Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046591.01.T01 | XP_003609073.1 | 76.364 | 220 | 13 | 1 | 35 | 254 | 1 | 181 | 2.71E-113 | 333 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046591.01.T01 | Q9SK27 | 28.495 | 186 | 83 | 5 | 58 | 240 | 23 | 161 | 2.61E-16 | 77.8 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046591.01.T01 | G7JR03 | 76.364 | 220 | 13 | 1 | 35 | 254 | 1 | 181 | 1.29e-113 | 333 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0880046591.01 | MsG0080048781.01 | PPI |
MsG0880046591.01 | MsG0080049140.01 | PPI |
MsG0380017361.01 | MsG0880046591.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046591.01.T01 | MTR_4g111640 | 76.364 | 220 | 13 | 1 | 35 | 254 | 1 | 181 | 3.28e-117 | 333 |
MsG0880046591.01.T01 | MTR_4g077787 | 69.266 | 218 | 26 | 3 | 35 | 251 | 1 | 178 | 6.49e-102 | 294 |
MsG0880046591.01.T01 | MTR_4g112310 | 74.706 | 170 | 4 | 1 | 85 | 254 | 1 | 131 | 2.12e-84 | 248 |
MsG0880046591.01.T01 | MTR_6g022170 | 40.881 | 159 | 52 | 3 | 57 | 213 | 25 | 143 | 3.89e-33 | 118 |
MsG0880046591.01.T01 | MTR_2g101300 | 30.270 | 185 | 85 | 4 | 46 | 228 | 5 | 147 | 8.47e-24 | 95.1 |
MsG0880046591.01.T01 | MTR_3g105930 | 33.846 | 195 | 74 | 7 | 63 | 246 | 24 | 174 | 1.32e-23 | 94.4 |
MsG0880046591.01.T01 | MTR_2g090580 | 31.522 | 184 | 72 | 6 | 65 | 239 | 26 | 164 | 5.26e-21 | 88.2 |
MsG0880046591.01.T01 | MTR_4g078410 | 29.048 | 210 | 86 | 6 | 63 | 253 | 22 | 187 | 1.23e-20 | 86.7 |
MsG0880046591.01.T01 | MTR_2g079030 | 29.744 | 195 | 83 | 4 | 48 | 231 | 7 | 158 | 1.69e-19 | 87.8 |
MsG0880046591.01.T01 | MTR_1g014120 | 29.032 | 186 | 84 | 5 | 41 | 220 | 3 | 146 | 2.11e-18 | 80.5 |
MsG0880046591.01.T01 | MTR_8g463180 | 31.461 | 178 | 74 | 4 | 45 | 220 | 6 | 137 | 4.96e-18 | 82.0 |
MsG0880046591.01.T01 | MTR_8g086360 | 28.877 | 187 | 84 | 5 | 42 | 226 | 3 | 142 | 1.12e-17 | 79.0 |
MsG0880046591.01.T01 | MTR_8g095013 | 29.193 | 161 | 67 | 4 | 46 | 204 | 8 | 123 | 6.39e-17 | 79.0 |
MsG0880046591.01.T01 | MTR_7g090170 | 30.168 | 179 | 58 | 8 | 63 | 233 | 24 | 143 | 2.89e-13 | 65.9 |
MsG0880046591.01.T01 | MTR_4g081100 | 28.369 | 141 | 62 | 3 | 65 | 205 | 31 | 132 | 3.57e-13 | 67.4 |
MsG0880046591.01.T01 | MTR_2g090575 | 27.273 | 165 | 72 | 4 | 46 | 208 | 8 | 126 | 5.29e-13 | 68.2 |
MsG0880046591.01.T01 | MTR_1g077790 | 27.778 | 144 | 62 | 3 | 63 | 204 | 26 | 129 | 1.00e-12 | 65.5 |
MsG0880046591.01.T01 | MTR_4g124280 | 29.412 | 187 | 66 | 6 | 66 | 230 | 25 | 167 | 2.64e-12 | 65.1 |
