AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010355.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010355.01.T01 MTR_2g082640 98.696 230 2 1 1 229 1 230 4.57e-168 462
MsG0280010355.01.T01 MTR_4g081370 78.571 238 41 4 1 229 1 237 2.80e-125 354
MsG0280010355.01.T01 MTR_4g081370 87.634 186 22 1 45 229 8 193 3.79e-114 325
MsG0280010355.01.T01 MTR_2g089000 50.195 257 84 8 9 229 12 260 1.31e-72 222
MsG0280010355.01.T01 MTR_1g043430 52.273 176 80 1 54 229 75 246 6.40e-58 184
MsG0280010355.01.T01 MTR_4g075480 51.515 99 47 1 69 167 6 103 5.07e-23 94.4
MsG0280010355.01.T01 MTR_4g075480 51.515 99 47 1 69 167 34 131 1.31e-22 94.0
MsG0280010355.01.T01 MTR_1g032600 36.806 144 78 3 32 167 36 174 2.04e-19 85.9
MsG0280010355.01.T01 MTR_4g108360 33.898 118 74 2 51 168 35 148 4.47e-13 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010355.01.T01 AT5G54680 69.787 235 64 5 1 229 1 234 2.26e-108 311
MsG0280010355.01.T01 AT1G51070 62.343 239 67 6 1 229 1 226 6.22e-95 277
MsG0280010355.01.T01 AT1G51070 65.829 199 57 4 36 229 100 292 3.20e-84 252
MsG0280010355.01.T01 AT4G14410 52.041 196 77 6 37 229 96 277 2.87e-55 178
MsG0280010355.01.T01 AT4G14410 52.041 196 77 6 37 229 96 277 2.87e-55 178
MsG0280010355.01.T01 AT4G14410 52.041 196 77 6 37 229 102 283 3.25e-55 178
MsG0280010355.01.T01 AT3G23210 52.261 199 87 5 35 229 97 291 5.15e-55 178
MsG0280010355.01.T01 AT3G23210 52.261 199 87 5 35 229 126 320 1.42e-54 177
MsG0280010355.01.T01 AT3G19860 45.299 117 59 2 66 178 2 117 1.27e-22 93.6
MsG0280010355.01.T01 AT3G19860 45.299 117 59 2 66 178 33 148 2.31e-22 93.6
MsG0280010355.01.T01 AT3G19860 45.299 117 59 2 66 178 55 170 2.45e-22 93.6
MsG0280010355.01.T01 AT4G36060 38.971 136 72 5 69 199 26 155 1.34e-18 82.4
MsG0280010355.01.T01 AT4G36060 39.706 136 71 5 69 199 26 155 2.37e-18 81.6
MsG0280010355.01.T01 AT4G36060 38.971 136 72 5 69 199 44 173 4.50e-18 81.3
MsG0280010355.01.T01 AT4G36060 39.706 136 71 5 69 199 44 173 4.87e-18 81.3
MsG0280010355.01.T01 AT3G47640 30.128 156 93 4 73 216 31 182 5.01e-12 63.9
MsG0280010355.01.T01 AT3G47640 30.128 156 93 4 73 216 31 182 5.01e-12 63.9
MsG0280010355.01.T01 AT3G47640 30.128 156 93 4 73 216 31 182 5.01e-12 63.9

Find 95 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAAGATTAAAGAGTTAA+AGG 0.125284 2:+68467369 MsG0280010355.01.T01:CDS
AATTTGAGTCTTTCAACTTT+TGG 0.132451 2:-68467336 None:intergenic
TGAAAGGCATTAACTTGTTT+GGG 0.247330 2:-68467715 None:intergenic
ATGAAAGGCATTAACTTGTT+TGG 0.257284 2:-68467716 None:intergenic
CGTCCACCAGTTGCCTAAAT+TGG 0.259524 2:+68467812 MsG0280010355.01.T01:exon
AATTGTACGGTTGCCAATTT+AGG 0.270365 2:-68467825 None:intergenic
ATTGATAGGTTTGTTGAATT+AGG 0.284956 2:+68467220 MsG0280010355.01.T01:intron
GGGAAAATTCAACCCAACTA+TGG 0.314333 2:+68465769 MsG0280010355.01.T01:exon
CCGGCTTTAATATTTGTTGC+TGG 0.318492 2:+68468019 MsG0280010355.01.T01:three_prime_UTR
CTTGTTTGGCTGTCTTCTTC+CGG 0.325700 2:+68468000 MsG0280010355.01.T01:three_prime_UTR
TAAAAGTTAATAAGCTTGTT+TGG 0.333347 2:+68467986 MsG0280010355.01.T01:three_prime_UTR
ATACATAGTAAATAACTAAA+AGG 0.343916 2:-68467900 None:intergenic
AGGAGGGTGTGTCAAGAAAC+TGG 0.351738 2:-68467657 None:intergenic
ATGTGCTCCTTCCAGCTCTA+AGG 0.373277 2:+68467063 MsG0280010355.01.T01:CDS
GCATTAACTTGTTTGGGGCT+TGG 0.383016 2:-68467709 None:intergenic
CTCTGCTCCTAGTATTGAAA+TGG 0.383024 2:+68466680 MsG0280010355.01.T01:intron
