AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880047254.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047254.01.T01 MTR_4g123970 81.056 322 12 2 1 273 1 322 0.0 516
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880047254.01.T01 AT3G06950 65.543 267 71 3 27 273 57 322 2.77e-121 349
MsG0880047254.01.T01 AT1G34150 31.628 215 117 8 34 220 114 326 8.12e-16 77.4

Find 66 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATATTGTTCCACATATTT+TGG 0.121197 8:+83830986 MsG0880047254.01.T01:CDS
GTGATCATTGAACTAAATTT+TGG 0.137694 8:-83831382 None:intergenic
GTCTAAAATTTAAATATTAA+TGG 0.143383 8:+83831206 MsG0880047254.01.T01:three_prime_UTR
TATTGAGTTTATACATATTA+TGG 0.228707 8:-83830499 None:intergenic
ACCGTTTAATTACGACAATT+TGG 0.242990 8:+83830308 MsG0880047254.01.T01:CDS
AAAATATGTGGAACAATATT+AGG 0.254864 8:-83830984 None:intergenic
GGCTGTTTCAGAGATGTAAT+TGG 0.268432 8:+83831325 MsG0880047254.01.T01:three_prime_UTR
ACATATTATGGTAAGCAAAA+TGG 0.289437 8:-83830487 None:intergenic
CTTCATAATCATTATATTGC+TGG 0.339093 8:+83831267 MsG0880047254.01.T01:three_prime_UTR
CCGATTTGATGTGAAAGAAA+TGG 0.378687 8:+83830631 MsG0880047254.01.T01:CDS
GGAGCAGTGGAGCCTAAAAT+AGG 0.386174 8:+83831288 MsG0880047254.01.T01:three_prime_UTR
TCCTGCTTGCACCAACCAAC+TGG 0.392400 8:-83830151 None:intergenic
TCCAAATTGTCGTAATTAAA+CGG 0.394286 8:-83830309 None:intergenic
TGATGCAGGAGTCCATGCTT+GGG 0.401400 8:+83830175 MsG0880047254.01.T01:CDS
GTCGCATTGTTGCTTCAGAT+TGG 0.418270 8:+83830945 MsG0880047254.01.T01:CDS
AAAATATGCTTCACTGGATC+TGG 0.422038 8:-83830608 None:intergenic
GAAGATTGAATACCATGTTT+CGG 0.438346 8:-83830854 None:intergenic
ATCTGGTACGCGATCATTGT+GGG 0.445378 8:-83830591 None:intergenic
GCTGTTTCAGAGATGTAATT+GGG 0.445502 8:+83831326 MsG0880047254.01.T01:three_prime_UTR
AGGGAAGTTGGAGATGGAAT+CGG 0.449511 8:-83828863 None:intergenic
GCGTGGAATTCAGCTGATGC+AGG 0.451298 8:-83830393 None:intergenic
CCATTTCTTTCACATCAAAT+CGG 0.454616 8:-83830631 None:intergenic
CTGATGCAGGAGTCCATGCT+TGG 0.463793 8:+83830174 MsG0880047254.01.T01:CDS
AATCGGAAAATATGCTTCAC+TGG 0.470992 8:-83830614 None:intergenic
TCTACGGCGCATTGTACAGT+AGG 0.472692 8:-83830086 None:intergenic
AGGAGTCCATGCTTGGGGTC+AGG 0.479875 8:+83830181 MsG0880047254.01.T01:CDS
TCCAGTTGGTTGGTGCAAGC+AGG 0.481534 8:+83830150 MsG0880047254.01.T01:CDS
CATACAGAAAGAAGGGAAGT+TGG 0.491033 8:-83828875 None:intergenic
CAGCTAGAAGTTGAAGGCTC+GGG 0.495832 8:+83830813 MsG0880047254.01.T01:CDS
GAATAGGCAGTGAAATGAGT+TGG 0.498812 8:+83828807 None:intergenic
CATTCATACATACAGAAAGA+AGG 0.507840 8:-83828883 None:intergenic
AATAGGCAGTGAAATGAGTT+GGG 0.520368 8:+83828808 None:intergenic
TTAGAGCAACAAAGCTTCAA+AGG 0.523117 8:+83830120 MsG0880047254.01.T01:CDS