MsG0880046591.01.T01 | MTR_1g090420 | 25.967 | 181 | 93 | 3 | 45 | 224 | 7 | 147 | 1.46e-11 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880046591.01.T01 | AT1G48940 | 38.498 | 213 | 74 | 4 | 45 | 246 | 10 | 176 | 9.69e-44 | 146 |
MsG0880046591.01.T01 | AT3G18590 | 45.912 | 159 | 44 | 2 | 50 | 205 | 8 | 127 | 3.02e-43 | 145 |
MsG0880046591.01.T01 | AT5G14345 | 32.759 | 174 | 72 | 3 | 46 | 219 | 1 | 129 | 1.81e-27 | 103 |
MsG0880046591.01.T01 | AT1G79800 | 32.515 | 163 | 70 | 2 | 46 | 208 | 14 | 136 | 1.98e-24 | 97.1 |
MsG0880046591.01.T01 | AT4G28365 | 31.148 | 183 | 76 | 4 | 46 | 221 | 9 | 148 | 4.37e-23 | 93.6 |
MsG0880046591.01.T01 | AT5G53870 | 30.806 | 211 | 91 | 6 | 35 | 237 | 1 | 164 | 4.54e-21 | 91.3 |
MsG0880046591.01.T01 | AT5G53870 | 30.047 | 213 | 90 | 6 | 35 | 237 | 1 | 164 | 6.22e-21 | 90.9 |
MsG0880046591.01.T01 | AT4G31840 | 30.769 | 182 | 79 | 5 | 46 | 224 | 10 | 147 | 1.02e-20 | 86.7 |
MsG0880046591.01.T01 | AT4G32490 | 29.480 | 173 | 75 | 4 | 46 | 214 | 9 | 138 | 1.41e-18 | 82.0 |
MsG0880046591.01.T01 | AT2G25060 | 28.495 | 186 | 83 | 5 | 58 | 240 | 23 | 161 | 2.66e-17 | 77.8 |
MsG0880046591.01.T01 | AT5G57920 | 31.098 | 164 | 68 | 6 | 59 | 216 | 13 | 137 | 4.09e-16 | 74.3 |
MsG0880046591.01.T01 | AT5G57920 | 30.769 | 156 | 65 | 5 | 65 | 216 | 54 | 170 | 1.07e-15 | 73.9 |
MsG0880046591.01.T01 | AT5G57920 | 31.690 | 142 | 57 | 4 | 65 | 205 | 22 | 124 | 1.70e-15 | 72.8 |
MsG0880046591.01.T01 | AT4G30590 | 28.834 | 163 | 75 | 5 | 45 | 205 | 6 | 129 | 9.79e-15 | 70.9 |
MsG0880046591.01.T01 | AT5G25090 | 31.373 | 153 | 62 | 6 | 58 | 206 | 15 | 128 | 2.25e-13 | 67.0 |
MsG0880046591.01.T01 | AT1G64640 | 23.295 | 176 | 95 | 2 | 46 | 221 | 13 | 148 | 2.34e-13 | 67.0 |
MsG0880046591.01.T01 | AT2G23990 | 29.630 | 162 | 84 | 7 | 68 | 224 | 29 | 165 | 5.83e-13 | 66.6 |
MsG0880046591.01.T01 | AT2G32300 | 24.309 | 181 | 91 | 5 | 47 | 224 | 6 | 143 | 7.59e-12 | 63.9 |
MsG0880046591.01.T01 | AT2G32300 | 24.309 | 181 | 91 | 5 | 47 | 224 | 36 | 173 | 8.85e-12 | 64.3 |
MsG0880046591.01.T01 | AT2G31050 | 27.374 | 179 | 82 | 4 | 37 | 213 | 2 | 134 | 1.32e-11 | 62.4 |
Find 40 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAAGATGGCAGCCATATT+TGG | 0.225096 | 8:+75233333 | MsG0880046590.01.T01:CDS |
TTTGAAGTTGGTGGTAAAAT+TGG | 0.248593 | 8:-75233234 | MsG0880046591.01.T01:CDS |
TCATCACCGTCCTTTGAGTT+AGG | 0.280268 | 8:+75233201 | MsG0880046590.01.T01:intron |
CTCTTTGCTTTGTCATTCCT+TGG | 0.289880 | 8:-75232115 | MsG0880046591.01.T01:CDS |
ACCTATAGAAAATCCAAATA+TGG | 0.293080 | 8:-75233346 | MsG0880046591.01.T01:CDS |