GCAAATGCAGCAGGGATTGC+AGG 0.388118 2:-68467677 None:intergenic
AAGGAGCCATCGACAGAAAC+AGG 0.397378 2:-68465845 None:intergenic
CGGTTGCCAATTTAGGCAAC+TGG 0.406655 2:-68467818 None:intergenic
CCGAATGGTGACACAGTTGC+GGG 0.410732 2:+68467306 MsG0280010355.01.T01:CDS
AAGTTGAAAGACTCAAATTC+AGG 0.412450 2:+68467340 MsG0280010355.01.T01:CDS
TGAAGAAGGACTTGTTTGTT+TGG 0.426217 2:-68465632 None:intergenic
TGTTGAATTAGGCTCCATCT+TGG 0.436518 2:+68467231 MsG0280010355.01.T01:CDS
TAAGGCTGAGAAGGAGAAGT+TGG 0.437128 2:+68467604 MsG0280010355.01.T01:CDS
GAAGGAGAAGTTGGAGCAGC+AGG 0.442475 2:+68467613 MsG0280010355.01.T01:CDS
ATGCCTTTCATGAGTTATCC+AGG 0.449494 2:+68467728 MsG0280010355.01.T01:CDS
AATTGCCACATGGCAACTCC+TGG 0.456430 2:-68467746 None:intergenic
AAAATGAAAACCACGTTTGA+GGG 0.462810 2:-68465603 None:intergenic
CCCGCAACTGTGTCACCATT+CGG 0.471915 2:-68467306 None:intergenic
TGATGAGAAGCAGAGGCTTA+AGG 0.477872 2:+68467586 MsG0280010355.01.T01:CDS
AAATCTCATTTCTTCACCGC+CGG 0.486690 2:+68465728 MsG0280010355.01.T01:five_prime_UTR
TTTCCCCGGAAAACACCAAT+TGG 0.488899 2:+68465792 MsG0280010355.01.T01:CDS
GAGAGAAGTTGCGGAGGGAT+AGG 0.490114 2:+68467092 MsG0280010355.01.T01:CDS
CCTTGATGAGCAAATGCAGC+AGG 0.490383 2:-68467686 None:intergenic
AGTACAGTAACATGTTACTT+TGG 0.496339 2:+68468046 MsG0280010355.01.T01:three_prime_UTR
AGTTACCTCTTCTTCGAACC+AGG 0.496718 2:-68466741 None:intergenic
GAGAGAGTGATGATTGAAGA+AGG 0.496882 2:-68465646 None:intergenic
TTCTTGTTGCAGAGGTAGAT+CGG 0.503971 2:+68467036 MsG0280010355.01.T01:intron
TCCGAATGGTGACACAGTTG+CGG 0.503977 2:+68467305 MsG0280010355.01.T01:CDS
TTAGGCTCCATCTTGGAGCC+TGG 0.505934 2:+68467238 MsG0280010355.01.T01:CDS
TGTGAGGTATCCACGGCGGC+TGG 0.507559 2:-68467776 None:intergenic
GAAATTCCTGTTTCTGTCGA+TGG 0.514909 2:+68465839 MsG0280010355.01.T01:CDS
CAGGAATTTCATCAATCAAA+GGG 0.518186 2:-68465826 None:intergenic
GCCATTGGAGAGTTGAGGTG+GGG 0.518653 2:-68465882 None:intergenic
TTTCCGGGGAAACCATAGTT+GGG 0.520904 2:-68465781 None:intergenic
AGGGTAATCGAAAAGCCAAT+TGG 0.523695 2:-68465807 None:intergenic
CGCCATTGGAGAGTTGAGGT+GGG 0.524275 2:-68465883 None:intergenic
ACAGGAATTTCATCAATCAA+AGG 0.524589 2:-68465827 None:intergenic
AAAGGAAAGAGTGTGGGTAA+AGG 0.526729 2:-68467882 None:intergenic
CTCTCGACATGCCTTAGAGC+TGG 0.527575 2:-68467074 None:intergenic
CAACCCAACTATGGTTTCCC+CGG 0.528497 2:+68465778 MsG0280010355.01.T01:exon
GCAGAGGCTTAAGGCTGAGA+AGG 0.531438 2:+68467595 MsG0280010355.01.T01:CDS
CCTGCTGCATTTGCTCATCA+AGG 0.536277 2:+68467686 MsG0280010355.01.T01:CDS
AATCTCATTTCTTCACCGCC+GGG 0.536866 2:+68465729 MsG0280010355.01.T01:five_prime_UTR
CACCTCAACTCTCCAATGGC+GGG 0.541239 2:+68465885 MsG0280010355.01.T01:CDS
GAGGTATCCACGGCGGCTGG+TGG 0.543817 2:-68467773 None:intergenic
CAAAATCAGATACCCGCCAT+TGG 0.547933 2:-68465897 None:intergenic
GTGTGTCAAGAAACTGGGTT+GGG 0.557971 2:-68467651 None:intergenic
GCTCCATCTTGGAGCCTGGA+AGG 0.560039 2:+68467242 MsG0280010355.01.T01:CDS
AAGAACCTGGTTCGAAGAAG+AGG 0.561194 2:+68466736 MsG0280010355.01.T01:CDS
CCAGCAACAAATATTAAAGC+CGG 0.561728 2:-68468019 None:intergenic
CCGCCATTGGAGAGTTGAGG+TGG 0.568621 2:-68465884 None:intergenic
GAAAGGCATTAACTTGTTTG+GGG 0.569345 2:-68467714 None:intergenic
TAACTAAAAGGAAAGAGTGT+GGG 0.569970 2:-68467888 None:intergenic
CCATTGGAGAGTTGAGGTGG+GGG 0.574009 2:-68465881 None:intergenic
TGGCCTTCCAGGCTCCAAGA+TGG 0.580720 2:-68467245 None:intergenic
ATAACTAAAAGGAAAGAGTG+TGG 0.581462 2:-68467889 None:intergenic