GCAGCTAGAAGTTGAAGGCT+CGG 0.527801 8:+83830812 MsG0880047254.01.T01:CDS
AGTCACTTGTTGCCTCCACC+AGG 0.529491 8:+83831095 MsG0880047254.01.T01:CDS
GGTGCAAGCAGGACTGATGC+AGG 0.533920 8:+83830161 MsG0880047254.01.T01:CDS
GAAAGAAGGGAAGTTGGAGA+TGG 0.534216 8:-83828869 None:intergenic
AGCAACAAAGCTTCAAAGGA+AGG 0.536541 8:+83830124 MsG0880047254.01.T01:CDS
TGTATTCTAATGATAATACT+AGG 0.545844 8:+83831169 MsG0880047254.01.T01:exon
TTTGCAGGGCAACCTGGTGG+AGG 0.546040 8:-83831107 None:intergenic
CTACGGCGCATTGTACAGTA+GGG 0.547422 8:-83830085 None:intergenic
CATCAGCTGAATTCCACGCT+CGG 0.550432 8:+83830397 MsG0880047254.01.T01:CDS
ATTCATACATACAGAAAGAA+GGG 0.552512 8:-83828882 None:intergenic
TTTGGAGAGTCGTGATCGCA+AGG 0.562237 8:+83831004 MsG0880047254.01.T01:CDS
TCACGACTCTCCAAAATATG+TGG 0.564125 8:-83830996 None:intergenic
ATCTGACCTGACCCCAAGCA+TGG 0.568094 8:-83830187 None:intergenic
TATGTGGAACAATATTAGGA+GGG 0.569490 8:-83830980 None:intergenic
TCATTATATTGCTGGAGCAG+TGG 0.572054 8:+83831275 MsG0880047254.01.T01:three_prime_UTR
ATATGTGGAACAATATTAGG+AGG 0.574988 8:-83830981 None:intergenic
AGAGTTCACGCTGCTTTGAA+CGG 0.578649 8:+83830333 MsG0880047254.01.T01:CDS
CGTGGAATTCAGCTGATGCA+GGG 0.588035 8:-83830392 None:intergenic
TCTCTAACTCGTATATCAGA+AGG 0.591774 8:-83830363 None:intergenic
GATCTGGTACGCGATCATTG+TGG 0.593882 8:-83830592 None:intergenic
AGGAAGGATCTCCAGTTGGT+TGG 0.596611 8:+83830140 MsG0880047254.01.T01:CDS
TGCTATTATCTGCCACCACA+TGG 0.601083 8:+83831041 MsG0880047254.01.T01:CDS
ATTGTTGCTTCAGATTGGAA+AGG 0.610327 8:+83830950 MsG0880047254.01.T01:CDS
TCATACCATAAGAAAATGCA+AGG 0.613094 8:+83831145 MsG0880047254.01.T01:CDS
TCAAAGGAAGGATCTCCAGT+TGG 0.617658 8:+83830136 MsG0880047254.01.T01:CDS
GATGCAGGAGTCCATGCTTG+GGG 0.645475 8:+83830176 MsG0880047254.01.T01:CDS
TACGGCGCATTGTACAGTAG+GGG 0.655013 8:-83830084 None:intergenic
ATGTGGAACAATATTAGGAG+GGG 0.656496 8:-83830979 None:intergenic
AGCAGCAGCAACAACATCAG+TGG 0.661577 8:+83828835 MsG0880047254.01.T01:CDS
GTATAGACAAGTCCGAAACA+TGG 0.664436 8:+83830842 MsG0880047254.01.T01:CDS
ACGGCGCATTGTACAGTAGG+GGG 0.692690 8:-83830083 None:intergenic
GAAACAAGACAAAGACCATG+TGG 0.703286 8:-83831056 None:intergenic
ACAAGACAAAGACCATGTGG+TGG 0.708267 8:-83831053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTCTAAAATTTAAATATTAA+TGG + Chr8:83831206-83831225 MsG0880047254.01.T01:three_prime_UTR 10.0%
!! AACTAAAATAAGTATAGTAT+AGG + Chr8:83829164-83829183 MsG0880047254.01.T01:intron 15.0%
!! CCAAATATAAAAATCTAATA+TGG - Chr8:83829312-83829331 None:intergenic 15.0%
!! CCTAATATAAAAATCTAATA+CGG - Chr8:83829480-83829499 None:intergenic 15.0%
!! TATTGAGTTTATACATATTA+TGG - Chr8:83830502-83830521 None:intergenic 15.0%
