AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021497.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021497.01.T01 MTR_4g074590 44.595 148 36 5 47 163 119 251 7.79e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 37 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCAAAATCTGGAAATT+TGG 0.255055 4:-58606517 MsG0480021497.01.T01:CDS
TGAAATACCTGTCGGCAATA+TGG 0.256325 4:+58605286 None:intergenic
ATATTGAGCTGAAGCTTCTT+TGG 0.266827 4:+58606491 None:intergenic
AAGACGCCGCTACCTGAAAT+TGG 0.281826 4:-58604623 MsG0480021497.01.T01:CDS
TAAGGGTCATCTCCAATTTC+AGG 0.323199 4:+58604611 None:intergenic
GAAATACCTGTCGGCAATAT+GGG 0.350769 4:+58605287 None:intergenic
AGTCCAAGTTGTCCTTTCTT+TGG 0.355957 4:+58606366 None:intergenic
GGCCTTGGTAGCAGTGTAGC+AGG 0.374582 4:+58606462 None:intergenic
AAATTAACGTATGGGTTCTC+AGG 0.395176 4:-58604667 MsG0480021497.01.T01:CDS
CAAAAGGTGGTCGAGACTAT+TGG 0.396305 4:-58603657 MsG0480021497.01.T01:CDS
GTCAGGCTTCTTTCGACAAA+AGG 0.416003 4:-58603673 MsG0480021497.01.T01:CDS
AGAGAGAAAAGTGAAGGTTT+TGG 0.419828 4:+58606441 None:intergenic
AGATACAAGTGGACAAAGTC+AGG 0.421106 4:-58603690 MsG0480021497.01.T01:CDS
GGACAACTTGGACTCTCCTT+TGG 0.428988 4:-58606357 MsG0480021497.01.T01:CDS
AGTTGAGATATGGCAAAATC+TGG 0.437849 4:-58606525 None:intergenic
TTGATTTGAGACTTACATAA+GGG 0.453725 4:+58604594 None:intergenic
TTCTTTGGTAGAAGCAGTGA+TGG 0.472166 4:+58606381 None:intergenic
ATTGATTTGAGACTTACATA+AGG 0.483290 4:+58604593 None:intergenic
AATATCACAGAATTAAAGTA+AGG 0.495055 4:+58606303 None:intergenic
GATTGACACAAATTAACGTA+TGG 0.496111 4:-58604676 MsG0480021497.01.T01:CDS
ACAGAATTAAAGTAAGGAGA+AGG 0.513022 4:+58606309 None:intergenic
CTACCAAAGAAAGGACAACT+TGG 0.521175 4:-58606369 MsG0480021497.01.T01:CDS
TTCTTCCCCATATTGCCGAC+AGG 0.531443 4:-58605293 MsG0480021497.01.T01:intron
TAAAGTAAGGAGAAGGGAAA+GGG 0.535963 4:+58606316 None:intergenic
TTAAAGTAAGGAGAAGGGAA+AGG 0.539745 4:+58606315 None:intergenic
GCCTTGGTAGCAGTGTAGCA+GGG 0.557882 4:+58606463 None:intergenic
ATTGACACAAATTAACGTAT+GGG 0.572467 4:-58604675 MsG0480021497.01.T01:CDS
TCACTGCTTCTACCAAAGAA+AGG 0.574165 4:-58606378 MsG0480021497.01.T01:CDS
TCATCTCCAATTTCAGGTAG+CGG 0.574462 4:+58604617 None:intergenic
CACACTTACAATAATACTAG+TGG 0.576579 4:-58606412 MsG0480021497.01.T01:CDS
TCCCTGCTACACTGCTACCA+AGG 0.578770 4:-58606464 MsG0480021497.01.T01:CDS
CAGAATTAAAGTAAGGAGAA+GGG 0.583576 4:+58606310 None:intergenic
AAACTGAGAGAGAAAAGTGA+AGG 0.589402 4:+58606435 None:intergenic
AGGCTTCTTTCGACAAAAGG+TGG 0.591222 4:-58603670 MsG0480021497.01.T01:CDS
AAATACCTGTCGGCAATATG+GGG 0.600836 4:+58605288 None:intergenic
