Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000290 | RHN66812.1 | 88.288 | 333 | 36 | 1 | 1 | 330 | 38 | 370 | 0.0 | 614 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000290 | sp|Q5NUF4|HIDM_GLYEC | 55.521 | 317 | 139 | 1 | 14 | 328 | 11 | 327 | 3.53e-125 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000290 | A0A396IMM3 | 88.288 | 333 | 36 | 1 | 1 | 330 | 38 | 370 | 0.0 | 614 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000290 | Msa0035290 | 0.811881 | 5.608301e-51 | -8.615850e-47 |
| Msa0000290 | Msa0035400 | 0.821319 | 4.302173e-53 | -8.615850e-47 |
| Msa0000290 | Msa0129360 | 0.814973 | 1.172806e-51 | -8.615850e-47 |
| Msa0000290 | Msa0746980 | 0.813657 | 2.290303e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000290 | MtrunA17_Chr3g0095711 | 88.288 | 333 | 36 | 1 | 1 | 330 | 38 | 370 | 0.0 | 614 |
| Msa0000290 | MtrunA17_Chr8g0353951 | 83.030 | 330 | 56 | 0 | 1 | 330 | 1 | 330 | 0.0 | 538 |
| Msa0000290 | MtrunA17_Chr1g0205781 | 62.305 | 321 | 115 | 4 | 12 | 330 | 8 | 324 | 1.81e-130 | 375 |
| Msa0000290 | MtrunA17_Chr7g0233871 | 56.757 | 333 | 135 | 4 | 1 | 330 | 1 | 327 | 2.42e-128 | 369 |
| Msa0000290 | MtrunA17_Chr1g0205871 | 54.717 | 318 | 142 | 1 | 13 | 328 | 5 | 322 | 1.17e-123 | 357 |
| Msa0000290 | MtrunA17_Chr1g0205791 | 60.188 | 319 | 121 | 3 | 12 | 330 | 6 | 318 | 7.20e-122 | 354 |
| Msa0000290 | MtrunA17_Chr5g0394251 | 50.453 | 331 | 159 | 2 | 5 | 330 | 2 | 332 | 1.35e-121 | 352 |
| Msa0000290 | MtrunA17_Chr5g0394211 | 52.978 | 319 | 145 | 3 | 14 | 328 | 41 | 358 | 5.56e-121 | 352 |
| Msa0000290 | MtrunA17_Chr5g0394241 | 50.152 | 329 | 156 | 3 | 7 | 330 | 3 | 328 | 1.39e-109 | 322 |
| Msa0000290 | MtrunA17_Chr4g0045131 | 45.732 | 328 | 170 | 6 | 3 | 329 | 35 | 355 | 9.74e-98 | 293 |
| Msa0000290 | MtrunA17_Chr4g0045121 | 45.679 | 324 | 168 | 6 | 8 | 330 | 3 | 319 | 1.65e-90 | 273 |
| Msa0000290 | MtrunA17_Chr4g0045181 | 40.810 | 321 | 179 | 7 | 13 | 329 | 5 | 318 | 1.68e-83 | 255 |
| Msa0000290 | MtrunA17_Chr3g0133701 | 40.673 | 327 | 179 | 6 | 6 | 330 | 3 | 316 | 4.88e-82 | 251 |
| Msa0000290 | MtrunA17_Chr7g0235741 | 40.810 | 321 | 177 | 8 | 13 | 328 | 37 | 349 | 1.39e-81 | 251 |
| Msa0000290 | MtrunA17_Chr4g0045191 | 41.456 | 316 | 159 | 7 | 13 | 328 | 15 | 304 | 2.68e-75 | 234 |
| Msa0000290 | MtrunA17_Chr7g0214851 | 35.390 | 308 | 172 | 10 | 23 | 310 | 28 | 328 | 5.26e-48 | 164 |
| Msa0000290 | MtrunA17_Chr1g0149271 | 35.890 | 326 | 179 | 12 | 16 | 330 | 3 | 309 | 1.07e-47 | 162 |
| Msa0000290 | MtrunA17_Chr1g0210121 | 32.508 | 323 | 200 | 10 | 16 | 329 | 26 | 339 | 3.70e-44 | 154 |
| Msa0000290 | MtrunA17_Chr4g0025291 | 31.902 | 326 | 206 | 9 | 12 | 330 | 1 | 317 | 1.21e-43 | 152 |
| Msa0000290 | MtrunA17_Chr7g0268091 | 31.034 | 319 | 209 | 8 | 16 | 330 | 7 | 318 | 2.28e-41 | 146 |
| Msa0000290 | MtrunA17_Chr3g0081521 | 32.915 | 319 | 186 | 11 | 14 | 311 | 5 | 316 | 2.55e-40 | 144 |
| Msa0000290 | MtrunA17_Chr6g0474541 | 32.313 | 294 | 170 | 7 | 29 | 313 | 53 | 326 | 3.41e-38 | 139 |
| Msa0000290 | MtrunA17_Chr1g0204201 | 33.449 | 287 | 157 | 11 | 24 | 290 | 19 | 291 | 3.50e-38 | 138 |
| Msa0000290 | MtrunA17_Chr1g0204211 | 35.821 | 268 | 136 | 12 | 29 | 278 | 43 | 292 | 1.73e-37 | 137 |
| Msa0000290 | MtrunA17_Chr8g0351211 | 32.558 | 301 | 172 | 10 | 24 | 300 | 9 | 302 | 3.77e-35 | 130 |
| Msa0000290 | MtrunA17_Chr6g0474631 | 33.333 | 309 | 176 | 15 | 29 | 322 | 26 | 319 | 2.50e-33 | 125 |
| Msa0000290 | MtrunA17_Chr1g0196311 | 33.083 | 266 | 146 | 7 | 47 | 300 | 86 | 331 | 5.11e-33 | 125 |
| Msa0000290 | MtrunA17_Chr8g0351201 | 31.176 | 340 | 206 | 12 | 1 | 330 | 1 | 322 | 1.17e-31 | 121 |
| Msa0000290 | MtrunA17_Chr6g0474471 | 30.195 | 308 | 180 | 11 | 29 | 311 | 25 | 322 | 2.91e-30 | 117 |
| Msa0000290 | MtrunA17_Chr1g0191301 | 28.758 | 306 | 179 | 9 | 43 | 328 | 54 | 340 | 2.97e-30 | 117 |
| Msa0000290 | MtrunA17_Chr7g0259161 | 30.070 | 286 | 153 | 11 | 59 | 311 | 69 | 340 | 6.22e-30 | 117 |
