Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035400 | sp|G4LTX4|DSP4_CASSA | 63.918 | 388 | 98 | 6 | 1 | 360 | 1 | 374 | 9.93e-170 | 480 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000290 | Msa0035400 | 0.821319 | 4.302173e-53 | -8.615850e-47 |
| Msa0014410 | Msa0035400 | 0.829624 | 4.639232e-55 | -8.615850e-47 |
| Msa0018470 | Msa0035400 | 0.804757 | 1.853496e-49 | -8.615850e-47 |
| Msa0035290 | Msa0035400 | 0.925720 | 1.251613e-90 | -8.615850e-47 |
| Msa0035400 | Msa0064550 | 0.831803 | 1.357283e-55 | -8.615850e-47 |
| Msa0035400 | Msa0067150 | 0.813759 | 2.175597e-51 | -8.615850e-47 |
| Msa0035400 | Msa0109490 | 0.832997 | 6.866437e-56 | -8.615850e-47 |
| Msa0035400 | Msa0129360 | 0.898512 | 4.935988e-77 | -8.615850e-47 |
| Msa0035400 | Msa0154200 | 0.801059 | 1.076406e-48 | -8.615850e-47 |
| Msa0035400 | Msa0154270 | 0.820454 | 6.800576e-53 | -8.615850e-47 |
| Msa0035400 | Msa0155610 | 0.816783 | 4.627730e-52 | -8.615850e-47 |
| Msa0035400 | Msa0158610 | 0.817341 | 3.468514e-52 | -8.615850e-47 |
| Msa0035400 | Msa0176040 | 0.886658 | 2.824519e-72 | -8.615850e-47 |
| Msa0035400 | Msa0198440 | 0.827296 | 1.692270e-54 | -8.615850e-47 |
| Msa0035400 | Msa0225880 | 0.846840 | 1.686766e-59 | -8.615850e-47 |
| Msa0035400 | Msa0240780 | 0.824194 | 9.212858e-54 | -8.615850e-47 |
| Msa0035400 | Msa0260470 | 0.839429 | 1.592788e-57 | -8.615850e-47 |
| Msa0035400 | Msa0265580 | 0.800064 | 1.717469e-48 | -8.615850e-47 |
| Msa0035400 | Msa0278670 | 0.825857 | 3.728244e-54 | -8.615850e-47 |
| Msa0035400 | Msa0304110 | 0.846408 | 2.213319e-59 | -8.615850e-47 |
| Msa0035400 | Msa0318070 | 0.831700 | 1.438699e-55 | -8.615850e-47 |
| Msa0035400 | Msa0341190 | 0.849492 | 3.122677e-60 | -8.615850e-47 |
| Msa0035400 | Msa0358290 | 0.823215 | 1.561354e-53 | -8.615850e-47 |
| Msa0035400 | Msa0364780 | 0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0035400 | Msa0377280 | 0.851548 | 8.262149e-61 | -8.615850e-47 |
| Msa0035400 | Msa0404690 | 0.852092 | 5.791357e-61 | -8.615850e-47 |
| Msa0035400 | Msa0412190 | 0.846237 | 2.464485e-59 | -8.615850e-47 |
| Msa0035400 | Msa0418430 | 0.854323 | 1.328616e-61 | -8.615850e-47 |
| Msa0035400 | Msa0435010 | 0.815972 | 7.029143e-52 | -8.615850e-47 |
| Msa0035400 | Msa0456760 | 0.823905 | 1.076674e-53 | -8.615850e-47 |
| Msa0035400 | Msa0462590 | 0.856309 | 3.511185e-62 | -8.615850e-47 |
| Msa0035400 | Msa0465800 | 0.844933 | 5.560759e-59 | -8.615850e-47 |
| Msa0035400 | Msa0472740 | 0.843773 | 1.139951e-58 | -8.615850e-47 |
| Msa0035400 | Msa0479100 | 0.808573 | 2.898792e-50 | -8.615850e-47 |
| Msa0035400 | Msa0530950 | 0.817260 | 3.616693e-52 | -8.615850e-47 |
| Msa0035400 | Msa0543900 | 0.808572 | 2.900325e-50 | -8.615850e-47 |
| Msa0035400 | Msa0575850 | 0.810775 | 9.744923e-51 | -8.615850e-47 |
| Msa0035400 | Msa0593810 | 0.810301 | 1.234104e-50 | -8.615850e-47 |
| Msa0035400 | Msa0640380 | 0.809584 | 1.760120e-50 | -8.615850e-47 |
| Msa0035400 | Msa0709660 | 0.813587 | 2.374145e-51 | -8.615850e-47 |
| Msa0035400 | Msa0714340 | 0.822799 | 1.951928e-53 | -8.615850e-47 |
| Msa0035400 | Msa0714380 | 0.830847 | 2.331420e-55 | -8.615850e-47 |
| Msa0035400 | Msa0714600 | 0.807595 | 4.680640e-50 | -8.615850e-47 |
| Msa0035400 | Msa0740210 | 0.807560 | 4.762369e-50 | -8.615850e-47 |
| Msa0035400 | Msa0746980 | 0.899964 | 1.175844e-77 | -8.615850e-47 |
| Msa0035400 | Msa0781390 | 0.800037 | 1.739242e-48 | -8.615850e-47 |
| Msa0035400 | Msa0801360 | 0.847472 | 1.131865e-59 | -8.615850e-47 |
| Msa0035400 | Msa0818440 | 0.876083 | 1.850369e-68 | -8.615850e-47 |
| Msa0035400 | Msa0818550 | 0.862648 | 4.368024e-64 | -8.615850e-47 |
| Msa0035400 | Msa0828570 | 0.851650 | 7.730480e-61 | -8.615850e-47 |
| Msa0035400 | Msa0839830 | 0.844066 | 9.512697e-59 | -8.615850e-47 |
| Msa0035400 | Msa0858910 | 0.847965 | 8.282329e-60 | -8.615850e-47 |
| Msa0035400 | Msa0860920 | 0.825008 | 5.924079e-54 | -8.615850e-47 |
| Msa0035400 | Msa0899700 | 0.804699 | 1.905771e-49 | -8.615850e-47 |
| Msa0035400 | Msa0929750 | 0.800103 | 1.686364e-48 | -8.615850e-47 |
| Msa0035400 | Msa0936030 | 0.800144 | 1.654156e-48 | -8.615850e-47 |
| Msa0035400 | Msa0938420 | 0.816332 | 5.841522e-52 | -8.615850e-47 |
| Msa0035400 | Msa1041080 | 0.804748 | 1.861596e-49 | -8.615850e-47 |
| Msa0035400 | Msa1071640 | 0.821976 | 3.032204e-53 | -8.615850e-47 |
| Msa0035400 | Msa1111630 | 0.807707 | 4.431029e-50 | -8.615850e-47 |
| Msa0035400 | Msa1137940 | 0.821734 | 3.448753e-53 | -8.615850e-47 |
| Msa0035400 | Msa1149750 | 0.800170 | 1.634273e-48 | -8.615850e-47 |
| Msa0035400 | Msa1161210 | 0.813139 | 2.976738e-51 | -8.615850e-47 |
| Msa0035400 | Msa1180050 | 0.858721 | 6.783738e-63 | -8.615850e-47 |
| Msa0035400 | Msa1198720 | 0.820613 | 6.252940e-53 | -8.615850e-47 |
| Msa0035400 | Msa1212760 | 0.833812 | 4.300680e-56 | -8.615850e-47 |
| Msa0035400 | Msa1212980 | 0.800395 | 1.470591e-48 | -8.615850e-47 |
| Msa0035400 | Msa1232270 | 0.869912 | 2.168461e-66 | -8.615850e-47 |
| Msa0035400 | Msa1241820 | 0.844232 | 8.589727e-59 | -8.615850e-47 |
| Msa0035400 | Msa1252300 | 0.826166 | 3.149033e-54 | -8.615850e-47 |
| Msa0035400 | Msa1270770 | 0.857629 | 1.433219e-62 | -8.615850e-47 |
| Msa0035400 | Msa1282920 | 0.804122 | 2.513191e-49 | -8.615850e-47 |
| Msa0035400 | Msa1313050 | 0.873195 | 1.774110e-67 | -8.615850e-47 |
| Msa0035400 | Msa1378470 | 0.818346 | 2.055977e-52 | -8.615850e-47 |
| Msa0035400 | Msa1421870 | 0.842603 | 2.338373e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035400 | MtrunA17_Chr1g0197631 | 88.402 | 388 | 15 | 3 | 1 | 361 | 1 | 385 | 0.0 | 676 |
| Msa0035400 | MtrunA17_Chr3g0129011 | 42.781 | 187 | 75 | 3 | 71 | 230 | 66 | 247 | 5.08e-35 | 129 |
| Msa0035400 | MtrunA17_Chr7g0228091 | 30.182 | 275 | 147 | 10 | 97 | 333 | 328 | 595 | 9.01e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0035400 | AT3G52180.1 | 55.643 | 381 | 133 | 3 | 1 | 354 | 1 | 372 | 1.17e-139 | 402 |
| Msa0035400 | AT3G52180.4 | 61.511 | 278 | 80 | 1 | 105 | 355 | 1 | 278 | 1.38e-123 | 357 |
| Msa0035400 | AT3G52180.3 | 57.439 | 289 | 87 | 3 | 1 | 262 | 1 | 280 | 6.94e-100 | 297 |
| Msa0035400 | AT3G52180.2 | 57.439 | 289 | 87 | 3 | 1 | 262 | 1 | 280 | 1.20e-99 | 297 |
| Msa0035400 | AT3G10940.1 | 38.462 | 195 | 91 | 3 | 63 | 230 | 51 | 243 | 8.17e-34 | 127 |
| Msa0035400 | AT3G01510.3 | 30.337 | 267 | 140 | 8 | 97 | 324 | 140 | 399 | 8.10e-28 | 113 |
