AlfalfaGEDB | MsG0380017361.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017361.01

KEGG: -
GO: GO:0009055
PFAM: PF02298

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017361.01.T01	XP_003603289.1	77.528	178	7	1	1	145	1	178	1.56E-72	225

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017361.01.T01	Q9SK27	40.994	161	63	2	11	139	15	175	2.16E-34	121

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017361.01.T01	G7J9U0	77.528	178	7	1	1	145	1	178	7.45e-73	225

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0380017361.01	0.804099	2.541139e-49	1.298884e-46
MsG0080048258.01	MsG0380017361.01	0.825367	4.871804e-54	4.431486e-51
MsG0080048311.01	MsG0380017361.01	0.859234	4.762696e-63	1.249016e-59
MsG0080048775.01	MsG0380017361.01	0.852360	4.858321e-61	1.012641e-57
MsG0080048781.01	MsG0380017361.01	0.944008	4.280590e-103	5.981630e-98
MsG0080049140.01	MsG0380017361.01	0.850652	1.478407e-60	2.916359e-57
MsG0180000076.01	MsG0380017361.01	0.828865	7.087723e-55	7.132306e-52
MsG0180000111.01	MsG0380017361.01	0.838591	2.626514e-57	3.534466e-54
MsG0180000373.01	MsG0380017361.01	0.816073	6.672207e-52	4.681063e-49
MsG0180001293.01	MsG0380017361.01	0.843155	1.667717e-58	2.585742e-55

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PPI

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Gene1	Gene2	Type
MsG0380017361.01	MsG0080048266.01	PPI
MsG0380017361.01	MsG0880046591.01	PPI
MsG0380017361.01	MsG0880046648.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017361.01.T01	MTR_3g105930	77.528	178	7	1	1	145	1	178	1.89e-76	225
MsG0380017361.01.T01	MTR_7g090170	73.649	148	23	3	1	132	1	148	2.85e-52	163
MsG0380017361.01.T01	MTR_1g014120	69.474	95	28	1	7	100	4	98	5.12e-43	141
MsG0380017361.01.T01	MTR_4g081100	52.874	87	40	1	11	97	16	101	1.45e-24	94.7
MsG0380017361.01.T01	MTR_8g463180	45.055	91	43	3	12	98	5	92	1.47e-19	83.2
MsG0380017361.01.T01	MTR_2g083250	48.235	85	41	3	24	106	23	106	1.73e-17	77.0
MsG0380017361.01.T01	MTR_4g078410	53.333	75	32	2	24	98	22	93	2.92e-17	75.1
MsG0380017361.01.T01	MTR_4g077787	42.308	104	50	4	1	97	1	101	5.26e-17	74.3
MsG0380017361.01.T01	MTR_2g079030	48.276	87	42	2	12	98	10	93	4.33e-16	74.7
MsG0380017361.01.T01	MTR_2g090575	43.820	89	44	3	12	97	7	92	9.70e-16	73.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017361.01.T01	AT4G31840	42.373	177	64	4	8	147	2	177	3.21e-37	126
MsG0380017361.01.T01	AT2G25060	40.994	161	63	2	11	139	15	175	2.21e-35	121
MsG0380017361.01.T01	AT5G25090	55.208	96	42	1	6	100	4	99	2.71e-33	116
MsG0380017361.01.T01	AT4G30590	57.609	92	34	1	12	98	8	99	1.48e-32	114
MsG0380017361.01.T01	AT2G23990	46.000	100	54	0	1	100	1	100	4.26e-26	98.6
MsG0380017361.01.T01	AT5G57920	52.632	76	36	0	22	97	18	93	2.52e-25	95.9
MsG0380017361.01.T01	AT5G57920	52.632	76	36	0	22	97	50	125	2.89e-25	96.7
MsG0380017361.01.T01	AT5G57920	52.703	74	35	0	24	97	19	92	9.74e-25	94.4
MsG0380017361.01.T01	AT2G23990	38.655	119	54	1	1	100	1	119	1.05e-21	87.4
MsG0380017361.01.T01	AT3G20570	40.698	86	49	2	12	97	15	98	6.58e-17	74.3