| Msa0000290 | MtrunA17_Chr6g0474411 | 29.936 | 314 | 193 | 10 | 28 | 328 | 27 | 326 | 7.30e-30 | 116 |
| Msa0000290 | MtrunA17_Chr6g0477251 | 28.231 | 294 | 174 | 8 | 48 | 322 | 607 | 882 | 5.43e-28 | 114 |
| Msa0000290 | MtrunA17_Chr6g0477251 | 27.551 | 294 | 176 | 8 | 48 | 322 | 53 | 328 | 9.65e-28 | 114 |
| Msa0000290 | MtrunA17_Chr6g0477161 | 29.655 | 290 | 175 | 8 | 48 | 322 | 54 | 329 | 7.20e-28 | 114 |
| Msa0000290 | MtrunA17_Chr6g0477161 | 27.682 | 289 | 183 | 9 | 48 | 322 | 402 | 678 | 4.54e-27 | 111 |
| Msa0000290 | MtrunA17_Chr6g0474491 | 31.208 | 298 | 166 | 13 | 29 | 299 | 24 | 309 | 1.43e-27 | 110 |
| Msa0000290 | MtrunA17_Chr6g0477271 | 28.571 | 259 | 164 | 7 | 41 | 290 | 70 | 316 | 4.70e-27 | 109 |
| Msa0000290 | MtrunA17_Chr6g0477231 | 27.458 | 295 | 179 | 10 | 48 | 322 | 51 | 330 | 2.59e-26 | 107 |
| Msa0000290 | MtrunA17_Chr8g0351171 | 31.939 | 263 | 158 | 10 | 29 | 278 | 17 | 271 | 3.38e-26 | 106 |
| Msa0000290 | MtrunA17_Chr6g0458881 | 29.496 | 278 | 153 | 8 | 70 | 310 | 146 | 417 | 7.77e-24 | 101 |
| Msa0000290 | MtrunA17_Chr7g0228721 | 29.930 | 284 | 153 | 7 | 68 | 310 | 152 | 430 | 1.35e-23 | 100 |
| Msa0000290 | MtrunA17_Chr6g0477241 | 30.601 | 183 | 109 | 4 | 48 | 221 | 64 | 237 | 1.37e-22 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000290 | AT1G47480.1 | 40.187 | 321 | 181 | 5 | 10 | 330 | 2 | 311 | 2.62e-81 | 249 |
| Msa0000290 | AT1G19190.1 | 41.562 | 320 | 175 | 6 | 15 | 330 | 4 | 315 | 9.98e-81 | 248 |
| Msa0000290 | AT3G48700.1 | 39.877 | 326 | 182 | 6 | 15 | 329 | 4 | 326 | 1.24e-77 | 241 |
| Msa0000290 | AT2G03550.1 | 42.208 | 308 | 167 | 8 | 25 | 330 | 14 | 312 | 4.24e-76 | 236 |
| Msa0000290 | AT3G48690.1 | 38.941 | 321 | 187 | 5 | 15 | 329 | 4 | 321 | 7.66e-73 | 228 |
| Msa0000290 | AT1G49650.1 | 39.871 | 311 | 176 | 7 | 23 | 328 | 68 | 372 | 2.35e-70 | 223 |
| Msa0000290 | AT1G49660.1 | 39.375 | 320 | 182 | 8 | 15 | 328 | 4 | 317 | 1.03e-69 | 220 |
| Msa0000290 | AT1G49640.1 | 37.500 | 312 | 178 | 7 | 23 | 328 | 13 | 313 | 1.79e-69 | 219 |
| Msa0000290 | AT2G45600.1 | 32.492 | 317 | 187 | 10 | 24 | 329 | 16 | 316 | 1.20e-38 | 140 |
| Msa0000290 | AT1G68620.1 | 30.921 | 304 | 183 | 10 | 16 | 310 | 23 | 308 | 1.80e-37 | 137 |
| Msa0000290 | AT5G16080.1 | 30.120 | 332 | 197 | 12 | 16 | 329 | 28 | 342 | 1.34e-36 | 135 |
| Msa0000290 | AT5G27320.1 | 30.545 | 275 | 160 | 7 | 43 | 300 | 54 | 314 | 4.15e-33 | 125 |
| Msa0000290 | AT3G05120.1 | 31.502 | 273 | 154 | 7 | 47 | 300 | 58 | 316 | 2.01e-32 | 124 |
| Msa0000290 | AT5G23530.1 | 29.487 | 312 | 192 | 9 | 29 | 330 | 35 | 328 | 1.66e-30 | 118 |
| Msa0000290 | AT3G63010.1 | 29.897 | 291 | 178 | 8 | 47 | 329 | 70 | 342 | 3.68e-30 | 118 |
| Msa0000290 | AT5G06570.1 | 27.744 | 328 | 212 | 9 | 15 | 328 | 9 | 325 | 2.65e-29 | 115 |
| Msa0000290 | AT5G06570.2 | 27.744 | 328 | 212 | 9 | 15 | 328 | 9 | 325 | 2.65e-29 | 115 |
| Msa0000290 | AT5G06570.3 | 28.438 | 320 | 204 | 9 | 23 | 328 | 32 | 340 | 3.02e-29 | 115 |
| Msa0000290 | AT5G06570.4 | 28.438 | 320 | 204 | 9 | 23 | 328 | 32 | 340 | 3.02e-29 | 115 |
| Msa0000290 | AT5G62180.1 | 34.025 | 241 | 121 | 10 | 54 | 273 | 48 | 271 | 1.52e-28 | 113 |
| Msa0000290 | AT2G45610.1 | 32.593 | 270 | 158 | 11 | 24 | 278 | 17 | 277 | 5.54e-27 | 108 |
| Msa0000290 | AT5G14310.1 | 28.369 | 282 | 153 | 9 | 70 | 310 | 140 | 413 | 1.60e-21 | 95.1 |
| Msa0000290 | AT3G27320.2 | 29.787 | 282 | 153 | 9 | 68 | 310 | 120 | 395 | 3.99e-21 | 94.0 |
| Msa0000290 | AT3G27320.1 | 29.787 | 282 | 153 | 9 | 68 | 310 | 152 | 427 | 6.40e-21 | 93.6 |
Find 83 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAAATAGTTACCGAATT+TGG | 0.139042 | 1_1:+1315741 | Msa0000290:CDS |
| ATAAACCAAGATTGGTAATT+TGG | 0.152767 | 1_1:-1315937 | None:intergenic |
| CCTTATGATGTTAAAATATT+AGG | 0.173634 | 1_1:+1316278 | Msa0000290:CDS |
| AGAATTATTATTTGTGTTGC+TGG | 0.269306 | 1_1:+1316491 | Msa0000290:CDS |