| Msa0035400 | AT3G01510.2 | 30.337 | 267 | 140 | 8 | 97 | 324 | 140 | 399 | 8.10e-28 | 113 |
| Msa0035400 | AT3G01510.1 | 30.337 | 267 | 140 | 8 | 97 | 324 | 282 | 541 | 1.64e-27 | 114 |
| Msa0035400 | AT3G52526.3 | 52.326 | 86 | 27 | 2 | 96 | 179 | 21 | 94 | 9.90e-20 | 83.6 |
Find 111 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTGTCATCGAAATTTA+AGG | 0.130911 | 1_1:+63579484 | None:intergenic |
| TGCTCTACGGTGGAAATTTC+AGG | 0.182783 | 1_1:-63579909 | Msa0035400:CDS |
| TTCAGTTGGCATATATGTTT+TGG | 0.189491 | 1_1:-63581023 | Msa0035400:intron |
| CTTTGGTCCTTAAAGCTTAC+AGG | 0.191748 | 1_1:-63579975 | Msa0035400:intron |
| AAACAGAATAATAGAGTTTC+TGG | 0.199837 | 1_1:-63578348 | Msa0035400:CDS |
| TTTATTTGTGCATGGTTTAT+TGG | 0.219530 | 1_1:+63578107 | None:intergenic |
| GTTACAGTTAGTGTAAATTT+AGG | 0.222616 | 1_1:-63578198 | Msa0035400:three_prime_UTR |
| TTTCTTGTGCAGGCTGCTTC+TGG | 0.237212 | 1_1:-63583396 | Msa0035400:intron |
| TTGACTTATAGGCATGAATT+AGG | 0.265240 | 1_1:-63582788 | Msa0035400:CDS |
| GAAATTTCAGGACTTGATAT+TGG | 0.272062 | 1_1:-63579897 | Msa0035400:CDS |
| CGCAGTTTATCAACGTCTTC+AGG | 0.287983 | 1_1:+63582614 | None:intergenic |
| TATAAGGCAATTAATTCTAA+TGG | 0.309780 | 1_1:-63581898 | Msa0035400:CDS |
| GTAACTGTGTTGTGTGGGGC+TGG | 0.310435 | 1_1:+63584788 | None:intergenic |
| CTTAAATTTCGATGACAAAC+AGG | 0.311977 | 1_1:-63579483 | Msa0035400:CDS |
| TGTAATTAGCAAATTATATA+AGG | 0.327149 | 1_1:-63581914 | Msa0035400:CDS |
| ATCCTTCCGGACTTGATTGT+TGG | 0.328796 | 1_1:-63582749 | Msa0035400:CDS |
| TCTGTTCTTGTTGCTGCTGA+TGG | 0.347943 | 1_1:+63584723 | None:intergenic |
| TGATCTACGAAAGCGGCTTC+CGG | 0.349920 | 1_1:-63581938 | Msa0035400:CDS |
| GTGGGGCTGGGATGGTTTGA+AGG | 0.349991 | 1_1:+63584801 | None:intergenic |
| CGTTCATCCTTCGTGAGATC+AGG | 0.360339 | 1_1:+63578371 | None:intergenic |
| TTCTTCTTCTTCTTTATCCC+TGG | 0.361202 | 1_1:-63584504 | Msa0035400:intron |
| TGAGGCTAATACACTACTTC+TGG | 0.368444 | 1_1:-63580980 | Msa0035400:intron |
| ATTGACATGGCCATCTTCAT+TGG | 0.378474 | 1_1:+63578734 | None:intergenic |
| GTTGATAAACTGCGTAAAAT+CGG | 0.380846 | 1_1:-63582605 | Msa0035400:CDS |
| TCAACAAGCAAGTGCATTGA+TGG | 0.383583 | 1_1:+63578298 | None:intergenic |
| TCGATGACAAACAGGGTTCA+TGG | 0.384520 | 1_1:-63579475 | Msa0035400:CDS |
| CAGTGGCCGTGCCTCCCTTC+GGG | 0.392669 | 1_1:-63578414 | Msa0035400:CDS |
| AATAAATAGACTCACAATAT+CGG | 0.395842 | 1_1:+63580413 | None:intergenic |
| ACACTTTAAATGTGGAGAAT+TGG | 0.404960 | 1_1:-63578042 | Msa0035400:three_prime_UTR |
| CACTCCAACCATGCTACTTA+AGG | 0.416860 | 1_1:-63584350 | Msa0035400:intron |
| TGTGTTGTGTGGGGCTGGGA+TGG | 0.425731 | 1_1:+63584793 | None:intergenic |
| GATGGTTCAGAGATCCTCAT+TGG | 0.427242 | 1_1:+63578316 | None:intergenic |
| ACAGTGGCCGTGCCTCCCTT+CGG | 0.430443 | 1_1:-63578415 | Msa0035400:CDS |
| TGTTTGTCATCGAAATTTAA+GGG | 0.437209 | 1_1:+63579485 | None:intergenic |
| ACATATATACATTGCACTGC+TGG | 0.440089 | 1_1:-63581868 | Msa0035400:CDS |
| TTGACATGGCCATCTTCATT+GGG | 0.449452 | 1_1:+63578735 | None:intergenic |
| TAACTGTGTTGTGTGGGGCT+GGG | 0.457708 | 1_1:+63584789 | None:intergenic |
| TTTCAGGACTTGATATTGGA+TGG | 0.457996 | 1_1:-63579893 | Msa0035400:CDS |
| GAGTACAAGTACATTGTTGA+TGG | 0.462857 | 1_1:-63578795 | Msa0035400:CDS |
| GAACTACAACTTCATCCTTC+CGG | 0.473825 | 1_1:-63582762 | Msa0035400:CDS |
| AAGGTCATGCTGTCCAAAGC+TGG | 0.475543 | 1_1:-63580457 | Msa0035400:CDS |
| AAGATATTGTGGTGGCGAGC+AGG | 0.477727 | 1_1:+63584539 | None:intergenic |
| TTCAGAATCTGAATCTTCCC+AGG | 0.477999 | 1_1:-63584681 | Msa0035400:intron |
| CCTGTGTAACTGTGTTGTGT+GGG | 0.480836 | 1_1:+63584783 | None:intergenic |
| TCCCTTCGGGAGAGAGTGAC+TGG | 0.483806 | 1_1:-63578401 | Msa0035400:CDS |
| AAGTGACAGGCTTCTTACTA+AGG | 0.492229 | 1_1:+63579952 | None:intergenic |
| ACATTGATTTGCAGATGTCT+AGG | 0.493553 | 1_1:+63578002 | None:intergenic |
| ATACATTGCACTGCTGGACT+TGG | 0.499456 | 1_1:-63581862 | Msa0035400:CDS |
| AAGAGACATACCGCAACAGC+TGG | 0.503978 | 1_1:+63581832 | None:intergenic |
| AGTACATTGTTGATGGAGAA+TGG | 0.504240 | 1_1:-63578788 | Msa0035400:CDS |
| TTCAGGACTTGATATTGGAT+GGG | 0.505174 | 1_1:-63579892 | Msa0035400:CDS |
| GGGTTCATGGTTTCTCAAGA+AGG | 0.505456 | 1_1:-63579462 | Msa0035400:CDS |
| TCAGGACTTGATATTGGATG+GGG | 0.510634 | 1_1:-63579891 | Msa0035400:CDS |
| TGTGGAGAATTGGAGAATCA+TGG | 0.514741 | 1_1:-63578032 | Msa0035400:three_prime_UTR |
| TGTGCATATTTATTTGTGCA+TGG | 0.515182 | 1_1:+63578099 | None:intergenic |
| GATTGTTGGATCATGCCTGC+AGG | 0.516289 | 1_1:-63582735 | Msa0035400:intron |
| ATGACAGAAGCCATGGGTGC+TGG | 0.521445 | 1_1:-63583300 | Msa0035400:intron |
| ATGGTTCAGAGATCCTCATT+GGG | 0.525064 | 1_1:+63578317 | None:intergenic |
| CTGTAACAGAGAGCTTAGTA+AGG | 0.526236 | 1_1:+63578214 | None:intergenic |
| GTTACCTTAAGTAGCATGGT+TGG | 0.527020 | 1_1:+63584346 | None:intergenic |
| TTGTGGTGGCGAGCAGGAAG+AGG | 0.530076 | 1_1:+63584545 | None:intergenic |
| ACCTGTGTAACTGTGTTGTG+TGG | 0.531116 | 1_1:+63584782 | None:intergenic |
| TGTCCCCACGACAAAGTGAC+AGG | 0.532631 | 1_1:+63579939 | None:intergenic |
| TATAATTTGCTAATTACAGC+CGG | 0.535250 | 1_1:+63581919 | None:intergenic |
| TGAAGTTACCTTAAGTAGCA+TGG | 0.535870 | 1_1:+63584342 | None:intergenic |
| ATGAAGGAAGAAAGATATTG+TGG | 0.535955 | 1_1:+63584528 | None:intergenic |
| GAGGAGGAGCAGATAGTGTG+TGG | 0.537058 | 1_1:+63584564 | None:intergenic |
| CATGATCCAACAATCAAGTC+CGG | 0.539623 | 1_1:+63582743 | None:intergenic |
| TAGCTCTGATGTCGAGGAGG+AGG | 0.541130 | 1_1:-63583349 | Msa0035400:CDS |
| GTTAGTGTAAATTTAGGATG+CGG | 0.542044 | 1_1:-63578192 | Msa0035400:three_prime_UTR |
| CTTCGATAAAATTATTGACA+TGG | 0.542422 | 1_1:+63578721 | None:intergenic |
| GTAACCTCTCCCAATGAAGA+TGG | 0.545446 | 1_1:-63578744 | Msa0035400:CDS |
| ATGGCCATCTTCATTGGGAG+AGG | 0.549721 | 1_1:+63578740 | None:intergenic |
| GGGACACCGCAATTGCTCTA+CGG | 0.552218 | 1_1:-63579922 | Msa0035400:CDS |
| CTCTCTCCCGAAGGGAGGCA+CGG | 0.552342 | 1_1:+63578408 | None:intergenic |
| TCTGGAAGCTCTTCCCAATG+AGG | 0.552898 | 1_1:-63578330 | Msa0035400:CDS |
| GACAAGTAGCTCTGATGTCG+AGG | 0.561197 | 1_1:-63583355 | Msa0035400:CDS |
| TAATAACATGACAGAAGCCA+TGG | 0.567902 | 1_1:-63583307 | Msa0035400:CDS |
| TGGAAGAGCTCCAGCTGTTG+CGG | 0.568883 | 1_1:-63581842 | Msa0035400:intron |
| CACCAGTCACTCTCTCCCGA+AGG | 0.571656 | 1_1:+63578399 | None:intergenic |
| TGGTGGCGAGCAGGAAGAGG+AGG | 0.575579 | 1_1:+63584548 | None:intergenic |