!!! CAACAATAACTTTTTTAATT+TGG - Chr8:83830884-83830903 None:intergenic 15.0%
!!! CCATATTAGATTTTTATATT+TGG + Chr8:83829309-83829328 MsG0880047254.01.T01:intron 15.0%
!! AAAATATGTGGAACAATATT+AGG - Chr8:83830987-83831006 None:intergenic 20.0%
!! TGTATTCTAATGATAATACT+AGG + Chr8:83831169-83831188 MsG0880047254.01.T01:exon 20.0%
!! TTTCAAAAAATAAACCAAGA+AGG - Chr8:83830737-83830756 None:intergenic 20.0%
!!! CCGTATTAGATTTTTATATT+AGG + Chr8:83829477-83829496 MsG0880047254.01.T01:intron 20.0%
!!! TAATATTGTTCCACATATTT+TGG + Chr8:83830986-83831005 MsG0880047254.01.T01:CDS 20.0%
!!! TCTAATTAAAGCTTTTTCTA+CGG - Chr8:83830105-83830124 None:intergenic 20.0%
!!! TGTTTTTATTCATTAAATGC+TGG - Chr8:83829984-83830003 None:intergenic 20.0%
! ACATATTATGGTAAGCAAAA+TGG - Chr8:83830490-83830509 None:intergenic 25.0%
! ATGCAATATGCAAGTAATAT+TGG - Chr8:83829603-83829622 None:intergenic 25.0%
! ATTCATACATACAGAAAGAA+GGG - Chr8:83828885-83828904 None:intergenic 25.0%
! CTTCATAATCATTATATTGC+TGG + Chr8:83831267-83831286 MsG0880047254.01.T01:three_prime_UTR 25.0%
! TAAAAATACCAAATCCAAGT+TGG + Chr8:83829840-83829859 MsG0880047254.01.T01:intron 25.0%
! TCCAAATTGTCGTAATTAAA+CGG - Chr8:83830312-83830331 None:intergenic 25.0%
! TGCAATATGCAAGTAATATT+GGG - Chr8:83829602-83829621 None:intergenic 25.0%
! TTATAACTTATTGTGACTGT+AGG + Chr8:83830269-83830288 MsG0880047254.01.T01:intron 25.0%
!! AAAAGCTAAACTCCTATTTT+AGG - Chr8:83831303-83831322 None:intergenic 25.0%
!! AAGCTGCAAGATATTTTATT+GGG + Chr8:83830537-83830556 MsG0880047254.01.T01:CDS 25.0%
!! ATATATCTGTTTGCATTTTC+AGG + Chr8:83830923-83830942 MsG0880047254.01.T01:intron 25.0%
!!! AAAATAGGAGTTTAGCTTTT+AGG + Chr8:83831303-83831322 MsG0880047254.01.T01:three_prime_UTR 25.0%
!!! AAATAGGAGTTTAGCTTTTA+GGG + Chr8:83831304-83831323 MsG0880047254.01.T01:three_prime_UTR 25.0%
!!! AACTTGGATTTGGTATTTTT+AGG - Chr8:83829841-83829860 None:intergenic 25.0%
!!! CTTATTTTTATCCGAAACTT+AGG + Chr8:83829570-83829589 MsG0880047254.01.T01:intron 25.0%
!!! TTTTTCTCCATTATTTTGAC+TGG + Chr8:83830027-83830046 MsG0880047254.01.T01:intron 25.0%
AAAATCTAATACGGTATCTG+AGG - Chr8:83829471-83829490 None:intergenic 30.0%
ACCGTTTAATTACGACAATT+TGG + Chr8:83830308-83830327 MsG0880047254.01.T01:CDS 30.0%
AGAAGAGAAAGAGAAAAAAG+AGG - Chr8:83828928-83828947 None:intergenic 30.0%
ATAGTATAGGCTCTTAATGT+TGG + Chr8:83829177-83829196 MsG0880047254.01.T01:intron 30.0%
ATATGTGGAACAATATTAGG+AGG - Chr8:83830984-83831003 None:intergenic 30.0%
CACTCTTTATGAACTCTTAT+TGG + Chr8:83829375-83829394 MsG0880047254.01.T01:intron 30.0%
CATTCATACATACAGAAAGA+AGG - Chr8:83828886-83828905 None:intergenic 30.0%
CCATTTCTTTCACATCAAAT+CGG - Chr8:83830634-83830653 None:intergenic 30.0%