| ATCTTGCCACTCTCAGATTC+TGG | 0.270525 | 1_1:-1316635 | None:intergenic |
| TAACCCTTTGATTAATCCTT+TGG | 0.292699 | 1_1:+1316430 | Msa0000290:CDS |
| TCAATTCCAAAAGGTGCATT+TGG | 0.294236 | 1_1:-1316407 | None:intergenic |
| TTTCCATAAGGTTTGGCATT+TGG | 0.301055 | 1_1:+1316379 | Msa0000290:CDS |
| TTCAAAGCTCTAACCCTATT+GGG | 0.301639 | 1_1:+1316324 | Msa0000290:CDS |
| ACACCAAATGCCAAACCTTA+TGG | 0.304815 | 1_1:-1316382 | None:intergenic |
| GTGTGGGATTACTATGTCTT+TGG | 0.311851 | 1_1:-1315862 | None:intergenic |
| TTTCAAAGCTCTAACCCTAT+TGG | 0.312617 | 1_1:+1316323 | Msa0000290:CDS |
| TGTTCAGTCAACCATGGTTC+TGG | 0.312741 | 1_1:-1316164 | None:intergenic |
| GGGATAGAGGAGTTTGGTAT+TGG | 0.315868 | 1_1:+1316528 | Msa0000290:CDS |
| ACCTTCCAAATTACCAATCT+TGG | 0.323958 | 1_1:+1315932 | Msa0000290:CDS |
| TTGGATGAAAGTCCAGTGTT+TGG | 0.338370 | 1_1:-1315843 | None:intergenic |
| TAGTGGGTGGAATGGGAAAT+TGG | 0.342499 | 1_1:+1316565 | Msa0000290:CDS |
| AACCCTTTGATTAATCCTTT+GGG | 0.363602 | 1_1:+1316431 | Msa0000290:CDS |
| GTGTACCCAAATGCACCTTT+TGG | 0.365720 | 1_1:+1316401 | Msa0000290:CDS |
| ATAATAGGTTCTGACCCAAT+AGG | 0.376755 | 1_1:-1316338 | None:intergenic |
| CAAAGATATTCAAATGTTCA+TGG | 0.384005 | 1_1:-1316007 | None:intergenic |
| GGATAGAGGAGTTTGGTATT+GGG | 0.384087 | 1_1:+1316529 | Msa0000290:CDS |
| TTGCTGGAAAAGATAAGTTA+AGG | 0.384390 | 1_1:+1316507 | Msa0000290:CDS |
| TGAGTGCAGCCCAACATTCA+TGG | 0.401278 | 1_1:-1316103 | None:intergenic |
| CCATGGTTCTGGATTGTTGA+TGG | 0.407203 | 1_1:-1316153 | None:intergenic |
| TGGATGAAAGTCCAGTGTTT+GGG | 0.407811 | 1_1:-1315842 | None:intergenic |
| TTGAGAGATGGAGGAACAAA+TGG | 0.411434 | 1_1:-1315816 | None:intergenic |
| CAATTCCAAAAGGTGCATTT+GGG | 0.417461 | 1_1:-1316406 | None:intergenic |
| TCACGACCCTTCTTCACTCT+TGG | 0.420561 | 1_1:-1316685 | None:intergenic |
| AGTTAAGGGATAGAGGAGTT+TGG | 0.421081 | 1_1:+1316522 | Msa0000290:CDS |
| GGGTTAGAGCTTTGAAAATA+CGG | 0.423369 | 1_1:-1316317 | None:intergenic |
| CTCCCAAAGGATTAATCAAA+GGG | 0.429238 | 1_1:-1316433 | None:intergenic |
| AAAGATAAGTTAAGGGATAG+AGG | 0.434645 | 1_1:+1316515 | Msa0000290:CDS |
| AATGTTGGGCTGCACTCAAA+TGG | 0.450527 | 1_1:+1316108 | Msa0000290:CDS |
| GGGAGAAGGTGCACCTAGCT+TGG | 0.450943 | 1_1:+1316451 | Msa0000290:CDS |
| TAATAGGTTCTGACCCAATA+GGG | 0.452643 | 1_1:-1316337 | None:intergenic |
| CCATGAAAATAAACCAAGAT+TGG | 0.452740 | 1_1:-1315945 | None:intergenic |
| ACGAACGAATGTTCCAAATT+CGG | 0.466966 | 1_1:-1315754 | None:intergenic |
| TCTTCGAATCCGCATTCTCA+AGG | 0.472330 | 1_1:+1315979 | Msa0000290:CDS |
| TGGGAATGTGTGAAGAATAG+TGG | 0.473385 | 1_1:+1316548 | Msa0000290:CDS |
| TGCTGGAAAAGATAAGTTAA+GGG | 0.475820 | 1_1:+1316508 | Msa0000290:CDS |
| CTGCATGTTACCATGAATGT+TGG | 0.481167 | 1_1:+1316093 | Msa0000290:CDS |
| TTGATTAATCCTTTGGGAGA+AGG | 0.485999 | 1_1:+1316437 | Msa0000290:CDS |
| TGCATGTTACCATGAATGTT+GGG | 0.489395 | 1_1:+1316094 | Msa0000290:CDS |
| TTCATTGGTGGTGATAGTGC+TGG | 0.498065 | 1_1:+1316206 | Msa0000290:CDS |
| TGAAGAATAGTGGGTGGAAT+GGG | 0.506837 | 1_1:+1316558 | Msa0000290:CDS |
| TGAGAGATGGAGGAACAAAT+GGG | 0.508662 | 1_1:-1315815 | None:intergenic |
| CAAGATATTGATCCAACGAT+TGG | 0.511817 | 1_1:+1316652 | Msa0000290:CDS |
| ATGAAATTGTGGGGTTGTGT+GGG | 0.513029 | 1_1:-1315878 | None:intergenic |
| TCTCCCAAAGGATTAATCAA+AGG | 0.514419 | 1_1:-1316434 | None:intergenic |
| ACCAAGATTGGTAATTTGGA+AGG | 0.529525 | 1_1:-1315933 | None:intergenic |
| CAACATTCATGGTAACATGC+AGG | 0.529857 | 1_1:-1316092 | None:intergenic |
| AGATTGGTAATTTGGAAGGT+GGG | 0.537544 | 1_1:-1315929 | None:intergenic |
| AAGATTGGTAATTTGGAAGG+TGG | 0.546807 | 1_1:-1315930 | None:intergenic |
| AAAGGGTTATCAATTCCAAA+AGG | 0.547123 | 1_1:-1316416 | None:intergenic |
| GGACAAAACTAACCAATCGT+TGG | 0.553376 | 1_1:-1316664 | None:intergenic |
| GATGAAATTGTGGGGTTGTG+TGG | 0.556861 | 1_1:-1315879 | None:intergenic |
| GTGTTTGGGTCATTGAGAGA+TGG | 0.564317 | 1_1:-1315828 | None:intergenic |
