.01.T01
Chr3 exon 85015748 85016446 85015748 ID=MsG0380016548.01.T01:exon:14435;Parent=MsG0380016548.01.T01
Chr3 five_prime_UTR 85016016 85016446 85016016 ID=MsG0380016548.01.T01:five_prime_utr;Parent=MsG0380016548.01.T01
Chr3 CDS 85015748 85016015 85015748 ID=MsG0380016548.01.T01:cds;Parent=MsG0380016548.01.T01
Chr3 CDS 85014767 85014896 85014767 ID=MsG0380016548.01.T01:cds;Parent=MsG0380016548.01.T01
Chr3 CDS 85011976 85012069 85011976 ID=MsG0380016548.01.T01:cds;Parent=MsG0380016548.01.T01
Chr3 CDS 85011554 85011730 85011554 ID=MsG0380016548.01.T01:cds;Parent=MsG0380016548.01.T01
Chr3 three_prime_UTR 85011356 85011553 85011356 ID=MsG0380016548.01.T01:three_prime_utr;Parent=MsG0380016548.01.T01
Gene Sequence

>MsG0380016548.01.T01

ATGGCTGAGCAAGGTAGCATCAGAAACGAAAGCCTTGACGGTGGGGATGATGATTATGATGATGATTGGGAAGGTGTGGAGAGTACTGAATTAGATGAGGCTTTCAGCGCTGCTACTGCTTTTGTTGCTGCTGCCGCCGCGGACCGGCTTTCGCAGAAGGTGTCGAATGATGTTCAGCTTCAGCTTTATGGGTTGTATAAGATTGCTACTGAAGGTCCTTGTAGTACGGCTCAACCTTCTCCTCTCAAAATGACGGGCGTGCTAAATGTGCTAATATACCCTTCAACTTTCTGTAGGCAAGCGTGGCAGAAATTGGGTGCTATGCTCCTGAGGATCCTGAGGACAATTGACATTGACTGTGTGGAACTATATCTACTTGGCTTGATGGTGCACCTTTGTGAAGGCCGGACACCGCTACACTGGGCTGTGGATCGTGGTCACCTTAATGTCACAGAGCTGCTGGTTGGCAGGAATGCTGATGTAAATGCCAAGGATAATGATGGACAAACTCCACTGCATTACGCTGTTACGTGCGAGAGAGAATCCATAGCTGAATACTTGGTGAAGCATAGTGCAGACATCCATTCAGAAGACAATGATGGCAGTTCATCGCGTGACATCTGTAGTTCTAAGTGGCCGTTTATGCAGCATGAGGAAGAAGTAAAATGA
Protein sequence

>MsG0380016548.01.T01

MAEQGSIRNESLDGGDDDYDDDWEGVESTELDEAFSAATAFVAAAAADRLSQKVSNDVQLQLYGLYKIATEGPCSTAQPSPLKMTGVLNVLIYPSTFCRQAWQKLGAMLLRILRTIDIDCVELYLLGLMVHLCEGRTPLHWAVDRGHLNVTELLVGRNADVNAKDNDGQTPLHYAVTCERESIAEYLVKHSADIHSEDNDGSSSRDICSSKWPFMQHEEEVK*