Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046364.01.T01 | XP_003608962.2 | 99.13 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.41E-76 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046364.01.T01 | Q93X17 | 66.154 | 65 | 21 | 1 | 51 | 115 | 41 | 104 | 1.16E-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046364.01.T01 | B7FJ32 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 6.72e-77 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049059.01 | MsG0880046364.01 | 0.808748 | 2.659262e-50 | 1.532821e-47 |
| MsG0880046364.01 | MsG0880046947.01 | 0.801443 | 8.982053e-49 | 4.290077e-46 |
| MsG0180003409.01 | MsG0880046364.01 | 0.813132 | 2.988605e-51 | 1.935363e-48 |
| MsG0180004761.01 | MsG0880046364.01 | -0.807965 | 3.905230e-50 | 2.205230e-47 |
| MsG0280010794.01 | MsG0880046364.01 | 0.800366 | 1.490939e-48 | 6.929637e-46 |
| MsG0280010355.01 | MsG0880046364.01 | -0.820059 | 8.378494e-53 | 6.560658e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046364.01.T01 | MTR_4g106860 | 99.130 | 115 | 1 | 0 | 1 | 115 | 1 | 115 | 1.70e-80 | 231 |
| MsG0880046364.01.T01 | MTR_8g062800 | 56.364 | 110 | 44 | 1 | 6 | 115 | 7 | 112 | 2.00e-38 | 125 |
| MsG0880046364.01.T01 | MTR_3g113890 | 47.826 | 115 | 48 | 3 | 1 | 115 | 1 | 103 | 5.97e-28 | 98.6 |
| MsG0880046364.01.T01 | MTR_1g025220 | 46.957 | 115 | 47 | 3 | 1 | 115 | 1 | 101 | 9.75e-27 | 95.5 |
| MsG0880046364.01.T01 | MTR_6g007897 | 72.131 | 61 | 17 | 0 | 55 | 115 | 188 | 248 | 6.89e-25 | 94.7 |
| MsG0880046364.01.T01 | MTR_1g025250 | 63.636 | 66 | 23 | 1 | 50 | 115 | 36 | 100 | 9.87e-23 | 85.1 |
| MsG0880046364.01.T01 | MTR_8g075920 | 62.121 | 66 | 24 | 1 | 50 | 115 | 39 | 103 | 1.54e-21 | 82.4 |
| MsG0880046364.01.T01 | MTR_1g096370 | 48.718 | 78 | 38 | 2 | 39 | 115 | 19 | 95 | 3.35e-19 | 76.3 |
| MsG0880046364.01.T01 | MTR_6g007913 | 59.677 | 62 | 24 | 1 | 55 | 115 | 77 | 138 | 5.41e-17 | 71.6 |
| MsG0880046364.01.T01 | MTR_6g007917 | 57.377 | 61 | 26 | 0 | 55 | 115 | 98 | 158 | 5.87e-17 | 72.0 |
| MsG0880046364.01.T01 | MTR_0254s0070 | 56.452 | 62 | 26 | 1 | 55 | 115 | 103 | 164 | 4.34e-14 | 64.7 |
| MsG0880046364.01.T01 | MTR_3g113850 | 59.091 | 44 | 18 | 0 | 55 | 98 | 406 | 449 | 7.13e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046364.01.T01 | AT5G14920 | 66.129 | 62 | 21 | 0 | 54 | 115 | 214 | 275 | 2.04e-22 | 89.0 |
| MsG0880046364.01.T01 | AT4G09600 | 64.516 | 62 | 21 | 1 | 54 | 115 | 39 | 99 | 9.39e-22 | 82.8 |
| MsG0880046364.01.T01 | AT2G18420 | 62.903 | 62 | 22 | 1 | 54 | 115 | 34 | 94 | 7.99e-21 | 80.5 |
| MsG0880046364.01.T01 | AT2G18420 | 62.903 | 62 | 22 | 1 | 54 | 115 | 10 | 70 | 8.03e-21 | 79.7 |
| MsG0880046364.01.T01 | AT1G75750 | 57.576 | 66 | 27 | 1 | 50 | 115 | 34 | 98 | 1.09e-20 | 80.1 |