| TCATGGTAACATGCAGGGAG+AGG | 0.566967 | 1_1:-1316086 | None:intergenic |
| CATAACGTTGCAATTCAAGC+TGG | 0.567363 | 1_1:+1316242 | Msa0000290:CDS |
| GTATATGCGAGATGAAATTG+TGG | 0.570008 | 1_1:-1315889 | None:intergenic |
| TCTCTCAATGACCCAAACAC+TGG | 0.578827 | 1_1:+1315831 | Msa0000290:CDS |
| GGGAATGTGTGAAGAATAGT+GGG | 0.579984 | 1_1:+1316549 | Msa0000290:CDS |
| CTAGGTGCACCTTCTCCCAA+AGG | 0.593677 | 1_1:-1316446 | None:intergenic |
| GGAACAAATGGGGTTTGTGA+TGG | 0.594884 | 1_1:-1315804 | None:intergenic |
| ATGTTGGGCTGCACTCAAAT+GGG | 0.596239 | 1_1:+1316109 | Msa0000290:CDS |
| GTGAAGAATAGTGGGTGGAA+TGG | 0.599012 | 1_1:+1316557 | Msa0000290:CDS |
| AACATTCATGGTAACATGCA+GGG | 0.601712 | 1_1:-1316091 | None:intergenic |
| GTTTAAGCAAATGATAAACA+TGG | 0.602550 | 1_1:-1316613 | None:intergenic |
| TTCGTTCGTATCTTTAGCGA+CGG | 0.603662 | 1_1:+1315768 | Msa0000290:CDS |
| TATATGCGAGATGAAATTGT+GGG | 0.605189 | 1_1:-1315888 | None:intergenic |
| GGTAACTATTTCTTTAGCGA+CGG | 0.610326 | 1_1:-1315733 | None:intergenic |
| ATGGTACAACCTTGAGAATG+CGG | 0.610408 | 1_1:-1315988 | None:intergenic |
| GAACCATGGTTGACTGAACA+TGG | 0.614735 | 1_1:+1316167 | Msa0000290:CDS |
| CATGCAGGGAGAGGATACTC+AGG | 0.615881 | 1_1:-1316077 | None:intergenic |
| TTTGGGTCATTGAGAGATGG+AGG | 0.615987 | 1_1:-1315825 | None:intergenic |
| CTTAAACCAGAATCTGAGAG+TGG | 0.624713 | 1_1:+1316629 | Msa0000290:CDS |
| GGAGAGGATACTCAGGAGCA+AGG | 0.625987 | 1_1:-1316070 | None:intergenic |
| TCACCATGTTCAGTCAACCA+TGG | 0.677051 | 1_1:-1316170 | None:intergenic |
| GAGAGATGGAGGAACAAATG+GGG | 0.687686 | 1_1:-1315814 | None:intergenic |
| CCATCAACAATCCAGAACCA+TGG | 0.700349 | 1_1:+1316153 | Msa0000290:CDS |
| AATGTGTGAAGAATAGTGGG+TGG | 0.742181 | 1_1:+1316552 | Msa0000290:CDS |
| ATATGCGAGATGAAATTGTG+GGG | 0.782357 | 1_1:-1315887 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CCTAATATTTTAACATCATA+AGG | - | chr1_1:1316281-1316300 | None:intergenic | 20.0% |
| !! | CCTTATGATGTTAAAATATT+AGG | + | chr1_1:1316278-1316297 | Msa0000290:CDS | 20.0% |
| !!! | TTATGGAAAAGATTATTTTC+AGG | - | chr1_1:1316368-1316387 | None:intergenic | 20.0% |
| !!! | TGAAAATAATCTTTTCCATA+AGG | + | chr1_1:1316367-1316386 | Msa0000290:CDS | 20.0% |
| !!! | CCTAATATTTTAACATCATA+AGG | - | chr1_1:1316281-1316300 | None:intergenic | 20.0% |
| !! | CCTTATGATGTTAAAATATT+AGG | + | chr1_1:1316278-1316297 | Msa0000290:CDS | 20.0% |
| !!! | TTATGGAAAAGATTATTTTC+AGG | - | chr1_1:1316368-1316387 | None:intergenic | 20.0% |
| !!! | TGAAAATAATCTTTTCCATA+AGG | + | chr1_1:1316367-1316386 | Msa0000290:CDS | 20.0% |
| ! | AAAGAAATAGTTACCGAATT+TGG | + | chr1_1:1315741-1315760 | Msa0000290:CDS | 25.0% |
| !! | ATAAACCAAGATTGGTAATT+TGG | - | chr1_1:1315940-1315959 | None:intergenic | 25.0% |
| ! | CAAAGATATTCAAATGTTCA+TGG | - | chr1_1:1316010-1316029 | None:intergenic | 25.0% |
| !!! | GATTTTGAGAAAGTTTTCAT+TGG | + | chr1_1:1316191-1316210 | Msa0000290:CDS | 25.0% |
| !!! | TTATTTTCAGGCTCAATAAT+AGG | - | chr1_1:1316356-1316375 | None:intergenic | 25.0% |
| !! | ATAATCTTTTCCATAAGGTT+TGG | + | chr1_1:1316372-1316391 | Msa0000290:CDS | 25.0% |
| ! | AGAATTATTATTTGTGTTGC+TGG | + | chr1_1:1316491-1316510 | Msa0000290:CDS | 25.0% |
| ! | GTTTAAGCAAATGATAAACA+TGG | - | chr1_1:1316616-1316635 | None:intergenic | 25.0% |
| ! | AAAGAAATAGTTACCGAATT+TGG | + | chr1_1:1315741-1315760 | Msa0000290:CDS | 25.0% |
| !! | ATAAACCAAGATTGGTAATT+TGG | - | chr1_1:1315940-1315959 | None:intergenic | 25.0% |
| ! | CAAAGATATTCAAATGTTCA+TGG | - | chr1_1:1316010-1316029 | None:intergenic | 25.0% |
| !!! | GATTTTGAGAAAGTTTTCAT+TGG | + | chr1_1:1316191-1316210 | Msa0000290:CDS | 25.0% |
| !!! | TTATTTTCAGGCTCAATAAT+AGG | - | chr1_1:1316356-1316375 | None:intergenic | 25.0% |
| !! | ATAATCTTTTCCATAAGGTT+TGG | + | chr1_1:1316372-1316391 | Msa0000290:CDS | 25.0% |
| ! | AGAATTATTATTTGTGTTGC+TGG | + | chr1_1:1316491-1316510 | Msa0000290:CDS | 25.0% |