AATGGATGATAGCTCTCTAG+TGG 0.589069 2:+68466698 MsG0280010355.01.T01:CDS
CGACATGCCTTAGAGCTGGA+AGG 0.592843 2:-68467070 None:intergenic
CAATTTAGGCAACTGGTGGA+CGG 0.594311 2:-68467811 None:intergenic
CCACCTCAACTCTCCAATGG+CGG 0.595417 2:+68465884 MsG0280010355.01.T01:CDS
ATTCATGCCACCAGCCGCCG+TGG 0.596384 2:+68467766 MsG0280010355.01.T01:CDS
AGGCATGTCGAGAGAAGTTG+CGG 0.604709 2:+68467083 MsG0280010355.01.T01:CDS
ATGATCTTGTGAGGTATCCA+CGG 0.609314 2:-68467783 None:intergenic
ACTCCTGGATAACTCATGAA+AGG 0.613176 2:-68467731 None:intergenic
TCTGATGGTATCAAAGAACC+TGG 0.613566 2:+68466723 MsG0280010355.01.T01:CDS
TTGCCAATTTAGGCAACTGG+TGG 0.613733 2:-68467815 None:intergenic
TACCCGCCATTGGAGAGTTG+AGG 0.621755 2:-68465887 None:intergenic
AACTTCGTGATGAGAAGCAG+AGG 0.627738 2:+68467579 MsG0280010355.01.T01:CDS
GGTGTGTCAAGAAACTGGGT+TGG 0.631646 2:-68467652 None:intergenic
AGCTCTCTAGTGGATTCTGA+TGG 0.634077 2:+68466708 MsG0280010355.01.T01:CDS
ATGGCTCCTTCGCCTTCACG+TGG 0.638692 2:+68465858 MsG0280010355.01.T01:CDS
CTTGATGAGCAAATGCAGCA+GGG 0.642514 2:-68467685 None:intergenic
AATGCAGCAGGGATTGCAGG+AGG 0.644570 2:-68467674 None:intergenic
ATGCAGCAGGGATTGCAGGA+GGG 0.653807 2:-68467673 None:intergenic
CATGTCGAGAGAAGTTGCGG+AGG 0.656044 2:+68467086 MsG0280010355.01.T01:CDS
ATGTCGAGAGAAGTTGCGGA+GGG 0.659997 2:+68467087 MsG0280010355.01.T01:CDS
TCTGATTGATGCTGTCCGAA+TGG 0.662212 2:+68467291 MsG0280010355.01.T01:CDS
TGGTGGCATGAATTGCCACA+TGG 0.684045 2:-68467756 None:intergenic
GGAGGGTGTGTCAAGAAACT+GGG 0.689856 2:-68467656 None:intergenic
ACGGAGTACATGATCTTGTG+AGG 0.697745 2:-68467792 None:intergenic
AAGGCCACCTAAAACAGACA+AGG 0.714338 2:+68467261 MsG0280010355.01.T01:CDS
CGAATGGTGACACAGTTGCG+GGG 0.732614 2:+68467307 MsG0280010355.01.T01:CDS
GTTATCCAGGAGTTGCCATG+TGG 0.743485 2:+68467741 MsG0280010355.01.T01:CDS
ATCTTGTGAGGTATCCACGG+CGG 0.745646 2:-68467780 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAAATACAAAAATAT+GGG - Chr2:68467021-68467040 None:intergenic 10.0%
!! TTCATTTGATAAAAAAAAAA+TGG + Chr2:68465671-68465690 MsG0280010355.01.T01:five_prime_UTR 10.0%
!! AACTTAGTAAATTAATACTA+TGG - Chr2:68466643-68466662 None:intergenic 15.0%
!! ACTTAGTAAATTAATACTAT+GGG - Chr2:68466642-68466661 None:intergenic 15.0%
!! AGTTAAAGTATAAAAATGAA+GGG - Chr2:68467465-68467484 None:intergenic 15.0%
!! ATACATAGTAAATAACTAAA+AGG - Chr2:68467903-68467922 None:intergenic 15.0%
!! CAAGAAAAAATACAAAAATA+TGG - Chr2:68467022-68467041 None:intergenic 15.0%
!!! AAAGTTTGAATTTTTAAACT+TGG + Chr2:68465994-68466013 MsG0280010355.01.T01:intron 15.0%
!!! AAATGAAATGATTTAGAATA+TGG - Chr2:68467442-68467461 None:intergenic 15.0%
!!! AAGTTTGAATTTTTAAACTT+GGG + Chr2:68465995-68466014 MsG0280010355.01.T01:intron 15.0%
!! CAGTTAAAGTATAAAAATGA+AGG - Chr2:68467466-68467485 None:intergenic 20.0%
!! TATCCACAAATTTGAAAAAA+GGG - Chr2:68465957-68465976 None:intergenic 20.0%
!! TCAATATTCAGTGTTATATA+AGG - Chr2:68467528-68467547 None:intergenic 20.0%
!! TTATCCACAAATTTGAAAAA+AGG - Chr2:68465958-68465977 None:intergenic 20.0%
!!! GTAGTTTTTATAAATTGTTG+TGG + Chr2:68466042-68466061 MsG0280010355.01.T01:intron 20.0%
!!! TAAAAGTTAATAAGCTTGTT+TGG + Chr2:68467986-68468005 MsG0280010355.01.T01:three_prime_UTR 20.0%
! AAACCCTAAATTAAGAAAAG+GGG - Chr2:68465923-68465942 None:intergenic 25.0%
! AATAATAAAAGGCAAGATAG+TGG - Chr2:68467136-68467155 None:intergenic 25.0%