AATTAACGTATGGGTTCTCA+GGG 0.617485 4:-58604666 MsG0480021497.01.T01:CDS
ACTGTATATCGAGTTACCAA+AGG 0.649362 4:+58606341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTACTAAACAAAATT+GGG + Chr4:58605830-58605849 None:intergenic 10.0%
!!! TATATTTTACTAAACAAAAT+TGG + Chr4:58605831-58605850 None:intergenic 10.0%
!!! ACTTTTTTTGTCTTAATAAT+GGG + Chr4:58605100-58605119 None:intergenic 15.0%
!!! CATGAATTCATTTTTTAATA+TGG - Chr4:58604220-58604239 MsG0480021497.01.T01:intron 15.0%
!!! TACTTTTTTTGTCTTAATAA+TGG + Chr4:58605101-58605120 None:intergenic 15.0%
!!! TTTTTCCTACATAAATATTA+TGG - Chr4:58604976-58604995 MsG0480021497.01.T01:intron 15.0%
!! AAAAAATAATAGACCAAACT+GGG + Chr4:58605189-58605208 None:intergenic 20.0%
!! AATATCACAGAATTAAAGTA+AGG + Chr4:58603850-58603869 None:intergenic 20.0%
!! ACAAAATCAGATATAAGAAA+AGG + Chr4:58603879-58603898 None:intergenic 20.0%
!! ATAAAAAAGTCTTACAAATC+TGG + Chr4:58605212-58605231 None:intergenic 20.0%
!! ATGTATCAATATCATTTAGA+AGG - Chr4:58604086-58604105 MsG0480021497.01.T01:intron 20.0%
!! CAAAATTCAAAATCAAGATT+GGG - Chr4:58604258-58604277 MsG0480021497.01.T01:intron 20.0%
!! TAATTGTAATTGTAACCAAA+GGG - Chr4:58604520-58604539 MsG0480021497.01.T01:intron 20.0%
!! TCAAAATTCAAAATCAAGAT+TGG - Chr4:58604257-58604276 MsG0480021497.01.T01:intron 20.0%
!!! ATGTACTAAATTTTTAGTCA+TGG - Chr4:58606037-58606056 MsG0480021497.01.T01:intron 20.0%
!!! TGTACTAAATTTTTAGTCAT+GGG - Chr4:58606038-58606057 MsG0480021497.01.T01:intron 20.0%
! AAATATCTTGCTTTCTTACT+AGG + Chr4:58604035-58604054 None:intergenic 25.0%
! ACAAGTCAGGATAAAATATT+TGG + Chr4:58604476-58604495 None:intergenic 25.0%
! AGAATTATAATTCACAAGTC+AGG + Chr4:58604489-58604508 None:intergenic 25.0%
! ATTGACACAAATTAACGTAT+GGG - Chr4:58605475-58605494 MsG0480021497.01.T01:intron 25.0%
! GAAAAAATAATAGACCAAAC+TGG + Chr4:58605190-58605209 None:intergenic 25.0%
! GTAAATGCTAATATAGTAAG+TGG - Chr4:58604142-58604161 MsG0480021497.01.T01:intron 25.0%
! GTAATTGTAATTGTAACCAA+AGG - Chr4:58604519-58604538 MsG0480021497.01.T01:intron 25.0%
! TATATCACCTGTATTATATG+AGG + Chr4:58606105-58606124 None:intergenic 25.0%
! TCAATCAAATCTGTAAATGT+AGG + Chr4:58604385-58604404 None:intergenic 25.0%
! TTACTAAACAAAATTGGGAA+AGG + Chr4:58605825-58605844 None:intergenic 25.0%
! TTCCACCATAATATTTATGT+AGG + Chr4:58604984-58605003 None:intergenic 25.0%
! TTCCTACATAAATATTATGG+TGG - Chr4:58604979-58604998 MsG0480021497.01.T01:intron 25.0%
!! ACGACTTAAAAAGTATAAGT+CGG - Chr4:58604598-58604617 MsG0480021497.01.T01:CDS 25.0%
!! GAAATTTTCGTTTTCAATGT+TGG + Chr4:58606408-58606427 None:intergenic 25.0%