GGTGAGGGTGCTGTTGGTTC+AGG | 0.348949 | 8:+75232217 | MsG0880046590.01.T01:intron |
TACTTCATTAGTGGTGTTAG+TGG | 0.359912 | 8:-75232289 | MsG0880046591.01.T01:CDS |
GTGAATGCTGTGATAGTAAT+AGG | 0.385754 | 8:+75232139 | MsG0880046590.01.T01:intron |
GTGATGAAATGTACAACAAA+TGG | 0.397031 | 8:-75233185 | MsG0880046591.01.T01:CDS |
ACAAAAGTTATATAACAAAA+AGG | 0.418940 | 8:+75232460 | MsG0880046590.01.T01:intron |
GGATTGTTCTACTTCATTAG+TGG | 0.430222 | 8:-75232298 | MsG0880046591.01.T01:CDS |
CATCACCGTCCTTTGAGTTA+GGG | 0.439255 | 8:+75233202 | MsG0880046590.01.T01:intron |
TTCTATAGGTAGGTCTAGAA+TGG | 0.441041 | 8:+75233359 | MsG0880046590.01.T01:CDS |
GCAGCTTTAGAATGTGCTAT+TGG | 0.459227 | 8:+75232172 | MsG0880046590.01.T01:intron |
TCGACTCGTCCACTCTTCTT+CGG | 0.480946 | 8:-75232358 | MsG0880046591.01.T01:CDS |
GCAAAGGAAAAGTGGGTATG+AGG | 0.483957 | 8:+75233305 | MsG0880046590.01.T01:CDS |
TGATGAAATGTACAACAAAT+GGG | 0.488287 | 8:-75233184 | MsG0880046591.01.T01:CDS |
AGTTGGTGGTAAAATTGGTT+GGG | 0.488516 | 8:-75233229 | MsG0880046591.01.T01:CDS |
GCATTCTCATTTGCAGATTG+TGG | 0.492826 | 8:+75232196 | MsG0880046590.01.T01:intron |
AGGTCTAGAATGGTTAACTT+TGG | 0.497403 | 8:+75233369 | MsG0880046590.01.T01:CDS |
GATTGTGGTGAGGGTGCTGT+TGG | 0.512152 | 8:+75232211 | MsG0880046590.01.T01:intron |
AATTGTACTGAATTTGAAGT+TGG | 0.513642 | 8:-75233246 | MsG0880046591.01.T01:CDS |
TCATTTGCAGATTGTGGTGA+GGG | 0.517209 | 8:+75232202 | MsG0880046590.01.T01:intron |
CCATTGTTTCCGAAGAAGAG+TGG | 0.518696 | 8:+75232349 | MsG0880046590.01.T01:intron |
ATAATCAAGCAAAGGAAAAG+TGG | 0.519598 | 8:+75233297 | MsG0880046590.01.T01:CDS |
CTCATTTGCAGATTGTGGTG+AGG | 0.521847 | 8:+75232201 | MsG0880046590.01.T01:intron |
TGTACTGAATTTGAAGTTGG+TGG | 0.533474 | 8:-75233243 | MsG0880046591.01.T01:CDS |
CTAATGAAGTAGAACAATCC+TGG | 0.545709 | 8:+75232301 | MsG0880046590.01.T01:intron |
AAGTTGGTGGTAAAATTGGT+TGG | 0.549766 | 8:-75233230 | MsG0880046591.01.T01:CDS |
TAATCAAGCAAAGGAAAAGT+GGG | 0.571116 | 8:+75233298 | MsG0880046590.01.T01:CDS |
CCACTCTTCTTCGGAAACAA+TGG | 0.572032 | 8:-75232349 | MsG0880046591.01.T01:CDS |
CGAGAAAGATTCAGTGATGG+TGG | 0.591369 | 8:-75232410 | MsG0880046591.01.T01:CDS |
TGGTGGTAAAATTGGTTGGG+TGG | 0.599284 | 8:-75233226 | MsG0880046591.01.T01:CDS |
GTTAGTGGTCATTGTACAAG+AGG | 0.601760 | 8:-75232274 | MsG0880046591.01.T01:CDS |
GTATGAGGAAGCTTTGAAGA+TGG | 0.616797 | 8:+75233320 | MsG0880046590.01.T01:CDS |
CAAACAAAATAATCAAGCAA+AGG | 0.622930 | 8:+75233289 | MsG0880046590.01.T01:CDS |
TTGGGTGGTCCCTAACTCAA+AGG | 0.623070 | 8:-75233211 | MsG0880046591.01.T01:CDS |
