AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049140.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049140.01.T01 MTR_1g014120 94.652 187 7 1 1 187 1 184 1.70e-108 308
MsG0080049140.01.T01 MTR_3g105930 64.474 152 47 3 25 176 24 168 7.48e-64 195
MsG0080049140.01.T01 MTR_7g090170 56.757 148 40 4 25 172 24 147 1.24e-49 157
MsG0080049140.01.T01 MTR_8g463180 46.281 121 62 2 12 132 8 125 1.57e-35 126
MsG0080049140.01.T01 MTR_2g079030 42.763 152 83 3 10 161 8 155 1.23e-34 128
MsG0080049140.01.T01 MTR_4g081100 49.541 109 54 1 24 132 28 135 3.80e-34 120
MsG0080049140.01.T01 MTR_6g022170 48.182 110 54 2 21 129 26 133 1.69e-31 112
MsG0080049140.01.T01 MTR_2g090580 38.286 175 88 4 30 187 29 200 2.00e-29 108
MsG0080049140.01.T01 MTR_4g078410 44.615 130 68 3 25 153 22 148 2.60e-29 107
MsG0080049140.01.T01 MTR_2g090575 41.818 165 77 7 11 163 11 168 2.85e-29 111
MsG0080049140.01.T01 MTR_2g101300 39.726 146 75 6 19 162 18 152 4.10e-28 104
MsG0080049140.01.T01 MTR_4g111640 41.176 119 61 4 16 132 24 135 8.62e-27 100
MsG0080049140.01.T01 MTR_4g124280 45.455 99 54 0 32 130 28 126 9.38e-27 102
MsG0080049140.01.T01 MTR_4g077787 36.913 149 81 5 1 143 1 142 1.33e-26 100
MsG0080049140.01.T01 MTR_2g083250 41.818 110 61 3 25 132 23 131 6.98e-26 100
MsG0080049140.01.T01 MTR_8g086360 36.813 182 102 5 7 178 3 181 1.17e-25 98.2
MsG0080049140.01.T01 MTR_4g130780 38.095 126 76 1 5 128 4 129 1.71e-24 94.7
MsG0080049140.01.T01 MTR_8g094990 36.686 169 91 4 12 167 8 173 3.45e-24 96.3
MsG0080049140.01.T01 MTR_4g112310 44.706 85 45 1 48 132 3 85 3.42e-23 90.1
MsG0080049140.01.T01 MTR_2g088990 37.342 158 89 5 12 168 8 156 6.64e-23 91.7
MsG0080049140.01.T01 MTR_4g130800 38.281 128 73 3 7 129 4 130 8.50e-23 92.4
MsG0080049140.01.T01 MTR_8g095013 42.373 118 63 3 11 128 11 123 1.07e-22 92.8
MsG0080049140.01.T01 MTR_1g077790 39.796 98 58 1 32 128 32 129 3.52e-22 89.0
MsG0080049140.01.T01 MTR_4g130800 42.202 109 61 2 22 129 22 129 3.83e-22 90.5
MsG0080049140.01.T01 MTR_5g006040 26.705 176 121 3 12 187 11 178 8.92e-22 87.8
MsG0080049140.01.T01 MTR_8g095020 40.625 128 63 5 30 148 27 150 2.71e-21 89.0
MsG0080049140.01.T01 MTR_3g092170 35.220 159 85 3 12 163 8 155 3.34e-21 88.2
MsG0080049140.01.T01 MTR_4g114870 32.738 168 92 2 32 178 194 361 4.53e-20 86.7
MsG0080049140.01.T01 MTR_4g114870 31.852 135 89 2 12 146 13 144 1.43e-17 79.3