! AGAGAAGATTAAAGAGTTAA+AGG + Chr2:68467369-68467388 MsG0280010355.01.T01:CDS 25.0%
! AGATTAAAGAGTTAAAGGTA+AGG + Chr2:68467374-68467393 MsG0280010355.01.T01:intron 25.0%
! AGTAAATTAATACTATGGGA+TGG - Chr2:68466638-68466657 None:intergenic 25.0%
! ATAATAAAAGGCAAGATAGT+GGG - Chr2:68467135-68467154 None:intergenic 25.0%
! ATCCACAAATTTGAAAAAAG+GGG - Chr2:68465956-68465975 None:intergenic 25.0%
! CTAATATGATTGACATTGAT+AGG + Chr2:68467206-68467225 MsG0280010355.01.T01:intron 25.0%
! CTTGTTTAATGAGAAATGAA+AGG - Chr2:68466778-68466797 None:intergenic 25.0%
! GAAACCCTAAATTAAGAAAA+GGG - Chr2:68465924-68465943 None:intergenic 25.0%
! GTAAATTAATACTATGGGAT+GGG - Chr2:68466637-68466656 None:intergenic 25.0%
! GTAATATAATTGAGGCAAAT+TGG + Chr2:68466878-68466897 MsG0280010355.01.T01:intron 25.0%
! TCTTATAGTATACAAGCAAT+AGG - Chr2:68466989-68467008 None:intergenic 25.0%
! TGAAACCCTAAATTAAGAAA+AGG - Chr2:68465925-68465944 None:intergenic 25.0%
!! AAATTGCTCTAAATCAATTG+AGG - Chr2:68467400-68467419 None:intergenic 25.0%
!! AAATTGTTGTGGTTTTCATT+TGG + Chr2:68466053-68466072 MsG0280010355.01.T01:intron 25.0%
!! AATTTGAGTCTTTCAACTTT+TGG - Chr2:68467339-68467358 None:intergenic 25.0%
!! ATTTGAGTCTTTCAACTTTT+GGG - Chr2:68467338-68467357 None:intergenic 25.0%
!! GACAAGTGTAATTTTTGAAT+TGG + Chr2:68466160-68466179 MsG0280010355.01.T01:intron 25.0%
!! TGTTATGTTTTGTGTACTTA+TGG + Chr2:68466088-68466107 MsG0280010355.01.T01:intron 25.0%
!!! AATTTTCTTTGAGAGATAGA+AGG + Chr2:68467415-68467434 MsG0280010355.01.T01:intron 25.0%
!!! AATTTTTTGGGATTCCATTA+TGG + Chr2:68467844-68467863 MsG0280010355.01.T01:three_prime_UTR 25.0%
!!! ATTGATAGGTTTGTTGAATT+AGG + Chr2:68467220-68467239 MsG0280010355.01.T01:intron 25.0%
AAAAATGAAAACCACGTTTG+AGG - Chr2:68465607-68465626 None:intergenic 30.0%
AAAATGAAAACCACGTTTGA+GGG - Chr2:68465606-68465625 None:intergenic 30.0%
AAACCAAAACCTAAAATCCA+AGG - Chr2:68466577-68466596 None:intergenic 30.0%
AAACCTAAAATCCAAGGTAA+AGG - Chr2:68466571-68466590 None:intergenic 30.0%
AAAGGAATTGCAACAGTAAT+TGG - Chr2:68466553-68466572 None:intergenic 30.0%
AAGAGGAGAGGAATAATAAA+AGG - Chr2:68467147-68467166 None:intergenic 30.0%
AAGGAATTGCAACAGTAATT+GGG - Chr2:68466552-68466571 None:intergenic 30.0%
AAGTTGAAAGACTCAAATTC+AGG + Chr2:68467340-68467359 MsG0280010355.01.T01:CDS 30.0%
AATTGATATGTGTTAAACGC+TGG + Chr2:68466369-68466388 MsG0280010355.01.T01:intron 30.0%
ACAGGAATTTCATCAATCAA+AGG - Chr2:68465830-68465849 None:intergenic 30.0%
ATAACTAAAAGGAAAGAGTG+TGG - Chr2:68467892-68467911 None:intergenic 30.0%
CAGGAATTTCATCAATCAAA+GGG - Chr2:68465829-68465848 None:intergenic 30.0%
CTATCATCCATTTCAATACT+AGG - Chr2:68466690-68466709 None:intergenic 30.0%
TAATAAAAGGCAAGATAGTG+GGG - Chr2:68467134-68467153 None:intergenic 30.0%
TGAATATAATTAGCGATAGC+AGG + Chr2:68466923-68466942 MsG0280010355.01.T01:intron 30.0%
TGGAATCCCAAAAAATTGTA+CGG - Chr2:68467841-68467860 None:intergenic 30.0%
TTGAATTCTATCTACTATGC+AGG + Chr2:68467544-68467563 MsG0280010355.01.T01:intron 30.0%
TTTGTAGTAGAACTTGAACT+AGG + Chr2:68466121-68466140 MsG0280010355.01.T01:intron 30.0%
! AGTACAGTAACATGTTACTT+TGG + Chr2:68468046-68468065 MsG0280010355.01.T01:three_prime_UTR 30.0%
! ATACAACTTTTAGGCCATAA+TGG - Chr2:68467861-68467880 None:intergenic 30.0%
! ATTCCTTTACCTTGGATTTT+AGG + Chr2:68466565-68466584 MsG0280010355.01.T01:intron 30.0%
! GGTAAAGGAATACAACTTTT+AGG - Chr2:68467870-68467889 None:intergenic 30.0%