GAAAACTACACCTTTCTATA+TGG - Chr8:83829962-83829981 None:intergenic 30.0%
GAAGAGAAAGAGAAAAAAGA+GGG - Chr8:83828927-83828946 None:intergenic 30.0%
GAAGATTGAATACCATGTTT+CGG - Chr8:83830857-83830876 None:intergenic 30.0%
GCATTTCTCTCAAAGTAAAT+AGG - Chr8:83829701-83829720 None:intergenic 30.0%
GGTGCATGTATATAAATAGT+GGG + Chr8:83829430-83829449 MsG0880047254.01.T01:intron 30.0%
TAATAATGTTCACAGCAGTA+CGG - Chr8:83830684-83830703 None:intergenic 30.0%
TATGTGGAACAATATTAGGA+GGG - Chr8:83830983-83831002 None:intergenic 30.0%
TCATACCATAAGAAAATGCA+AGG + Chr8:83831145-83831164 MsG0880047254.01.T01:CDS 30.0%
TGGTGCATGTATATAAATAG+TGG + Chr8:83829429-83829448 MsG0880047254.01.T01:intron 30.0%
TTACCATGTTTATACCTTCT+TGG + Chr8:83830720-83830739 MsG0880047254.01.T01:intron 30.0%
TTGGGAAAAAACCTAAGTTT+CGG - Chr8:83829584-83829603 None:intergenic 30.0%
! AAACCAAGAAGGTATAAACA+TGG - Chr8:83830726-83830745 None:intergenic 30.0%
! GAAGCTGCAAGATATTTTAT+TGG + Chr8:83830536-83830555 MsG0880047254.01.T01:CDS 30.0%
! TACAACCTTGCATTTTCTTA+TGG - Chr8:83831153-83831172 None:intergenic 30.0%
!! AAAATGGTGTCACAAACTTA+AGG - Chr8:83829769-83829788 None:intergenic 30.0%
!! ATTTTGAGCTTTATCCAACT+TGG - Chr8:83829857-83829876 None:intergenic 30.0%
!! GGGATTTGGTATTCTTTTTA+TGG - Chr8:83829923-83829942 None:intergenic 30.0%
AAAACGACTTGTAAGGTAAG+GGG + Chr8:83829517-83829536 MsG0880047254.01.T01:intron 35.0%
AAAATATGCTTCACTGGATC+TGG - Chr8:83830611-83830630 None:intergenic 35.0%
AATCGGAAAATATGCTTCAC+TGG - Chr8:83830617-83830636 None:intergenic 35.0%
AATCTCACGTTCAATGCTAT+TGG + Chr8:83829403-83829422 MsG0880047254.01.T01:intron 35.0%
AATGAATGATGCCTGCATAA+CGG - Chr8:83829077-83829096 None:intergenic 35.0%
ACAGTCACCAGTCAAAATAA+TGG - Chr8:83830037-83830056 None:intergenic 35.0%
ATCTCACGTTCAATGCTATT+GGG + Chr8:83829404-83829423 MsG0880047254.01.T01:intron 35.0%
ATGTGGAACAATATTAGGAG+GGG - Chr8:83830982-83831001 None:intergenic 35.0%
CTTTACGAAAACGACTTGTA+AGG + Chr8:83829510-83829529 MsG0880047254.01.T01:intron 35.0%
GAAAACGACTTGTAAGGTAA+GGG + Chr8:83829516-83829535 MsG0880047254.01.T01:intron 35.0%
GAATTCTTCAAGTGATGTTG+TGG + Chr8:83828993-83829012 MsG0880047254.01.T01:intron 35.0%
GACTCTTGATCCATATAGAA+AGG + Chr8:83829949-83829968 MsG0880047254.01.T01:intron 35.0%
GATTTACAGTGATACCATCA+TGG + Chr8:83830451-83830470 MsG0880047254.01.T01:intron 35.0%
TCTCAAACATTGTAACCATG+AGG + Chr8:83829651-83829670 MsG0880047254.01.T01:intron 35.0%
TCTCTAACTCGTATATCAGA+AGG - Chr8:83830366-83830385 None:intergenic 35.0%
TTAGAGCAACAAAGCTTCAA+AGG + Chr8:83830120-83830139 MsG0880047254.01.T01:CDS 35.0%
! AGCTTTATCCAACTTGGATT+TGG - Chr8:83829851-83829870 None:intergenic 35.0%