TTCAAGCATAAATCATGCCA+AGG | 0.629433 | 8:+75232098 | MsG0880046590.01.T01:intron |
GTACGAGAAAGATTCAGTGA+TGG | 0.658831 | 8:-75232413 | MsG0880046591.01.T01:CDS |
GTGGTCCCTAACTCAAAGGA+CGG | 0.675841 | 8:-75233207 | MsG0880046591.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATGATATATTTTATTTTTA+AGG | - | Chr8:75232815-75232834 | MsG0880046591.01.T01:intron | 10.0% |
!! | AATACACACATATTTAAAAA+TGG | + | Chr8:75232875-75232894 | MsG0880046590.01.T01:intron | 15.0% |
!! | ACAAAAGTTATATAACAAAA+AGG | + | Chr8:75233071-75233090 | MsG0880046590.01.T01:intron | 15.0% |
!! | AGAAAAGATGTATAATAAAT+AGG | - | Chr8:75232597-75232616 | MsG0880046591.01.T01:intron | 15.0% |
!! | ATGTAAAGAAATAATTAATG+TGG | - | Chr8:75232626-75232645 | MsG0880046591.01.T01:intron | 15.0% |
!! | GAAAAGATGTATAATAAATA+GGG | - | Chr8:75232598-75232617 | MsG0880046591.01.T01:intron | 15.0% |
!! | TTTAAAAATGGTAACATAAA+TGG | + | Chr8:75232863-75232882 | MsG0880046590.01.T01:intron | 15.0% |
!!! | ATCACAAATTTTTTAGAAAA+TGG | + | Chr8:75232940-75232959 | MsG0880046590.01.T01:intron | 15.0% |
!! | AAAAAAATTAATCTTTGTCG+TGG | - | Chr8:75233044-75233063 | MsG0880046591.01.T01:intron | 20.0% |
!! | AAAGAAATAATTAATGTGGT+TGG | - | Chr8:75232630-75232649 | MsG0880046591.01.T01:intron | 20.0% |
!! | GGTAGTATCTTAAATTAAAT+CGG | + | Chr8:75232422-75232441 | MsG0880046590.01.T01:intron | 20.0% |
!!! | ATCAATTTTGAATCTGTTTT+GGG | + | Chr8:75232373-75232392 | MsG0880046590.01.T01:intron | 20.0% |
!!! | ATCTTCATTTCTAAAAAGAA+AGG | - | Chr8:75232759-75232778 | MsG0880046591.01.T01:intron | 20.0% |
!!! | TAACTTTTGTTTTGAACTTT+TGG | - | Chr8:75233081-75233100 | MsG0880046591.01.T01:intron | 20.0% |
! | ACCTATAGAAAATCCAAATA+TGG | - | Chr8:75232182-75232201 | MsG0880046591.01.T01:CDS | 25.0% |
! | CAAACAAAATAATCAAGCAA+AGG | + | Chr8:75232242-75232261 | MsG0880046590.01.T01:intron | 25.0% |
! | GGACAAAAAAATTTCTCAAA+AGG | - | Chr8:75232678-75232697 | MsG0880046591.01.T01:intron | 25.0% |
! | TAAATTAAATCGGTAAGAAG+TGG | + | Chr8:75232412-75232431 | MsG0880046590.01.T01:intron | 25.0% |
! | TGATGAAATGTACAACAAAT+GGG | - | Chr8:75232344-75232363 | MsG0880046591.01.T01:CDS | 25.0% |
!! | AAAAATGATCATCAAGGTTT+TGG | - | Chr8:75233280-75233299 | MsG0880046591.01.T01:CDS | 25.0% |
!! | AATTGTACTGAATTTGAAGT+TGG | - | Chr8:75232282-75232301 | MsG0880046591.01.T01:CDS | 25.0% |
!! | ACAATTGATGACCAAAAATT+GGG | + | Chr8:75232268-75232287 | MsG0880046590.01.T01:intron | 25.0% |
!! | ATATCAATTACCAAAGCATT+GGG | + | Chr8:75232903-75232922 | MsG0880046590.01.T01:intron | 25.0% |