| MsG0880046364.01.T01 | AT1G75750 | 57.576 | 66 | 27 | 1 | 50 | 115 | 33 | 97 | 1.27e-20 | 79.7 |
| MsG0880046364.01.T01 | AT1G22690 | 58.065 | 62 | 25 | 1 | 54 | 115 | 59 | 119 | 5.99e-19 | 76.3 |
| MsG0880046364.01.T01 | AT1G22690 | 58.065 | 62 | 25 | 1 | 54 | 115 | 59 | 119 | 5.99e-19 | 76.3 |
| MsG0880046364.01.T01 | AT1G22690 | 58.065 | 62 | 25 | 1 | 54 | 115 | 59 | 119 | 5.99e-19 | 76.3 |
| MsG0880046364.01.T01 | AT4G09610 | 61.290 | 62 | 23 | 1 | 54 | 115 | 39 | 99 | 3.67e-13 | 60.8 |
| MsG0880046364.01.T01 | AT1G74670 | 31.858 | 113 | 65 | 2 | 3 | 115 | 1 | 101 | 2.43e-11 | 56.2 |
Find 51 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTTAATATTGTTGATATT+TGG | 0.162273 | 8:-72435471 | MsG0880046364.01.T01:three_prime_UTR |
| CATGCTCTCTTGCACAAATT+TGG | 0.199596 | 8:+72435854 | None:intergenic |
| CATTGTTCTCTATAATTATT+AGG | 0.211018 | 8:+72435391 | None:intergenic |
| TACTAGTGTAGTTTGGTAAA+TGG | 0.244704 | 8:-72435651 | MsG0880046364.01.T01:three_prime_UTR |
| TTTAAAATTCTCCTCTCTAA+TGG | 0.280437 | 8:-72436534 | MsG0880046364.01.T01:exon |
| GCCCATGGGCCTAATTAGTT+TGG | 0.284816 | 8:-72435700 | MsG0880046364.01.T01:three_prime_UTR |
| GGGCTTTGATAAGGTCTCTA+AGG | 0.305310 | 8:+72435719 | None:intergenic |
| TTACGCAAGCTTCTTGTCTT+CGG | 0.310911 | 8:-72436509 | MsG0880046364.01.T01:CDS |
| GAAGAGAGCCCAAACTAATT+AGG | 0.320634 | 8:+72435691 | None:intergenic |
| TACGCAAGCTTCTTGTCTTC+GGG | 0.326759 | 8:-72436508 | MsG0880046364.01.T01:CDS |
| CACCTGGTACTGCCGGTAAT+AGG | 0.335185 | 8:-72435799 | MsG0880046364.01.T01:CDS |
| TATGTTGTGGTAACTAACTA+TGG | 0.368562 | 8:-72435524 | MsG0880046364.01.T01:three_prime_UTR |
| ACCTGGTACTGCCGGTAATA+GGG | 0.401958 | 8:-72435798 | MsG0880046364.01.T01:CDS |
| CCCATGGGCCTAATTAGTTT+GGG | 0.408002 | 8:-72435699 | MsG0880046364.01.T01:three_prime_UTR |
| AAACTATACTCATCAACTTA+AGG | 0.422877 | 8:-72436577 | None:intergenic |
| TCCACAAAACTCCCTATTAC+CGG | 0.431014 | 8:+72435787 | None:intergenic |
| ACTAGTGTAGTTTGGTAAAT+GGG | 0.439046 | 8:-72435650 | MsG0880046364.01.T01:three_prime_UTR |
| TAGGCCCATGGGCTTTGATA+AGG | 0.442762 | 8:+72435710 | None:intergenic |
| CAAGGTGCAGTGTGCATTCA+AGG | 0.442762 | 8:-72435877 | MsG0880046364.01.T01:CDS |
| CAGACTGTGGAGGGCTATGC+AGG | 0.492139 | 8:-72435901 | MsG0880046364.01.T01:CDS |
| TAGTACCTACTAGTGTAGTT+TGG | 0.501441 | 8:-72435658 | MsG0880046364.01.T01:three_prime_UTR |
| ATTTACCAAACTACACTAGT+AGG | 0.502074 | 8:+72435653 | None:intergenic |
| CTTGGTCTTGTTACCATGAG+TGG | 0.515862 | 8:+72435745 | None:intergenic |
| ATCTGATCATGAGATAGAAA+AGG | 0.540603 | 8:-72436218 | MsG0880046364.01.T01:CDS |
| TCCCTATTACCGGCAGTACC+AGG | 0.543014 | 8:+72435797 | None:intergenic |
| AATGCATTTAACTGATAAGC+CGG | 0.550151 | 8:-72436182 | MsG0880046364.01.T01:intron |