| GAGCTACTTGTCTCTGCACT+CGG | 0.576263 | 1_1:+63583366 | None:intergenic |
| GGCCACTGTCCGCATCATCA+AGG | 0.584686 | 1_1:+63578429 | None:intergenic |
| GAAGCCTGTCACTTTGTCGT+GGG | 0.585071 | 1_1:-63579943 | Msa0035400:CDS |
| ATTAAACATACCAGCACCCA+TGG | 0.588156 | 1_1:+63583290 | None:intergenic |
| ACCAGTCACTCTCTCCCGAA+GGG | 0.593295 | 1_1:+63578400 | None:intergenic |
| AGAAGCCTGTCACTTTGTCG+TGG | 0.601786 | 1_1:-63579944 | Msa0035400:CDS |
| TGAACAGGTCCTTGATGATG+CGG | 0.604730 | 1_1:-63578438 | Msa0035400:intron |
| GTCCTTGATGATGCGGACAG+TGG | 0.606712 | 1_1:-63578431 | Msa0035400:CDS |
| TTTCCACCGTAGAGCAATTG+CGG | 0.609902 | 1_1:+63579916 | None:intergenic |
| CTGTGTAACTGTGTTGTGTG+GGG | 0.611947 | 1_1:+63584784 | None:intergenic |
| AAGGCAATTAATTCTAATGG+AGG | 0.612848 | 1_1:-63581895 | Msa0035400:CDS |
| GTGGAGAATTGGAGAATCAT+GGG | 0.613059 | 1_1:-63578031 | Msa0035400:three_prime_UTR |
| AGATTCGCACACTTTAAATG+TGG | 0.619998 | 1_1:-63578050 | Msa0035400:three_prime_UTR |
| ATCCAACAATCAAGTCCGGA+AGG | 0.629842 | 1_1:+63582747 | None:intergenic |
| TGTGTGGAATTGTAAAACAG+AGG | 0.637298 | 1_1:+63584580 | None:intergenic |
| ATTCATTTGATCTACGAAAG+CGG | 0.641783 | 1_1:-63581945 | Msa0035400:CDS |
| TTAAATTTCGATGACAAACA+GGG | 0.643133 | 1_1:-63579482 | Msa0035400:CDS |
| CCCACACAACACAGTTACAC+AGG | 0.645329 | 1_1:-63584783 | Msa0035400:five_prime_UTR |
| AAGGAAGAAAGATATTGTGG+TGG | 0.657505 | 1_1:+63584531 | None:intergenic |
| AAGTAGCTCTGATGTCGAGG+AGG | 0.659228 | 1_1:-63583352 | Msa0035400:CDS |
| ACACCGCAATTGCTCTACGG+TGG | 0.661178 | 1_1:-63579919 | Msa0035400:CDS |
| AGTCACTCTCTCCCGAAGGG+AGG | 0.664364 | 1_1:+63578403 | None:intergenic |
| GTGGAATTGTAAAACAGAGG+AGG | 0.665928 | 1_1:+63584583 | None:intergenic |
| CAGGACTTGATATTGGATGG+GGG | 0.671888 | 1_1:-63579890 | Msa0035400:CDS |
| AAGCCTGTCACTTTGTCGTG+GGG | 0.672587 | 1_1:-63579942 | Msa0035400:CDS |
| AATAACATGACAGAAGCCAT+GGG | 0.682029 | 1_1:-63583306 | Msa0035400:CDS |
| TCAGGGTTATAAACTCAATG+AGG | 0.689279 | 1_1:-63580998 | Msa0035400:CDS |
| ATGTCTGTATCATAGTGCGG+TGG | 0.699931 | 1_1:-63578075 | Msa0035400:three_prime_UTR |
| TGATGATCCTGATCTCACGA+AGG | 0.730198 | 1_1:-63578378 | Msa0035400:CDS |
| CAAATGTCTGTATCATAGTG+CGG | 0.747227 | 1_1:-63578078 | Msa0035400:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAACAAAATCAATT+TGG | - | chr1_1:63579120-63579139 | Msa0035400:intron | 10.0% |
| !! | GAAAATGATATTAAATAATA+GGG | + | chr1_1:63582190-63582209 | None:intergenic | 10.0% |
| !!! | ATTTGTTTAAAACATTTTAT+AGG | - | chr1_1:63583488-63583507 | Msa0035400:intron | 10.0% |
| !!! | AATAGTAATTTTACATTAAA+CGG | + | chr1_1:63583782-63583801 | None:intergenic | 10.0% |
| !! | GAAGAAAATAAAAAAAGTAA+AGG | + | chr1_1:63578488-63578507 | None:intergenic | 15.0% |
| !! | TTAACATTAAAATAAAGCTT+TGG | + | chr1_1:63579566-63579585 | None:intergenic | 15.0% |
| !! | CATAATAAACAAAATTGTTT+AGG | + | chr1_1:63580270-63580289 | None:intergenic | 15.0% |
| !!! | TTAATACTAGTTAGATATTT+TGG | - | chr1_1:63580354-63580373 | Msa0035400:intron | 15.0% |
| !! | TGTAATTAGCAAATTATATA+AGG | - | chr1_1:63580889-63580908 | Msa0035400:intron | 15.0% |
| !!! | TTTTGTTTATATAGAAAGAT+AGG | - | chr1_1:63581480-63581499 | Msa0035400:intron | 15.0% |
| !! | TTTGTTTATATAGAAAGATA+GGG | - | chr1_1:63581481-63581500 | Msa0035400:intron | 15.0% |
| !! | TTTCAGAAAGAAAAAAAAAA+TGG | + | chr1_1:63581975-63581994 | None:intergenic | 15.0% |
| !! | GGAAAATGATATTAAATAAT+AGG | + | chr1_1:63582191-63582210 | None:intergenic | 15.0% |
| !! | CATTAACTTTCTAAATTAAA+AGG | + | chr1_1:63582987-63583006 | None:intergenic | 15.0% |
| !! | ATCAACATTACAATAAAATA+AGG | - | chr1_1:63583453-63583472 | Msa0035400:intron | 15.0% |
| !! | TCAACATTACAATAAAATAA+GGG | - | chr1_1:63583454-63583473 | Msa0035400:intron | 15.0% |
| !!! | ATTATATCTTAACTTTGAAG+AGG | + | chr1_1:63578586-63578605 | None:intergenic | 20.0% |
| !! | TAATAATATCTTCAATGACA+AGG | - | chr1_1:63578602-63578621 | Msa0035400:intron | 20.0% |
| !! | AAGATAAAGTGATTTATGTT+TGG | - | chr1_1:63578655-63578674 | Msa0035400:intron | 20.0% |
| !!! | AGAATTGATTTTATCATATC+TGG | + | chr1_1:63578901-63578920 | None:intergenic | 20.0% |
| !!! | CATATGTTAGTTTTCAATTT+TGG | + | chr1_1:63578951-63578970 | None:intergenic | 20.0% |
| !!! | ATAATTTAAAACAGGGAATT+CGG | + | chr1_1:63579063-63579082 | None:intergenic | 20.0% |
| !!! | AATCAAACATTCTTGTTTTT+GGG | + | chr1_1:63579339-63579358 | None:intergenic | 20.0% |
| !!! | TAATCAAACATTCTTGTTTT+TGG | + | chr1_1:63579340-63579359 | None:intergenic | 20.0% |
| !! | ATGCAAATATTATAAACACA+AGG | + | chr1_1:63579886-63579905 | None:intergenic | 20.0% |
| !! | ATAAAAATAAAAGAAGTCAG+AGG | + | chr1_1:63580153-63580172 | None:intergenic | 20.0% |
| !! | TTAACATTTCTATTTACTCA+TGG | - | chr1_1:63580733-63580752 | Msa0035400:intron | 20.0% |
| !! | TATAAGGCAATTAATTCTAA+TGG | - | chr1_1:63580905-63580924 | Msa0035400:intron | 20.0% |
| !!! | TATGTTTTTGAGTTAATTCT+TGG | - | chr1_1:63581049-63581068 | Msa0035400:intron | 20.0% |
| !! | TTAATATGTTGTACAAAGAA+AGG | - | chr1_1:63581097-63581116 | Msa0035400:intron | 20.0% |
| !!! | AAAATTTCTTGTGTGTTTTA+AGG | + | chr1_1:63581423-63581442 | None:intergenic | 20.0% |
| !! | GATAAATATCACTTCAAATT+TGG | + | chr1_1:63581720-63581739 | None:intergenic | 20.0% |
| !! | ACTTAGTTATTTGTGAATTA+TGG | - | chr1_1:63582112-63582131 | Msa0035400:intron | 20.0% |
| !!! | ATTTGATGATTAATTCTTCT+TGG | - | chr1_1:63582244-63582263 | Msa0035400:intron | 20.0% |
| !! | AATAAATAGACTCACAATAT+CGG | + | chr1_1:63582393-63582412 | None:intergenic | 20.0% |
| !!! | TATTCGAGTTGATATAAAAA+GGG | + | chr1_1:63582747-63582766 | None:intergenic | 20.0% |
| !!! | ATATTCGAGTTGATATAAAA+AGG | + | chr1_1:63582748-63582767 | None:intergenic | 20.0% |
| !! | TTTATATCAACTCGAATATT+TGG | - | chr1_1:63582749-63582768 | Msa0035400:CDS | 20.0% |
| !! | CATTAACCATTATTTATCTT+TGG | - | chr1_1:63582811-63582830 | Msa0035400:intron | 20.0% |
| !!! | ACATGGAGATATTTTTTAAA+TGG | - | chr1_1:63583014-63583033 | Msa0035400:intron | 20.0% |
| !! | AAACATGATAAATGTTGTAA+TGG | + | chr1_1:63583079-63583098 | None:intergenic | 20.0% |
| !!! | TTACAACATTTATCATGTTT+TGG | - | chr1_1:63583079-63583098 | Msa0035400:intron | 20.0% |
| !!! | CATCTAATAAAGTAGTTTTA+TGG | - | chr1_1:63583687-63583706 | Msa0035400:intron | 20.0% |
| !! | AATGACTCAAAAAAGAATAA+CGG | + | chr1_1:63584292-63584311 | None:intergenic | 20.0% |