!! TTGATTTGAGACTTACATAA+GGG + Chr4:58605559-58605578 None:intergenic 25.0%
!!! ATTGATTTGAGACTTACATA+AGG + Chr4:58605560-58605579 None:intergenic 25.0%
!!! CAATTCTTGTTCTAAGAAAA+TGG + Chr4:58604667-58604686 None:intergenic 25.0%
!!! GTATATTTGATAGCATTTTC+AGG + Chr4:58605718-58605737 None:intergenic 25.0%
!!! TTTGAATTTTGATCACATAG+AGG + Chr4:58604249-58604268 None:intergenic 25.0%
AAGTAGCACTAATATGGTTA+AGG - Chr4:58604543-58604562 MsG0480021497.01.T01:intron 30.0%
ACAGAATTAAAGTAAGGAGA+AGG + Chr4:58603844-58603863 None:intergenic 30.0%
AGATCAAATTCATGATGTCA+AGG + Chr4:58605156-58605175 None:intergenic 30.0%
ATCACTAGGCAAATTCAAAT+TGG + Chr4:58605771-58605790 None:intergenic 30.0%
ATGATGTCAAGGATATACTA+AGG + Chr4:58605145-58605164 None:intergenic 30.0%
CACACTTACAATAATACTAG+TGG - Chr4:58603738-58603757 MsG0480021497.01.T01:intron 30.0%
CACATAGAATAGAATTTGAC+GGG + Chr4:58605424-58605443 None:intergenic 30.0%
CAGAATTAAAGTAAGGAGAA+GGG + Chr4:58603843-58603862 None:intergenic 30.0%
CCACATAGAATAGAATTTGA+CGG + Chr4:58605425-58605444 None:intergenic 30.0%
CTGCAACAAAAGAATGTTAT+GGG + Chr4:58606269-58606288 None:intergenic 30.0%
GAATGAAATGAAATACCTGT+CGG + Chr4:58604875-58604894 None:intergenic 30.0%
GATTGACACAAATTAACGTA+TGG - Chr4:58605474-58605493 MsG0480021497.01.T01:intron 30.0%
TAGCACTCAAATATTGCTTA+GGG + Chr4:58605900-58605919 None:intergenic 30.0%
TATGTAAGTTGTCTATCACT+AGG + Chr4:58605785-58605804 None:intergenic 30.0%
TATTGATACATTCAAGAGAG+AGG + Chr4:58604077-58604096 None:intergenic 30.0%
TATTGTGTTGTGTAATGTTG+AGG + Chr4:58604946-58604965 None:intergenic 30.0%
TCCATCTACAATGTCAAATT+CGG - Chr4:58605245-58605264 MsG0480021497.01.T01:intron 30.0%
TGCAACAAAAGAATGTTATG+GGG + Chr4:58606268-58606287 None:intergenic 30.0%
! CGACTTAAAAAGTATAAGTC+GGG - Chr4:58604599-58604618 MsG0480021497.01.T01:CDS 30.0%
! TATTTGAGTGCTACTACTAA+AGG - Chr4:58605907-58605926 MsG0480021497.01.T01:intron 30.0%
! TCGGGTCAAATGAATTTTAT+TGG - Chr4:58604617-58604636 MsG0480021497.01.T01:CDS 30.0%
!! TACGTTAATTTGTGTCAATC+TGG + Chr4:58605474-58605493 None:intergenic 30.0%
!!! GTTTTGTTTTCAGATACAAG+TGG - Chr4:58606449-58606468 MsG0480021497.01.T01:CDS 30.0%
AAACTGAGAGAGAAAAGTGA+AGG + Chr4:58603718-58603737 None:intergenic 35.0%
AAAGACGTAGATGCAACAAA+CGG - Chr4:58603991-58604010 MsG0480021497.01.T01:intron 35.0%
AAAGGCTCAAAATGAGTTAC+AGG - Chr4:58605925-58605944 MsG0480021497.01.T01:intron 35.0%
AAAGGGAAGTAGCACTAATA+TGG - Chr4:58604537-58604556 MsG0480021497.01.T01:intron 35.0%
AAATTAACGTATGGGTTCTC+AGG - Chr4:58605483-58605502 MsG0480021497.01.T01:intron 35.0%