| GCCCAAACTAATTAGGCCCA+TGG | 0.551582 | 8:+72435698 | None:intergenic |
| ATAAGGTCTCTAAGGGCACT+TGG | 0.552905 | 8:+72435727 | None:intergenic |
| TGTGTCCCACCTGGTACTGC+CGG | 0.553087 | 8:-72435806 | MsG0880046364.01.T01:CDS |
| GGCTTTGATAAGGTCTCTAA+GGG | 0.558100 | 8:+72435720 | None:intergenic |
| CTTCAGCTTATTGTGCGAGA+CGG | 0.558872 | 8:-72436046 | MsG0880046364.01.T01:intron |
| AGAGACCTTATCAAAGCCCA+TGG | 0.565394 | 8:-72435715 | MsG0880046364.01.T01:three_prime_UTR |
| TACACTGATATGACCACTCA+TGG | 0.567522 | 8:-72435758 | MsG0880046364.01.T01:CDS |
| TGTTAAACCTTTGTATTCGT+AGG | 0.570058 | 8:-72435571 | MsG0880046364.01.T01:three_prime_UTR |
| CCCAAACTAATTAGGCCCAT+GGG | 0.581285 | 8:+72435699 | None:intergenic |
| AGAAGGCTAATGCAAGACAT+AGG | 0.585779 | 8:-72436019 | MsG0880046364.01.T01:intron |
| AGGTGCAAGTGTGTCCCACC+TGG | 0.590839 | 8:-72435815 | MsG0880046364.01.T01:CDS |
| AATTTGTGCAAGAGAGCATG+TGG | 0.594899 | 8:-72435851 | MsG0880046364.01.T01:CDS |
| GTGGAGGGCTATGCAGGTCA+AGG | 0.600120 | 8:-72435895 | MsG0880046364.01.T01:CDS |
| TTGTGCGAGACGGAAACAGA+AGG | 0.605905 | 8:-72436036 | MsG0880046364.01.T01:CDS |
| TCAAAATCCTACGAATACAA+AGG | 0.641840 | 8:+72435564 | None:intergenic |
| CATGTGGGACTTGCTGTGTG+AGG | 0.647718 | 8:-72435835 | MsG0880046364.01.T01:CDS |
| TACAAGTTAGTACCTTAGAG+AGG | 0.650629 | 8:+72436468 | None:intergenic |
| AGTCATATCTATCCGATGTG+AGG | 0.655410 | 8:-72435425 | MsG0880046364.01.T01:three_prime_UTR |
| CTTGCGTAATGCCATTAGAG+AGG | 0.657310 | 8:+72436523 | None:intergenic |
| GAGACCTTATCAAAGCCCAT+GGG | 0.661282 | 8:-72435714 | MsG0880046364.01.T01:three_prime_UTR |
| TACACTAGTAGGTACTACGT+GGG | 0.679336 | 8:+72435664 | None:intergenic |
| CTACACTAGTAGGTACTACG+TGG | 0.684236 | 8:+72435663 | None:intergenic |
| CTATTACCGGCAGTACCAGG+TGG | 0.706350 | 8:+72435800 | None:intergenic |
| TATTACCGGCAGTACCAGGT+GGG | 0.719553 | 8:+72435801 | None:intergenic |
| ATTTGTGCAAGAGAGCATGT+GGG | 0.729137 | 8:-72435850 | MsG0880046364.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGAATGAAAAAAAATAAA+AGG | - | Chr8:72436329-72436348 | MsG0880046364.01.T01:intron | 10.0% |
| !!! | GTATATTTAGTTTTATTTTT+TGG | + | Chr8:72435959-72435978 | None:intergenic | 10.0% |
| !! | ATAAGCATTTAACATATATT+AGG | + | Chr8:72435871-72435890 | None:intergenic | 15.0% |
| !! | GTTCTATTTAAGTATAAAAA+AGG | + | Chr8:72435849-72435868 | None:intergenic | 15.0% |
| !! | AGAAAGTAAAAAATGAATAC+CGG | + | Chr8:72435788-72435807 | None:intergenic | 20.0% |
| !! | CATTGTTCTCTATAATTATT+AGG | + | Chr8:72436560-72436579 | None:intergenic | 20.0% |
| !! | CGTTTAATATTGTTGATATT+TGG | - | Chr8:72436477-72436496 | MsG0880046364.01.T01:intron | 20.0% |