!! | CATCAATTTTGAATCTGTTT+TGG | + | Chr8:75232374-75232393 | MsG0880046590.01.T01:intron | 25.0% |
!! | CTCAAAAGGTCTTATAATTA+GGG | - | Chr8:75232692-75232711 | MsG0880046591.01.T01:intron | 25.0% |
!! | TACAATTGATGACCAAAAAT+TGG | + | Chr8:75232269-75232288 | MsG0880046590.01.T01:intron | 25.0% |
!! | TATTTGGATTTTCTATAGGT+AGG | + | Chr8:75232182-75232201 | MsG0880046590.01.T01:intron | 25.0% |
!! | TCTCAAAAGGTCTTATAATT+AGG | - | Chr8:75232691-75232710 | MsG0880046591.01.T01:intron | 25.0% |
!!! | ACAATTTTATCCTTTAAGAG+AGG | - | Chr8:75232535-75232554 | MsG0880046591.01.T01:CDS | 25.0% |
!!! | ATTCCCGTTATTTTTTCAAA+AGG | + | Chr8:75232465-75232484 | MsG0880046590.01.T01:intron | 25.0% |
!!! | CAATTTTATCCTTTAAGAGA+GGG | - | Chr8:75232536-75232555 | MsG0880046591.01.T01:CDS | 25.0% |
!!! | TTCCCGTTATTTTTTCAAAA+GGG | + | Chr8:75232464-75232483 | MsG0880046590.01.T01:intron | 25.0% |
AGGACAAAAAATGATCATCA+AGG | - | Chr8:75233274-75233293 | MsG0880046591.01.T01:CDS | 30.0% | |
ATAATCAAGCAAAGGAAAAG+TGG | + | Chr8:75232234-75232253 | MsG0880046590.01.T01:intron | 30.0% | |
GATATCAATTACCAAAGCAT+TGG | + | Chr8:75232904-75232923 | MsG0880046590.01.T01:intron | 30.0% | |
GATGTTTACTACAAAAGTCT+AGG | - | Chr8:75232784-75232803 | MsG0880046591.01.T01:intron | 30.0% | |
GTATTTATATCCCAATGCTT+TGG | - | Chr8:75232890-75232909 | MsG0880046591.01.T01:intron | 30.0% | |
GTGATGAAATGTACAACAAA+TGG | - | Chr8:75232343-75232362 | MsG0880046591.01.T01:CDS | 30.0% | |
TAATCAAGCAAAGGAAAAGT+GGG | + | Chr8:75232233-75232252 | MsG0880046590.01.T01:intron | 30.0% | |
! | AAAGGTCTTATAATTAGGGA+CGG | - | Chr8:75232696-75232715 | MsG0880046591.01.T01:intron | 30.0% |
! | AATAACGGGAATTAAGATAG+TGG | - | Chr8:75232473-75232492 | MsG0880046591.01.T01:CDS | 30.0% |
! | GCCATATTTGGATTTTCTAT+AGG | + | Chr8:75232186-75232205 | MsG0880046590.01.T01:intron | 30.0% |
!! | TTTGAAGTTGGTGGTAAAAT+TGG | - | Chr8:75232294-75232313 | MsG0880046591.01.T01:CDS | 30.0% |
AATGTGGTTGGAAATAGCAA+AGG | - | Chr8:75232642-75232661 | MsG0880046591.01.T01:intron | 35.0% | |
ATGTGGTTGGAAATAGCAAA+GGG | - | Chr8:75232643-75232662 | MsG0880046591.01.T01:intron | 35.0% | |
CATAAACAACCCTCTCTTAA+AGG | + | Chr8:75232548-75232567 | MsG0880046590.01.T01:intron | 35.0% | |
CTAATGAAGTAGAACAATCC+TGG | + | Chr8:75233230-75233249 | MsG0880046590.01.T01:CDS | 35.0% | |
GGATTGTTCTACTTCATTAG+TGG | - | Chr8:75233230-75233249 | MsG0880046591.01.T01:CDS | 35.0% | |
GTGAATGCTGTGATAGTAAT+AGG | + | Chr8:75233392-75233411 | MsG0880046590.01.T01:CDS | 35.0% | |