| ! | AGAAGAAGAAGAAAAAAGAT+CGG | + | chr1_1:63578389-63578408 | None:intergenic | 25.0% |
| !! | TTTTCTTCTTCTTCTTGTAA+TGG | - | chr1_1:63578394-63578413 | Msa0035400:CDS | 25.0% |
| ! | CAATTTCAATTTCAATTTCG+AGG | - | chr1_1:63578542-63578561 | Msa0035400:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | + | chr1_1:63578802-63578821 | None:intergenic | 25.0% |
| !! | CATTGACAAGAATTGATTTA+AGG | - | chr1_1:63578823-63578842 | Msa0035400:intron | 25.0% |
| !! | GATTTAAGGCTAAAATCAAA+TGG | - | chr1_1:63578837-63578856 | Msa0035400:intron | 25.0% |
| ! | ATCATATCTGGATGATTTAA+AGG | + | chr1_1:63578889-63578908 | None:intergenic | 25.0% |
| !!! | TGTTAGTTTTCAATTTTGGA+GGG | + | chr1_1:63578947-63578966 | None:intergenic | 25.0% |
| !!! | ATGTTAGTTTTCAATTTTGG+AGG | + | chr1_1:63578948-63578967 | None:intergenic | 25.0% |
| ! | ATGCTATTGAGAAATCTAAA+AGG | + | chr1_1:63578982-63579001 | None:intergenic | 25.0% |
| !! | AGCTGAGATAATTTAAAACA+GGG | + | chr1_1:63579070-63579089 | None:intergenic | 25.0% |
| !! | ATTATCTCAGCTGTTAATTT+TGG | - | chr1_1:63579078-63579097 | Msa0035400:intron | 25.0% |
| ! | TCAAATTAGAACTACAAAGT+AGG | + | chr1_1:63579700-63579719 | None:intergenic | 25.0% |
| !!! | AAAAAACTCAGAAGCATTTT+GGG | - | chr1_1:63579731-63579750 | Msa0035400:intron | 25.0% |
| !!! | GTTTCATTTTGTTTCACTTA+TGG | - | chr1_1:63580090-63580109 | Msa0035400:intron | 25.0% |
| ! | ATAATCATTGAAGAGCTTAT+CGG | - | chr1_1:63580504-63580523 | Msa0035400:intron | 25.0% |
| !! | CAAATTAATAGATTTTTGCG+CGG | + | chr1_1:63580561-63580580 | None:intergenic | 25.0% |
| !!! | TATAATTTGCTAATTACAGC+CGG | + | chr1_1:63580887-63580906 | None:intergenic | 25.0% |
| !! | GCTTTTATGGTTGTATTTAA+GGG | - | chr1_1:63581391-63581410 | Msa0035400:intron | 25.0% |
| !! | AAAACACACAAGAAATTTTC+TGG | - | chr1_1:63581424-63581443 | Msa0035400:intron | 25.0% |
| !!! | ATCTTCATAGTATTTTGGAT+TGG | + | chr1_1:63581604-63581623 | None:intergenic | 25.0% |
| !! | ACTCTATCTTCATAGTATTT+TGG | + | chr1_1:63581609-63581628 | None:intergenic | 25.0% |
| ! | ATTTATCAGTTTATCTCCAT+TGG | - | chr1_1:63581733-63581752 | Msa0035400:intron | 25.0% |
| !!! | ACATTTTAGTATGTCTATTG+AGG | - | chr1_1:63581879-63581898 | Msa0035400:CDS | 25.0% |
| ! | TAAAGTTTAATTCAGGCAAT+TGG | + | chr1_1:63581943-63581962 | None:intergenic | 25.0% |
| ! | AAGTCACTAAAGTTTAATTC+AGG | + | chr1_1:63581950-63581969 | None:intergenic | 25.0% |
| ! | TTATTTGTGAATTATGGAAC+AGG | - | chr1_1:63582118-63582137 | Msa0035400:intron | 25.0% |
| ! | TTTATGTAGCAAATTTGTCA+AGG | - | chr1_1:63582528-63582547 | Msa0035400:intron | 25.0% |
| ! | TTATGTAGCAAATTTGTCAA+GGG | - | chr1_1:63582529-63582548 | Msa0035400:intron | 25.0% |
| ! | AAAGGAAAACATTTGTTTAC+TGG | + | chr1_1:63582631-63582650 | None:intergenic | 25.0% |
| !! | ACAAATGTTTTCCTTTGAAT+AGG | - | chr1_1:63582635-63582654 | Msa0035400:intron | 25.0% |
| ! | TAAGGACCAAAGATAAATAA+TGG | + | chr1_1:63582820-63582839 | None:intergenic | 25.0% |
| ! | AAATTCCAACAGAAAAACAA+AGG | + | chr1_1:63583122-63583141 | None:intergenic | 25.0% |
| ! | TGTTTGTCATCGAAATTTAA+GGG | + | chr1_1:63583321-63583340 | None:intergenic | 25.0% |
| ! | TTAAATTTCGATGACAAACA+GGG | - | chr1_1:63583321-63583340 | Msa0035400:CDS | 25.0% |
| ! | ATATATTCATGCAATTCATC+TGG | - | chr1_1:63583620-63583639 | Msa0035400:intron | 25.0% |
| ! | TATATTCATGCAATTCATCT+GGG | - | chr1_1:63583621-63583640 | Msa0035400:intron | 25.0% |
| ! | AATGACGCTATTATATCATT+TGG | + | chr1_1:63583753-63583772 | None:intergenic | 25.0% |
| ! | CTTCGATAAAATTATTGACA+TGG | + | chr1_1:63584085-63584104 | None:intergenic | 25.0% |
| ! | AAACAGAATAATAGAGTTTC+TGG | - | chr1_1:63584455-63584474 | Msa0035400:intron | 25.0% |
| ! | GTTACAGTTAGTGTAAATTT+AGG | - | chr1_1:63584605-63584624 | Msa0035400:intron | 25.0% |
| ! | TTTATTTGTGCATGGTTTAT+TGG | + | chr1_1:63584699-63584718 | None:intergenic | 25.0% |
| TCATAGAGAATAACAAACCT+GGG | + | chr1_1:63578142-63578161 | None:intergenic | 30.0% | |
| ATCATAGAGAATAACAAACC+TGG | + | chr1_1:63578143-63578162 | None:intergenic | 30.0% | |
| AAAGAATTACTAAGCAGCAA+TGG | + | chr1_1:63578184-63578203 | None:intergenic | 30.0% | |
| ATGAAGGAAGAAAGATATTG+TGG | + | chr1_1:63578278-63578297 | None:intergenic | 30.0% | |
| AAAGAAGAAGAAGAAGATGA+AGG | + | chr1_1:63578294-63578313 | None:intergenic | 30.0% | |
| !! | TTCTCTAGCAGAATTGATTT+TGG | + | chr1_1:63578776-63578795 | None:intergenic | 30.0% |
| AACCTATGTATGTGTATTGA+AGG | - | chr1_1:63579035-63579054 | Msa0035400:intron | 30.0% | |
| ATCCTTCAATACACATACAT+AGG | + | chr1_1:63579040-63579059 | None:intergenic | 30.0% | |
| ! | CAGCTGAGATAATTTAAAAC+AGG | + | chr1_1:63579071-63579090 | None:intergenic | 30.0% |
| ! | TCTCTGCCATTTATTTAGAT+TGG | - | chr1_1:63579148-63579167 | Msa0035400:intron | 30.0% |
| GACTGTCCAATCTAAATAAA+TGG | + | chr1_1:63579157-63579176 | None:intergenic | 30.0% | |
| ATTGAGTGATGTAATTCTGT+AGG | - | chr1_1:63579187-63579206 | Msa0035400:intron | 30.0% | |
| TTAGCAATCAATGATGTTGA+TGG | - | chr1_1:63579212-63579231 | Msa0035400:intron | 30.0% | |
| !!! | TTTTGAAACGTTGCACATTT+TGG | - | chr1_1:63579236-63579255 | Msa0035400:intron | 30.0% |
| ! | TGGGTTCTAATTTCTCTTAT+GGG | + | chr1_1:63579320-63579339 | None:intergenic | 30.0% |
| ! | TTGGGTTCTAATTTCTCTTA+TGG | + | chr1_1:63579321-63579340 | None:intergenic | 30.0% |
| CACATGAAGTAGAAGTTATT+AGG | + | chr1_1:63579363-63579382 | None:intergenic | 30.0% | |
| !! | AGAATACTGAAGAAAGTGTT+AGG | + | chr1_1:63579633-63579652 | None:intergenic | 30.0% |
| GAGAAAGAGTCTAATTTAAG+AGG | + | chr1_1:63579660-63579679 | None:intergenic | 30.0% | |
| !!! | GCTTCTGAGTTTTTTGTTTT+TGG | + | chr1_1:63579726-63579745 | None:intergenic | 30.0% |
| !!! | CAAAAAACTCAGAAGCATTT+TGG | - | chr1_1:63579730-63579749 | Msa0035400:intron | 30.0% |
| !!! | AAAAACTCAGAAGCATTTTG+GGG | - | chr1_1:63579732-63579751 | Msa0035400:intron | 30.0% |
| TAATATTAGCGAACATGTGA+AGG | + | chr1_1:63579853-63579872 | None:intergenic | 30.0% | |
| ATTTGCATTCGACTCAAATT+TGG | - | chr1_1:63579898-63579917 | Msa0035400:CDS | 30.0% | |
| CTCAAATTTGGACTAACTAA+TGG | - | chr1_1:63579910-63579929 | Msa0035400:CDS | 30.0% | |
| GTTTAGCACATTGTTAGAAA+GGG | + | chr1_1:63579991-63580010 | None:intergenic | 30.0% | |
| TGTTTAGCACATTGTTAGAA+AGG | + | chr1_1:63579992-63580011 | None:intergenic | 30.0% | |
| !!! | GCTAAACAGTTTTGACTTAT+AGG | - | chr1_1:63580004-63580023 | Msa0035400:intron | 30.0% |