| ! | GTTTAAGCAAATGATAAACA+TGG | - | chr1_1:1316616-1316635 | None:intergenic | 25.0% |
| TATATGCGAGATGAAATTGT+GGG | - | chr1_1:1315891-1315910 | None:intergenic | 30.0% | |
| CCATGAAAATAAACCAAGAT+TGG | - | chr1_1:1315948-1315967 | None:intergenic | 30.0% | |
| !! | CCAATCTTGGTTTATTTTCA+TGG | + | chr1_1:1315945-1315964 | Msa0000290:CDS | 30.0% |
| !! | ATCTTGGTTTATTTTCATGG+CGG | + | chr1_1:1315948-1315967 | Msa0000290:CDS | 30.0% |
| ! | TTTGAGAAAGTTTTCATTGG+TGG | + | chr1_1:1316194-1316213 | Msa0000290:CDS | 30.0% |
| AAAGGGTTATCAATTCCAAA+AGG | - | chr1_1:1316419-1316438 | None:intergenic | 30.0% | |
| TAACCCTTTGATTAATCCTT+TGG | + | chr1_1:1316430-1316449 | Msa0000290:CDS | 30.0% | |
| AACCCTTTGATTAATCCTTT+GGG | + | chr1_1:1316431-1316450 | Msa0000290:CDS | 30.0% | |
| TTGCTGGAAAAGATAAGTTA+AGG | + | chr1_1:1316507-1316526 | Msa0000290:CDS | 30.0% | |
| TGCTGGAAAAGATAAGTTAA+GGG | + | chr1_1:1316508-1316527 | Msa0000290:CDS | 30.0% | |
| AAAGATAAGTTAAGGGATAG+AGG | + | chr1_1:1316515-1316534 | Msa0000290:CDS | 30.0% | |
| TATATGCGAGATGAAATTGT+GGG | - | chr1_1:1315891-1315910 | None:intergenic | 30.0% | |
| CCATGAAAATAAACCAAGAT+TGG | - | chr1_1:1315948-1315967 | None:intergenic | 30.0% | |
| !! | CCAATCTTGGTTTATTTTCA+TGG | + | chr1_1:1315945-1315964 | Msa0000290:CDS | 30.0% |
| !! | ATCTTGGTTTATTTTCATGG+CGG | + | chr1_1:1315948-1315967 | Msa0000290:CDS | 30.0% |
| ! | TTTGAGAAAGTTTTCATTGG+TGG | + | chr1_1:1316194-1316213 | Msa0000290:CDS | 30.0% |
| AAAGGGTTATCAATTCCAAA+AGG | - | chr1_1:1316419-1316438 | None:intergenic | 30.0% | |
| TAACCCTTTGATTAATCCTT+TGG | + | chr1_1:1316430-1316449 | Msa0000290:CDS | 30.0% | |
| AACCCTTTGATTAATCCTTT+GGG | + | chr1_1:1316431-1316450 | Msa0000290:CDS | 30.0% | |
| TTGCTGGAAAAGATAAGTTA+AGG | + | chr1_1:1316507-1316526 | Msa0000290:CDS | 30.0% | |
| TGCTGGAAAAGATAAGTTAA+GGG | + | chr1_1:1316508-1316527 | Msa0000290:CDS | 30.0% | |
| AAAGATAAGTTAAGGGATAG+AGG | + | chr1_1:1316515-1316534 | Msa0000290:CDS | 30.0% | |
| ! | ATTTCTTTAGCGACGGTTTT+TGG | - | chr1_1:1315729-1315748 | None:intergenic | 35.0% |
| ! | GGTAACTATTTCTTTAGCGA+CGG | - | chr1_1:1315736-1315755 | None:intergenic | 35.0% |
| ACGAACGAATGTTCCAAATT+CGG | - | chr1_1:1315757-1315776 | None:intergenic | 35.0% | |
| ATATGCGAGATGAAATTGTG+GGG | - | chr1_1:1315890-1315909 | None:intergenic | 35.0% | |
| GTATATGCGAGATGAAATTG+TGG | - | chr1_1:1315892-1315911 | None:intergenic | 35.0% | |
| ! | AGATTGGTAATTTGGAAGGT+GGG | - | chr1_1:1315932-1315951 | None:intergenic | 35.0% |
| ! | AAGATTGGTAATTTGGAAGG+TGG | - | chr1_1:1315933-1315952 | None:intergenic | 35.0% |
| ACCTTCCAAATTACCAATCT+TGG | + | chr1_1:1315932-1315951 | Msa0000290:CDS | 35.0% | |
| ! | ACCAAGATTGGTAATTTGGA+AGG | - | chr1_1:1315936-1315955 | None:intergenic | 35.0% |
| AACATTCATGGTAACATGCA+GGG | - | chr1_1:1316094-1316113 | None:intergenic | 35.0% | |
| TGCATGTTACCATGAATGTT+GGG | + | chr1_1:1316094-1316113 | Msa0000290:CDS | 35.0% | |
| !! | GGGTTAGAGCTTTGAAAATA+CGG | - | chr1_1:1316320-1316339 | None:intergenic | 35.0% |
| ! | TTTCAAAGCTCTAACCCTAT+TGG | + | chr1_1:1316323-1316342 | Msa0000290:CDS | 35.0% |
| ! | TTCAAAGCTCTAACCCTATT+GGG | + | chr1_1:1316324-1316343 | Msa0000290:CDS | 35.0% |
| ! | TAATAGGTTCTGACCCAATA+GGG | - | chr1_1:1316340-1316359 | None:intergenic | 35.0% |
| ! | ATAATAGGTTCTGACCCAAT+AGG | - | chr1_1:1316341-1316360 | None:intergenic | 35.0% |
| TTTCCATAAGGTTTGGCATT+TGG | + | chr1_1:1316379-1316398 | Msa0000290:CDS | 35.0% | |
| ! | CAATTCCAAAAGGTGCATTT+GGG | - | chr1_1:1316409-1316428 | None:intergenic | 35.0% |
| ! | TCAATTCCAAAAGGTGCATT+TGG | - | chr1_1:1316410-1316429 | None:intergenic | 35.0% |
| CTCCCAAAGGATTAATCAAA+GGG | - | chr1_1:1316436-1316455 | None:intergenic | 35.0% | |
| TCTCCCAAAGGATTAATCAA+AGG | - | chr1_1:1316437-1316456 | None:intergenic | 35.0% | |
| ! | TTGATTAATCCTTTGGGAGA+AGG | + | chr1_1:1316437-1316456 | Msa0000290:CDS | 35.0% |