| !! | GAATGAAAAAAAATAAAAGG+AGG | - | Chr8:72436332-72436351 | MsG0880046364.01.T01:intron | 20.0% |
| !! | TTTCAACCAATAACTTAAAA+TGG | + | Chr8:72435588-72435607 | None:intergenic | 20.0% |
| !!! | TTCATTTTTTACTTTCTTTC+TGG | - | Chr8:72435791-72435810 | MsG0880046364.01.T01:CDS | 20.0% |
| ! | AATGTTCAGTATAAGATGAA+AGG | + | Chr8:72435510-72435529 | None:intergenic | 25.0% |
| !! | ATAAAAAAGGTGAAGTACTT+TGG | + | Chr8:72435836-72435855 | None:intergenic | 25.0% |
| !! | TTTAAAATTCTCCTCTCTAA+TGG | - | Chr8:72435414-72435433 | MsG0880046364.01.T01:three_prime_UTR | 25.0% |
| !!! | TTTGGACCATTTTAAGTTAT+TGG | - | Chr8:72435579-72435598 | MsG0880046364.01.T01:three_prime_UTR | 25.0% |
| AATGCATTTAACTGATAAGC+CGG | - | Chr8:72435766-72435785 | MsG0880046364.01.T01:CDS | 30.0% | |
| ACTAGTGTAGTTTGGTAAAT+GGG | - | Chr8:72436298-72436317 | MsG0880046364.01.T01:intron | 30.0% | |
| ATCTGATCATGAGATAGAAA+AGG | - | Chr8:72435730-72435749 | MsG0880046364.01.T01:exon | 30.0% | |
| ATTTACCAAACTACACTAGT+AGG | + | Chr8:72436298-72436317 | None:intergenic | 30.0% | |
| TACTAGTGTAGTTTGGTAAA+TGG | - | Chr8:72436297-72436316 | MsG0880046364.01.T01:intron | 30.0% | |
| TATGTTGTGGTAACTAACTA+TGG | - | Chr8:72436424-72436443 | MsG0880046364.01.T01:intron | 30.0% | |
| TCAAAATCCTACGAATACAA+AGG | + | Chr8:72436387-72436406 | None:intergenic | 30.0% | |
| TGTTAAACCTTTGTATTCGT+AGG | - | Chr8:72436377-72436396 | MsG0880046364.01.T01:intron | 30.0% | |
| !! | GTAGGATTTTGATGTATTCT+CGG | - | Chr8:72436395-72436414 | MsG0880046364.01.T01:intron | 30.0% |
| GAAAAATACAAGCCTCACAT+CGG | + | Chr8:72436538-72436557 | None:intergenic | 35.0% | |
| GTTCAGTATAAGATGAAAGG+TGG | + | Chr8:72435507-72435526 | None:intergenic | 35.0% | |
| TACAAGTTAGTACCTTAGAG+AGG | + | Chr8:72435483-72435502 | None:intergenic | 35.0% | |
| TAGTACCTACTAGTGTAGTT+TGG | - | Chr8:72436290-72436309 | MsG0880046364.01.T01:intron | 35.0% | |
| ! | GTGTTTTGTCAATATCATGC+AGG | - | Chr8:72435703-72435722 | MsG0880046364.01.T01:three_prime_UTR | 35.0% |
| ! | TTCTCGGTTTTTGTATGTTG+TGG | - | Chr8:72436411-72436430 | MsG0880046364.01.T01:intron | 35.0% |
| AAGCCCTTGGTTTATGTCAT+GGG | - | Chr8:72435552-72435571 | MsG0880046364.01.T01:three_prime_UTR | 40.0% | |
| AGAAGGCTAATGCAAGACAT+AGG | - | Chr8:72435929-72435948 | MsG0880046364.01.T01:intron | 40.0% | |
| AGTCATATCTATCCGATGTG+AGG | - | Chr8:72436523-72436542 | MsG0880046364.01.T01:exon | 40.0% | |
| CATGCTCTCTTGCACAAATT+TGG | + | Chr8:72436097-72436116 | None:intergenic | 40.0% | |
| GAAGAGAGCCCAAACTAATT+AGG | + | Chr8:72436260-72436279 | None:intergenic | 40.0% | |
| TACACTAGTAGGTACTACGT+GGG | + | Chr8:72436287-72436306 | None:intergenic | 40.0% | |
| TACACTGATATGACCACTCA+TGG | - | Chr8:72436190-72436209 | MsG0880046364.01.T01:CDS | 40.0% | |