AACACTATGAACTCTACTTG+TGG + Chr4:58603909-58603928 None:intergenic 35.0%
AATTAACGTATGGGTTCTCA+GGG - Chr4:58605484-58605503 MsG0480021497.01.T01:intron 35.0%
ACTGTATATCGAGTTACCAA+AGG + Chr4:58603812-58603831 None:intergenic 35.0%
ATATTGAGCTGAAGCTTCTT+TGG + Chr4:58603662-58603681 None:intergenic 35.0%
ATCAAGATCAACTTCGTATC+CGG + Chr4:58606136-58606155 None:intergenic 35.0%
CACTAAGGACTAAAAGTAAG+TGG + Chr4:58603957-58603976 None:intergenic 35.0%
CCATCTACAATGTCAAATTC+GGG - Chr4:58605246-58605265 MsG0480021497.01.T01:intron 35.0%
CCGTCAAATTCTATTCTATG+TGG - Chr4:58605422-58605441 MsG0480021497.01.T01:intron 35.0%
CCTGCAACAAAAGAATGTTA+TGG + Chr4:58606270-58606289 None:intergenic 35.0%
CTATTGTAAAAGATGCCATC+CGG - Chr4:58606157-58606176 MsG0480021497.01.T01:intron 35.0%
CTTGTGTGACATTAATGTCA+CGG + Chr4:58605396-58605415 None:intergenic 35.0%
GAGTTGTGCAAAAAATCTGA+GGG - Chr4:58606301-58606320 MsG0480021497.01.T01:intron 35.0%
GCACTAATATGGTTAAGGAT+TGG - Chr4:58604548-58604567 MsG0480021497.01.T01:intron 35.0%
GCATTACCATTTACAAGTGT+TGG + Chr4:58604766-58604785 None:intergenic 35.0%
GTAGCACTCAAATATTGCTT+AGG + Chr4:58605901-58605920 None:intergenic 35.0%
TAAAGTAAGGAGAAGGGAAA+GGG + Chr4:58603837-58603856 None:intergenic 35.0%
TAAGGACTAAAAGTAAGTGG+AGG + Chr4:58603954-58603973 None:intergenic 35.0%
TAAGTGGAGGAATGTGAAAT+TGG + Chr4:58603941-58603960 None:intergenic 35.0%
TAATTATGATTTACCCGAGC+TGG - Chr4:58605011-58605030 MsG0480021497.01.T01:intron 35.0%
TATGGTTAAGGATTGGAACT+TGG - Chr4:58604555-58604574 MsG0480021497.01.T01:intron 35.0%
TATTCCTATCAATGTGCAGA+AGG + Chr4:58605606-58605625 None:intergenic 35.0%
TCAGAAGTCATTGCAATACA+AGG - Chr4:58606360-58606379 MsG0480021497.01.T01:CDS 35.0%
TCATTGCAATACAAGGATGT+AGG - Chr4:58606367-58606386 MsG0480021497.01.T01:CDS 35.0%
TTAAAGTAAGGAGAAGGGAA+AGG + Chr4:58603838-58603857 None:intergenic 35.0%
! AACAGTTGCTGCATTTTGAA+GGG + Chr4:58604839-58604858 None:intergenic 35.0%
! AGAGAGAAAAGTGAAGGTTT+TGG + Chr4:58603712-58603731 None:intergenic 35.0%
! ATTTGGATGAAACCACCTTT+TGG + Chr4:58604459-58604478 None:intergenic 35.0%
! CCATAACATTCTTTTGTTGC+AGG - Chr4:58606267-58606286 MsG0480021497.01.T01:intron 35.0%
! CTTTGGTGACATTAATGTCA+CGG - Chr4:58605274-58605293 MsG0480021497.01.T01:intron 35.0%
! TTGTGTCAATCTGGAATCAT+TGG + Chr4:58605465-58605484 None:intergenic 35.0%
!! ATATTAGTGCTACTTCCCTT+TGG + Chr4:58604538-58604557 None:intergenic 35.0%
!! CACTTACTTTTAGTCCTTAG+TGG - Chr4:58603955-58603974 MsG0480021497.01.T01:intron 35.0%
!!! TGTTGCATAGTCTTTTTCAG+TGG - Chr4:58605974-58605993 MsG0480021497.01.T01:intron 35.0%