! GTTTTGTGTACTTATGGTTA+TGG + Chr2:68466094-68466113 MsG0280010355.01.T01:intron 30.0%
! TAACTAAAAGGAAAGAGTGT+GGG - Chr2:68467891-68467910 None:intergenic 30.0%
! TTGCCCCTTTTCTTAATTTA+GGG + Chr2:68465917-68465936 MsG0280010355.01.T01:intron 30.0%
! TTTGCCCCTTTTCTTAATTT+AGG + Chr2:68465916-68465935 MsG0280010355.01.T01:intron 30.0%
! TTTTTATTGATGCCACTGAA+CGG - Chr2:68466951-68466970 None:intergenic 30.0%
!! ATGAAAGGCATTAACTTGTT+TGG - Chr2:68467719-68467738 None:intergenic 30.0%
!! CCTAGTTTTCCATAATACAA+GGG - Chr2:68466467-68466486 None:intergenic 30.0%
!! GCTTTGAGGTAATATAATTG+AGG + Chr2:68466870-68466889 MsG0280010355.01.T01:intron 30.0%
!! TCCTAGTTTTCCATAATACA+AGG - Chr2:68466468-68466487 None:intergenic 30.0%
!! TGAAAGGCATTAACTTGTTT+GGG - Chr2:68467718-68467737 None:intergenic 30.0%
!!! TGTATTTTTTCTTGTTGCAG+AGG + Chr2:68467028-68467047 MsG0280010355.01.T01:intron 30.0%
!!! TTACCTTGGATTTTAGGTTT+TGG + Chr2:68466571-68466590 MsG0280010355.01.T01:intron 30.0%
AATTGTACGGTTGCCAATTT+AGG - Chr2:68467828-68467847 None:intergenic 35.0%
ACAAGCAATAGGATTTGACA+GGG - Chr2:68466978-68466997 None:intergenic 35.0%
AGGAATTGCAACAGTAATTG+GGG - Chr2:68466551-68466570 None:intergenic 35.0%
CCAGCAACAAATATTAAAGC+CGG - Chr2:68468022-68468041 None:intergenic 35.0%
CCCTTGTATTATGGAAAACT+AGG + Chr2:68466464-68466483 MsG0280010355.01.T01:intron 35.0%
GGCAAATTGGCAATTTAACA+TGG + Chr2:68466891-68466910 MsG0280010355.01.T01:intron 35.0%
TACAAGCAATAGGATTTGAC+AGG - Chr2:68466979-68466998 None:intergenic 35.0%
TAGTAGAACTTGAACTAGGA+TGG + Chr2:68466125-68466144 MsG0280010355.01.T01:intron 35.0%
TCAACTAACTTACAGCTTTG+AGG + Chr2:68466856-68466875 MsG0280010355.01.T01:intron 35.0%
TGTTCTTGAATCTTCTGTTC+TGG + Chr2:68466193-68466212 MsG0280010355.01.T01:intron 35.0%
TTGTGTACTTATGGTTATGG+TGG + Chr2:68466097-68466116 MsG0280010355.01.T01:intron 35.0%
! AAAATTGTGAATTTTCCCGG+CGG - Chr2:68465747-68465766 None:intergenic 35.0%
! ATCTTCTGTTCTGGATATGT+TGG + Chr2:68466202-68466221 MsG0280010355.01.T01:intron 35.0%
! CGGAAAATTGTGAATTTTCC+CGG - Chr2:68465750-68465769 None:intergenic 35.0%
! CGGGAAAATTCACAATTTTC+CGG + Chr2:68465748-68465767 MsG0280010355.01.T01:five_prime_UTR 35.0%
! GGGAAAATTCACAATTTTCC+GGG + Chr2:68465749-68465768 MsG0280010355.01.T01:five_prime_UTR 35.0%
! TATTCCTCTCCTCTTTTACT+CGG + Chr2:68467152-68467171 MsG0280010355.01.T01:intron 35.0%
! TGAAGAAGGACTTGTTTGTT+TGG - Chr2:68465635-68465654 None:intergenic 35.0%
!! AAAAGCCAATTGGTGTTTTC+CGG - Chr2:68465800-68465819 None:intergenic 35.0%
!! GAAAGGCATTAACTTGTTTG+GGG - Chr2:68467717-68467736 None:intergenic 35.0%
!!! ATAGTTGGGTTGAATTTTCC+CGG - Chr2:68465770-68465789 None:intergenic 35.0%
!!! TGCCCCTTTTTTCAAATTTG+TGG + Chr2:68465951-68465970 MsG0280010355.01.T01:intron 35.0%
!!! TGGCAACCGTACAATTTTTT+GGG + Chr2:68467832-68467851 MsG0280010355.01.T01:three_prime_UTR 35.0%
!!! TTGGCAACCGTACAATTTTT+TGG + Chr2:68467831-68467850 MsG0280010355.01.T01:three_prime_UTR 35.0%
AAATCTCATTTCTTCACCGC+CGG + Chr2:68465728-68465747 MsG0280010355.01.T01:five_prime_UTR 40.0%
AACCTGCATCCCTTGTATTA+TGG + Chr2:68466455-68466474 MsG0280010355.01.T01:intron 40.0%
AATGGATGATAGCTCTCTAG+TGG + Chr2:68466698-68466717 MsG0280010355.01.T01:CDS 40.0%
ACATACACGAACACAAGACA+CGG + Chr2:68466279-68466298 MsG0280010355.01.T01:intron 40.0%
ACTCCTGGATAACTCATGAA+AGG - Chr2:68467734-68467753 None:intergenic 40.0%
AGGGTAATCGAAAAGCCAAT+TGG - Chr2:68465810-68465829 None:intergenic 40.0%