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Find 41 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCGGCGCACTGCTAGT+TGG	0.529681	3:+95329513	None:intergenic
AACTCTGCTGGAGATGGTGC+AGG	0.510903	3:+95329558	None:intergenic
AACTGGACTTGTGACTGTTC+TGG	0.274010	3:-95329487	MsG0380017361.01.T01:CDS
AACTTCACTATATCCTAATT+AGG	0.307719	3:+95329421	None:intergenic
AAGCAGACTCACTCAACCAA+TGG	0.548958	3:-95329941	MsG0380017361.01.T01:CDS
ACAAGTCCAGTTCGCAACAC+CGG	0.589779	3:+95329498	None:intergenic
ACTGGACTTGTGACTGTTCT+GGG	0.401738	3:-95329486	MsG0380017361.01.T01:CDS
AGCAGACTCACTCAACCAAT+GGG	0.514967	3:-95329940	MsG0380017361.01.T01:CDS
AGGCAAGATAGATGCATGGA+AGG	0.615286	3:-95329976	MsG0380017361.01.T01:CDS
AGTGAGTCTGCTTCAGATGA+TGG	0.493397	3:+95329951	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTCCAAACTGCAAAACAA+AGG	+	Chr3:95329695-95329714	None:intergenic	30.0%
CATCATTGTAATGTTCAATG+GGG	+	Chr3:95329785-95329804	None:intergenic	30.0%
CCATCATTGTAATGTTCAAT+GGG	+	Chr3:95329786-95329805	None:intergenic	30.0%
CCATTGAACATTACAATGAT+GGG	-	Chr3:95329784-95329803	MsG0380017361.01.T01:CDS	30.0%
TTTGCAGTTTGGAAATATGA+TGG	-	Chr3:95329699-95329718	MsG0380017361.01.T01:intron	30.0%
AGAAAAAGATGTGTCAGTGA+TGG	+	Chr3:95329669-95329688	None:intergenic	35.0%
CAGTTTGGAAATATGATGGT+GGG	-	Chr3:95329703-95329722	MsG0380017361.01.T01:CDS	35.0%
CCCATCATTGTAATGTTCAA+TGG	+	Chr3:95329787-95329806	None:intergenic	35.0%
CCCATTGAACATTACAATGA+TGG	-	Chr3:95329783-95329802	MsG0380017361.01.T01:CDS	35.0%
GAAAAGTCTCGTTTCAAAGT+CGG	-	Chr3:95329578-95329597	MsG0380017361.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	95329428	95330087	95329428	ID=MsG0380017361.01;Name=MsG0380017361.01
Chr3	mRNA	95329428	95330087	95329428	ID=MsG0380017361.01.T01;Parent=MsG0380017361.01;Name=MsG0380017361.01.T01;_AED=0.50;_eAED=0.53;_QI=0\|0\|0\|1\|1\|1\|3\|0\|155
Chr3	exon	95329904	95330087	95329904	ID=MsG0380017361.01.T01:exon:1652;Parent=MsG0380017361.01.T01
Chr3	exon	95329700	95329809	95329700	ID=MsG0380017361.01.T01:exon:1651;Parent=MsG0380017361.01.T01
Chr3	exon	95329428	95329601	95329428	ID=MsG0380017361.01.T01:exon:1650;Parent=MsG0380017361.01.T01
Chr3	CDS	95329904	95330087	95329904	ID=MsG0380017361.01.T01:cds;Parent=MsG0380017361.01.T01
Chr3	CDS	95329700	95329809	95329700	ID=MsG0380017361.01.T01:cds;Parent=MsG0380017361.01.T01
Chr3	CDS	95329428	95329601	95329428	ID=MsG0380017361.01.T01:cds;Parent=MsG0380017361.01.T01

Gene Sequence

>MsG0380017361.01.T01

ATGGCTGTGTTCTCAAGAACTGCTTCTGCTTCTCTATTGTTCTTGTTCCTTCTCTTTGGTTTCTCTGCAGCTAAGGAACTATTGGTCGGAGGCAAGATAGATGCATGGAAGGTTCCATCATCTGAAGCAGACTCACTCAACCAATGGGCAGAAAAGTCTCGTTTCAAAGTCGGCGATCATCTTGTTTGGAAATATGATGGTGGGAAAGACTCAGTTTTGCAAGTAAACAAAGAAGATTATGCTAATTGCAACAGCTCAAACCCCATTGAACATTACAATGATGGGAACACGAAGAAAAGATCCATTGGAGTTTCACCTGCACCATCTCCAGCAGAGTTGGAAGAAGGTCCAGCTGTTGCACCAACTAGCAGTGCGCCGGTGTTGCGAACTGGACTTGTGACTGTTCTGGGACTGTTGGCTTTTATGTGGGTTTTCTCATATGAATCACCGCACCTAATTAGGATATAG

Protein sequence

>MsG0380017361.01.T01

MAVFSRTASASLLFLFLLFGFSAAKELLVGGKIDAWKVPSSEADSLNQWAEKSRFKVGDHLVWKYDGGKDSVLQVNKEDYANCNSSNPIEHYNDGNTKKRSIGVSPAPSPAELEEGPAVAPTSSAPVLRTGLVTVLGLLAFMWVFSYESPHLIRI*