AAATACCTGTCGGCAATATG+GGG + Chr4:58604865-58604884 None:intergenic 40.0%
AGATACAAGTGGACAAAGTC+AGG - Chr4:58606460-58606479 MsG0480021497.01.T01:CDS 40.0%
AGTCCAAGTTGTCCTTTCTT+TGG + Chr4:58603787-58603806 None:intergenic 40.0%
ATAAACCAAAGCTAGCATGC+TGG + Chr4:58604788-58604807 None:intergenic 40.0%
ATAATAGACCAAACTGGGCA+AGG + Chr4:58605184-58605203 None:intergenic 40.0%
ATCTAATGTCACCCAATGTG+TGG - Chr4:58605354-58605373 MsG0480021497.01.T01:intron 40.0%
ATTAAATCTGGGCCACACAT+TGG + Chr4:58605369-58605388 None:intergenic 40.0%
CACAGCTCCTCATATAATAC+AGG - Chr4:58606095-58606114 MsG0480021497.01.T01:intron 40.0%
CACTTGCCAACACTTGTAAA+TGG - Chr4:58604757-58604776 MsG0480021497.01.T01:intron 40.0%
CATTTACTGCAGAGTTTAGC+CGG + Chr4:58606179-58606198 None:intergenic 40.0%
CCCGAATTTGACATTGTAGA+TGG + Chr4:58605249-58605268 None:intergenic 40.0%
CTACCAAAGAAAGGACAACT+TGG - Chr4:58603781-58603800 MsG0480021497.01.T01:intron 40.0%
GAAATACCTGTCGGCAATAT+GGG + Chr4:58604866-58604885 None:intergenic 40.0%
GGAGTTGTGCAAAAAATCTG+AGG - Chr4:58606300-58606319 MsG0480021497.01.T01:intron 40.0%
GTCACGGTGACATTAAATCT+GGG + Chr4:58605309-58605290 None:intergenic 40.0%
GTGACATTAGATGTGTTGTG+TGG + Chr4:58605346-58605365 None:intergenic 40.0%
TAAGGGTCATCTCCAATTTC+AGG + Chr4:58605542-58605561 None:intergenic 40.0%
TCAAGATCAACTTCGTATCC+GGG + Chr4:58606135-58606154 None:intergenic 40.0%
TCACTGCTTCTACCAAAGAA+AGG - Chr4:58603772-58603791 MsG0480021497.01.T01:intron 40.0%
TCTACAATGTCAAATTCGGG+TGG - Chr4:58605249-58605268 MsG0480021497.01.T01:intron 40.0%
TGAAATACCTGTCGGCAATA+TGG + Chr4:58604867-58604886 None:intergenic 40.0%
TGGAGGAATGTGAAATTGGA+AGG + Chr4:58603937-58603956 None:intergenic 40.0%
TGGATGCATAAATGCCACTA+AGG + Chr4:58603972-58603991 None:intergenic 40.0%
TGTCACGGTGACATTAAATC+TGG + Chr4:58605308-58605289 None:intergenic 40.0%
TTAAATCTGGGCCACACATT+GGG + Chr4:58605368-58605387 None:intergenic 40.0%
TTCCACTTAGAATTCCAGCT+CGG + Chr4:58605028-58605047 None:intergenic 40.0%
TTCTCCTTCTGCACATTGAT+AGG - Chr4:58605599-58605618 MsG0480021497.01.T01:intron 40.0%
TTCTTTGGTAGAAGCAGTGA+TGG + Chr4:58603772-58603791 None:intergenic 40.0%
! GAACAGTTGCTGCATTTTGA+AGG + Chr4:58604840-58604859 None:intergenic 40.0%
! GTTTGTTGCATCTACGTCTT+TGG + Chr4:58603992-58604011 None:intergenic 40.0%
! TCATCTCCAATTTCAGGTAG+CGG + Chr4:58605536-58605555 None:intergenic 40.0%
!! AAAAGTGAAGGTTTTGGCCT+TGG + Chr4:58603706-58603725 None:intergenic 40.0%
!! AAGAGGTTCTGAGTAAAGTC+TGG + Chr4:58605068-58605087 None:intergenic 40.0%
!! ATAATGGGCAAAGAGAGAAG+AGG + Chr4:58605085-58605104 None:intergenic 40.0%