ATGCCTTTCATGAGTTATCC+AGG + Chr2:68467728-68467747 MsG0280010355.01.T01:CDS 40.0%
CAATTTGCACGAACAGCTTA+AGG - Chr2:68466433-68466452 None:intergenic 40.0%
CTGTTGCAATTCCTTTACCT+TGG + Chr2:68466557-68466576 MsG0280010355.01.T01:intron 40.0%
GAGAGAGTGATGATTGAAGA+AGG - Chr2:68465649-68465668 None:intergenic 40.0%
GAGGGTAGAGAAAAAAAGAG+CGG - Chr2:68465588-68465607 None:intergenic 40.0%
GGGAAAATTCAACCCAACTA+TGG + Chr2:68465769-68465788 MsG0280010355.01.T01:exon 40.0%
TCTGATGGTATCAAAGAACC+TGG + Chr2:68466723-68466742 MsG0280010355.01.T01:CDS 40.0%
TGGGTGTAGACTGTGTATTT+GGG + Chr2:68467175-68467194 MsG0280010355.01.T01:intron 40.0%
TGTTGAATTAGGCTCCATCT+TGG + Chr2:68467231-68467250 MsG0280010355.01.T01:CDS 40.0%
TTCCATAATACAAGGGATGC+AGG - Chr2:68466460-68466479 None:intergenic 40.0%
TTCTTGTTGCAGAGGTAGAT+CGG + Chr2:68467036-68467055 MsG0280010355.01.T01:intron 40.0%
! AAAGGAAAGAGTGTGGGTAA+AGG - Chr2:68467885-68467904 None:intergenic 40.0%
! ATGATCTTGTGAGGTATCCA+CGG - Chr2:68467786-68467805 None:intergenic 40.0%
! ATTGCTGCCTTGTCTGTTTT+AGG - Chr2:68467271-68467290 None:intergenic 40.0%
! CCGGCTTTAATATTTGTTGC+TGG + Chr2:68468019-68468038 MsG0280010355.01.T01:three_prime_UTR 40.0%
! CTCTGCTCCTAGTATTGAAA+TGG + Chr2:68466680-68466699 MsG0280010355.01.T01:intron 40.0%
! TCTGTTCTGGATATGTTGGT+GGG + Chr2:68466206-68466225 MsG0280010355.01.T01:intron 40.0%
! TTCTGTTCTGGATATGTTGG+TGG + Chr2:68466205-68466224 MsG0280010355.01.T01:intron 40.0%
! TTTTTCTCTACCCTCAAACG+TGG + Chr2:68465593-68465612 MsG0280010355.01.T01:five_prime_UTR 40.0%
!! AAAGCCAATTGGTGTTTTCC+GGG - Chr2:68465799-68465818 None:intergenic 40.0%
!! GAAATTCCTGTTTCTGTCGA+TGG + Chr2:68465839-68465858 MsG0280010355.01.T01:CDS 40.0%
AACTTCGTGATGAGAAGCAG+AGG + Chr2:68467579-68467598 MsG0280010355.01.T01:CDS 45.0%
AAGGCCACCTAAAACAGACA+AGG + Chr2:68467261-68467280 MsG0280010355.01.T01:CDS 45.0%
AATCTCATTTCTTCACCGCC+GGG + Chr2:68465729-68465748 MsG0280010355.01.T01:five_prime_UTR 45.0%
ACACAGCATGTGTCAGTGTT+GGG + Chr2:68466346-68466365 MsG0280010355.01.T01:intron 45.0%
ACGGAGTACATGATCTTGTG+AGG - Chr2:68467795-68467814 None:intergenic 45.0%
AGTTACCTCTTCTTCGAACC+AGG - Chr2:68466744-68466763 None:intergenic 45.0%
CAAAATCAGATACCCGCCAT+TGG - Chr2:68465900-68465919 None:intergenic 45.0%
CAATTTAGGCAACTGGTGGA+CGG - Chr2:68467814-68467833 None:intergenic 45.0%
CTTGATGAGCAAATGCAGCA+GGG - Chr2:68467688-68467707 None:intergenic 45.0%
CTTGTTTGGCTGTCTTCTTC+CGG + Chr2:68468000-68468019 MsG0280010355.01.T01:three_prime_UTR 45.0%
GGGTGTAGACTGTGTATTTG+GGG + Chr2:68467176-68467195 MsG0280010355.01.T01:intron 45.0%
GTGGGTGTAGACTGTGTATT+TGG + Chr2:68467174-68467193 MsG0280010355.01.T01:intron 45.0%
GTGTGTCAAGAAACTGGGTT+GGG - Chr2:68467654-68467673 None:intergenic 45.0%
TAAGGCTGAGAAGGAGAAGT+TGG + Chr2:68467604-68467623 MsG0280010355.01.T01:CDS 45.0%
TCTGATTGATGCTGTCCGAA+TGG + Chr2:68467291-68467310 MsG0280010355.01.T01:CDS 45.0%
TGATGAGAAGCAGAGGCTTA+AGG + Chr2:68467586-68467605 MsG0280010355.01.T01:CDS 45.0%
TTGCCAATTTAGGCAACTGG+TGG - Chr2:68467818-68467837 None:intergenic 45.0%
TTTCCCCGGAAAACACCAAT+TGG + Chr2:68465792-68465811 MsG0280010355.01.T01:CDS 45.0%
TTTCCGGGGAAACCATAGTT+GGG - Chr2:68465784-68465803 None:intergenic 45.0%
! AAGAACCTGGTTCGAAGAAG+AGG + Chr2:68466736-68466755 MsG0280010355.01.T01:CDS 45.0%
! CTGAAGTGTCAGTGCTACAT+AGG + Chr2:68466405-68466424 MsG0280010355.01.T01:intron 45.0%