| TTGACTTATAGGCATGAATT+AGG | - | chr1_1:63580015-63580034 | Msa0035400:intron | 30.0% | |
| ! | GTTGATAAACTGCGTAAAAT+CGG | - | chr1_1:63580198-63580217 | Msa0035400:intron | 30.0% |
| TAATCATTGAAGAGCTTATC+GGG | - | chr1_1:63580505-63580524 | Msa0035400:intron | 30.0% | |
| ! | ATTTTACTTCTCACAGCTTA+TGG | - | chr1_1:63580598-63580617 | Msa0035400:intron | 30.0% |
| ! | TTTTACTTCTCACAGCTTAT+GGG | - | chr1_1:63580599-63580618 | Msa0035400:intron | 30.0% |
| ! | AAAAAGTGCATGACATACAA+TGG | + | chr1_1:63580806-63580825 | None:intergenic | 30.0% |
| !!! | CACTTTTTCACATTATATCG+TGG | - | chr1_1:63580818-63580837 | Msa0035400:intron | 30.0% |
| ATTCATTTGATCTACGAAAG+CGG | - | chr1_1:63580858-63580877 | Msa0035400:intron | 30.0% | |
| AAGGCAATTAATTCTAATGG+AGG | - | chr1_1:63580908-63580927 | Msa0035400:intron | 30.0% | |
| GTTAATTCTTGGTATACTGA+AGG | - | chr1_1:63581060-63581079 | Msa0035400:intron | 30.0% | |
| ! | ATTACACATTAGGGCTTTTA+TGG | - | chr1_1:63581378-63581397 | Msa0035400:intron | 30.0% |
| ! | GGCTTTTATGGTTGTATTTA+AGG | - | chr1_1:63581390-63581409 | Msa0035400:intron | 30.0% |
| !! | GAGATTTAGAGCTTGTTTTT+GGG | - | chr1_1:63581446-63581465 | Msa0035400:intron | 30.0% |
| TTAGAGAAGTCTAAACACAA+AGG | - | chr1_1:63581547-63581566 | Msa0035400:intron | 30.0% | |
| CAAAACAAACTGTTAGACAA+TGG | + | chr1_1:63581759-63581778 | None:intergenic | 30.0% | |
| !!! | ACAGTTTGTTTTGTTTCAGT+TGG | - | chr1_1:63581766-63581785 | Msa0035400:intron | 30.0% |
| ! | TTCAGTTGGCATATATGTTT+TGG | - | chr1_1:63581780-63581799 | Msa0035400:intron | 30.0% |
| ! | TCAGTTGGCATATATGTTTT+GGG | - | chr1_1:63581781-63581800 | Msa0035400:intron | 30.0% |
| TAGTTGCATCACTATCAAAT+TGG | - | chr1_1:63582064-63582083 | Msa0035400:intron | 30.0% | |
| TCACTATCAAATTGGAAATC+TGG | - | chr1_1:63582072-63582091 | Msa0035400:intron | 30.0% | |
| GAGAAAATCAATCTATCAGT+TGG | + | chr1_1:63582152-63582171 | None:intergenic | 30.0% | |
| AGCTCTATGACATAAAGAAA+GGG | + | chr1_1:63582212-63582231 | None:intergenic | 30.0% | |
| TTTGCTCTGCAAGAATAAAA+AGG | + | chr1_1:63582327-63582346 | None:intergenic | 30.0% | |
| ! | TTTTATTCTTGCAGAGCAAA+AGG | - | chr1_1:63582327-63582346 | Msa0035400:intron | 30.0% |
| ! | AACATCTGGACATCTTTTTA+TGG | + | chr1_1:63582465-63582484 | None:intergenic | 30.0% |
| TTTCCTTTGAATAGGAATCA+TGG | - | chr1_1:63582643-63582662 | Msa0035400:intron | 30.0% | |
| GAAATTTCAGGACTTGATAT+TGG | - | chr1_1:63582906-63582925 | Msa0035400:intron | 30.0% | |
| AAGCAGTTTACTAGTTAATG+GGG | + | chr1_1:63583049-63583068 | None:intergenic | 30.0% | |
| GAAGCAGTTTACTAGTTAAT+GGG | + | chr1_1:63583050-63583069 | None:intergenic | 30.0% | |
| TGAAGCAGTTTACTAGTTAA+TGG | + | chr1_1:63583051-63583070 | None:intergenic | 30.0% | |
| GTATCAGAATATTACGATGA+AGG | + | chr1_1:63583163-63583182 | None:intergenic | 30.0% | |
| CTGTTTGTCATCGAAATTTA+AGG | + | chr1_1:63583322-63583341 | None:intergenic | 30.0% | |
| CTTAAATTTCGATGACAAAC+AGG | - | chr1_1:63583320-63583339 | Msa0035400:CDS | 30.0% | |
| GTACACAACTGTATGTATAT+GGG | - | chr1_1:63583709-63583728 | Msa0035400:intron | 30.0% | |
| !! | TCTGAAATGCAAATTTTGTC+TGG | + | chr1_1:63583817-63583836 | None:intergenic | 30.0% |
| ATTTGCATTTCAGACTGTTA+TGG | - | chr1_1:63583823-63583842 | Msa0035400:intron | 30.0% | |
| TTTGCATTTCAGACTGTTAT+GGG | - | chr1_1:63583824-63583843 | Msa0035400:intron | 30.0% | |
| ACTGTTATGGGAATAATTAC+AGG | - | chr1_1:63583836-63583855 | Msa0035400:intron | 30.0% | |
| TCTGTTAAGAATTCTGATGT+CGG | - | chr1_1:63583892-63583911 | Msa0035400:intron | 30.0% | |
| ! | AGAAGAAACTTATTTCTCAC+AGG | + | chr1_1:63583961-63583980 | None:intergenic | 30.0% |
| TTCTTCTTATTCTATCTACC+AGG | - | chr1_1:63583974-63583993 | Msa0035400:intron | 30.0% | |
| ! | GTTAGTGTAAATTTAGGATG+CGG | - | chr1_1:63584611-63584630 | Msa0035400:intron | 30.0% |
| TGTGCATATTTATTTGTGCA+TGG | + | chr1_1:63584707-63584726 | None:intergenic | 30.0% | |
| ACACTTTAAATGTGGAGAAT+TGG | - | chr1_1:63584761-63584780 | Msa0035400:five_prime_UTR | 30.0% | |
| TGTGTGGAATTGTAAAACAG+AGG | + | chr1_1:63578226-63578245 | None:intergenic | 35.0% | |
| AAGGAAGAAAGATATTGTGG+TGG | + | chr1_1:63578275-63578294 | None:intergenic | 35.0% | |
| TTCTTCTTCTTCTTTATCCC+TGG | - | chr1_1:63578299-63578318 | Msa0035400:three_prime_UTR | 35.0% | |
| TCTTCTTCTTCTTGTAATGG+TGG | - | chr1_1:63578397-63578416 | Msa0035400:CDS | 35.0% | |
| TGAAGTTACCTTAAGTAGCA+TGG | + | chr1_1:63578464-63578483 | None:intergenic | 35.0% | |
| AAGAGGTTACTTGAACAAAC+AGG | + | chr1_1:63578569-63578588 | None:intergenic | 35.0% | |
| !!! | AGAACCTTTAGAGTCACTTT+TGG | - | chr1_1:63578921-63578940 | Msa0035400:intron | 35.0% |
| AAAGAAAGCTAGCTAGAAGT+AGG | - | chr1_1:63579287-63579306 | Msa0035400:intron | 35.0% | |
| ! | GGGTTCTAATTTCTCTTATG+GGG | + | chr1_1:63579319-63579338 | None:intergenic | 35.0% |
| TTCTACTTCATGTGTTCTCT+GGG | - | chr1_1:63579369-63579388 | Msa0035400:intron | 35.0% | |
| ! | TGATTGACATTTTCTTGTGC+AGG | - | chr1_1:63579397-63579416 | Msa0035400:intron | 35.0% |
| TAATAACATGACAGAAGCCA+TGG | - | chr1_1:63579496-63579515 | Msa0035400:intron | 35.0% | |
| AATAACATGACAGAAGCCAT+GGG | - | chr1_1:63579497-63579516 | Msa0035400:intron | 35.0% | |
| TGAAACAAAATGAAACCTGC+AGG | + | chr1_1:63580086-63580105 | None:intergenic | 35.0% | |
| TTGAATGTCATTGCATGTGT+AGG | + | chr1_1:63580409-63580428 | None:intergenic | 35.0% | |
| TTATCGGGTTTAGATTGACT+AGG | - | chr1_1:63580520-63580539 | Msa0035400:intron | 35.0% | |
| AATCAGAAACTGTCTATGCA+AGG | + | chr1_1:63580654-63580673 | None:intergenic | 35.0% | |
| AGTTTCTGATTTCGTAGTAC+CGG | - | chr1_1:63580663-63580682 | Msa0035400:intron | 35.0% | |
| ATTATATCGTGGATGTTGCA+GGG | - | chr1_1:63580829-63580848 | Msa0035400:intron | 35.0% | |
| ACATATATACATTGCACTGC+TGG | - | chr1_1:63580935-63580954 | Msa0035400:intron | 35.0% | |
| ATGTCTCTTGGTTTCATTTC+TGG | - | chr1_1:63580985-63581004 | Msa0035400:CDS | 35.0% | |
| !! | GGAGATTTAGAGCTTGTTTT+TGG | - | chr1_1:63581445-63581464 | Msa0035400:intron | 35.0% |
| !!! | GGTTACAAAGTTTTCTAGCT+AGG | - | chr1_1:63581694-63581713 | Msa0035400:intron | 35.0% |
| !!! | GCATATATGTTTTGGGTTCA+GGG | - | chr1_1:63581788-63581807 | Msa0035400:intron | 35.0% |
| TCAGGGTTATAAACTCAATG+AGG | - | chr1_1:63581805-63581824 | Msa0035400:intron | 35.0% | |
| TGCAACTATCAATGCTACAA+CGG | - | chr1_1:63582038-63582057 | Msa0035400:intron | 35.0% | |
| GAGCTCTATGACATAAAGAA+AGG | + | chr1_1:63582213-63582232 | None:intergenic | 35.0% | |