TCAAAAGGGCCCTATAATTA+GGG | + | Chr8:75232450-75232469 | MsG0880046590.01.T01:intron | 35.0% | |
TTCAAAAGGGCCCTATAATT+AGG | + | Chr8:75232451-75232470 | MsG0880046590.01.T01:intron | 35.0% | |
TTCTATAGGTAGGTCTAGAA+TGG | + | Chr8:75232172-75232191 | MsG0880046590.01.T01:intron | 35.0% | |
! | AGCAAAGGGGTCTTATAAAA+GGG | - | Chr8:75232657-75232676 | MsG0880046591.01.T01:intron | 35.0% |
! | AGGTCTAGAATGGTTAACTT+TGG | + | Chr8:75232162-75232181 | MsG0880046590.01.T01:intron | 35.0% |
! | ATTGATGACCAAAAATTGGG+AGG | + | Chr8:75232265-75232284 | MsG0880046590.01.T01:intron | 35.0% |
! | GTTTTCAAATTTGAACGACC+AGG | - | Chr8:75233209-75233228 | MsG0880046591.01.T01:CDS | 35.0% |
! | TACTTCATTAGTGGTGTTAG+TGG | - | Chr8:75233239-75233258 | MsG0880046591.01.T01:CDS | 35.0% |
! | TAGCAAAGGGGTCTTATAAA+AGG | - | Chr8:75232656-75232675 | MsG0880046591.01.T01:intron | 35.0% |
! | TGTACTGAATTTGAAGTTGG+TGG | - | Chr8:75232285-75232304 | MsG0880046591.01.T01:CDS | 35.0% |
! | TTTGTTTGCCTCCCAATTTT+TGG | - | Chr8:75232254-75232273 | MsG0880046591.01.T01:CDS | 35.0% |
!! | AAGTTGGTGGTAAAATTGGT+TGG | - | Chr8:75232298-75232317 | MsG0880046591.01.T01:CDS | 35.0% |
!! | AGAGTTTGTTAGCGAAAAAG+AGG | + | Chr8:75232110-75232129 | MsG0880046590.01.T01:intron | 35.0% |
!! | AGTTGGTGGTAAAATTGGTT+GGG | - | Chr8:75232299-75232318 | MsG0880046591.01.T01:CDS | 35.0% |
!! | GAGTTTGTTAGCGAAAAAGA+GGG | + | Chr8:75232109-75232128 | MsG0880046590.01.T01:intron | 35.0% |
!! | GGCCCTTTTGAAAAAATAAC+GGG | - | Chr8:75232459-75232478 | MsG0880046591.01.T01:CDS | 35.0% |
!! | GGGCCCTTTTGAAAAAATAA+CGG | - | Chr8:75232458-75232477 | MsG0880046591.01.T01:CDS | 35.0% |
CTCTTTGCTTTGTCATTCCT+TGG | - | Chr8:75233413-75233432 | MsG0880046591.01.T01:CDS | 40.0% | |
GCATTCTCATTTGCAGATTG+TGG | + | Chr8:75233335-75233354 | MsG0880046590.01.T01:CDS | 40.0% | |
GTACGAGAAAGATTCAGTGA+TGG | - | Chr8:75233115-75233134 | MsG0880046591.01.T01:intron | 40.0% | |
GTTAGTGGTCATTGTACAAG+AGG | - | Chr8:75233254-75233273 | MsG0880046591.01.T01:CDS | 40.0% | |
TACCTCCGTCCCTAATTATA+GGG | - | Chr8:75232438-75232457 | MsG0880046591.01.T01:CDS | 40.0% | |
TCATTTGCAGATTGTGGTGA+GGG | + | Chr8:75233329-75233348 | MsG0880046590.01.T01:CDS | 40.0% | |
TGTGGTTGGAAATAGCAAAG+GGG | - | Chr8:75232644-75232663 | MsG0880046591.01.T01:intron | 40.0% | |
TTGAAGATGGCAGCCATATT+TGG | + | Chr8:75232198-75232217 | MsG0880046590.01.T01:intron | 40.0% | |
!! | GCAGCTTTAGAATGTGCTAT+TGG | + | Chr8:75233359-75233378 | MsG0880046590.01.T01:CDS | 40.0% |