MsG0080049140.01.T01 MTR_1g104800 35.833 120 75 1 49 166 43 162 1.73e-18 79.3
MsG0080049140.01.T01 MTR_6g083240 33.083 133 81 4 37 165 35 163 6.28e-17 74.7
MsG0080049140.01.T01 MTR_6g080660 33.333 114 69 3 17 130 18 124 2.01e-16 74.3
MsG0080049140.01.T01 MTR_0334s0010 37.500 120 64 4 17 128 9 125 2.04e-16 73.9
MsG0080049140.01.T01 MTR_4g114830 34.375 96 61 2 25 118 25 120 3.10e-16 72.8
MsG0080049140.01.T01 MTR_8g007020 36.719 128 72 4 5 130 2 122 5.00e-16 72.8
MsG0080049140.01.T01 MTR_1g090190 31.613 155 93 6 32 184 26 169 6.78e-16 72.0
MsG0080049140.01.T01 MTR_8g099220 32.500 120 76 2 13 128 9 127 1.09e-15 70.5
MsG0080049140.01.T01 MTR_8g007035 35.938 128 73 4 5 130 2 122 2.82e-15 70.9
MsG0080049140.01.T01 MTR_4g067200 27.869 122 77 3 17 128 9 129 2.59e-14 67.8
MsG0080049140.01.T01 MTR_4g066110 27.869 122 77 3 17 128 9 129 2.59e-14 67.8
MsG0080049140.01.T01 MTR_7g086100 33.333 126 75 3 13 134 7 127 8.13e-14 67.8
MsG0080049140.01.T01 MTR_2g025580 34.426 122 65 3 44 164 39 146 8.16e-14 66.6
MsG0080049140.01.T01 MTR_6g023760 36.735 98 56 4 32 128 29 121 5.91e-13 64.3
MsG0080049140.01.T01 MTR_3g099540 39.506 81 48 1 48 128 42 121 8.50e-13 62.8
MsG0080049140.01.T01 MTR_8g089110 32.759 116 74 2 11 126 7 118 1.29e-12 62.0
MsG0080049140.01.T01 MTR_3g099580 40.741 81 47 1 48 128 41 120 1.44e-12 63.5
MsG0080049140.01.T01 MTR_7g086090 33.058 121 72 3 12 128 6 121 1.82e-12 63.9
MsG0080049140.01.T01 MTR_7g086280 30.952 126 78 3 13 134 7 127 3.02e-12 62.4
MsG0080049140.01.T01 MTR_6g013420 31.343 134 77 5 7 131 10 137 3.11e-12 62.4
MsG0080049140.01.T01 MTR_3g099570 39.506 81 48 1 48 128 41 120 3.67e-12 62.4
MsG0080049140.01.T01 MTR_1g112700 22.995 187 121 5 1 182 1 169 3.74e-12 62.4
MsG0080049140.01.T01 MTR_1g090420 27.152 151 104 3 15 161 15 163 5.67e-12 62.4
MsG0080049140.01.T01 MTR_7g086230 30.159 126 79 3 13 134 7 127 7.86e-12 61.2
MsG0080049140.01.T01 MTR_3g099980 37.634 93 53 2 37 128 34 122 2.54e-11 60.5
MsG0080049140.01.T01 MTR_3g099680 37.634 93 53 2 37 128 34 122 7.95e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049140.01.T01 AT4G31840 50.000 176 77 3 12 187 11 175 2.87e-57 178
MsG0080049140.01.T01 AT2G25060 50.286 175 75 5 11 184 15 178 6.73e-55 172
MsG0080049140.01.T01 AT5G25090 53.279 122 57 0 11 132 9 130 4.02e-47 152
MsG0080049140.01.T01 AT4G30590 53.600 125 54 1 12 132 8 132 2.03e-45 148