| TCCACAAAACTCCCTATTAC+CGG | + | Chr8:72436164-72436183 | None:intergenic | 40.0% | |
| TTACGCAAGCTTCTTGTCTT+CGG | - | Chr8:72435439-72435458 | MsG0880046364.01.T01:three_prime_UTR | 40.0% | |
| ! | AATTTGTGCAAGAGAGCATG+TGG | - | Chr8:72436097-72436116 | MsG0880046364.01.T01:intron | 40.0% |
| ! | AATTTTGTGCAGACTGTGGA+GGG | - | Chr8:72436038-72436057 | MsG0880046364.01.T01:CDS | 40.0% |
| ! | ATTTGTGCAAGAGAGCATGT+GGG | - | Chr8:72436098-72436117 | MsG0880046364.01.T01:intron | 40.0% |
| ! | GATCAATTTTGTGCAGACTG+TGG | - | Chr8:72436034-72436053 | MsG0880046364.01.T01:CDS | 40.0% |
| ! | GGCTTTGATAAGGTCTCTAA+GGG | + | Chr8:72436231-72436250 | None:intergenic | 40.0% |
| !! | GTTTATGTCATGGGGTGTTT+TGG | - | Chr8:72435561-72435580 | MsG0880046364.01.T01:three_prime_UTR | 40.0% |
| ACACCCCATGACATAAACCA+AGG | + | Chr8:72435559-72435578 | None:intergenic | 45.0% | |
| AGAGACCTTATCAAAGCCCA+TGG | - | Chr8:72436233-72436252 | MsG0880046364.01.T01:intron | 45.0% | |
| AGCCCTTGGTTTATGTCATG+GGG | - | Chr8:72435553-72435572 | MsG0880046364.01.T01:three_prime_UTR | 45.0% | |
| CAAGCCCTTGGTTTATGTCA+TGG | - | Chr8:72435551-72435570 | MsG0880046364.01.T01:three_prime_UTR | 45.0% | |
| CACCCCATGACATAAACCAA+GGG | + | Chr8:72435558-72435577 | None:intergenic | 45.0% | |
| CCCAAACTAATTAGGCCCAT+GGG | + | Chr8:72436252-72436271 | None:intergenic | 45.0% | |
| CTACACTAGTAGGTACTACG+TGG | + | Chr8:72436288-72436307 | None:intergenic | 45.0% | |
| CTTCAGCTTATTGTGCGAGA+CGG | - | Chr8:72435902-72435921 | MsG0880046364.01.T01:intron | 45.0% | |
| CTTGCGTAATGCCATTAGAG+AGG | + | Chr8:72435428-72435447 | None:intergenic | 45.0% | |
| GAGACCTTATCAAAGCCCAT+GGG | - | Chr8:72436234-72436253 | MsG0880046364.01.T01:intron | 45.0% | |
| TACGCAAGCTTCTTGTCTTC+GGG | - | Chr8:72435440-72435459 | MsG0880046364.01.T01:three_prime_UTR | 45.0% | |
| ! | CAATTTTGTGCAGACTGTGG+AGG | - | Chr8:72436037-72436056 | MsG0880046364.01.T01:CDS | 45.0% |
| ! | CCCATGGGCCTAATTAGTTT+GGG | - | Chr8:72436249-72436268 | MsG0880046364.01.T01:intron | 45.0% |
| ! | GCTTTTAGTGTGCCTCTCTA+AGG | - | Chr8:72435468-72435487 | MsG0880046364.01.T01:three_prime_UTR | 45.0% |
| ! | GGGCTTTGATAAGGTCTCTA+AGG | + | Chr8:72436232-72436251 | None:intergenic | 45.0% |
| !! | ATAAGGTCTCTAAGGGCACT+TGG | + | Chr8:72436224-72436243 | None:intergenic | 45.0% |
| !! | CTTGGTCTTGTTACCATGAG+TGG | + | Chr8:72436206-72436225 | None:intergenic | 45.0% |
| ACCTGGTACTGCCGGTAATA+GGG | - | Chr8:72436150-72436169 | MsG0880046364.01.T01:intron | 50.0% | |
| ACTGCTCTGTTTCAAGCCCT+TGG | - | Chr8:72435539-72435558 | MsG0880046364.01.T01:three_prime_UTR | 50.0% | |
| CAAGGTGCAGTGTGCATTCA+AGG | - | Chr8:72436071-72436090 | MsG0880046364.01.T01:intron | 50.0% | |