| CAAGATATTGATCCAACGAT+TGG | + | chr1_1:1316652-1316671 | Msa0000290:CDS | 35.0% | |
| ! | ATTTCTTTAGCGACGGTTTT+TGG | - | chr1_1:1315729-1315748 | None:intergenic | 35.0% |
| ! | GGTAACTATTTCTTTAGCGA+CGG | - | chr1_1:1315736-1315755 | None:intergenic | 35.0% |
| ACGAACGAATGTTCCAAATT+CGG | - | chr1_1:1315757-1315776 | None:intergenic | 35.0% | |
| ATATGCGAGATGAAATTGTG+GGG | - | chr1_1:1315890-1315909 | None:intergenic | 35.0% | |
| GTATATGCGAGATGAAATTG+TGG | - | chr1_1:1315892-1315911 | None:intergenic | 35.0% | |
| ! | AGATTGGTAATTTGGAAGGT+GGG | - | chr1_1:1315932-1315951 | None:intergenic | 35.0% |
| ! | AAGATTGGTAATTTGGAAGG+TGG | - | chr1_1:1315933-1315952 | None:intergenic | 35.0% |
| ACCTTCCAAATTACCAATCT+TGG | + | chr1_1:1315932-1315951 | Msa0000290:CDS | 35.0% | |
| ! | ACCAAGATTGGTAATTTGGA+AGG | - | chr1_1:1315936-1315955 | None:intergenic | 35.0% |
| AACATTCATGGTAACATGCA+GGG | - | chr1_1:1316094-1316113 | None:intergenic | 35.0% | |
| TGCATGTTACCATGAATGTT+GGG | + | chr1_1:1316094-1316113 | Msa0000290:CDS | 35.0% | |
| !! | GGGTTAGAGCTTTGAAAATA+CGG | - | chr1_1:1316320-1316339 | None:intergenic | 35.0% |
| ! | TTTCAAAGCTCTAACCCTAT+TGG | + | chr1_1:1316323-1316342 | Msa0000290:CDS | 35.0% |
| ! | TTCAAAGCTCTAACCCTATT+GGG | + | chr1_1:1316324-1316343 | Msa0000290:CDS | 35.0% |
| ! | TAATAGGTTCTGACCCAATA+GGG | - | chr1_1:1316340-1316359 | None:intergenic | 35.0% |
| ! | ATAATAGGTTCTGACCCAAT+AGG | - | chr1_1:1316341-1316360 | None:intergenic | 35.0% |
| TTTCCATAAGGTTTGGCATT+TGG | + | chr1_1:1316379-1316398 | Msa0000290:CDS | 35.0% | |
| ! | CAATTCCAAAAGGTGCATTT+GGG | - | chr1_1:1316409-1316428 | None:intergenic | 35.0% |
| ! | TCAATTCCAAAAGGTGCATT+TGG | - | chr1_1:1316410-1316429 | None:intergenic | 35.0% |
| CTCCCAAAGGATTAATCAAA+GGG | - | chr1_1:1316436-1316455 | None:intergenic | 35.0% | |
| TCTCCCAAAGGATTAATCAA+AGG | - | chr1_1:1316437-1316456 | None:intergenic | 35.0% | |
| ! | TTGATTAATCCTTTGGGAGA+AGG | + | chr1_1:1316437-1316456 | Msa0000290:CDS | 35.0% |
| CAAGATATTGATCCAACGAT+TGG | + | chr1_1:1316652-1316671 | Msa0000290:CDS | 35.0% | |
| TTCGTTCGTATCTTTAGCGA+CGG | + | chr1_1:1315768-1315787 | Msa0000290:CDS | 40.0% | |
| TGAGAGATGGAGGAACAAAT+GGG | - | chr1_1:1315818-1315837 | None:intergenic | 40.0% | |
| TTGAGAGATGGAGGAACAAA+TGG | - | chr1_1:1315819-1315838 | None:intergenic | 40.0% | |
| TGGATGAAAGTCCAGTGTTT+GGG | - | chr1_1:1315845-1315864 | None:intergenic | 40.0% | |
| TTGGATGAAAGTCCAGTGTT+TGG | - | chr1_1:1315846-1315865 | None:intergenic | 40.0% | |
| GTGTGGGATTACTATGTCTT+TGG | - | chr1_1:1315865-1315884 | None:intergenic | 40.0% | |
| ATGAAATTGTGGGGTTGTGT+GGG | - | chr1_1:1315881-1315900 | None:intergenic | 40.0% | |
| !! | GTGGGTTTGTGATTTTTGGA+AGG | - | chr1_1:1315914-1315933 | None:intergenic | 40.0% |
| !! | GAAGGTGGGTTTGTGATTTT+TGG | - | chr1_1:1315918-1315937 | None:intergenic | 40.0% |
| ATGGTACAACCTTGAGAATG+CGG | - | chr1_1:1315991-1316010 | None:intergenic | 40.0% | |
| CAACATTCATGGTAACATGC+AGG | - | chr1_1:1316095-1316114 | None:intergenic | 40.0% | |
| CTGCATGTTACCATGAATGT+TGG | + | chr1_1:1316093-1316112 | Msa0000290:CDS | 40.0% | |
| CATAACGTTGCAATTCAAGC+TGG | + | chr1_1:1316242-1316261 | Msa0000290:CDS | 40.0% | |
| ACACCAAATGCCAAACCTTA+TGG | - | chr1_1:1316385-1316404 | None:intergenic | 40.0% | |
| ! | CAACCAAGTTTTTCCAAGCT+AGG | - | chr1_1:1316467-1316486 | None:intergenic | 40.0% |
| AGTTAAGGGATAGAGGAGTT+TGG | + | chr1_1:1316522-1316541 | Msa0000290:CDS | 40.0% | |
| GGATAGAGGAGTTTGGTATT+GGG | + | chr1_1:1316529-1316548 | Msa0000290:CDS | 40.0% | |
| TGGGAATGTGTGAAGAATAG+TGG | + | chr1_1:1316548-1316567 | Msa0000290:CDS | 40.0% | |
| GGGAATGTGTGAAGAATAGT+GGG | + | chr1_1:1316549-1316568 | Msa0000290:CDS | 40.0% | |
| ! | AATGTGTGAAGAATAGTGGG+TGG | + | chr1_1:1316552-1316571 | Msa0000290:CDS | 40.0% |
| !! | TGAAGAATAGTGGGTGGAAT+GGG | + | chr1_1:1316558-1316577 | Msa0000290:CDS | 40.0% |
| CTTAAACCAGAATCTGAGAG+TGG | + | chr1_1:1316629-1316648 | Msa0000290:CDS | 40.0% | |