MsG0080049140.01.T01 AT5G57920 44.079 152 82 3 26 177 53 201 1.10e-43 145
MsG0080049140.01.T01 AT5G57920 44.079 152 82 3 26 177 21 169 1.14e-43 144
MsG0080049140.01.T01 AT5G57920 44.079 152 82 3 26 177 20 168 1.24e-43 144
MsG0080049140.01.T01 AT2G23990 51.773 141 55 3 14 150 10 141 6.53e-42 140
MsG0080049140.01.T01 AT2G23990 45.625 160 55 4 14 150 10 160 3.25e-37 129
MsG0080049140.01.T01 AT3G20570 41.104 163 82 5 12 164 15 173 2.08e-35 123
MsG0080049140.01.T01 AT5G14345 57.143 91 37 1 40 130 28 116 2.71e-31 111
MsG0080049140.01.T01 AT5G53870 40.252 159 84 5 10 161 9 163 1.87e-29 111
MsG0080049140.01.T01 AT5G53870 40.252 159 84 5 10 161 9 163 2.45e-29 111
MsG0080049140.01.T01 AT4G28365 39.506 162 89 6 13 168 11 169 1.14e-28 106
MsG0080049140.01.T01 AT3G18590 45.833 120 59 4 12 129 12 127 1.66e-28 105
MsG0080049140.01.T01 AT4G27520 44.628 121 63 3 12 132 16 132 3.04e-28 108
MsG0080049140.01.T01 AT4G32490 34.857 175 85 5 13 166 11 177 2.95e-25 97.8
MsG0080049140.01.T01 AT1G48940 38.889 126 69 3 13 132 6 129 2.99e-25 96.7
MsG0080049140.01.T01 AT1G79800 34.459 148 85 4 8 147 8 151 6.20e-22 88.6
MsG0080049140.01.T01 AT2G31050 36.296 135 80 3 11 145 12 140 1.67e-21 87.4
MsG0080049140.01.T01 AT1G64640 35.897 117 74 1 32 148 36 151 2.01e-21 87.0
MsG0080049140.01.T01 AT2G26720 33.094 139 85 3 11 149 12 142 9.91e-20 82.8
MsG0080049140.01.T01 AT2G32300 35.714 140 74 5 25 160 23 150 5.51e-19 82.0
MsG0080049140.01.T01 AT2G32300 35.714 140 74 5 25 160 53 180 1.77e-18 81.3
MsG0080049140.01.T01 AT5G20230 34.426 122 76 3 26 145 23 142 5.45e-17 75.5
MsG0080049140.01.T01 AT5G26330 37.500 80 50 0 50 129 43 122 2.74e-16 73.6
MsG0080049140.01.T01 AT5G07475 28.571 182 117 6 12 187 10 184 1.65e-15 71.6
MsG0080049140.01.T01 AT3G60270 36.364 99 58 2 32 130 29 122 2.47e-14 68.2
MsG0080049140.01.T01 AT1G72230 31.967 122 72 2 48 159 38 158 3.52e-13 65.1
MsG0080049140.01.T01 AT1G45063 31.933 119 75 3 12 129 14 127 2.12e-12 64.3
MsG0080049140.01.T01 AT1G45063 31.933 119 75 3 12 129 14 127 2.94e-12 64.3
MsG0080049140.01.T01 AT3G27200 29.839 124 76 3 11 129 5 122 3.02e-12 62.4

Find 52 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATCATCTTGTTCTCTTT+TGG 0.177913 contig92end:+37683 MsG0080049140.01.T01:CDS
GCAGAAATTATGGATGATTT+TGG 0.191043 contig92end:-37580 None:intergenic
TCTTAAAGATGCAGAAATTA+TGG 0.244416 contig92end:-37590 None:intergenic