! ATTGTTGCTTCAGATTGGAA+AGG + Chr8:83830950-83830969 MsG0880047254.01.T01:CDS 35.0%
! CCGATTTGATGTGAAAGAAA+TGG + Chr8:83830631-83830650 MsG0880047254.01.T01:CDS 35.0%
! GCTGTTTCAGAGATGTAATT+GGG + Chr8:83831326-83831345 MsG0880047254.01.T01:three_prime_UTR 35.0%
! TGAATGAAGTTTTCAGCTTG+AGG + Chr8:83829887-83829906 MsG0880047254.01.T01:intron 35.0%
!! TTTGTGACACCATTTTTGTG+AGG + Chr8:83829773-83829792 MsG0880047254.01.T01:intron 35.0%
AAAACCGTCTTGTGACTTGA+GGG + Chr8:83829348-83829367 MsG0880047254.01.T01:intron 40.0%
AAGCTGAAATTGCGCACAAA+AGG - Chr8:83830222-83830241 None:intergenic 40.0%
AGCAACAAAGCTTCAAAGGA+AGG + Chr8:83830124-83830143 MsG0880047254.01.T01:CDS 40.0%
ATGAATGATGCCTGCATAAC+GGG - Chr8:83829076-83829095 None:intergenic 40.0%
ATGGATCAAGAGTCAAAGCA+GGG - Chr8:83829943-83829962 None:intergenic 40.0%
CACGTCAATATCAATGTGCA+GGG + Chr8:83830780-83830799 MsG0880047254.01.T01:intron 40.0%
CACTTATAGCCATCTTGGTT+GGG - Chr8:83829027-83829046 None:intergenic 40.0%
CAGACAATGCCTCACAAAAA+TGG - Chr8:83829785-83829804 None:intergenic 40.0%
CATACAGAAAGAAGGGAAGT+TGG - Chr8:83828878-83828897 None:intergenic 40.0%
CGAAAACGACTTGTAAGGTA+AGG + Chr8:83829515-83829534 MsG0880047254.01.T01:intron 40.0%
GAAACAAGACAAAGACCATG+TGG - Chr8:83831059-83831078 None:intergenic 40.0%
GTATAGACAAGTCCGAAACA+TGG + Chr8:83830842-83830861 MsG0880047254.01.T01:CDS 40.0%
GTTGGAGATACTCACTTGTA+AGG + Chr8:83829195-83829214 MsG0880047254.01.T01:intron 40.0%
TATGGATCAAGAGTCAAAGC+AGG - Chr8:83829944-83829963 None:intergenic 40.0%
TCACGACTCTCCAAAATATG+TGG - Chr8:83830999-83831018 None:intergenic 40.0%
TCACGTCAATATCAATGTGC+AGG + Chr8:83830779-83830798 MsG0880047254.01.T01:intron 40.0%
TCATTATATTGCTGGAGCAG+TGG + Chr8:83831275-83831294 MsG0880047254.01.T01:three_prime_UTR 40.0%
TCTTATCGCTTCAACACCAT+TGG + Chr8:83829235-83829254 MsG0880047254.01.T01:intron 40.0%
TGATACGAATCAGAACCTCA+TGG - Chr8:83829669-83829688 None:intergenic 40.0%
TGGTATTCGAGCTTACCAAT+CGG - Chr8:83829292-83829311 None:intergenic 40.0%
TTCCATCGTAAGACAAAAGG+AGG - Chr8:83829053-83829072 None:intergenic 40.0%
! AGCTTTCAAGTGGCAAACAT+TGG + Chr8:83830237-83830256 MsG0880047254.01.T01:intron 40.0%
! CTTTTGCAGCTAGAAGTTGA+AGG + Chr8:83830807-83830826 MsG0880047254.01.T01:CDS 40.0%
! GGCTGTTTCAGAGATGTAAT+TGG + Chr8:83831325-83831344 MsG0880047254.01.T01:three_prime_UTR 40.0%
! TTTGACTGGTGACTGTTTTC+AGG + Chr8:83830041-83830060 MsG0880047254.01.T01:intron 40.0%
!! ACTTGGTGCGTGTGTATAAA+CGG + Chr8:83829258-83829277 MsG0880047254.01.T01:intron 40.0%
!! AGTCACAAGACGGTTTTGTA+AGG - Chr8:83829345-83829364 None:intergenic 40.0%
!! TGGTGTCACAAACTTAAGGT+TGG - Chr8:83829765-83829784 None:intergenic 40.0%