| !!! | CAGTTTCTTTTGCTATTGGA+GGG | - | chr1_1:63582268-63582287 | Msa0035400:intron | 35.0% |
| AGACCATGATTCCTATTCAA+AGG | + | chr1_1:63582649-63582668 | None:intergenic | 35.0% | |
| CAGACAACTAACAGACAATA+CGG | + | chr1_1:63582715-63582734 | None:intergenic | 35.0% | |
| TTTCAGGACTTGATATTGGA+TGG | - | chr1_1:63582910-63582929 | Msa0035400:intron | 35.0% | |
| TTCAGGACTTGATATTGGAT+GGG | - | chr1_1:63582911-63582930 | Msa0035400:intron | 35.0% | |
| AAAGTTAATGCTGCAGTACA+TGG | - | chr1_1:63582997-63583016 | Msa0035400:intron | 35.0% | |
| TTACTAGTTAATGGGGATGA+TGG | + | chr1_1:63583042-63583061 | None:intergenic | 35.0% | |
| !! | TTTTGGAAATGTCCACATGT+AGG | - | chr1_1:63583096-63583115 | Msa0035400:intron | 35.0% |
| GCACAAATGTTCAATTTCAG+AGG | - | chr1_1:63583539-63583558 | Msa0035400:intron | 35.0% | |
| GAGATAGAAAACCAGATACA+GGG | + | chr1_1:63583598-63583617 | None:intergenic | 35.0% | |
| AGAGATAGAAAACCAGATAC+AGG | + | chr1_1:63583599-63583618 | None:intergenic | 35.0% | |
| GGTACACAACTGTATGTATA+TGG | - | chr1_1:63583708-63583727 | Msa0035400:intron | 35.0% | |
| TGTATGTATATGGGTACAAC+TGG | - | chr1_1:63583718-63583737 | Msa0035400:intron | 35.0% | |
| TCTTATTCTATCTACCAGGA+AGG | - | chr1_1:63583978-63583997 | Msa0035400:intron | 35.0% | |
| CTTATTCTATCTACCAGGAA+GGG | - | chr1_1:63583979-63583998 | Msa0035400:intron | 35.0% | |
| GAGTACAAGTACATTGTTGA+TGG | - | chr1_1:63584008-63584027 | Msa0035400:intron | 35.0% | |
| ! | AGTACATTGTTGATGGAGAA+TGG | - | chr1_1:63584015-63584034 | Msa0035400:intron | 35.0% |
| ATATGCTGTGGTACATTGTA+TGG | + | chr1_1:63584167-63584186 | None:intergenic | 35.0% | |
| !! | AAGAATAACGGACACAAACT+CGG | + | chr1_1:63584280-63584299 | None:intergenic | 35.0% |
| ATATCTCATGCTCTTTGAAC+AGG | - | chr1_1:63584350-63584369 | Msa0035400:intron | 35.0% | |
| CAAATGTCTGTATCATAGTG+CGG | - | chr1_1:63584725-63584744 | Msa0035400:five_prime_UTR | 35.0% | |
| AGATTCGCACACTTTAAATG+TGG | - | chr1_1:63584753-63584772 | Msa0035400:five_prime_UTR | 35.0% | |
| !! | ACATTGATTTGCAGATGTCT+AGG | + | chr1_1:63584804-63584823 | None:intergenic | 35.0% |
| TTCAGAATCTGAATCTTCCC+AGG | - | chr1_1:63578122-63578141 | Msa0035400:three_prime_UTR | 40.0% | |
| GTGGAATTGTAAAACAGAGG+AGG | + | chr1_1:63578223-63578242 | None:intergenic | 40.0% | |
| GAGAGAGATATAGCATACCA+GGG | + | chr1_1:63578319-63578338 | None:intergenic | 40.0% | |
| AGAGAGAGATATAGCATACC+AGG | + | chr1_1:63578320-63578339 | None:intergenic | 40.0% | |
| !! | TTGTAATGGTGGACATACAC+AGG | - | chr1_1:63578408-63578427 | Msa0035400:CDS | 40.0% |
| !! | TGTAATGGTGGACATACACA+GGG | - | chr1_1:63578409-63578428 | Msa0035400:CDS | 40.0% |
| GTTACCTTAAGTAGCATGGT+TGG | + | chr1_1:63578460-63578479 | None:intergenic | 40.0% | |
| !! | CATTTTGGTGTATGCTAGAG+AGG | - | chr1_1:63579251-63579270 | Msa0035400:intron | 40.0% |
| CTTCTACTTCATGTGTTCTC+TGG | - | chr1_1:63579368-63579387 | Msa0035400:intron | 40.0% | |
| TCTACTTCATGTGTTCTCTG+GGG | - | chr1_1:63579370-63579389 | Msa0035400:intron | 40.0% | |
| ATTAAACATACCAGCACCCA+TGG | + | chr1_1:63579516-63579535 | None:intergenic | 40.0% | |
| GAACTACAACTTCATCCTTC+CGG | - | chr1_1:63580041-63580060 | Msa0035400:intron | 40.0% | |
| CATGATCCAACAATCAAGTC+CGG | + | chr1_1:63580063-63580082 | None:intergenic | 40.0% | |
| TGTGACAGAACTGAATCATC+AGG | + | chr1_1:63580119-63580138 | None:intergenic | 40.0% | |
| CAGTTCTGTCACATATAGTC+TGG | - | chr1_1:63580126-63580145 | Msa0035400:intron | 40.0% | |
| TGTGTAGGCATATTCTCGTA+TGG | + | chr1_1:63580394-63580413 | None:intergenic | 40.0% | |
| TGCTGAGATAAGGTTCGTAA+TGG | - | chr1_1:63580437-63580456 | Msa0035400:CDS | 40.0% | |
| ! | TCTCACAGCTTATGGGTTTT+TGG | - | chr1_1:63580606-63580625 | Msa0035400:intron | 40.0% |
| ! | CTCACAGCTTATGGGTTTTT+GGG | - | chr1_1:63580607-63580626 | Msa0035400:intron | 40.0% |
| ! | TGACTGAAGTTTTACCCATC+CGG | + | chr1_1:63580685-63580704 | None:intergenic | 40.0% |
| TGCATGACATACAATGGCAT+CGG | + | chr1_1:63580800-63580819 | None:intergenic | 40.0% | |
| CATTATATCGTGGATGTTGC+AGG | - | chr1_1:63580828-63580847 | Msa0035400:intron | 40.0% | |
| ! | GGACTGATGCTGAATGTTTT+CGG | - | chr1_1:63581118-63581137 | Msa0035400:intron | 40.0% |
| ! | ATGTTTTCGGTGATCTCTCA+TGG | - | chr1_1:63581131-63581150 | Msa0035400:intron | 40.0% |
| AGCACACAATAGCAATAGAG+AGG | - | chr1_1:63581275-63581294 | Msa0035400:intron | 40.0% | |
| ACACAATAGCAATAGAGAGG+TGG | - | chr1_1:63581278-63581297 | Msa0035400:intron | 40.0% | |
| CACAATAGCAATAGAGAGGT+GGG | - | chr1_1:63581279-63581298 | Msa0035400:intron | 40.0% | |
| ATTCCCACTAAGCTGAAATG+CGG | + | chr1_1:63581340-63581359 | None:intergenic | 40.0% | |
| ! | TGTAATTACCGAGGGCTTTT+TGG | + | chr1_1:63581364-63581383 | None:intergenic | 40.0% |
| CCCTAATGTGTAATTACCGA+GGG | + | chr1_1:63581372-63581391 | None:intergenic | 40.0% | |
| CCCTCGGTAATTACACATTA+GGG | - | chr1_1:63581369-63581388 | Msa0035400:intron | 40.0% | |
| AACACAAAGGTTGAGCTTTG+TGG | - | chr1_1:63581560-63581579 | Msa0035400:intron | 40.0% | |
| ATAGAGTTCCACGAGTTAGT+TGG | - | chr1_1:63581622-63581641 | Msa0035400:intron | 40.0% | |
| TAGAGTTCCACGAGTTAGTT+GGG | - | chr1_1:63581623-63581642 | Msa0035400:intron | 40.0% | |
| AATTCAACCCAACTAACTCG+TGG | + | chr1_1:63581633-63581652 | None:intergenic | 40.0% | |
| AACTGTTAGACAATGGCCAA+TGG | + | chr1_1:63581752-63581771 | None:intergenic | 40.0% | |
| !!! | GGCATATATGTTTTGGGTTC+AGG | - | chr1_1:63581787-63581806 | Msa0035400:intron | 40.0% |
| TGAGGCTAATACACTACTTC+TGG | - | chr1_1:63581823-63581842 | Msa0035400:intron | 40.0% | |
| AGTATGTCTATTGAGGTTCG+TGG | - | chr1_1:63581886-63581905 | Msa0035400:CDS | 40.0% | |
| !! | TGGCCAGTTTCTTTTGCTAT+TGG | - | chr1_1:63582264-63582283 | Msa0035400:intron | 40.0% |
| CCTCCAATAGCAAAAGAAAC+TGG | + | chr1_1:63582270-63582289 | None:intergenic | 40.0% | |
| !!! | CCAGTTTCTTTTGCTATTGG+AGG | - | chr1_1:63582267-63582286 | Msa0035400:intron | 40.0% |
| ! | CTTTTTATGGCATCCAGCTT+TGG | + | chr1_1:63582362-63582381 | None:intergenic | 40.0% |
| !! | ATCGGCTGTTGCACTTTTTA+TGG | + | chr1_1:63582375-63582394 | None:intergenic | 40.0% |
| TATACCGTGACTTCTAATGC+TGG | - | chr1_1:63582436-63582455 | Msa0035400:intron | 40.0% | |
| GTATCCAGCATTAGAAGTCA+CGG | + | chr1_1:63582443-63582462 | None:intergenic | 40.0% | |
| AAGAGATTGTCTGCAACATC+TGG | + | chr1_1:63582479-63582498 | None:intergenic | 40.0% | |