CTGTGGTTGTCATGAGTCTA+AGG 0.276529 contig92end:+38411 MsG0080049140.01.T01:CDS
CCCATCATTGTAGTGTTTGA+TGG 0.297797 contig92end:-38303 None:intergenic
TGAATATCCAAACTAAAATA+AGG 0.318116 contig92end:-38611 None:intergenic
TTCATAATATTAGTATTATT+AGG 0.321476 contig92end:+38630 MsG0080049140.01.T01:three_prime_UTR
TCTCCACTGATGTAGTAGTA+TGG 0.331847 contig92end:-38356 None:intergenic
AAAGTGAGATTTGATCATTC+TGG 0.347650 contig92end:+38332 MsG0080049140.01.T01:CDS
AGTATTATTAGGATTAAGAT+TGG 0.382883 contig92end:+38641 MsG0080049140.01.T01:three_prime_UTR
AATCTGATTCTCTCAACAAA+TGG 0.402045 contig92end:+37793 MsG0080049140.01.T01:CDS
GGAGCAACAGCTGAGCCAGC+TGG 0.404423 contig92end:-38494 None:intergenic
CTACTACATCAGTGGAGAAA+AGG 0.404851 contig92end:+38361 MsG0080049140.01.T01:CDS
CCCATCAAACACTACAATGA+TGG 0.417208 contig92end:+38302 MsG0080049140.01.T01:CDS
CCATCATTGTAGTGTTTGAT+GGG 0.419117 contig92end:-38302 None:intergenic
TGCATGGAAGGTTCCTTCTT+CGG 0.420616 contig92end:+37770 MsG0080049140.01.T01:CDS
CCTTCACCAGCTGAAGTTGA+TGG 0.422615 contig92end:+38470 MsG0080049140.01.T01:CDS
GCAAGGTGGTGGTGTATTTG+TGG 0.435276 contig92end:+38544 MsG0080049140.01.T01:CDS
AAAAGTGAAAATTACTTAGA+TGG 0.435763 contig92end:-37845 None:intergenic
ATTAGGATTAAGATTGGGAT+TGG 0.437592 contig92end:+38647 MsG0080049140.01.T01:three_prime_UTR
ACAAATGGGCTTCAAGTGTT+CGG 0.440098 contig92end:+37808 MsG0080049140.01.T01:CDS
AAAACAGTTGCACCACTTGT+TGG 0.440200 contig92end:-38521 None:intergenic
GCAGCTAAGGATATCTTGCT+TGG 0.450579 contig92end:+37735 MsG0080049140.01.T01:CDS
TACTACATCAGTGGAGAAAA+GGG 0.477152 contig92end:+38362 MsG0080049140.01.T01:CDS
ATCTGATTCTCTCAACAAAT+GGG 0.481996 contig92end:+37794 MsG0080049140.01.T01:CDS
TGTGGTTGTCATGAGTCTAA+GGG 0.500303 contig92end:+38412 MsG0080049140.01.T01:CDS
GTTGCACCACTTGTTGGAGC+TGG 0.502974 contig92end:-38515 None:intergenic
GTATTATTAGGATTAAGATT+GGG 0.509185 contig92end:+38642 MsG0080049140.01.T01:three_prime_UTR
AGAGAATCAGATTCCGAAGA+AGG 0.516269 contig92end:-37783 None:intergenic
ACTTCAGCTGGTGAAGGTGC+TGG 0.517037 contig92end:-38464 None:intergenic
CCATCAAACACTACAATGAT+GGG 0.517725 contig92end:+38303 MsG0080049140.01.T01:CDS
GCTGAAGTTGATGGTCCAGC+TGG 0.527675 contig92end:+38479 MsG0080049140.01.T01:CDS
GCTGGACCATCAACTTCAGC+TGG 0.530028 contig92end:-38476 None:intergenic
TCAAGTGTTCGGTTTCAAGT+TGG 0.534785 contig92end:+37819 MsG0080049140.01.T01:CDS