AAACCGTCTTGTGACTTGAG+GGG + Chr8:83829349-83829368 MsG0880047254.01.T01:intron 45.0%
ACAAGACAAAGACCATGTGG+TGG - Chr8:83831056-83831075 None:intergenic 45.0%
ACGTTCAATGCTATTGGGCT+TGG + Chr8:83829409-83829428 MsG0880047254.01.T01:intron 45.0%
AGGGAAGTTGGAGATGGAAT+CGG - Chr8:83828866-83828885 None:intergenic 45.0%
ATCTGGTACGCGATCATTGT+GGG - Chr8:83830594-83830613 None:intergenic 45.0%
CAAAACCGTCTTGTGACTTG+AGG + Chr8:83829347-83829366 MsG0880047254.01.T01:intron 45.0%
CAAGAGTCAAAGCAGGGATT+TGG - Chr8:83829937-83829956 None:intergenic 45.0%
CCAACCAAGATGGCTATAAG+TGG + Chr8:83829025-83829044 MsG0880047254.01.T01:intron 45.0%
CCACTTATAGCCATCTTGGT+TGG - Chr8:83829028-83829047 None:intergenic 45.0%
GAAAGAAGGGAAGTTGGAGA+TGG - Chr8:83828872-83828891 None:intergenic 45.0%
GCGCAATTTCAGCTTTCAAG+TGG + Chr8:83830227-83830246 MsG0880047254.01.T01:intron 45.0%
GGGTTCCATCGTAAGACAAA+AGG - Chr8:83829056-83829075 None:intergenic 45.0%
GGTATTCGAGCTTACCAATC+GGG - Chr8:83829291-83829310 None:intergenic 45.0%
TATGGTAAGCAAAATGGCGC+TGG - Chr8:83830484-83830503 None:intergenic 45.0%
TCAAAGGAAGGATCTCCAGT+TGG + Chr8:83830136-83830155 MsG0880047254.01.T01:CDS 45.0%
TCACTTGTAAGGTGAGAGAG+AGG + Chr8:83829206-83829225 MsG0880047254.01.T01:intron 45.0%
TGCTATTATCTGCCACCACA+TGG + Chr8:83831041-83831060 MsG0880047254.01.T01:CDS 45.0%
! AGAGTTCACGCTGCTTTGAA+CGG + Chr8:83830333-83830352 MsG0880047254.01.T01:CDS 45.0%
! GCATGCCAGAACTTTTTGCA+GGG - Chr8:83831124-83831143 None:intergenic 45.0%
! GTCGCATTGTTGCTTCAGAT+TGG + Chr8:83830945-83830964 MsG0880047254.01.T01:CDS 45.0%
! TAAGCAAAATGGCGCTGGAA+CGG - Chr8:83830479-83830498 None:intergenic 45.0%
! TGCATGCCAGAACTTTTTGC+AGG - Chr8:83831125-83831144 None:intergenic 45.0%
!! CGGTTTTGTAAGGACGAGTT+TGG - Chr8:83829335-83829354 None:intergenic 45.0%
!! GTTTTCAGGCTGGCAATATC+AGG + Chr8:83830055-83830074 MsG0880047254.01.T01:intron 45.0%
ACACCCCTCAAGTCACAAGA+CGG - Chr8:83829355-83829374 None:intergenic 50.0%
AGCAGCAGCAACAACATCAG+TGG + Chr8:83828835-83828854 MsG0880047254.01.T01:CDS 50.0%
AGGAAGGATCTCCAGTTGGT+TGG + Chr8:83830140-83830159 MsG0880047254.01.T01:CDS 50.0%
CAGCTAGAAGTTGAAGGCTC+GGG + Chr8:83830813-83830832 MsG0880047254.01.T01:CDS 50.0%
CATCAGCTGAATTCCACGCT+CGG + Chr8:83830397-83830416 MsG0880047254.01.T01:CDS 50.0%
CGCTTCAACACCATTGGACT+TGG + Chr8:83829241-83829260 MsG0880047254.01.T01:intron 50.0%
CGTGGAATTCAGCTGATGCA+GGG - Chr8:83830395-83830414 None:intergenic 50.0%
CTACGGCGCATTGTACAGTA+GGG - Chr8:83830088-83830107 None:intergenic 50.0%
GAAGTGAAGCCCAACCAAGA+TGG + Chr8:83829015-83829034 MsG0880047254.01.T01:intron 50.0%
GATCTGGTACGCGATCATTG+TGG - Chr8:83830595-83830614 None:intergenic 50.0%