| CCTACGCAATAGATGATTCT+AGG | + | chr1_1:63582556-63582575 | None:intergenic | 40.0% | |
| CCTAGAATCATCTATTGCGT+AGG | - | chr1_1:63582553-63582572 | Msa0035400:intron | 40.0% | |
| ! | TCATGGTCTGAGATATTGCA+TGG | - | chr1_1:63582660-63582679 | Msa0035400:intron | 40.0% |
| CTTTGGTCCTTAAAGCTTAC+AGG | - | chr1_1:63582828-63582847 | Msa0035400:intron | 40.0% | |
| ACTAAGGCCTGTAAGCTTTA+AGG | + | chr1_1:63582838-63582857 | None:intergenic | 40.0% | |
| AAGTGACAGGCTTCTTACTA+AGG | + | chr1_1:63582854-63582873 | None:intergenic | 40.0% | |
| TCAGGACTTGATATTGGATG+GGG | - | chr1_1:63582912-63582931 | Msa0035400:intron | 40.0% | |
| GAAAAACAAAGGCCTACATG+TGG | + | chr1_1:63583111-63583130 | None:intergenic | 40.0% | |
| !!! | GTAGGCCTTTGTTTTTCTGT+TGG | - | chr1_1:63583114-63583133 | Msa0035400:intron | 40.0% |
| !! | TTAAGGGCACTCTCTGAAAA+GGG | + | chr1_1:63583305-63583324 | None:intergenic | 40.0% |
| !! | TTTAAGGGCACTCTCTGAAA+AGG | + | chr1_1:63583306-63583325 | None:intergenic | 40.0% |
| ! | TCTTTTTCTCTCCCTGTATC+TGG | - | chr1_1:63583584-63583603 | Msa0035400:intron | 40.0% |
| TTGACATGGCCATCTTCATT+GGG | + | chr1_1:63584071-63584090 | None:intergenic | 40.0% | |
| ATTGACATGGCCATCTTCAT+TGG | + | chr1_1:63584072-63584091 | None:intergenic | 40.0% | |
| AATGTGAGCAGTATATGCTG+TGG | + | chr1_1:63584179-63584198 | None:intergenic | 40.0% | |
| ATCTACTAAAGCCTCACCAT+AGG | - | chr1_1:63584217-63584236 | Msa0035400:intron | 40.0% | |
| TCTACTAAAGCCTCACCATA+GGG | - | chr1_1:63584218-63584237 | Msa0035400:intron | 40.0% | |
| ATGGTTCAGAGATCCTCATT+GGG | + | chr1_1:63584489-63584508 | None:intergenic | 40.0% | |
| TCAACAAGCAAGTGCATTGA+TGG | + | chr1_1:63584508-63584527 | None:intergenic | 40.0% | |
| CTGTAACAGAGAGCTTAGTA+AGG | + | chr1_1:63584592-63584611 | None:intergenic | 40.0% | |
| TGTGGAGAATTGGAGAATCA+TGG | - | chr1_1:63584771-63584790 | Msa0035400:five_prime_UTR | 40.0% | |
| GTGGAGAATTGGAGAATCAT+GGG | - | chr1_1:63584772-63584791 | Msa0035400:five_prime_UTR | 40.0% | |
| CTGTGTAACTGTGTTGTGTG+GGG | + | chr1_1:63578022-63578041 | None:intergenic | 45.0% | |
| CCTGTGTAACTGTGTTGTGT+GGG | + | chr1_1:63578023-63578042 | None:intergenic | 45.0% | |
| ACCTGTGTAACTGTGTTGTG+TGG | + | chr1_1:63578024-63578043 | None:intergenic | 45.0% | |
| TCTGTTCTTGTTGCTGCTGA+TGG | + | chr1_1:63578083-63578102 | None:intergenic | 45.0% | |
| ! | CACTCCAACCATGCTACTTA+AGG | - | chr1_1:63578453-63578472 | Msa0035400:intron | 45.0% |
| AGGGCCAAAAGTGACTCTAA+AGG | + | chr1_1:63578928-63578947 | None:intergenic | 45.0% | |
| ATCCTTCCGGACTTGATTGT+TGG | - | chr1_1:63580054-63580073 | Msa0035400:intron | 45.0% | |
| ATCCAACAATCAAGTCCGGA+AGG | + | chr1_1:63580059-63580078 | None:intergenic | 45.0% | |
| TATCAACGTCTTCAGGAGTC+TGG | + | chr1_1:63580185-63580204 | None:intergenic | 45.0% | |
| CGCAGTTTATCAACGTCTTC+AGG | + | chr1_1:63580192-63580211 | None:intergenic | 45.0% | |
| AACACTTGCGTGCTGAGATA+AGG | - | chr1_1:63580427-63580446 | Msa0035400:intron | 45.0% | |
| ! | TCTGATTTCGTAGTACCGGA+TGG | - | chr1_1:63580667-63580686 | Msa0035400:intron | 45.0% |
| ! | CTGATTTCGTAGTACCGGAT+GGG | - | chr1_1:63580668-63580687 | Msa0035400:intron | 45.0% |
| ATACATTGCACTGCTGGACT+TGG | - | chr1_1:63580941-63580960 | Msa0035400:intron | 45.0% | |
| GCCCTCGGTAATTACACATT+AGG | - | chr1_1:63581368-63581387 | Msa0035400:intron | 45.0% | |
| GCCCTAATGTGTAATTACCG+AGG | + | chr1_1:63581373-63581392 | None:intergenic | 45.0% | |
| TTTCCACCGTAGAGCAATTG+CGG | + | chr1_1:63582890-63582909 | None:intergenic | 45.0% | |
| TGCTCTACGGTGGAAATTTC+AGG | - | chr1_1:63582894-63582913 | Msa0035400:intron | 45.0% | |
| CAGGACTTGATATTGGATGG+GGG | - | chr1_1:63582913-63582932 | Msa0035400:intron | 45.0% | |
| TCGATGACAAACAGGGTTCA+TGG | - | chr1_1:63583328-63583347 | Msa0035400:CDS | 45.0% | |
| GGGTTCATGGTTTCTCAAGA+AGG | - | chr1_1:63583341-63583360 | Msa0035400:CDS | 45.0% | |
| GTAACCTCTCCCAATGAAGA+TGG | - | chr1_1:63584059-63584078 | Msa0035400:intron | 45.0% | |
| GTACTGAAAATCCCTCCCTA+TGG | + | chr1_1:63584236-63584255 | None:intergenic | 45.0% | |
| !! | ATAACGGACACAAACTCGGA+TGG | + | chr1_1:63584276-63584295 | None:intergenic | 45.0% |
| !! | TGAACAGGTCCTTGATGATG+CGG | - | chr1_1:63584365-63584384 | Msa0035400:CDS | 45.0% |
| TGATGATCCTGATCTCACGA+AGG | - | chr1_1:63584425-63584444 | Msa0035400:intron | 45.0% | |
| GATGGTTCAGAGATCCTCAT+TGG | + | chr1_1:63584490-63584509 | None:intergenic | 45.0% | |
| ATGTCTGTATCATAGTGCGG+TGG | - | chr1_1:63584728-63584747 | Msa0035400:five_prime_UTR | 45.0% | |
| TAACTGTGTTGTGTGGGGCT+GGG | + | chr1_1:63578017-63578036 | None:intergenic | 50.0% | |
| CCCACACAACACAGTTACAC+AGG | - | chr1_1:63578020-63578039 | Msa0035400:three_prime_UTR | 50.0% | |
| ! | AAGATATTGTGGTGGCGAGC+AGG | + | chr1_1:63578267-63578286 | None:intergenic | 50.0% |
| TTTCTTGTGCAGGCTGCTTC+TGG | - | chr1_1:63579407-63579426 | Msa0035400:intron | 50.0% | |
| GAGCTACTTGTCTCTGCACT+CGG | + | chr1_1:63579440-63579459 | None:intergenic | 50.0% | |
| !! | GACAAGTAGCTCTGATGTCG+AGG | - | chr1_1:63579448-63579467 | Msa0035400:intron | 50.0% |
| !! | AAGTAGCTCTGATGTCGAGG+AGG | - | chr1_1:63579451-63579470 | Msa0035400:intron | 50.0% |
| GATTGTTGGATCATGCCTGC+AGG | - | chr1_1:63580068-63580087 | Msa0035400:intron | 50.0% | |
| TGATCTACGAAAGCGGCTTC+CGG | - | chr1_1:63580865-63580884 | Msa0035400:intron | 50.0% | |
| AAGAGACATACCGCAACAGC+TGG | + | chr1_1:63580974-63580993 | None:intergenic | 50.0% | |
| AGCTGTTGCGGTATGTCTCT+TGG | - | chr1_1:63580973-63580992 | Msa0035400:intron | 50.0% | |
| AATAGAGAGGTGGGAGCTGA+GGG | - | chr1_1:63581288-63581307 | Msa0035400:intron | 50.0% | |
| AGCAGCAGAGGATACTCTAG+CGG | + | chr1_1:63581317-63581336 | None:intergenic | 50.0% | |
| TGCTCCGCATTTCAGCTTAG+TGG | - | chr1_1:63581333-63581352 | Msa0035400:intron | 50.0% | |
| GCTCCGCATTTCAGCTTAGT+GGG | - | chr1_1:63581334-63581353 | Msa0035400:intron | 50.0% | |
| TGGGAATGCCAAAAAGCCCT+CGG | - | chr1_1:63581353-63581372 | Msa0035400:intron | 50.0% | |
| AACTTTGTAACCACGACGCG+TGG | + | chr1_1:63581686-63581705 | None:intergenic | 50.0% | |
| AAGGTCATGCTGTCCAAAGC+TGG | - | chr1_1:63582346-63582365 | Msa0035400:intron | 50.0% | |
| !! | AGAAGCCTGTCACTTTGTCG+TGG | - | chr1_1:63582859-63582878 | Msa0035400:intron | 50.0% |
| !! | GAAGCCTGTCACTTTGTCGT+GGG | - | chr1_1:63582860-63582879 | Msa0035400:intron | 50.0% |
| !! | AAGCCTGTCACTTTGTCGTG+GGG | - | chr1_1:63582861-63582880 | Msa0035400:intron | 50.0% |