TCAGTTTGGAAATATGAAGC+TGG 0.536642 contig92end:+38221 MsG0080049140.01.T01:intron
GAAAAGGGTCACTGTGAGAA+GGG 0.555253 contig92end:+38377 MsG0080049140.01.T01:CDS
GTGGTTGTCATGAGTCTAAG+GGG 0.573266 contig92end:+38413 MsG0080049140.01.T01:CDS
AGAAAAGGGTCACTGTGAGA+AGG 0.575414 contig92end:+38376 MsG0080049140.01.T01:CDS
CCATCAACTTCAGCTGGTGA+AGG 0.581807 contig92end:-38470 None:intergenic
GGTGGTGTATTTGTGGCTGT+AGG 0.582095 contig92end:+38551 MsG0080049140.01.T01:CDS
GTTGCTCCAGCTCCAACAAG+TGG 0.607631 contig92end:+38509 MsG0080049140.01.T01:CDS
ATATTAAAATTTGAAAGACA+AGG 0.615670 contig92end:-38732 None:intergenic
GCTAAGGATATCTTGCTTGG+TGG 0.617121 contig92end:+37738 MsG0080049140.01.T01:CDS
GGTCCATACTACTACATCAG+TGG 0.620422 contig92end:+38353 MsG0080049140.01.T01:CDS
TGGCAAAACTGATGCATGGA+AGG 0.623442 contig92end:+37758 MsG0080049140.01.T01:CDS
TGGTTGTCATGAGTCTAAGG+GGG 0.630347 contig92end:+38414 MsG0080049140.01.T01:CDS
TAGGAGTGTTTGTTGCCATG+TGG 0.640277 contig92end:+38570 MsG0080049140.01.T01:CDS
TTGGTGGCAAAACTGATGCA+TGG 0.676457 contig92end:+37754 MsG0080049140.01.T01:CDS
TTCAAATCAGAAAAGCCACA+TGG 0.691376 contig92end:-38585 None:intergenic
GGTTGTCATGAGTCTAAGGG+GGG 0.691450 contig92end:+38415 MsG0080049140.01.T01:CDS
GTTGTCATGAGTCTAAGGGG+GGG 0.700416 contig92end:+38416 MsG0080049140.01.T01:CDS
GAAGGGTCAGAAGCTTACTG+TGG 0.745278 contig92end:+38394 MsG0080049140.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCATAATATTAGTATTATT+AGG + contig92end:38630-38649 MsG0080049140.01.T01:three_prime_UTR 10.0%
!! ATATTAAAATTTGAAAGACA+AGG - contig92end:38735-38754 None:intergenic 15.0%
!! CATCACATAAAAATAAAAAT+TGG - contig92end:38155-38174 None:intergenic 15.0%
!!! AATATAAAAAAATTGGGTTT+TGG - contig92end:38075-38094 None:intergenic 15.0%
!!! ACAATAAAGAAACAATTTTA+AGG - contig92end:37990-38009 None:intergenic 15.0%
!!! TGAATTTTTACTGATAATTA+AGG - contig92end:37926-37945 None:intergenic 15.0%
!!! TGAATTTTTAGTGATAAAAA+AGG - contig92end:37884-37903 None:intergenic 15.0%
!! AAAAGTGAAAATTACTTAGA+TGG - contig92end:37848-37867 None:intergenic 20.0%
!! AGTATTATTAGGATTAAGAT+TGG + contig92end:38641-38660 MsG0080049140.01.T01:three_prime_UTR 20.0%
!! GGTGGAAATATAAAAAAATT+GGG - contig92end:38081-38100 None:intergenic 20.0%
!! GTATTATTAGGATTAAGATT+GGG + contig92end:38642-38661 MsG0080049140.01.T01:three_prime_UTR 20.0%
!! TGAATATCCAAACTAAAATA+AGG - contig92end:38614-38633 None:intergenic 20.0%