| GGACAAAACTAACCAATCGT+TGG | - | chr1_1:1316667-1316686 | None:intergenic | 40.0% | |
| TTCGTTCGTATCTTTAGCGA+CGG | + | chr1_1:1315768-1315787 | Msa0000290:CDS | 40.0% | |
| TGAGAGATGGAGGAACAAAT+GGG | - | chr1_1:1315818-1315837 | None:intergenic | 40.0% | |
| TTGAGAGATGGAGGAACAAA+TGG | - | chr1_1:1315819-1315838 | None:intergenic | 40.0% | |
| TGGATGAAAGTCCAGTGTTT+GGG | - | chr1_1:1315845-1315864 | None:intergenic | 40.0% | |
| TTGGATGAAAGTCCAGTGTT+TGG | - | chr1_1:1315846-1315865 | None:intergenic | 40.0% | |
| GTGTGGGATTACTATGTCTT+TGG | - | chr1_1:1315865-1315884 | None:intergenic | 40.0% | |
| ATGAAATTGTGGGGTTGTGT+GGG | - | chr1_1:1315881-1315900 | None:intergenic | 40.0% | |
| !! | GTGGGTTTGTGATTTTTGGA+AGG | - | chr1_1:1315914-1315933 | None:intergenic | 40.0% |
| !! | GAAGGTGGGTTTGTGATTTT+TGG | - | chr1_1:1315918-1315937 | None:intergenic | 40.0% |
| ATGGTACAACCTTGAGAATG+CGG | - | chr1_1:1315991-1316010 | None:intergenic | 40.0% | |
| CAACATTCATGGTAACATGC+AGG | - | chr1_1:1316095-1316114 | None:intergenic | 40.0% | |
| CTGCATGTTACCATGAATGT+TGG | + | chr1_1:1316093-1316112 | Msa0000290:CDS | 40.0% | |
| CATAACGTTGCAATTCAAGC+TGG | + | chr1_1:1316242-1316261 | Msa0000290:CDS | 40.0% | |
| ACACCAAATGCCAAACCTTA+TGG | - | chr1_1:1316385-1316404 | None:intergenic | 40.0% | |
| ! | CAACCAAGTTTTTCCAAGCT+AGG | - | chr1_1:1316467-1316486 | None:intergenic | 40.0% |
| AGTTAAGGGATAGAGGAGTT+TGG | + | chr1_1:1316522-1316541 | Msa0000290:CDS | 40.0% | |
| GGATAGAGGAGTTTGGTATT+GGG | + | chr1_1:1316529-1316548 | Msa0000290:CDS | 40.0% | |
| TGGGAATGTGTGAAGAATAG+TGG | + | chr1_1:1316548-1316567 | Msa0000290:CDS | 40.0% | |
| GGGAATGTGTGAAGAATAGT+GGG | + | chr1_1:1316549-1316568 | Msa0000290:CDS | 40.0% | |
| ! | AATGTGTGAAGAATAGTGGG+TGG | + | chr1_1:1316552-1316571 | Msa0000290:CDS | 40.0% |
| !! | TGAAGAATAGTGGGTGGAAT+GGG | + | chr1_1:1316558-1316577 | Msa0000290:CDS | 40.0% |
| CTTAAACCAGAATCTGAGAG+TGG | + | chr1_1:1316629-1316648 | Msa0000290:CDS | 40.0% | |
| GGACAAAACTAACCAATCGT+TGG | - | chr1_1:1316667-1316686 | None:intergenic | 40.0% | |
| !!! | TTTAGCGACGGTTTTTGGTG+TGG | - | chr1_1:1315724-1315743 | None:intergenic | 45.0% |
| GGAACAAATGGGGTTTGTGA+TGG | - | chr1_1:1315807-1315826 | None:intergenic | 45.0% | |
| GAGAGATGGAGGAACAAATG+GGG | - | chr1_1:1315817-1315836 | None:intergenic | 45.0% | |
| TTTGGGTCATTGAGAGATGG+AGG | - | chr1_1:1315828-1315847 | None:intergenic | 45.0% | |
| GTGTTTGGGTCATTGAGAGA+TGG | - | chr1_1:1315831-1315850 | None:intergenic | 45.0% | |
| TCTCTCAATGACCCAAACAC+TGG | + | chr1_1:1315831-1315850 | Msa0000290:CDS | 45.0% | |
| GATGAAATTGTGGGGTTGTG+TGG | - | chr1_1:1315882-1315901 | None:intergenic | 45.0% | |
| TCTTCGAATCCGCATTCTCA+AGG | + | chr1_1:1315979-1315998 | Msa0000290:CDS | 45.0% | |
| AATGTTGGGCTGCACTCAAA+TGG | + | chr1_1:1316108-1316127 | Msa0000290:CDS | 45.0% | |
| ATGTTGGGCTGCACTCAAAT+GGG | + | chr1_1:1316109-1316128 | Msa0000290:CDS | 45.0% | |
| !! | CCATGGTTCTGGATTGTTGA+TGG | - | chr1_1:1316156-1316175 | None:intergenic | 45.0% |
| CCATCAACAATCCAGAACCA+TGG | + | chr1_1:1316153-1316172 | Msa0000290:CDS | 45.0% | |
| TGTTCAGTCAACCATGGTTC+TGG | - | chr1_1:1316167-1316186 | None:intergenic | 45.0% | |
| GAACCATGGTTGACTGAACA+TGG | + | chr1_1:1316167-1316186 | Msa0000290:CDS | 45.0% | |
| TCACCATGTTCAGTCAACCA+TGG | - | chr1_1:1316173-1316192 | None:intergenic | 45.0% | |
| !! | TTCATTGGTGGTGATAGTGC+TGG | + | chr1_1:1316206-1316225 | Msa0000290:CDS | 45.0% |
| ! | GTGTACCCAAATGCACCTTT+TGG | + | chr1_1:1316401-1316420 | Msa0000290:CDS | 45.0% |
| GCACCTAGCTTGGAAAAACT+TGG | + | chr1_1:1316461-1316480 | Msa0000290:CDS | 45.0% | |
| GGGATAGAGGAGTTTGGTAT+TGG | + | chr1_1:1316528-1316547 | Msa0000290:CDS | 45.0% | |
| !! | GTGAAGAATAGTGGGTGGAA+TGG | + | chr1_1:1316557-1316576 | Msa0000290:CDS | 45.0% |
| ! | TAGTGGGTGGAATGGGAAAT+TGG | + | chr1_1:1316565-1316584 | Msa0000290:CDS | 45.0% |