!! GCATGCTAGCTTTGGTTTAT+CGG - Chr4:58604788-58604807 MsG0480021497.01.T01:intron 40.0%
ACGGAAAATATCACGGGGAA+TGG - Chr4:58604330-58604349 MsG0480021497.01.T01:intron 45.0%
AGATTGGGAAGAACACGAGT+AGG - Chr4:58604273-58604292 MsG0480021497.01.T01:intron 45.0%
AGGCTTCTTTCGACAAAAGG+TGG - Chr4:58606480-58606499 MsG0480021497.01.T01:CDS 45.0%
ATTGCCATTGCCATTGCATC+TGG - Chr4:58605319-58605338 MsG0480021497.01.T01:CDS 45.0%
CAAAAGGTGGTCGAGACTAT+TGG - Chr4:58606493-58606512 MsG0480021497.01.T01:CDS 45.0%
CAGGTGATATATACCAGACC+CGG - Chr4:58606114-58606133 MsG0480021497.01.T01:intron 45.0%
CATCAATCTCTGCGTCCAAA+AGG - Chr4:58604441-58604460 MsG0480021497.01.T01:intron 45.0%
CCGGTGATATTGTGATCAGA+CGG + Chr4:58604307-58604326 None:intergenic 45.0%
CCGTCTGATCACAATATCAC+CGG - Chr4:58604304-58604323 MsG0480021497.01.T01:intron 45.0%
GATTGGGAAGAACACGAGTA+GGG - Chr4:58604274-58604293 MsG0480021497.01.T01:intron 45.0%
GCTACTTGTGCATTCTTACG+TGG + Chr4:58604421-58604440 None:intergenic 45.0%
GTCAGGCTTCTTTCGACAAA+AGG - Chr4:58606477-58606496 MsG0480021497.01.T01:CDS 45.0%
GTGATATTGTGATCAGACGG+CGG + Chr4:58604304-58604323 None:intergenic 45.0%
TCCACTTAGAATTCCAGCTC+GGG + Chr4:58605027-58605046 None:intergenic 45.0%
TGATATTGTGATCAGACGGC+GGG + Chr4:58604303-58604322 None:intergenic 45.0%
TTGCCATTGCCATTGCATCT+GGG - Chr4:58605320-58605339 MsG0480021497.01.T01:CDS 45.0%
TTTGTTGCAGGATACGTGCT+CGG - Chr4:58606279-58606298 MsG0480021497.01.T01:intron 45.0%
! CTTTTGGACGCAGAGATTGA+TGG + Chr4:58604443-58604462 None:intergenic 45.0%
! TAATGCCAGCATGCTAGCTT+TGG - Chr4:58604780-58604799 MsG0480021497.01.T01:intron 45.0%
! TTCCCCGTGATATTTTCCGT+CGG + Chr4:58604330-58604349 None:intergenic 45.0%
!! GCATTTTGAAGGGAAGGATG+TGG + Chr4:58604829-58604848 None:intergenic 45.0%
!! GTTGCTGCATTTTGAAGGGA+AGG + Chr4:58604835-58604854 None:intergenic 45.0%
AAGACGCCGCTACCTGAAAT+TGG - Chr4:58605527-58605546 MsG0480021497.01.T01:intron 50.0%
ACCCGAGCTGGAATTCTAAG+TGG - Chr4:58605023-58605042 MsG0480021497.01.T01:intron 50.0%
ATCAACTTCGTATCCGGGTC+TGG + Chr4:58606130-58606149 None:intergenic 50.0%
ATCACAATATCACCGGCCGA+CGG - Chr4:58604311-58604330 MsG0480021497.01.T01:intron 50.0%
CAATCTCTGCGTCCAAAAGG+TGG - Chr4:58604444-58604463 MsG0480021497.01.T01:intron 50.0%
GCAATGGCAATGGCAATGTG+TGG + Chr4:58605316-58605335 None:intergenic 50.0%
GGACAACTTGGACTCTCCTT+TGG - Chr4:58603793-58603812 MsG0480021497.01.T01:intron 50.0%
GTCAAATTCGGGTGGCACTT+TGG - Chr4:58605257-58605276 MsG0480021497.01.T01:intron 50.0%
TACTGCAGAGTTTAGCCGGA+TGG + Chr4:58606175-58606194 None:intergenic 50.0%
TCTCTATGCCTTGCCCAGTT+TGG - Chr4:58605173-58605192 MsG0480021497.01.T01:intron 50.0%