!! TGGTGGAAATATAAAAAAAT+TGG - contig92end:38082-38101 None:intergenic 20.0%
!!! TTTTTACATTTTCATCATCT+TGG + contig92end:38038-38057 MsG0080049140.01.T01:intron 20.0%
! ATGAACAATAAAGTAGTTAG+TGG - contig92end:38191-38210 None:intergenic 25.0%
! TCTTAAAGATGCAGAAATTA+TGG - contig92end:37593-37612 None:intergenic 25.0%
! TTGAAAACAAAATACCAAGA+TGG - contig92end:38102-38121 None:intergenic 25.0%
!! TTTTTATATTTCCACCATCT+TGG + contig92end:38085-38104 MsG0080049140.01.T01:intron 25.0%
!!! TCATATTTTTGTTCTCAGTT+TGG + contig92end:38207-38226 MsG0080049140.01.T01:intron 25.0%
!!! TGAATTGCCTTATTTTAGTT+TGG + contig92end:38604-38623 MsG0080049140.01.T01:three_prime_UTR 25.0%
AAAACAAAATACCAAGATGG+TGG - contig92end:38099-38118 None:intergenic 30.0%
AAAGTGAGATTTGATCATTC+TGG + contig92end:38332-38351 MsG0080049140.01.T01:CDS 30.0%
AATCTGATTCTCTCAACAAA+TGG + contig92end:37793-37812 MsG0080049140.01.T01:CDS 30.0%
ATCTGATTCTCTCAACAAAT+GGG + contig92end:37794-37813 MsG0080049140.01.T01:CDS 30.0%
ATTAGGATTAAGATTGGGAT+TGG + contig92end:38647-38666 MsG0080049140.01.T01:three_prime_UTR 30.0%
CAACATTTGCAGAAAAACAA+TGG + contig92end:37647-37666 MsG0080049140.01.T01:exon 30.0%
! GCAGAAATTATGGATGATTT+TGG - contig92end:37583-37602 None:intergenic 30.0%
! TTCATCATCTTGTTCTCTTT+TGG + contig92end:37683-37702 MsG0080049140.01.T01:CDS 30.0%
!! TTGGTTCTTTTTGTTCTCTT+TGG + contig92end:37702-37721 MsG0080049140.01.T01:CDS 30.0%
ATTTGCAGAAAAACAATGGC+TGG + contig92end:37651-37670 MsG0080049140.01.T01:exon 35.0%
CCATCAAACACTACAATGAT+GGG + contig92end:38303-38322 MsG0080049140.01.T01:CDS 35.0%
CCATCATTGTAGTGTTTGAT+GGG - contig92end:38305-38324 None:intergenic 35.0%
TACTACATCAGTGGAGAAAA+GGG + contig92end:38362-38381 MsG0080049140.01.T01:CDS 35.0%
TCAGTTTGGAAATATGAAGC+TGG + contig92end:38221-38240 MsG0080049140.01.T01:intron 35.0%
TTCAAATCAGAAAAGCCACA+TGG - contig92end:38588-38607 None:intergenic 35.0%
! TTCTGTTTTGCAAGTGAGTA+AGG + contig92end:38250-38269 MsG0080049140.01.T01:CDS 35.0%
AAAACAGTTGCACCACTTGT+TGG - contig92end:38524-38543 None:intergenic 40.0%
AGAGAATCAGATTCCGAAGA+AGG - contig92end:37786-37805 None:intergenic 40.0%
CCCATCAAACACTACAATGA+TGG + contig92end:38302-38321 MsG0080049140.01.T01:CDS 40.0%
CCCATCATTGTAGTGTTTGA+TGG - contig92end:38306-38325 None:intergenic 40.0%
CTACTACATCAGTGGAGAAA+AGG + contig92end:38361-38380 MsG0080049140.01.T01:CDS 40.0%
GCTGGTGAAAAAGCAACAAT+GGG - contig92end:38449-38468 None:intergenic 40.0%
TCTCCACTGATGTAGTAGTA+TGG - contig92end:38359-38378 None:intergenic 40.0%
TGCTGGTGAAAAAGCAACAA+TGG - contig92end:38450-38469 None:intergenic 40.0%
TGTGGTTGTCATGAGTCTAA+GGG + contig92end:38412-38431 MsG0080049140.01.T01:CDS 40.0%
! ACAAATGGGCTTCAAGTGTT+CGG + contig92end:37808-37827 MsG0080049140.01.T01:CDS 40.0%
! TCAAGTGTTCGGTTTCAAGT+TGG + contig92end:37819-37838 MsG0080049140.01.T01:CDS 40.0%
!!! GTAGTGTTTGATGGGTTTTG+AGG - contig92end:38297-38316 None:intergenic 40.0%
AGAAAAGGGTCACTGTGAGA+AGG + contig92end:38376-38395 MsG0080049140.01.T01:CDS 45.0%
CTGTGGTTGTCATGAGTCTA+AGG + contig92end:38411-38430 MsG0080049140.01.T01:CDS 45.0%
GAAAAGGGTCACTGTGAGAA+GGG + contig92end:38377-38396 MsG0080049140.01.T01:CDS 45.0%
GCAGCTAAGGATATCTTGCT+TGG + contig92end:37735-37754 MsG0080049140.01.T01:CDS 45.0%
GCTAAGGATATCTTGCTTGG+TGG + contig92end:37738-37757 MsG0080049140.01.T01:CDS 45.0%
GGTCCATACTACTACATCAG+TGG + contig92end:38353-38372 MsG0080049140.01.T01:CDS 45.0%
GTGGTTGTCATGAGTCTAAG+GGG + contig92end:38413-38432 MsG0080049140.01.T01:CDS 45.0%
TGCATGGAAGGTTCCTTCTT+CGG + contig92end:37770-37789 MsG0080049140.01.T01:CDS 45.0%
TGGCAAAACTGATGCATGGA+AGG + contig92end:37758-37777 MsG0080049140.01.T01:CDS 45.0%
TGGTTGTCATGAGTCTAAGG+GGG + contig92end:38414-38433 MsG0080049140.01.T01:CDS 45.0%
! AGTGGTGCAACTGTTTTGCA+AGG + contig92end:38527-38546 MsG0080049140.01.T01:CDS 45.0%
! TGGTTGTGCTTTTGCAGCTA+AGG + contig92end:37722-37741 MsG0080049140.01.T01:CDS 45.0%
! TTGGTGGCAAAACTGATGCA+TGG + contig92end:37754-37773 MsG0080049140.01.T01:CDS 45.0%
!! TAGGAGTGTTTGTTGCCATG+TGG + contig92end:38570-38589 MsG0080049140.01.T01:CDS 45.0%
CCATCAACTTCAGCTGGTGA+AGG - contig92end:38473-38492 None:intergenic 50.0%
CCTTCACCAGCTGAAGTTGA+TGG + contig92end:38470-38489 MsG0080049140.01.T01:CDS 50.0%
GAAGGGTCAGAAGCTTACTG+TGG + contig92end:38394-38413 MsG0080049140.01.T01:CDS 50.0%
GGTGGTGTATTTGTGGCTGT+AGG + contig92end:38551-38570 MsG0080049140.01.T01:CDS 50.0%
GGTTGTCATGAGTCTAAGGG+GGG + contig92end:38415-38434 MsG0080049140.01.T01:CDS 50.0%
GTTGTCATGAGTCTAAGGGG+GGG + contig92end:38416-38435 MsG0080049140.01.T01:CDS 50.0%
! GCAACTGTTTTGCAAGGTGG+TGG + contig92end:38533-38552 MsG0080049140.01.T01:CDS 50.0%
! GCAAGGTGGTGGTGTATTTG+TGG + contig92end:38544-38563 MsG0080049140.01.T01:CDS 50.0%