! TTTTCCGGGGAAACCATAGT+TGG - Chr2:68465785-68465804 None:intergenic 45.0%
!! AAGCCAATTGGTGTTTTCCG+GGG - Chr2:68465798-68465817 None:intergenic 45.0%
!! AGCTCTCTAGTGGATTCTGA+TGG + Chr2:68466708-68466727 MsG0280010355.01.T01:CDS 45.0%
!! GCATTAACTTGTTTGGGGCT+TGG - Chr2:68467712-68467731 None:intergenic 45.0%
AAGGAGCCATCGACAGAAAC+AGG - Chr2:68465848-68465867 None:intergenic 50.0%
AATTGCCACATGGCAACTCC+TGG - Chr2:68467749-68467768 None:intergenic 50.0%
AGGCATGTCGAGAGAAGTTG+CGG + Chr2:68467083-68467102 MsG0280010355.01.T01:CDS 50.0%
ATGTCGAGAGAAGTTGCGGA+GGG + Chr2:68467087-68467106 MsG0280010355.01.T01:CDS 50.0%
ATGTGCTCCTTCCAGCTCTA+AGG + Chr2:68467063-68467082 MsG0280010355.01.T01:CDS 50.0%
CAACCCAACTATGGTTTCCC+CGG + Chr2:68465778-68465797 MsG0280010355.01.T01:exon 50.0%
CCTGCTGCATTTGCTCATCA+AGG + Chr2:68467686-68467705 MsG0280010355.01.T01:CDS 50.0%
CCTTGATGAGCAAATGCAGC+AGG - Chr2:68467689-68467708 None:intergenic 50.0%
CGGTTGCCAATTTAGGCAAC+TGG - Chr2:68467821-68467840 None:intergenic 50.0%
CGTCCACCAGTTGCCTAAAT+TGG + Chr2:68467812-68467831 MsG0280010355.01.T01:exon 50.0%
CTACACCCACCGAGTAAAAG+AGG - Chr2:68467164-68467183 None:intergenic 50.0%
GACACAGCATGTGTCAGTGT+TGG + Chr2:68466345-68466364 MsG0280010355.01.T01:intron 50.0%
GGTGTGTCAAGAAACTGGGT+TGG - Chr2:68467655-68467674 None:intergenic 50.0%
GTTATCCAGGAGTTGCCATG+TGG + Chr2:68467741-68467760 MsG0280010355.01.T01:CDS 50.0%
TCCGAATGGTGACACAGTTG+CGG + Chr2:68467305-68467324 MsG0280010355.01.T01:CDS 50.0%
TGGTGGCATGAATTGCCACA+TGG - Chr2:68467759-68467778 None:intergenic 50.0%
! AGGAGGGTGTGTCAAGAAAC+TGG - Chr2:68467660-68467679 None:intergenic 50.0%
! ATCTTGTGAGGTATCCACGG+CGG - Chr2:68467783-68467802 None:intergenic 50.0%
! CCTCTCCTCTTTTACTCGGT+GGG + Chr2:68467156-68467175 MsG0280010355.01.T01:intron 50.0%
! GGAGGGTGTGTCAAGAAACT+GGG - Chr2:68467659-68467678 None:intergenic 50.0%
! TCCTCTCCTCTTTTACTCGG+TGG + Chr2:68467155-68467174 MsG0280010355.01.T01:intron 50.0%
!! GCTGCCTTGTCTGTTTTAGG+TGG - Chr2:68467268-68467287 None:intergenic 50.0%
!! TCTGTTTTAGGTGGCCTTCC+AGG - Chr2:68467259-68467278 None:intergenic 50.0%
AATGCAGCAGGGATTGCAGG+AGG - Chr2:68467677-68467696 None:intergenic 55.0%
ATGCAGCAGGGATTGCAGGA+GGG - Chr2:68467676-68467695 None:intergenic 55.0%
CACCTCAACTCTCCAATGGC+GGG + Chr2:68465885-68465904 MsG0280010355.01.T01:CDS 55.0%
CATGTCGAGAGAAGTTGCGG+AGG + Chr2:68467086-68467105 MsG0280010355.01.T01:CDS 55.0%
CCACCTCAACTCTCCAATGG+CGG + Chr2:68465884-68465903 MsG0280010355.01.T01:CDS 55.0%
CCATTGGAGAGTTGAGGTGG+GGG - Chr2:68465884-68465903 None:intergenic 55.0%
CCCACCGAGTAAAAGAGGAG+AGG - Chr2:68467159-68467178 None:intergenic 55.0%
CCCGCAACTGTGTCACCATT+CGG - Chr2:68467309-68467328 None:intergenic 55.0%
CCGAATGGTGACACAGTTGC+GGG + Chr2:68467306-68467325 MsG0280010355.01.T01:CDS 55.0%
CGAATGGTGACACAGTTGCG+GGG + Chr2:68467307-68467326 MsG0280010355.01.T01:CDS 55.0%
CGACATGCCTTAGAGCTGGA+AGG - Chr2:68467073-68467092 None:intergenic 55.0%
CGCCATTGGAGAGTTGAGGT+GGG - Chr2:68465886-68465905 None:intergenic 55.0%
CTCTCGACATGCCTTAGAGC+TGG - Chr2:68467077-68467096 None:intergenic 55.0%
GAAGGAGAAGTTGGAGCAGC+AGG + Chr2:68467613-68467632 MsG0280010355.01.T01:CDS 55.0%
GAGAGAAGTTGCGGAGGGAT+AGG + Chr2:68467092-68467111 MsG0280010355.01.T01:CDS 55.0%
GCAAATGCAGCAGGGATTGC+AGG - Chr2:68467680-68467699 None:intergenic 55.0%
GCAGAGGCTTAAGGCTGAGA+AGG + Chr2:68467595-68467614 MsG0280010355.01.T01:CDS 55.0%