| ACTTGATATTGGATGGGGGC+AGG | - | chr1_1:63582917-63582936 | Msa0035400:intron | 50.0% | |
| ATGGCCATCTTCATTGGGAG+AGG | + | chr1_1:63584066-63584085 | None:intergenic | 50.0% | |
| ACTAAAGCCTCACCATAGGG+AGG | - | chr1_1:63584221-63584240 | Msa0035400:intron | 50.0% | |
| CTAAAGCCTCACCATAGGGA+GGG | - | chr1_1:63584222-63584241 | Msa0035400:intron | 50.0% | |
| GAAAATCCCTCCCTATGGTG+AGG | + | chr1_1:63584231-63584250 | None:intergenic | 50.0% | |
| CGTTCATCCTTCGTGAGATC+AGG | + | chr1_1:63584435-63584454 | None:intergenic | 50.0% | |
| TCTGGAAGCTCTTCCCAATG+AGG | - | chr1_1:63584473-63584492 | Msa0035400:intron | 50.0% | |
| GTAACTGTGTTGTGTGGGGC+TGG | + | chr1_1:63578018-63578037 | None:intergenic | 55.0% | |
| GAGGAGGAGCAGATAGTGTG+TGG | + | chr1_1:63578242-63578261 | None:intergenic | 55.0% | |
| !! | TAGCTCTGATGTCGAGGAGG+AGG | - | chr1_1:63579454-63579473 | Msa0035400:CDS | 55.0% |
| ATGACAGAAGCCATGGGTGC+TGG | - | chr1_1:63579503-63579522 | Msa0035400:intron | 55.0% | |
| CAACGTCTTCAGGAGTCTGG+TGG | + | chr1_1:63580182-63580201 | None:intergenic | 55.0% | |
| TGGAAGAGCTCCAGCTGTTG+CGG | - | chr1_1:63580961-63580980 | Msa0035400:intron | 55.0% | |
| CGGTGATCTCTCATGGCGAA+TGG | - | chr1_1:63581138-63581157 | Msa0035400:intron | 55.0% | |
| CAATAGAGAGGTGGGAGCTG+AGG | - | chr1_1:63581287-63581306 | Msa0035400:intron | 55.0% | |
| TGTCCCCACGACAAAGTGAC+AGG | + | chr1_1:63582867-63582886 | None:intergenic | 55.0% | |
| GGGACACCGCAATTGCTCTA+CGG | - | chr1_1:63582881-63582900 | Msa0035400:intron | 55.0% | |
| ACACCGCAATTGCTCTACGG+TGG | - | chr1_1:63582884-63582903 | Msa0035400:intron | 55.0% | |
| !! | GTCCTTGATGATGCGGACAG+TGG | - | chr1_1:63584372-63584391 | Msa0035400:CDS | 55.0% |
| ACCAGTCACTCTCTCCCGAA+GGG | + | chr1_1:63584406-63584425 | None:intergenic | 55.0% | |
| GTGGGGCTGGGATGGTTTGA+AGG | + | chr1_1:63578005-63578024 | None:intergenic | 60.0% | |
| TGTGTTGTGTGGGGCTGGGA+TGG | + | chr1_1:63578013-63578032 | None:intergenic | 60.0% | |
| ! | TTGTGGTGGCGAGCAGGAAG+AGG | + | chr1_1:63578261-63578280 | None:intergenic | 60.0% |
| GCTGAAATGCGGAGCAGCAG+AGG | + | chr1_1:63581329-63581348 | None:intergenic | 60.0% | |
| TGTACTCGTAGCGCCCTTCC+TGG | + | chr1_1:63583995-63584014 | None:intergenic | 60.0% | |
| GGCCACTGTCCGCATCATCA+AGG | + | chr1_1:63584377-63584396 | None:intergenic | 60.0% | |
| AGTCACTCTCTCCCGAAGGG+AGG | + | chr1_1:63584403-63584422 | None:intergenic | 60.0% | |
| TCCCTTCGGGAGAGAGTGAC+TGG | - | chr1_1:63584402-63584421 | Msa0035400:intron | 60.0% | |
| CACCAGTCACTCTCTCCCGA+AGG | + | chr1_1:63584407-63584426 | None:intergenic | 60.0% | |
| ! | TGGTGGCGAGCAGGAAGAGG+AGG | + | chr1_1:63578258-63578277 | None:intergenic | 65.0% |
| AGAGAGGTGGGAGCTGAGGG+TGG | - | chr1_1:63581291-63581310 | Msa0035400:intron | 65.0% | |
| ACAGTGGCCGTGCCTCCCTT+CGG | - | chr1_1:63584388-63584407 | Msa0035400:intron | 65.0% | |
| CTCTCTCCCGAAGGGAGGCA+CGG | + | chr1_1:63584398-63584417 | None:intergenic | 65.0% | |
| CGCACGCATACCACGCGTCG+TGG | - | chr1_1:63581673-63581692 | Msa0035400:intron | 70.0% | |
| CAGTGGCCGTGCCTCCCTTC+GGG | - | chr1_1:63584389-63584408 | Msa0035400:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 63577999 | 63584826 | 63577999 | ID=Msa0035400;Name=Msa0035400 |
| chr1_1 | mRNA | 63577999 | 63584826 | 63577999 | ID=Msa0035400-mRNA-1;Parent=Msa0035400;Name=Msa0035400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=113|0.91|1|1|1|1|13|323|361 |
| chr1_1 | exon | 63577999 | 63578453 | 63577999 | ID=Msa0035400-mRNA-1:exon:20259;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63578722 | 63578829 | 63578722 | ID=Msa0035400-mRNA-1:exon:20258;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63579454 | 63579513 | 63579454 | ID=Msa0035400-mRNA-1:exon:20257;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63579887 | 63579982 | 63579887 | ID=Msa0035400-mRNA-1:exon:20256;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63580428 | 63580484 | 63580428 | ID=Msa0035400-mRNA-1:exon:20255;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63580981 | 63581040 | 63580981 | ID=Msa0035400-mRNA-1:exon:20254;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63581843 | 63581975 | 63581843 | ID=Msa0035400-mRNA-1:exon:20253;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63582563 | 63582639 | 63582563 | ID=Msa0035400-mRNA-1:exon:20252;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63582736 | 63582812 | 63582736 | ID=Msa0035400-mRNA-1:exon:20251;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63583301 | 63583406 | 63583301 | ID=Msa0035400-mRNA-1:exon:20250;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63584351 | 63584395 | 63584351 | ID=Msa0035400-mRNA-1:exon:20249;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63584505 | 63584607 | 63584505 | ID=Msa0035400-mRNA-1:exon:20248;Parent=Msa0035400-mRNA-1 |
| chr1_1 | exon | 63584682 | 63584826 | 63584682 | ID=Msa0035400-mRNA-1:exon:20247;Parent=Msa0035400-mRNA-1 |
| chr1_1 | five_prime_UTR | 63584714 | 63584826 | 63584714 | ID=Msa0035400-mRNA-1:five_prime_utr;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63584682 | 63584713 | 63584682 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63584505 | 63584607 | 63584505 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63584351 | 63584395 | 63584351 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63583301 | 63583406 | 63583301 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63582736 | 63582812 | 63582736 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63582563 | 63582639 | 63582563 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63581843 | 63581975 | 63581843 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63580981 | 63581040 | 63580981 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63580428 | 63580484 | 63580428 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63579887 | 63579982 | 63579887 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63579454 | 63579513 | 63579454 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63578722 | 63578829 | 63578722 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | CDS | 63578322 | 63578453 | 63578322 | ID=Msa0035400-mRNA-1:cds;Parent=Msa0035400-mRNA-1 |
| chr1_1 | three_prime_UTR | 63577999 | 63578321 | 63577999 | ID=Msa0035400-mRNA-1:three_prime_utr;Parent=Msa0035400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