GCAGCTAGAAGTTGAAGGCT+CGG + Chr8:83830812-83830831 MsG0880047254.01.T01:CDS 50.0%
GCGTGTGTATAAACGGTTGG+TGG + Chr8:83829265-83829284 MsG0880047254.01.T01:intron 50.0%
GGAGCAGTGGAGCCTAAAAT+AGG + Chr8:83831288-83831307 MsG0880047254.01.T01:three_prime_UTR 50.0%
GGTGCGTGTGTATAAACGGT+TGG + Chr8:83829262-83829281 MsG0880047254.01.T01:intron 50.0%
GGTTGCCCTGCAAAAAGTTC+TGG + Chr8:83831116-83831135 MsG0880047254.01.T01:CDS 50.0%
TACACACGCACCAAGTCCAA+TGG - Chr8:83829254-83829273 None:intergenic 50.0%
TACGATGGAACCCGTTATGC+AGG + Chr8:83829063-83829082 MsG0880047254.01.T01:intron 50.0%
TACGGCGCATTGTACAGTAG+GGG - Chr8:83830087-83830106 None:intergenic 50.0%
TCTACGGCGCATTGTACAGT+AGG - Chr8:83830089-83830108 None:intergenic 50.0%
TGATGCAGGAGTCCATGCTT+GGG + Chr8:83830175-83830194 MsG0880047254.01.T01:CDS 50.0%
TTTGGAGAGTCGTGATCGCA+AGG + Chr8:83831004-83831023 MsG0880047254.01.T01:CDS 50.0%
! AAGCAAAATGGCGCTGGAAC+GGG - Chr8:83830478-83830497 None:intergenic 50.0%
! CGCCTCCTTTTGTCTTACGA+TGG + Chr8:83829048-83829067 MsG0880047254.01.T01:intron 50.0%
! CGGTATCTGAGGCTATCGAT+CGG - Chr8:83829460-83829479 None:intergenic 50.0%
! CTTTTTGCAGAAACCGAGCG+TGG - Chr8:83830413-83830432 None:intergenic 50.0%
! GAACTTTTTGCAGGGCAACC+TGG - Chr8:83831116-83831135 None:intergenic 50.0%
! GGTATCTGAGGCTATCGATC+GGG - Chr8:83829459-83829478 None:intergenic 50.0%
!! ACTGGTGACTGTTTTCAGGC+TGG + Chr8:83830045-83830064 MsG0880047254.01.T01:intron 50.0%
ACGGCGCATTGTACAGTAGG+GGG - Chr8:83830086-83830105 None:intergenic 55.0%
ATCTGACCTGACCCCAAGCA+TGG - Chr8:83830190-83830209 None:intergenic 55.0%
CTGATGCAGGAGTCCATGCT+TGG + Chr8:83830174-83830193 MsG0880047254.01.T01:CDS 55.0%
GATGCAGGAGTCCATGCTTG+GGG + Chr8:83830176-83830195 MsG0880047254.01.T01:CDS 55.0%
GCGTGGAATTCAGCTGATGC+AGG - Chr8:83830396-83830415 None:intergenic 55.0%
GGCGCCACTTATAGCCATCT+TGG - Chr8:83829032-83829051 None:intergenic 55.0%
TCCTGCTTGCACCAACCAAC+TGG - Chr8:83830154-83830173 None:intergenic 55.0%
! AGTCACTTGTTGCCTCCACC+AGG + Chr8:83831095-83831114 MsG0880047254.01.T01:CDS 55.0%
! CTTTTTGCAGGGCAACCTGG+TGG - Chr8:83831113-83831132 None:intergenic 55.0%
! TCCAGTTGGTTGGTGCAAGC+AGG + Chr8:83830150-83830169 MsG0880047254.01.T01:CDS 55.0%
!! TAAACGGTTGGTGGCCCGAT+TGG + Chr8:83829274-83829293 MsG0880047254.01.T01:intron 55.0%
AGGAGTCCATGCTTGGGGTC+AGG + Chr8:83830181-83830200 MsG0880047254.01.T01:CDS 60.0%
GGTGCAAGCAGGACTGATGC+AGG + Chr8:83830161-83830180 MsG0880047254.01.T01:CDS 60.0%
TTTGCAGGGCAACCTGGTGG+AGG - Chr8:83831110-83831129 None:intergenic 60.0%
GCGCTGGAACGGGTCCATGA+TGG - Chr8:83830468-83830487 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 83828821 83831399 83828821 ID=MsG0880047254.01;Name=MsG0880047254.01