TTCTTCCCCATATTGCCGAC+AGG - Chr4:58604857-58604876 MsG0480021497.01.T01:intron 50.0%
CCGGCCGACGGAAAATATCA+CGG - Chr4:58604323-58604342 MsG0480021497.01.T01:intron 55.0%
CGGCCGACGGAAAATATCAC+GGG - Chr4:58604324-58604343 MsG0480021497.01.T01:intron 55.0%
GGCCGACGGAAAATATCACG+GGG - Chr4:58604325-58604344 MsG0480021497.01.T01:intron 55.0%
GTTGTGTGGCCCAGATGCAA+TGG + Chr4:58605332-58605351 None:intergenic 55.0%
TCCCTGCTACACTGCTACCA+AGG - Chr4:58603686-58603705 MsG0480021497.01.T01:CDS 55.0%
TGGCCCAGATGCAATGGCAA+TGG + Chr4:58605326-58605345 None:intergenic 55.0%
! CCGTGATATTTTCCGTCGGC+CGG + Chr4:58604326-58604345 None:intergenic 55.0%
! GCCTTGGTAGCAGTGTAGCA+GGG + Chr4:58603690-58603709 None:intergenic 55.0%
! GGCCTTGGTAGCAGTGTAGC+AGG + Chr4:58603691-58603710 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 58603634 58606538 58603634 ID=MsG0480021497.01;Name=MsG0480021497.01
Chr4 mRNA 58603634 58606538 58603634 ID=MsG0480021497.01.T01;Parent=MsG0480021497.01;Name=MsG0480021497.01.T01;_AED=0.48;_eAED=0.51;_QI=0|0.33|0|1|0|0|4|0|163
Chr4 exon 58606311 58606538 58606311 ID=MsG0480021497.01.T01:exon:17349;Parent=MsG0480021497.01.T01
Chr4 exon 58605294 58605358 58605294 ID=MsG0480021497.01.T01:exon:17348;Parent=MsG0480021497.01.T01
Chr4 exon 58604591 58604697 58604591 ID=MsG0480021497.01.T01:exon:17347;Parent=MsG0480021497.01.T01
Chr4 exon 58603634 58603725 58603634 ID=MsG0480021497.01.T01:exon:17346;Parent=MsG0480021497.01.T01
Chr4 CDS 58606311 58606538 58606311 ID=MsG0480021497.01.T01:cds;Parent=MsG0480021497.01.T01
Chr4 CDS 58605294 58605358 58605294 ID=MsG0480021497.01.T01:cds;Parent=MsG0480021497.01.T01
Chr4 CDS 58604591 58604697 58604591 ID=MsG0480021497.01.T01:cds;Parent=MsG0480021497.01.T01
Chr4 CDS 58603634 58603725 58603634 ID=MsG0480021497.01.T01:cds;Parent=MsG0480021497.01.T01
Gene Sequence

>MsG0480021497.01.T01

ATGGCAAAATCTGGAAATTTGGTATCCAAAGAAGCTTCAGCTCAATATTCAATCCCTGCTACACTGCTACCAAGGCCAAAACCTTCACTTTTCTCTCTCAGTTTCACACTTACAATAATACTAGTGGTAGTGCAACCATCACTGCTTCTACCAAAGAAAGGACAACTTGGACTCTCCTTTGGTAACTCGATATACAGTTTCCCTTTCCCTTCTCCTTACTTTAATTCTATGCAAGAATCACCACATCCTTCCCTTCAAAATGCAGCAACTGTTCTTCCCCATATTGCCGACAGATTGACACAAATTAACGTATGGGTTCTCAGGGCTACAAATAGAGATAAGCGTAAGACGCCGCTACCTGAAATTGGAGATGACCCTTATGTAAGTCTCAAATCAATTATTGTTTTGTTTTCAGATACAAGTGGACAAAGTCAGGCTTCTTTCGACAAAAGGTGGTCGAGACTATTGGAACTAAAGAAAACAATTGTATGA

Protein sequence

>MsG0480021497.01.T01

MAKSGNLVSKEASAQYSIPATLLPRPKPSLFSLSFTLTIILVVVQPSLLLPKKGQLGLSFGNSIYSFPFPSPYFNSMQESPHPSLQNAATVLPHIADRLTQINVWVLRATNRDKRKTPLPEIGDDPYVSLKSIIVLFSDTSGQSQASFDKRWSRLLELKKTIV*