!! | GTATGAGGAAGCTTTGAAGA+TGG | + | Chr8:75232211-75232230 | MsG0880046590.01.T01:intron | 40.0% |
AAGGGCCCTATAATTAGGGA+CGG | + | Chr8:75232446-75232465 | MsG0880046590.01.T01:intron | 45.0% | |
CCACTCTTCTTCGGAAACAA+TGG | - | Chr8:75233179-75233198 | MsG0880046591.01.T01:CDS | 45.0% | |
CCATTGTTTCCGAAGAAGAG+TGG | + | Chr8:75233182-75233201 | MsG0880046590.01.T01:intron | 45.0% | |
CGAGAAAGATTCAGTGATGG+TGG | - | Chr8:75233118-75233137 | MsG0880046591.01.T01:intron | 45.0% | |
CTACCTCCGTCCCTAATTAT+AGG | - | Chr8:75232437-75232456 | MsG0880046591.01.T01:CDS | 45.0% | |
CTCATTTGCAGATTGTGGTG+AGG | + | Chr8:75233330-75233349 | MsG0880046590.01.T01:CDS | 45.0% | |
GCAAAGGAAAAGTGGGTATG+AGG | + | Chr8:75232226-75232245 | MsG0880046590.01.T01:intron | 45.0% | |
TGGTGGTAAAATTGGTTGGG+TGG | - | Chr8:75232302-75232321 | MsG0880046591.01.T01:CDS | 45.0% | |
! | CATCACCGTCCTTTGAGTTA+GGG | + | Chr8:75232329-75232348 | MsG0880046590.01.T01:intron | 45.0% |
! | GGTCTTATAATTAGGGACGG+AGG | - | Chr8:75232699-75232718 | MsG0880046591.01.T01:intron | 45.0% |
! | TCATCACCGTCCTTTGAGTT+AGG | + | Chr8:75232330-75232349 | MsG0880046590.01.T01:intron | 45.0% |
!!! | ATGATATATTTTATTTTTAA+GGG | - | Chr8:75232816-75232835 | MsG0880046591.01.T01:intron | 5.0% |
GTGGTCCCTAACTCAAAGGA+CGG | - | Chr8:75232321-75232340 | MsG0880046591.01.T01:CDS | 50.0% | |
TTGGGTGGTCCCTAACTCAA+AGG | - | Chr8:75232317-75232336 | MsG0880046591.01.T01:CDS | 50.0% | |
! | TCGACTCGTCCACTCTTCTT+CGG | - | Chr8:75233170-75233189 | MsG0880046591.01.T01:CDS | 50.0% |
GGCCCTATAATTAGGGACGG+AGG | + | Chr8:75232443-75232462 | MsG0880046590.01.T01:intron | 55.0% | |
!! | GATTGTGGTGAGGGTGCTGT+TGG | + | Chr8:75233320-75233339 | MsG0880046590.01.T01:CDS | 55.0% |
!! | GGTGAGGGTGCTGTTGGTTC+AGG | + | Chr8:75233314-75233333 | MsG0880046590.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 75232099 | 75233451 | 75232099 | ID=MsG0880046591.01;Name=MsG0880046591.01 |
Chr8 | mRNA | 75232099 | 75233451 | 75232099 | ID=MsG0880046591.01.T01;Parent=MsG0880046591.01;Name=MsG0880046591.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|0|0|2|0|254 |
Chr8 | exon | 75233149 | 75233451 | 75233149 | ID=MsG0880046591.01.T01:exon:31546;Parent=MsG0880046591.01.T01 |
Chr8 | exon | 75232099 | 75232560 | 75232099 | ID=MsG0880046591.01.T01:exon:31545;Parent=MsG0880046591.01.T01 |
Chr8 | CDS | 75233149 | 75233451 | 75233149 | ID=MsG0880046591.01.T01:cds;Parent=MsG0880046591.01.T01 |
Chr8 | CDS | 75232099 | 75232560 | 75232099 | ID=MsG0880046591.01.T01:cds;Parent=MsG0880046591.01.T01 |
Gene Sequence |
Protein sequence |