| GCCCAAACTAATTAGGCCCA+TGG | + | Chr8:72436253-72436272 | None:intergenic | 50.0% | |
| GCCCATGGGCCTAATTAGTT+TGG | - | Chr8:72436248-72436267 | MsG0880046364.01.T01:intron | 50.0% | |
| TATTACCGGCAGTACCAGGT+GGG | + | Chr8:72436150-72436169 | None:intergenic | 50.0% | |
| TTGTGCGAGACGGAAACAGA+AGG | - | Chr8:72435912-72435931 | MsG0880046364.01.T01:intron | 50.0% | |
| ! | GCCGGTAATAGGGAGTTTTG+TGG | - | Chr8:72436160-72436179 | MsG0880046364.01.T01:intron | 50.0% |
| ! | TAGGCCCATGGGCTTTGATA+AGG | + | Chr8:72436241-72436260 | None:intergenic | 50.0% |
| CACCTGGTACTGCCGGTAAT+AGG | - | Chr8:72436149-72436168 | MsG0880046364.01.T01:intron | 55.0% | |
| CTATTACCGGCAGTACCAGG+TGG | + | Chr8:72436151-72436170 | None:intergenic | 55.0% | |
| TCCCTATTACCGGCAGTACC+AGG | + | Chr8:72436154-72436173 | None:intergenic | 55.0% | |
| !! | CATGTGGGACTTGCTGTGTG+AGG | - | Chr8:72436113-72436132 | MsG0880046364.01.T01:intron | 55.0% |
| AGGTGCAAGTGTGTCCCACC+TGG | - | Chr8:72436133-72436152 | MsG0880046364.01.T01:intron | 60.0% | |
| CAGACTGTGGAGGGCTATGC+AGG | - | Chr8:72436047-72436066 | MsG0880046364.01.T01:intron | 60.0% | |
| GTGGAGGGCTATGCAGGTCA+AGG | - | Chr8:72436053-72436072 | MsG0880046364.01.T01:intron | 60.0% | |
| TGTGTCCCACCTGGTACTGC+CGG | - | Chr8:72436142-72436161 | MsG0880046364.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 72435376 | 72436594 | 72435376 | ID=MsG0880046364.01;Name=MsG0880046364.01 |
| Chr8 | mRNA | 72435376 | 72436594 | 72435376 | ID=MsG0880046364.01.T01;Parent=MsG0880046364.01;Name=MsG0880046364.01.T01;_AED=0.49;_eAED=0.49;_QI=57|1|1|1|0.66|0.75|4|360|115 |
| Chr8 | exon | 72435376 | 72435920 | 72435376 | ID=MsG0880046364.01.T01:exon:7912;Parent=MsG0880046364.01.T01 |
| Chr8 | exon | 72436020 | 72436062 | 72436020 | ID=MsG0880046364.01.T01:exon:7911;Parent=MsG0880046364.01.T01 |
| Chr8 | exon | 72436183 | 72436245 | 72436183 | ID=MsG0880046364.01.T01:exon:7910;Parent=MsG0880046364.01.T01 |
| Chr8 | exon | 72436481 | 72436594 | 72436481 | ID=MsG0880046364.01.T01:exon:7909;Parent=MsG0880046364.01.T01 |
| Chr8 | five_prime_UTR | 72436538 | 72436594 | 72436538 | ID=MsG0880046364.01.T01:five_prime_utr;Parent=MsG0880046364.01.T01 |
| Chr8 | CDS | 72436481 | 72436537 | 72436481 | ID=MsG0880046364.01.T01:cds;Parent=MsG0880046364.01.T01 |
| Chr8 | CDS | 72436183 | 72436245 | 72436183 | ID=MsG0880046364.01.T01:cds;Parent=MsG0880046364.01.T01 |
| Chr8 | CDS | 72436020 | 72436062 | 72436020 | ID=MsG0880046364.01.T01:cds;Parent=MsG0880046364.01.T01 |
| Chr8 | CDS | 72435736 | 72435920 | 72435736 | ID=MsG0880046364.01.T01:cds;Parent=MsG0880046364.01.T01 |
| Chr8 | three_prime_UTR | 72435376 | 72435735 | 72435376 | ID=MsG0880046364.01.T01:three_prime_utr;Parent=MsG0880046364.01.T01 |
| Gene Sequence |
| Protein sequence |