Chr8 mRNA 83828821 83831399 83828821 ID=MsG0880047254.01.T01;Parent=MsG0880047254.01;Name=MsG0880047254.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.6|0.66|1|1|1|6|221|273
Chr8 exon 83828821 83828896 83828821 ID=MsG0880047254.01.T01:exon:35667;Parent=MsG0880047254.01.T01
Chr8 exon 83830063 83830202 83830063 ID=MsG0880047254.01.T01:exon:35668;Parent=MsG0880047254.01.T01
Chr8 exon 83830291 83830431 83830291 ID=MsG0880047254.01.T01:exon:35669;Parent=MsG0880047254.01.T01
Chr8 exon 83830485 83830652 83830485 ID=MsG0880047254.01.T01:exon:35670;Parent=MsG0880047254.01.T01
Chr8 exon 83830801 83830863 83830801 ID=MsG0880047254.01.T01:exon:35671;Parent=MsG0880047254.01.T01
Chr8 exon 83830945 83831399 83830945 ID=MsG0880047254.01.T01:exon:35672;Parent=MsG0880047254.01.T01
Chr8 CDS 83828821 83828896 83828821 ID=MsG0880047254.01.T01:cds;Parent=MsG0880047254.01.T01
Chr8 CDS 83830063 83830202 83830063 ID=MsG0880047254.01.T01:cds;Parent=MsG0880047254.01.T01
Chr8 CDS 83830291 83830431 83830291 ID=MsG0880047254.01.T01:cds;Parent=MsG0880047254.01.T01
Chr8 CDS 83830485 83830652 83830485 ID=MsG0880047254.01.T01:cds;Parent=MsG0880047254.01.T01
Chr8 CDS 83830801 83830863 83830801 ID=MsG0880047254.01.T01:cds;Parent=MsG0880047254.01.T01
Chr8 CDS 83830945 83831178 83830945 ID=MsG0880047254.01.T01:cds;Parent=MsG0880047254.01.T01
Chr8 three_prime_UTR 83831179 83831399 83831179 ID=MsG0880047254.01.T01:three_prime_utr;Parent=MsG0880047254.01.T01
Gene Sequence

>MsG0880047254.01.T01

ATGAGTTGGGCATTAGCAGCAGCAACAACATCAGTGGTTACTCCGATTCCATCTCCAACTTCCCTTCTTTCTGTATGCTGGCAATATCAGGAGTCTCCCCCTACTGTACAATGCGCCGTAGAAAAAGCTTTAATTAGAGCAACAAAGCTTCAAAGGAAGGATCTCCAGTTGGTTGGTGCAAGCAGGACTGATGCAGGAGTCCATGCTTGGGGTCAGGTTGCACATTTTCATACACCGTTTAATTACGACAATTTGGATAGAGTTCACGCTGCTTTGAACGGTCTTCTTCCTTCTGATATACGAGTTAGAGAGATCAGCCCTGCATCAGCTGAATTCCACGCTCGGTTTCTGCAAAAACGCCATTTTGCTTACCATAATATGTATAAACTCAATAGTGCTGCTATGAGAGAAGCTGCAAGATATTTTATTGGGAAGCATGATTTCACTGCTTTTGAAAATGCATCCCACAATGATCGCGTACCAGATCCAGTGAAGCATATTTTCCGATTTGATGTGAAAGAAATGGGAGCTCTTTTGCAGCTAGAAGTTGAAGGCTCGGGTTTCTTGTATAGACAAGTCCGAAACATGGTCGCATTGTTGCTTCAGATTGGAAAGGAAGCAACCCCTCCTAATATTGTTCCACATATTTTGGAGAGTCGTGATCGCAAGGAGCTTGCAAAATACTGCTATTATCTGCCACCACATGGTCTTTGTCTTGTTTCTATTAACTATAATGAAAGTCACTTGTTGCCTCCACCAGGTTGCCCTGCAAAAAGTTCTGGCATGCATCATACCATAAGAAAATGCAAGGTTGTATTCTAA
Protein sequence

>MsG0880047254.01.T01

MSWALAAATTSVVTPIPSPTSLLSVCWQYQESPPTVQCAVEKALIRATKLQRKDLQLVGASRTDAGVHAWGQVAHFHTPFNYDNLDRVHAALNGLLPSDIRVREISPASAEFHARFLQKRHFAYHNMYKLNSAAMREAARYFIGKHDFTAFENASHNDRVPDPVKHIFRFDVKEMGALLQLEVEGSGFLYRQVRNMVALLLQIGKEATPPNIVPHILESRDRKELAKYCYYLPPHGLCLVSINYNESHLLPPPGCPAKSSGMHHTIRKCKVVF*