! GGTGCAACTGTTTTGCAAGG+TGG + contig92end:38530-38549 MsG0080049140.01.T01:CDS 50.0%
GCTGGACCATCAACTTCAGC+TGG - contig92end:38479-38498 None:intergenic 55.0%
GTTGCTCCAGCTCCAACAAG+TGG + contig92end:38509-38528 MsG0080049140.01.T01:CDS 55.0%
TGAGTCTAAGGGGGGGAAGT+AGG + contig92end:38423-38442 MsG0080049140.01.T01:CDS 55.0%
! ACTTCAGCTGGTGAAGGTGC+TGG - contig92end:38467-38486 None:intergenic 55.0%
! GTTGCACCACTTGTTGGAGC+TGG - contig92end:38518-38537 None:intergenic 55.0%
!! GCTGAAGTTGATGGTCCAGC+TGG + contig92end:38479-38498 MsG0080049140.01.T01:CDS 55.0%
GGAGCAACAGCTGAGCCAGC+TGG - contig92end:38497-38516 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
contig92end gene 37577 38764 37577 ID=MsG0080049140.01;Name=MsG0080049140.01
contig92end mRNA 37577 38764 37577 ID=MsG0080049140.01.T01;Parent=MsG0080049140.01;Name=MsG0080049140.01.T01;_AED=0.26;_eAED=0.26;_QI=89|1|1|1|1|1|2|163|187
contig92end exon 37577 37852 37577 ID=MsG0080049140.01.T01:exon:126;Parent=MsG0080049140.01.T01
contig92end exon 38225 38764 38225 ID=MsG0080049140.01.T01:exon:127;Parent=MsG0080049140.01.T01
contig92end five_prime_UTR 37577 37665 37577 ID=MsG0080049140.01.T01:five_prime_utr;Parent=MsG0080049140.01.T01
contig92end CDS 37666 37852 37666 ID=MsG0080049140.01.T01:cds;Parent=MsG0080049140.01.T01
contig92end CDS 38225 38601 38225 ID=MsG0080049140.01.T01:cds;Parent=MsG0080049140.01.T01
contig92end three_prime_UTR 38602 38764 38602 ID=MsG0080049140.01.T01:three_prime_utr;Parent=MsG0080049140.01.T01
Gene Sequence

>MsG0080049140.01.T01

ATGGCTGGTTCATCTTCTTCATCATCTTGTTCTCTTTTGGTTCTTTTTGTTCTCTTTGGTTGTGCTTTTGCAGCTAAGGATATCTTGCTTGGTGGCAAAACTGATGCATGGAAGGTTCCTTCTTCGGAATCTGATTCTCTCAACAAATGGGCTTCAAGTGTTCGGTTTCAAGTTGGAGACCATCTAATTTGGAAATATGAAGCTGGAAAAGATTCTGTTTTGCAAGTGAGTAAGGAAGATTATGATAGCTGCAACACCTCAAAACCCATCAAACACTACAATGATGGGAACACTAAAGTGAGATTTGATCATTCTGGTCCATACTACTACATCAGTGGAGAAAAGGGTCACTGTGAGAAGGGTCAGAAGCTTACTGTGGTTGTCATGAGTCTAAGGGGGGGAAGTAGGCCCATTGTTGCTTTTTCACCAGCACCTTCACCAGCTGAAGTTGATGGTCCAGCTGGCTCAGCTGTTGCTCCAGCTCCAACAAGTGGTGCAACTGTTTTGCAAGGTGGTGGTGTATTTGTGGCTGTAGGAGTGTTTGTTGCCATGTGGCTTTTCTGA

Protein sequence

>MsG0080049140.01.T01

MAGSSSSSSCSLLVLFVLFGCAFAAKDILLGGKTDAWKVPSSESDSLNKWASSVRFQVGDHLIWKYEAGKDSVLQVSKEDYDSCNTSKPIKHYNDGNTKVRFDHSGPYYYISGEKGHCEKGQKLTVVVMSLRGGSRPIVAFSPAPSPAEVDGPAGSAVAPAPTSGATVLQGGGVFVAVGVFVAMWLF*