| ATCTTGCCACTCTCAGATTC+TGG | - | chr1_1:1316638-1316657 | None:intergenic | 45.0% | |
| !!! | TTTAGCGACGGTTTTTGGTG+TGG | - | chr1_1:1315724-1315743 | None:intergenic | 45.0% |
| GGAACAAATGGGGTTTGTGA+TGG | - | chr1_1:1315807-1315826 | None:intergenic | 45.0% | |
| GAGAGATGGAGGAACAAATG+GGG | - | chr1_1:1315817-1315836 | None:intergenic | 45.0% | |
| TTTGGGTCATTGAGAGATGG+AGG | - | chr1_1:1315828-1315847 | None:intergenic | 45.0% | |
| GTGTTTGGGTCATTGAGAGA+TGG | - | chr1_1:1315831-1315850 | None:intergenic | 45.0% | |
| TCTCTCAATGACCCAAACAC+TGG | + | chr1_1:1315831-1315850 | Msa0000290:CDS | 45.0% | |
| GATGAAATTGTGGGGTTGTG+TGG | - | chr1_1:1315882-1315901 | None:intergenic | 45.0% | |
| TCTTCGAATCCGCATTCTCA+AGG | + | chr1_1:1315979-1315998 | Msa0000290:CDS | 45.0% | |
| AATGTTGGGCTGCACTCAAA+TGG | + | chr1_1:1316108-1316127 | Msa0000290:CDS | 45.0% | |
| ATGTTGGGCTGCACTCAAAT+GGG | + | chr1_1:1316109-1316128 | Msa0000290:CDS | 45.0% | |
| !! | CCATGGTTCTGGATTGTTGA+TGG | - | chr1_1:1316156-1316175 | None:intergenic | 45.0% |
| CCATCAACAATCCAGAACCA+TGG | + | chr1_1:1316153-1316172 | Msa0000290:CDS | 45.0% | |
| TGTTCAGTCAACCATGGTTC+TGG | - | chr1_1:1316167-1316186 | None:intergenic | 45.0% | |
| GAACCATGGTTGACTGAACA+TGG | + | chr1_1:1316167-1316186 | Msa0000290:CDS | 45.0% | |
| TCACCATGTTCAGTCAACCA+TGG | - | chr1_1:1316173-1316192 | None:intergenic | 45.0% | |
| !! | TTCATTGGTGGTGATAGTGC+TGG | + | chr1_1:1316206-1316225 | Msa0000290:CDS | 45.0% |
| ! | GTGTACCCAAATGCACCTTT+TGG | + | chr1_1:1316401-1316420 | Msa0000290:CDS | 45.0% |
| GCACCTAGCTTGGAAAAACT+TGG | + | chr1_1:1316461-1316480 | Msa0000290:CDS | 45.0% | |
| GGGATAGAGGAGTTTGGTAT+TGG | + | chr1_1:1316528-1316547 | Msa0000290:CDS | 45.0% | |
| !! | GTGAAGAATAGTGGGTGGAA+TGG | + | chr1_1:1316557-1316576 | Msa0000290:CDS | 45.0% |
| ! | TAGTGGGTGGAATGGGAAAT+TGG | + | chr1_1:1316565-1316584 | Msa0000290:CDS | 45.0% |
| ATCTTGCCACTCTCAGATTC+TGG | - | chr1_1:1316638-1316657 | None:intergenic | 45.0% | |
| !!! | TTTTGGTGTGGTTGGTGCTG+TGG | - | chr1_1:1315712-1315731 | None:intergenic | 50.0% |
| TCATGGTAACATGCAGGGAG+AGG | - | chr1_1:1316089-1316108 | None:intergenic | 50.0% | |
| TGAGTGCAGCCCAACATTCA+TGG | - | chr1_1:1316106-1316125 | None:intergenic | 50.0% | |
| !!! | TTTTGGTGTGGTTGGTGCTG+TGG | - | chr1_1:1315712-1315731 | None:intergenic | 50.0% |
| TCATGGTAACATGCAGGGAG+AGG | - | chr1_1:1316089-1316108 | None:intergenic | 50.0% | |
| TGAGTGCAGCCCAACATTCA+TGG | - | chr1_1:1316106-1316125 | None:intergenic | 50.0% | |
| !!! | GCGACGGTTTTTGGTGTGGT+TGG | - | chr1_1:1315720-1315739 | None:intergenic | 55.0% |
| GGAGAGGATACTCAGGAGCA+AGG | - | chr1_1:1316073-1316092 | None:intergenic | 55.0% | |
| CATGCAGGGAGAGGATACTC+AGG | - | chr1_1:1316080-1316099 | None:intergenic | 55.0% | |
| CTAGGTGCACCTTCTCCCAA+AGG | - | chr1_1:1316449-1316468 | None:intergenic | 55.0% | |
| !!! | GCGACGGTTTTTGGTGTGGT+TGG | - | chr1_1:1315720-1315739 | None:intergenic | 55.0% |
| GGAGAGGATACTCAGGAGCA+AGG | - | chr1_1:1316073-1316092 | None:intergenic | 55.0% | |
| CATGCAGGGAGAGGATACTC+AGG | - | chr1_1:1316080-1316099 | None:intergenic | 55.0% | |
| CTAGGTGCACCTTCTCCCAA+AGG | - | chr1_1:1316449-1316468 | None:intergenic | 55.0% | |
| ! | GGGAGAAGGTGCACCTAGCT+TGG | + | chr1_1:1316451-1316470 | Msa0000290:CDS | 60.0% |
| ! | GGGAGAAGGTGCACCTAGCT+TGG | + | chr1_1:1316451-1316470 | Msa0000290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1315702 | 1316694 | 1315702 | ID=Msa0000290;Name=Msa0000290 |
| chr1_1 | mRNA | 1315702 | 1316694 | 1315702 | ID=Msa0000290-mRNA-1;Parent=Msa0000290;Name=Msa0000290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|330 |
| chr1_1 | exon | 1315702 | 1316694 | 1315702 | ID=Msa0000290-mRNA-1:exon:146;Parent=Msa0000290-mRNA-1 |
| chr1_1 | CDS | 1315702 | 1316694 | 1315702 | ID=Msa0000290-mRNA-1:cds;Parent=Msa0000290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