GCCATTGGAGAGTTGAGGTG+GGG - Chr2:68465885-68465904 None:intergenic 55.0%
TACCCGCCATTGGAGAGTTG+AGG - Chr2:68465890-68465909 None:intergenic 55.0%
TTAGGCTCCATCTTGGAGCC+TGG + Chr2:68467238-68467257 MsG0280010355.01.T01:CDS 55.0%
ATGGCTCCTTCGCCTTCACG+TGG + Chr2:68465858-68465877 MsG0280010355.01.T01:CDS 60.0%
CCCCCACCTCAACTCTCCAA+TGG + Chr2:68465881-68465900 MsG0280010355.01.T01:CDS 60.0%
CCGCCATTGGAGAGTTGAGG+TGG - Chr2:68465887-68465906 None:intergenic 60.0%
CGATAGCAGGCTCCGTTCAG+TGG + Chr2:68466936-68466955 MsG0280010355.01.T01:intron 60.0%
GCTCCATCTTGGAGCCTGGA+AGG + Chr2:68467242-68467261 MsG0280010355.01.T01:CDS 60.0%
TGGCCTTCCAGGCTCCAAGA+TGG - Chr2:68467248-68467267 None:intergenic 60.0%
ATTCATGCCACCAGCCGCCG+TGG + Chr2:68467766-68467785 MsG0280010355.01.T01:CDS 65.0%
TTGAGGTGGGGGCCACGTGA+AGG - Chr2:68465873-68465892 None:intergenic 65.0%
! TGTGAGGTATCCACGGCGGC+TGG - Chr2:68467779-68467798 None:intergenic 65.0%
TGGGGGCCACGTGAAGGCGA+AGG - Chr2:68465867-68465886 None:intergenic 70.0%
! GAGGTATCCACGGCGGCTGG+TGG - Chr2:68467776-68467795 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 68465582 68468172 68465582 ID=MsG0280010355.01;Name=MsG0280010355.01
Chr2 mRNA 68465582 68468172 68465582 ID=MsG0280010355.01.T01;Parent=MsG0280010355.01;Name=MsG0280010355.01.T01;_AED=0.41;_eAED=0.41;_QI=206|1|1|1|1|1|5|343|229
Chr2 exon 68465582 68465906 68465582 ID=MsG0280010355.01.T01:exon:5821;Parent=MsG0280010355.01.T01
Chr2 exon 68466692 68466757 68466692 ID=MsG0280010355.01.T01:exon:5822;Parent=MsG0280010355.01.T01
Chr2 exon 68467048 68467125 68467048 ID=MsG0280010355.01.T01:exon:5823;Parent=MsG0280010355.01.T01
Chr2 exon 68467228 68467390 68467228 ID=MsG0280010355.01.T01:exon:5824;Parent=MsG0280010355.01.T01
Chr2 exon 68467566 68468172 68467566 ID=MsG0280010355.01.T01:exon:5825;Parent=MsG0280010355.01.T01
Chr2 five_prime_UTR 68465582 68465787 68465582 ID=MsG0280010355.01.T01:five_prime_utr;Parent=MsG0280010355.01.T01
Chr2 CDS 68465788 68465906 68465788 ID=MsG0280010355.01.T01:cds;Parent=MsG0280010355.01.T01
Chr2 CDS 68466692 68466757 68466692 ID=MsG0280010355.01.T01:cds;Parent=MsG0280010355.01.T01
Chr2 CDS 68467048 68467125 68467048 ID=MsG0280010355.01.T01:cds;Parent=MsG0280010355.01.T01
Chr2 CDS 68467228 68467390 68467228 ID=MsG0280010355.01.T01:cds;Parent=MsG0280010355.01.T01
Chr2 CDS 68467566 68467829 68467566 ID=MsG0280010355.01.T01:cds;Parent=MsG0280010355.01.T01
Chr2 three_prime_UTR 68467830 68468172 68467830 ID=MsG0280010355.01.T01:three_prime_utr;Parent=MsG0280010355.01.T01
Gene Sequence

>MsG0280010355.01.T01

ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACCCTTTGATTGATGAAATTCCTGTTTCTGTCGATGGCTCCTTCGCCTTCACGTGGCCCCCACCTCAACTCTCCAATGGCGGTATTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCGAAGAAGAGAGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCACCTAAAACAGACAAGGCAGCAATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTTCGTGATGAGAAGCAGAGGCTTAAGGCTGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAACACCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCATCAAGGCCAAGCCCCAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAAGATCATGTACTCCGTCCACCAGTTGCCTAA
Protein sequence

>MsG0280010355.01.T01

MVSPENTNWLFDYPLIDEIPVSVDGSFAFTWPPPQLSNGGIEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPSFLTHPPAIPAAFAHQGQAPNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA*