Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001310 | sp|Q7ZUC7|PGES2_DANRE | 43.522 | 301 | 121 | 8 | 64 | 315 | 77 | 377 | 4.42e-73 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001310 | G7J598 | 92.260 | 323 | 20 | 2 | 1 | 319 | 1 | 322 | 0.0 | 617 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001310 | Msa0012850 | 0.807314 | 5.371140e-50 | -8.615850e-47 |
| Msa0001310 | Msa0523040 | 0.919445 | 4.460077e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001310 | MtrunA17_Chr3g0142901 | 92.260 | 323 | 20 | 2 | 1 | 319 | 1 | 322 | 0.0 | 617 |
| Msa0001310 | MtrunA17_Chr6g0478371 | 66.023 | 259 | 82 | 1 | 67 | 319 | 67 | 325 | 1.72e-123 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001310 | AT5G42150.1 | 60.312 | 320 | 117 | 6 | 1 | 317 | 1 | 313 | 3.65e-130 | 374 |
Find 97 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTCTGCAACAAGGTTAA+AGG | 0.172768 | 1_1:-3012632 | Msa0001310:intron |
| TTCTACTTATGCACTCATTC+TGG | 0.244607 | 1_1:+3009968 | None:intergenic |
| TCTAAGCGAGTTTCAACTTA+TGG | 0.245710 | 1_1:-3009941 | Msa0001310:three_prime_UTR |
| AAATGGTTCCGGCAGGGTTT+AGG | 0.245806 | 1_1:+3012998 | None:intergenic |
| GCAGCGACGTCATCGGATTT+AGG | 0.257070 | 1_1:-3012772 | Msa0001310:CDS |
| TTAGCAGATCTTGCTGTCTT+TGG | 0.282368 | 1_1:-3010095 | Msa0001310:CDS |
| AATGGTTCCGGCAGGGTTTA+GGG | 0.297798 | 1_1:+3012999 | None:intergenic |
| ACAGCAAGATCTGCTAAATT+AGG | 0.304403 | 1_1:+3010101 | None:intergenic |
| GAACAATTGGTTGATTCTTC+AGG | 0.311379 | 1_1:-3012386 | Msa0001310:intron |
| CGCAGTGGAGTTGGCTCTTA+AGG | 0.323747 | 1_1:+3012898 | None:intergenic |
| TGAACAAGAAAGAGATTAAT+TGG | 0.326433 | 1_1:-3012448 | Msa0001310:CDS |
| GGGTTAGTTGAAGTCAAATA+TGG | 0.327626 | 1_1:+3012842 | None:intergenic |
| TTGAAGGGCCGAAAATTTCT+TGG | 0.349657 | 1_1:-3010249 | Msa0001310:intron |
| GTTCTGATCCTCTTGCTTTG+AGG | 0.358054 | 1_1:+3012705 | None:intergenic |
| CGAGTTTCAACTTATGGATA+AGG | 0.368526 | 1_1:-3009935 | Msa0001310:three_prime_UTR |
| GAAACAGTTCGATATATGTT+TGG | 0.369362 | 1_1:+3011684 | None:intergenic |
| GAGAGGTTAGTGGCTAAGTA+TGG | 0.381448 | 1_1:-3010378 | Msa0001310:CDS |
| TGTTCTATTATTCATTATCA+TGG | 0.386374 | 1_1:-3009834 | Msa0001310:three_prime_UTR |
| AGCACACAAGGATTGGGAAT+TGG | 0.394438 | 1_1:-3010025 | Msa0001310:CDS |
| CACTGTTGATGGTGAACAAT+TGG | 0.398212 | 1_1:-3012399 | Msa0001310:CDS |
| GTTAGACATAATTGATAAGT+TGG | 0.398968 | 1_1:-3012271 | Msa0001310:intron |
| GACAACAATCGCGATGGAAA+TGG | 0.403432 | 1_1:+3012981 | None:intergenic |
| TCTGCATTCAAGTCATAATC+TGG | 0.405560 | 1_1:+3012234 | None:intergenic |
| ATTTCCATCGCGATTGTTGT+CGG | 0.410584 | 1_1:-3012979 | Msa0001310:five_prime_UTR |
| GTCATCGGATTTAGGTATTA+CGG | 0.419523 | 1_1:-3012764 | Msa0001310:CDS |
| CCTCAAGTCAGGTCAAGATA+TGG | 0.432018 | 1_1:-3010051 | Msa0001310:CDS |
| ATGGTAGAGCACACAAGGAT+TGG | 0.432114 | 1_1:-3010032 | Msa0001310:CDS |
| CCCATTCGCCACCTCAAGTC+AGG | 0.439804 | 1_1:-3010062 | Msa0001310:CDS |
| TTAATCTCTTTCTTGTTCAT+CGG | 0.452851 | 1_1:+3012452 | None:intergenic |
| ACAGTGGGTTGAAGCTTTGA+AGG | 0.454177 | 1_1:-3010265 | Msa0001310:CDS |
| TGGTAGAGCACACAAGGATT+GGG | 0.466759 | 1_1:-3010031 | Msa0001310:CDS |
| GTGCCTATTGTCACTGTTGA+TGG | 0.471196 | 1_1:-3012410 | Msa0001310:CDS |
| ATCATGGTTGTATAATGTAT+TGG | 0.471908 | 1_1:-3009818 | Msa0001310:three_prime_UTR |
| CAGTTTATATGAGAGGTTAG+TGG | 0.472448 | 1_1:-3010388 | Msa0001310:CDS |
| TTCGATTATATCACTACTAA+AGG | 0.473403 | 1_1:-3011645 | Msa0001310:intron |
| ACCTGACTTGAGGTGGCGAA+TGG | 0.476175 | 1_1:+3010061 | None:intergenic |
| TCACCATCAACAGTGACAAT+AGG | 0.477717 | 1_1:+3012407 | None:intergenic |
| TGCCGCCACTGCCACATCTC+CGG | 0.480271 | 1_1:-3012738 | Msa0001310:CDS |
| GGAGTTGGCTCTTAAGGCTC+TGG | 0.486808 | 1_1:+3012904 | None:intergenic |
| GGTGGAAGCCGCAGTGGAGT+TGG | 0.487473 | 1_1:+3012889 | None:intergenic |
| GATGAGCGTGAGGCTTTGTA+TGG | 0.488987 | 1_1:-3010297 | Msa0001310:CDS |
| GAACAACAGAGGGAGTTGAT+TGG | 0.494915 | 1_1:+3012795 | None:intergenic |
| TGCTCGAGGCGGTCGGAGGA+AGG | 0.495234 | 1_1:+3012868 | None:intergenic |
| ACCTTTAACCTTGTTGCAGA+AGG | 0.501255 | 1_1:+3012631 | None:intergenic |
| CGCCGGAGATGTGGCAGTGG+CGG | 0.501678 | 1_1:+3012736 | None:intergenic |
| CCAGCGTTTCTAGATTATCA+TGG | 0.503632 | 1_1:-3012503 | Msa0001310:intron |
| TAATTGATAAGTTGGTCAAA+AGG | 0.506338 | 1_1:-3012263 | Msa0001310:CDS |
| CATAATGTTCTGTAAAATCC+AGG | 0.510746 | 1_1:-3009782 | Msa0001310:three_prime_UTR |
| TATTGTTGTTTATATATACC+TGG | 0.514377 | 1_1:+3009764 | None:intergenic |
| CCTGACTTGAGGTGGCGAAT+GGG | 0.516805 | 1_1:+3010062 | None:intergenic |
| TCTGAGATGGAAAATGCAGT+TGG | 0.518885 | 1_1:-3009999 | Msa0001310:CDS |
| GATGGAAAATGCAGTTGGAC+AGG | 0.523361 | 1_1:-3009994 | Msa0001310:CDS |
| GCTTTGAGGTCTTGTTGCGC+CGG | 0.525634 | 1_1:+3012719 | None:intergenic |
| GGCTCTTAAGGCTCTGGCAA+TGG | 0.525688 | 1_1:+3012910 | None:intergenic |
| AGAAGCAAACTTATTTAATG+TGG | 0.530184 | 1_1:+3009894 | None:intergenic |
| AATCGCGATGGAAATGGTTC+CGG | 0.532097 | 1_1:+3012987 | None:intergenic |
| GTTGTTCGCAGCGACGTCAT+CGG | 0.536710 | 1_1:-3012779 | Msa0001310:CDS |
| GTATGGAGCTGCTGAACAGT+GGG | 0.539220 | 1_1:-3010280 | Msa0001310:CDS |
| AACAGAGGGAGTTGATTGGT+TGG | 0.543179 | 1_1:+3012799 | None:intergenic |
| GTCTTGTTGCGCCGGAGATG+TGG | 0.543499 | 1_1:+3012727 | None:intergenic |
| GCAATTTCAGTTTATATGAG+AGG | 0.544710 | 1_1:-3010395 | Msa0001310:CDS |
| GGTTAGTGGCTAAGTATGGT+GGG | 0.551859 | 1_1:-3010374 | Msa0001310:CDS |
| TGTATGGAGCTGCTGAACAG+TGG | 0.557881 | 1_1:-3010281 | Msa0001310:CDS |
| CCTTTAACCTTGTTGCAGAA+GGG | 0.563167 | 1_1:+3012632 | None:intergenic |
| GCGATGGAAATGGTTCCGGC+AGG | 0.567081 | 1_1:+3012991 | None:intergenic |
| GAGCTGCTCGAGGCGGTCGG+AGG | 0.571364 | 1_1:+3012864 | None:intergenic |
| AGGTTAGTGGCTAAGTATGG+TGG | 0.582553 | 1_1:-3010375 | Msa0001310:CDS |
| TAATTGGTCTCATTACAAGA+AGG | 0.583029 | 1_1:-3012432 | Msa0001310:CDS |
| CCATATCTTGACCTGACTTG+AGG | 0.583256 | 1_1:+3010051 | None:intergenic |
| TCTCTTAGACACGAAATACA+TGG | 0.584697 | 1_1:+3010344 | None:intergenic |
| ATGGAGCTGCTCGAGGCGGT+CGG | 0.588493 | 1_1:+3012861 | None:intergenic |
| TCGAGGCGGTCGGAGGAAGG+TGG | 0.590975 | 1_1:+3012871 | None:intergenic |
| AGCTTGTCCCTTCTGCAACA+AGG | 0.592945 | 1_1:-3012639 | Msa0001310:CDS |
| GTCAAATATGGAGCTGCTCG+AGG | 0.596084 | 1_1:+3012854 | None:intergenic |
| CAGTGGGTTGAAGCTTTGAA+GGG | 0.598125 | 1_1:-3010264 | Msa0001310:CDS |
| GAGGAAGGTGGAAGCCGCAG+TGG | 0.599666 | 1_1:+3012883 | None:intergenic |
| AAGATATGGTAGAGCACACA+AGG | 0.602564 | 1_1:-3010037 | Msa0001310:CDS |
| CGATGGAAATGGTTCCGGCA+GGG | 0.603446 | 1_1:+3012992 | None:intergenic |
| ATGCAGATGAAGAAAAGAAG+TGG | 0.611944 | 1_1:-3012218 | Msa0001310:CDS |
| ATCACCGACAACAATCGCGA+TGG | 0.615811 | 1_1:+3012975 | None:intergenic |
| ACGTCGCTGCGAACAACAGA+GGG | 0.620026 | 1_1:+3012785 | None:intergenic |
| CAACAAGACCTCAAAGCAAG+AGG | 0.620653 | 1_1:-3012713 | Msa0001310:CDS |
| GATAAAACCCTAAACCCTGC+CGG | 0.623297 | 1_1:-3013006 | Msa0001310:five_prime_UTR |
| TGGTATTCAGTACAAAGTGG+TGG | 0.629118 | 1_1:-3012483 | Msa0001310:CDS |
| TTGCGCCGGAGATGTGGCAG+TGG | 0.629506 | 1_1:+3012733 | None:intergenic |
| GGTTGGATACATACAAGTGT+AGG | 0.631928 | 1_1:-3009718 | Msa0001310:three_prime_UTR |
| ACTGAGCTAGCAAGAATGAG+AGG | 0.632041 | 1_1:-3012950 | Msa0001310:exon |
| GTTAGTGGCTAAGTATGGTG+GGG | 0.646752 | 1_1:-3010373 | Msa0001310:CDS |
| CAATATCACTGATGAGCGTG+AGG | 0.652789 | 1_1:-3010307 | Msa0001310:CDS |
| TATAATGTATTGGTGATCTG+TGG | 0.657602 | 1_1:-3009808 | Msa0001310:three_prime_UTR |
| TATCTTGACCTGACTTGAGG+TGG | 0.659112 | 1_1:+3010054 | None:intergenic |
| GCAAGAATGAGAGGACTCAA+CGG | 0.662333 | 1_1:-3012941 | Msa0001310:exon |
| GACGTCGCTGCGAACAACAG+AGG | 0.662716 | 1_1:+3012784 | None:intergenic |
| TCATGGTATTCAGTACAAAG+TGG | 0.680108 | 1_1:-3012486 | Msa0001310:CDS |
| TAGGTGGGTAGATAATCACT+TGG | 0.683522 | 1_1:-3011721 | Msa0001310:CDS |
| AAATATGGAGCTGCTCGAGG+CGG | 0.687546 | 1_1:+3012857 | None:intergenic |
| CTTAAGAGCCAACTCCACTG+CGG | 0.786495 | 1_1:-3012897 | Msa0001310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCTTTTTTAGTTAAAATA+CGG | - | chr1_1:3010593-3010612 | Msa0001310:intron | 10.0% |
| !! | TTAAAAAATTTAAGAGTTTA+AGG | + | chr1_1:3011741-3011760 | None:intergenic | 10.0% |
| !!! | TTTTTTCTTCCTTTTTATAT+TGG | - | chr1_1:3010909-3010928 | Msa0001310:intron | 15.0% |
| !! | AATAATCATTTGATAAATCA+AGG | + | chr1_1:3010963-3010982 | None:intergenic | 15.0% |
| !!! | GTTATCAGATATATTTTTTT+TGG | + | chr1_1:3011234-3011253 | None:intergenic | 15.0% |
| !!! | ATTTGTTGATATTATAACAA+TGG | - | chr1_1:3011280-3011299 | Msa0001310:intron | 15.0% |
| !! | TTTGTTGATATTATAACAAT+GGG | - | chr1_1:3011281-3011300 | Msa0001310:intron | 15.0% |
| !! | AAAGCTATTAAAATTAAGTA+AGG | + | chr1_1:3011650-3011669 | None:intergenic | 15.0% |
| !!! | TAAGTAAATTTTTTTCTGTA+GGG | + | chr1_1:3011679-3011698 | None:intergenic | 15.0% |
| !!! | ATAAGTAAATTTTTTTCTGT+AGG | + | chr1_1:3011680-3011699 | None:intergenic | 15.0% |
| !!! | AAACAAAATTTATTTTAGCA+GGG | + | chr1_1:3011712-3011731 | None:intergenic | 15.0% |
| !!! | TAAACAAAATTTATTTTAGC+AGG | + | chr1_1:3011713-3011732 | None:intergenic | 15.0% |
| !! | AGATATAAGTAACAAAAATA+TGG | - | chr1_1:3011872-3011891 | Msa0001310:intron | 15.0% |
| !!! | AATTTTTGCGATATTTTTTT+CGG | - | chr1_1:3011907-3011926 | Msa0001310:intron | 15.0% |
| !! | AAGCATAAATTAAACAAATT+TGG | - | chr1_1:3011991-3012010 | Msa0001310:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr1_1:3012063-3012082 | Msa0001310:intron | 15.0% |
| !! | AATATACAATAAACCACAAA+TGG | + | chr1_1:3010386-3010405 | None:intergenic | 20.0% |
| !! | ATCAATTATGTCTAACAAAA+GGG | + | chr1_1:3010447-3010466 | None:intergenic | 20.0% |
| !! | TATCAATTATGTCTAACAAA+AGG | + | chr1_1:3010448-3010467 | None:intergenic | 20.0% |
| !!! | AGATTAAGTACATATGATTT+TGG | - | chr1_1:3010937-3010956 | Msa0001310:intron | 20.0% |
| !! | AAGTTATCAGATCTTAAAAA+AGG | + | chr1_1:3011205-3011224 | None:intergenic | 20.0% |
| !!! | TGTTACATTCAGTTATTTTA+TGG | - | chr1_1:3011255-3011274 | Msa0001310:intron | 20.0% |
| !!! | AATAACTCTACATTAGTTTT+AGG | - | chr1_1:3011575-3011594 | Msa0001310:intron | 20.0% |
| !!! | ATAACTCTACATTAGTTTTA+GGG | - | chr1_1:3011576-3011595 | Msa0001310:intron | 20.0% |
| !!! | TTTAGGGTTAAATATGTTTT+TGG | - | chr1_1:3011592-3011611 | Msa0001310:intron | 20.0% |
| !!! | GTTTTTCAACAATTTTTTAC+AGG | + | chr1_1:3011961-3011980 | None:intergenic | 20.0% |
| !! | GATAAATATTGCTTCATAAA+AGG | + | chr1_1:3012202-3012221 | None:intergenic | 20.0% |
| !! | AATATTTATCAACCATTACA+AGG | - | chr1_1:3012212-3012231 | Msa0001310:intron | 20.0% |
| !! | ATATTTATCAACCATTACAA+GGG | - | chr1_1:3012213-3012232 | Msa0001310:CDS | 20.0% |
| !! | TGTTCTATTATTCATTATCA+TGG | - | chr1_1:3012888-3012907 | Msa0001310:CDS | 20.0% |
| !!! | TATTGTTGTTTATATATACC+TGG | + | chr1_1:3012961-3012980 | None:intergenic | 20.0% |
| ! | TGAAAAAGAACAACTTCTTT+GGG | + | chr1_1:3010057-3010076 | None:intergenic | 25.0% |
| ! | TTGAAAAAGAACAACTTCTT+TGG | + | chr1_1:3010058-3010077 | None:intergenic | 25.0% |
| ! | GGAAAAAATGCAAAAACAAT+AGG | + | chr1_1:3010198-3010217 | None:intergenic | 25.0% |
| ! | TTAATCTCTTTCTTGTTCAT+CGG | + | chr1_1:3010273-3010292 | None:intergenic | 25.0% |
| ! | TGAACAAGAAAGAGATTAAT+TGG | - | chr1_1:3010274-3010293 | Msa0001310:CDS | 25.0% |
| ! | TCAATTATGTCTAACAAAAG+GGG | + | chr1_1:3010446-3010465 | None:intergenic | 25.0% |
| ! | GTTAGACATAATTGATAAGT+TGG | - | chr1_1:3010451-3010470 | Msa0001310:intron | 25.0% |
| !!! | TAATTGATAAGTTGGTCAAA+AGG | - | chr1_1:3010459-3010478 | Msa0001310:intron | 25.0% |
| ! | GTTCAAATAAACAAGAAGAA+AGG | + | chr1_1:3010555-3010574 | None:intergenic | 25.0% |
| ! | TAACTAAAAAAGATAGCTAG+AGG | + | chr1_1:3010588-3010607 | None:intergenic | 25.0% |
| ! | TTTGTAATCGATCTCTAAAT+CGG | + | chr1_1:3010743-3010762 | None:intergenic | 25.0% |
| ! | ACTACTAAAAATTCTCTACT+TGG | + | chr1_1:3010801-3010820 | None:intergenic | 25.0% |
| ! | ATCTTGCATCCAATATAAAA+AGG | + | chr1_1:3010921-3010940 | None:intergenic | 25.0% |
| ! | TTCGATTATATCACTACTAA+AGG | - | chr1_1:3011077-3011096 | Msa0001310:intron | 25.0% |
| ! | TTATATCACTACTAAAGGTA+AGG | - | chr1_1:3011082-3011101 | Msa0001310:intron | 25.0% |
| ! | TTAATATTTGATGAATCAGG+AGG | + | chr1_1:3011348-3011367 | None:intergenic | 25.0% |
| ! | AGCTTAATATTTGATGAATC+AGG | + | chr1_1:3011351-3011370 | None:intergenic | 25.0% |
| !!! | AACATACAGCTTTAAAAACA+TGG | + | chr1_1:3011418-3011437 | None:intergenic | 25.0% |
| !!! | TTAAAGCTGTATGTTTTGAA+AGG | - | chr1_1:3011423-3011442 | Msa0001310:intron | 25.0% |
| !!! | TAGAGTTATTTTTCAAACTG+AGG | + | chr1_1:3011565-3011584 | None:intergenic | 25.0% |
| ! | GTGTTAAGAACGTTATTAAA+AGG | + | chr1_1:3011937-3011956 | None:intergenic | 25.0% |
| ! | AAACAAATTTGGATTGAGTA+AGG | - | chr1_1:3012002-3012021 | Msa0001310:intron | 25.0% |
| !! | CTAAGGGTTAATTATGTTTT+TGG | + | chr1_1:3012121-3012140 | None:intergenic | 25.0% |
| ! | ATAAAGAGCAGAAATAGAAA+AGG | + | chr1_1:3012278-3012297 | None:intergenic | 25.0% |
| !! | TGAACATACCAAGAAATTTT+CGG | + | chr1_1:3012484-3012503 | None:intergenic | 25.0% |
| ! | GTATCATATCTCAGTTATTA+TGG | + | chr1_1:3012517-3012536 | None:intergenic | 25.0% |
| ! | TCACAAATATAAGCACTTAA+GGG | + | chr1_1:3012580-3012599 | None:intergenic | 25.0% |
| ! | TTCACAAATATAAGCACTTA+AGG | + | chr1_1:3012581-3012600 | None:intergenic | 25.0% |
| !! | GTGCTTATATTTGTGAATTT+TGG | - | chr1_1:3012584-3012603 | Msa0001310:intron | 25.0% |
| !!! | TTATATTTGTGAATTTTGGC+AGG | - | chr1_1:3012588-3012607 | Msa0001310:intron | 25.0% |
| ! | AGAAGCAAACTTATTTAATG+TGG | + | chr1_1:3012831-3012850 | None:intergenic | 25.0% |
| ! | ATCATGGTTGTATAATGTAT+TGG | - | chr1_1:3012904-3012923 | Msa0001310:CDS | 25.0% |
| AGTAACGTTTAATCGTGTTA+AGG | + | chr1_1:3010140-3010159 | None:intergenic | 30.0% | |
| ! | TAATTGGTCTCATTACAAGA+AGG | - | chr1_1:3010290-3010309 | Msa0001310:CDS | 30.0% |
| CTTGTTCATATTTCCATTTG+TGG | - | chr1_1:3010370-3010389 | Msa0001310:CDS | 30.0% | |
| CAATTATGTCTAACAAAAGG+GGG | + | chr1_1:3010445-3010464 | None:intergenic | 30.0% | |
| CTACATAGACTGAAATATTC+CGG | - | chr1_1:3010772-3010791 | Msa0001310:intron | 30.0% | |
| ! | CAATTGCAATCTAAAACCAT+GGG | - | chr1_1:3010843-3010862 | Msa0001310:intron | 30.0% |
| AATAATCTCATAAATGCCCA+TGG | + | chr1_1:3010862-3010881 | None:intergenic | 30.0% | |
| TGGGCATTTATGAGATTATT+AGG | - | chr1_1:3010862-3010881 | Msa0001310:intron | 30.0% | |
| TTATGAGATTATTAGGAGTC+TGG | - | chr1_1:3010869-3010888 | Msa0001310:intron | 30.0% | |
| !! | TTTGCTGTGACTTGTTATAT+AGG | - | chr1_1:3010982-3011001 | Msa0001310:intron | 30.0% |
| GAAACAGTTCGATATATGTT+TGG | + | chr1_1:3011041-3011060 | None:intergenic | 30.0% | |
| AAAGGAATTATCTTCGCATT+TGG | + | chr1_1:3011187-3011206 | None:intergenic | 30.0% | |
| CATCAAATATTAAGCTGTCT+TGG | - | chr1_1:3011355-3011374 | Msa0001310:intron | 30.0% | |
| GAAAATACTTCTCTCTCTAA+AGG | + | chr1_1:3011489-3011508 | None:intergenic | 30.0% | |
| !!! | TGTTTTTGGTCCCTATAAAA+TGG | - | chr1_1:3011606-3011625 | Msa0001310:intron | 30.0% |
| ! | TAGAAGGTCACCATTTTATA+GGG | + | chr1_1:3011619-3011638 | None:intergenic | 30.0% |
| ! | TTAGAAGGTCACCATTTTAT+AGG | + | chr1_1:3011620-3011639 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTAGA+AGG | + | chr1_1:3011635-3011654 | None:intergenic | 30.0% | |
| ! | CAAGTTTAGAACACTATGAA+AGG | - | chr1_1:3011775-3011794 | Msa0001310:intron | 30.0% |
| !!! | TTTTGCGATATTTTTTTCGG+AGG | - | chr1_1:3011910-3011929 | Msa0001310:intron | 30.0% |
| !!! | TGAGTGCAGAAATTTTTTGT+AGG | - | chr1_1:3012033-3012052 | Msa0001310:intron | 30.0% |
| !!! | GAGTGCAGAAATTTTTTGTA+GGG | - | chr1_1:3012034-3012053 | Msa0001310:intron | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | - | chr1_1:3012078-3012097 | Msa0001310:intron | 30.0% | |
| AAAAGTAATCACCCTTGTAA+TGG | + | chr1_1:3012227-3012246 | None:intergenic | 30.0% | |
| GCAATTTCAGTTTATATGAG+AGG | - | chr1_1:3012327-3012346 | Msa0001310:intron | 30.0% | |
| ! | TATAATGTATTGGTGATCTG+TGG | - | chr1_1:3012914-3012933 | Msa0001310:CDS | 30.0% |
| CATAATGTTCTGTAAAATCC+AGG | - | chr1_1:3012940-3012959 | Msa0001310:exon | 30.0% | |
| !!! | ACCTTTTTTTTTCGACAACA+TGG | - | chr1_1:3012983-3013002 | Msa0001310:five_prime_UTR | 30.0% |
| ACCATGTTGTCGAAAAAAAA+AGG | + | chr1_1:3012987-3013006 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTCGACAACATGGT+TGG | - | chr1_1:3012987-3013006 | Msa0001310:five_prime_UTR | 30.0% |
| !! | GGGTTAGTTGAAGTCAAATA+TGG | + | chr1_1:3009883-3009902 | None:intergenic | 35.0% |
| GTCATCGGATTTAGGTATTA+CGG | - | chr1_1:3009958-3009977 | Msa0001310:exon | 35.0% | |
| TCATGGTATTCAGTACAAAG+TGG | - | chr1_1:3010236-3010255 | Msa0001310:intron | 35.0% | |
| ! | GAACAATTGGTTGATTCTTC+AGG | - | chr1_1:3010336-3010355 | Msa0001310:CDS | 35.0% |
| TCTGCATTCAAGTCATAATC+TGG | + | chr1_1:3010491-3010510 | None:intergenic | 35.0% | |
| ATGCAGATGAAGAAAAGAAG+TGG | - | chr1_1:3010504-3010523 | Msa0001310:intron | 35.0% | |
| TTAAAACCTTAGAAGAGCAG+TGG | + | chr1_1:3010630-3010649 | None:intergenic | 35.0% | |
| TTTGATGTTGTAGAGAGTTG+TGG | - | chr1_1:3010656-3010675 | Msa0001310:intron | 35.0% | |
| ! | AAAATTCTCTACTTGGTGAC+CGG | + | chr1_1:3010794-3010813 | None:intergenic | 35.0% |
| ! | GCAATTGCAATCTAAAACCA+TGG | - | chr1_1:3010842-3010861 | Msa0001310:intron | 35.0% |
| !! | CTGTGACTTGTTATATAGGT+GGG | - | chr1_1:3010986-3011005 | Msa0001310:intron | 35.0% |
| TGTATATTAAGCTGTCTCTG+TGG | - | chr1_1:3011305-3011324 | Msa0001310:intron | 35.0% | |
| AAACATGGCTCAGTTGAATA+TGG | + | chr1_1:3011403-3011422 | None:intergenic | 35.0% | |
| ! | TTACAAGGTCGCAATTTTGT+AGG | - | chr1_1:3012093-3012112 | Msa0001310:intron | 35.0% |
| ! | TACAAGGTCGCAATTTTGTA+GGG | - | chr1_1:3012094-3012113 | Msa0001310:intron | 35.0% |
| ! | AGCAAGAGGCATAAAACTAA+GGG | + | chr1_1:3012137-3012156 | None:intergenic | 35.0% |
| ! | AAGCAAGAGGCATAAAACTA+AGG | + | chr1_1:3012138-3012157 | None:intergenic | 35.0% |
| AGAGCAGAAATAGAAAAGGA+AGG | + | chr1_1:3012274-3012293 | None:intergenic | 35.0% | |
| CAGTTTATATGAGAGGTTAG+TGG | - | chr1_1:3012334-3012353 | Msa0001310:intron | 35.0% | |
| TCTCTTAGACACGAAATACA+TGG | + | chr1_1:3012381-3012400 | None:intergenic | 35.0% | |
| TATAAGCACTTAAGGGTTAC+AGG | + | chr1_1:3012573-3012592 | None:intergenic | 35.0% | |
| ACAGCAAGATCTGCTAAATT+AGG | + | chr1_1:3012624-3012643 | None:intergenic | 35.0% | |
| TTCTACTTATGCACTCATTC+TGG | + | chr1_1:3012757-3012776 | None:intergenic | 35.0% | |
| TCTAAGCGAGTTTCAACTTA+TGG | - | chr1_1:3012781-3012800 | Msa0001310:CDS | 35.0% | |
| CGAGTTTCAACTTATGGATA+AGG | - | chr1_1:3012787-3012806 | Msa0001310:CDS | 35.0% | |
| ATTTCCATCGCGATTGTTGT+CGG | - | chr1_1:3009743-3009762 | Msa0001310:three_prime_UTR | 40.0% | |
| ! | AGCGATCAACGAGATTTTGA+GGG | + | chr1_1:3009903-3009922 | None:intergenic | 40.0% |
| CCTTTAACCTTGTTGCAGAA+GGG | + | chr1_1:3010093-3010112 | None:intergenic | 40.0% | |
| ACCTTTAACCTTGTTGCAGA+AGG | + | chr1_1:3010094-3010113 | None:intergenic | 40.0% | |
| TGATAATCTAGAAACGCTGG+AGG | + | chr1_1:3010219-3010238 | None:intergenic | 40.0% | |
| CCATGATAATCTAGAAACGC+TGG | + | chr1_1:3010222-3010241 | None:intergenic | 40.0% | |
| ! | CCAGCGTTTCTAGATTATCA+TGG | - | chr1_1:3010219-3010238 | Msa0001310:intron | 40.0% |
| TGGTATTCAGTACAAAGTGG+TGG | - | chr1_1:3010239-3010258 | Msa0001310:intron | 40.0% | |
| TCACCATCAACAGTGACAAT+AGG | + | chr1_1:3010318-3010337 | None:intergenic | 40.0% | |
| !! | CACTGTTGATGGTGAACAAT+TGG | - | chr1_1:3010323-3010342 | Msa0001310:CDS | 40.0% |
| !! | GCTGTGACTTGTTATATAGG+TGG | - | chr1_1:3010985-3011004 | Msa0001310:intron | 40.0% |
| TAGGTGGGTAGATAATCACT+TGG | - | chr1_1:3011001-3011020 | Msa0001310:intron | 40.0% | |
| TCGCATTTGGAAAATGACAG+AGG | + | chr1_1:3011174-3011193 | None:intergenic | 40.0% | |
| !! | TTTTGAAAGGATACCAGTCG+AGG | - | chr1_1:3011436-3011455 | Msa0001310:intron | 40.0% |
| TTTGAAAGGATACCAGTCGA+GGG | - | chr1_1:3011437-3011456 | Msa0001310:intron | 40.0% | |
| AAAAGCAAGAACTTGGAGTG+AGG | + | chr1_1:3011539-3011558 | None:intergenic | 40.0% | |
| GAGGATGAAAAGCAAGAACT+TGG | + | chr1_1:3011546-3011565 | None:intergenic | 40.0% | |
| AACTGAGTACGAAAAGCAAG+AGG | + | chr1_1:3012151-3012170 | None:intergenic | 40.0% | |
| TCCTGAAGTCTATCATGCTA+TGG | - | chr1_1:3012297-3012316 | Msa0001310:intron | 40.0% | |
| TCCATAGCATGATAGACTTC+AGG | + | chr1_1:3012301-3012320 | None:intergenic | 40.0% | |
| TCTATCATGCTATGGAGTGT+AGG | - | chr1_1:3012305-3012324 | Msa0001310:intron | 40.0% | |
| TTGAAGGGCCGAAAATTTCT+TGG | - | chr1_1:3012473-3012492 | Msa0001310:CDS | 40.0% | |
| !! | GTGAATTTTGGCAGGTGATT+TGG | - | chr1_1:3012596-3012615 | Msa0001310:intron | 40.0% |
| ! | TTAGCAGATCTTGCTGTCTT+TGG | - | chr1_1:3012627-3012646 | Msa0001310:intron | 40.0% |
| AAGATATGGTAGAGCACACA+AGG | - | chr1_1:3012685-3012704 | Msa0001310:CDS | 40.0% | |
| !!! | TGGGAATTGGTTTTCTGAGA+TGG | - | chr1_1:3012710-3012729 | Msa0001310:CDS | 40.0% |
| ! | TCTGAGATGGAAAATGCAGT+TGG | - | chr1_1:3012723-3012742 | Msa0001310:CDS | 40.0% |
| GGTTGGATACATACAAGTGT+AGG | - | chr1_1:3013004-3013023 | Msa0001310:five_prime_UTR | 40.0% | |
| GATAAAACCCTAAACCCTGC+CGG | - | chr1_1:3009716-3009735 | Msa0001310:three_prime_UTR | 45.0% | |
| AATCGCGATGGAAATGGTTC+CGG | + | chr1_1:3009738-3009757 | None:intergenic | 45.0% | |
| GACAACAATCGCGATGGAAA+TGG | + | chr1_1:3009744-3009763 | None:intergenic | 45.0% | |
| ACTGAGCTAGCAAGAATGAG+AGG | - | chr1_1:3009772-3009791 | Msa0001310:three_prime_UTR | 45.0% | |
| GCAAGAATGAGAGGACTCAA+CGG | - | chr1_1:3009781-3009800 | Msa0001310:three_prime_UTR | 45.0% | |
| ! | GAGCGATCAACGAGATTTTG+AGG | + | chr1_1:3009904-3009923 | None:intergenic | 45.0% |
| ! | AACAGAGGGAGTTGATTGGT+TGG | + | chr1_1:3009926-3009945 | None:intergenic | 45.0% |
| ! | GAACAACAGAGGGAGTTGAT+TGG | + | chr1_1:3009930-3009949 | None:intergenic | 45.0% |
| CAACAAGACCTCAAAGCAAG+AGG | - | chr1_1:3010009-3010028 | Msa0001310:CDS | 45.0% | |
| GTTCTGATCCTCTTGCTTTG+AGG | + | chr1_1:3010020-3010039 | None:intergenic | 45.0% | |
| CCCTTCTGCAACAAGGTTAA+AGG | - | chr1_1:3010090-3010109 | Msa0001310:CDS | 45.0% | |
| GTGCCTATTGTCACTGTTGA+TGG | - | chr1_1:3010312-3010331 | Msa0001310:CDS | 45.0% | |
| CTTGTACCACTGCTCTTCTA+AGG | - | chr1_1:3010621-3010640 | Msa0001310:intron | 45.0% | |
| AGGAAGGCAGCAGACAATAA+GGG | + | chr1_1:3012258-3012277 | None:intergenic | 45.0% | |
| AAGGAAGGCAGCAGACAATA+AGG | + | chr1_1:3012259-3012278 | None:intergenic | 45.0% | |
| GAGAGGTTAGTGGCTAAGTA+TGG | - | chr1_1:3012344-3012363 | Msa0001310:intron | 45.0% | |
| AGGTTAGTGGCTAAGTATGG+TGG | - | chr1_1:3012347-3012366 | Msa0001310:intron | 45.0% | |
| GGTTAGTGGCTAAGTATGGT+GGG | - | chr1_1:3012348-3012367 | Msa0001310:intron | 45.0% | |
| GTTAGTGGCTAAGTATGGTG+GGG | - | chr1_1:3012349-3012368 | Msa0001310:intron | 45.0% | |
| CAATATCACTGATGAGCGTG+AGG | - | chr1_1:3012415-3012434 | Msa0001310:CDS | 45.0% | |
| !! | ACAGTGGGTTGAAGCTTTGA+AGG | - | chr1_1:3012457-3012476 | Msa0001310:CDS | 45.0% |
| !! | CAGTGGGTTGAAGCTTTGAA+GGG | - | chr1_1:3012458-3012477 | Msa0001310:CDS | 45.0% |
| TTAAGGGTTACAGGTCTTCG+AGG | + | chr1_1:3012564-3012583 | None:intergenic | 45.0% | |
| ! | TATCTTGACCTGACTTGAGG+TGG | + | chr1_1:3012671-3012690 | None:intergenic | 45.0% |
| ! | CCATATCTTGACCTGACTTG+AGG | + | chr1_1:3012674-3012693 | None:intergenic | 45.0% |
| CCTCAAGTCAGGTCAAGATA+TGG | - | chr1_1:3012671-3012690 | Msa0001310:CDS | 45.0% | |
| ATGGTAGAGCACACAAGGAT+TGG | - | chr1_1:3012690-3012709 | Msa0001310:CDS | 45.0% | |
| TGGTAGAGCACACAAGGATT+GGG | - | chr1_1:3012691-3012710 | Msa0001310:CDS | 45.0% | |
| AGCACACAAGGATTGGGAAT+TGG | - | chr1_1:3012697-3012716 | Msa0001310:CDS | 45.0% | |
| GATGGAAAATGCAGTTGGAC+AGG | - | chr1_1:3012728-3012747 | Msa0001310:CDS | 45.0% | |
| AATGGTTCCGGCAGGGTTTA+GGG | + | chr1_1:3009726-3009745 | None:intergenic | 50.0% | |
| AAATGGTTCCGGCAGGGTTT+AGG | + | chr1_1:3009727-3009746 | None:intergenic | 50.0% | |
| ATCACCGACAACAATCGCGA+TGG | + | chr1_1:3009750-3009769 | None:intergenic | 50.0% | |
| CTTAAGAGCCAACTCCACTG+CGG | - | chr1_1:3009825-3009844 | Msa0001310:three_prime_UTR | 50.0% | |
| AAATATGGAGCTGCTCGAGG+CGG | + | chr1_1:3009868-3009887 | None:intergenic | 50.0% | |
| GTCAAATATGGAGCTGCTCG+AGG | + | chr1_1:3009871-3009890 | None:intergenic | 50.0% | |
| AGCTTGTCCCTTCTGCAACA+AGG | - | chr1_1:3010083-3010102 | Msa0001310:CDS | 50.0% | |
| AGAAAAGAAGTGGCGCGAGT+AGG | - | chr1_1:3010514-3010533 | Msa0001310:intron | 50.0% | |
| AAATACCTCTCTCCCTCGAC+TGG | + | chr1_1:3011452-3011471 | None:intergenic | 50.0% | |
| ! | GATGAGCGTGAGGCTTTGTA+TGG | - | chr1_1:3012425-3012444 | Msa0001310:CDS | 50.0% |
| TGTATGGAGCTGCTGAACAG+TGG | - | chr1_1:3012441-3012460 | Msa0001310:CDS | 50.0% | |
| GTATGGAGCTGCTGAACAGT+GGG | - | chr1_1:3012442-3012461 | Msa0001310:CDS | 50.0% | |
| CGATGGAAATGGTTCCGGCA+GGG | + | chr1_1:3009733-3009752 | None:intergenic | 55.0% | |
| ! | GGCTCTTAAGGCTCTGGCAA+TGG | + | chr1_1:3009815-3009834 | None:intergenic | 55.0% |
| ! | GGAGTTGGCTCTTAAGGCTC+TGG | + | chr1_1:3009821-3009840 | None:intergenic | 55.0% |
| ! | CGCAGTGGAGTTGGCTCTTA+AGG | + | chr1_1:3009827-3009846 | None:intergenic | 55.0% |
| ACGTCGCTGCGAACAACAGA+GGG | + | chr1_1:3009940-3009959 | None:intergenic | 55.0% | |
| GTTGTTCGCAGCGACGTCAT+CGG | - | chr1_1:3009943-3009962 | Msa0001310:three_prime_UTR | 55.0% | |
| GCAGCGACGTCATCGGATTT+AGG | - | chr1_1:3009950-3009969 | Msa0001310:three_prime_UTR | 55.0% | |
| !! | GCTTTGAGGTCTTGTTGCGC+CGG | + | chr1_1:3010006-3010025 | None:intergenic | 55.0% |
| ! | CCTGACTTGAGGTGGCGAAT+GGG | + | chr1_1:3012663-3012682 | None:intergenic | 55.0% |
| ! | ACCTGACTTGAGGTGGCGAA+TGG | + | chr1_1:3012664-3012683 | None:intergenic | 55.0% |
| GCGATGGAAATGGTTCCGGC+AGG | + | chr1_1:3009734-3009753 | None:intergenic | 60.0% | |
| GACGTCGCTGCGAACAACAG+AGG | + | chr1_1:3009941-3009960 | None:intergenic | 60.0% | |
| ! | GTCTTGTTGCGCCGGAGATG+TGG | + | chr1_1:3009998-3010017 | None:intergenic | 60.0% |
| GGATACCAGTCGAGGGAGAG+AGG | - | chr1_1:3011444-3011463 | Msa0001310:intron | 60.0% | |
| CCCATTCGCCACCTCAAGTC+AGG | - | chr1_1:3012660-3012679 | Msa0001310:CDS | 60.0% | |
| GGTGGAAGCCGCAGTGGAGT+TGG | + | chr1_1:3009836-3009855 | None:intergenic | 65.0% | |
| GAGGAAGGTGGAAGCCGCAG+TGG | + | chr1_1:3009842-3009861 | None:intergenic | 65.0% | |
| ATGGAGCTGCTCGAGGCGGT+CGG | + | chr1_1:3009864-3009883 | None:intergenic | 65.0% | |
| TGCCGCCACTGCCACATCTC+CGG | - | chr1_1:3009984-3010003 | Msa0001310:CDS | 65.0% | |
| TTGCGCCGGAGATGTGGCAG+TGG | + | chr1_1:3009992-3010011 | None:intergenic | 65.0% | |
| TCGAGGCGGTCGGAGGAAGG+TGG | + | chr1_1:3009854-3009873 | None:intergenic | 70.0% | |
| TGCTCGAGGCGGTCGGAGGA+AGG | + | chr1_1:3009857-3009876 | None:intergenic | 70.0% | |
| CGCCGGAGATGTGGCAGTGG+CGG | + | chr1_1:3009989-3010008 | None:intergenic | 70.0% | |
| GAGCTGCTCGAGGCGGTCGG+AGG | + | chr1_1:3009861-3009880 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3009710 | 3013034 | 3009710 | ID=Msa0001310;Name=Msa0001310 |
| chr1_1 | mRNA | 3009710 | 3013034 | 3009710 | ID=Msa0001310-mRNA-1;Parent=Msa0001310;Name=Msa0001310-mRNA-1;_AED=0.09;_eAED=0.09;_QI=77|1|1|1|1|1|6|264|319 |
| chr1_1 | exon | 3009710 | 3010134 | 3009710 | ID=Msa0001310-mRNA-1:exon:718;Parent=Msa0001310-mRNA-1 |
| chr1_1 | exon | 3010250 | 3010417 | 3010250 | ID=Msa0001310-mRNA-1:exon:717;Parent=Msa0001310-mRNA-1 |
| chr1_1 | exon | 3011646 | 3011740 | 3011646 | ID=Msa0001310-mRNA-1:exon:716;Parent=Msa0001310-mRNA-1 |
| chr1_1 | exon | 3012213 | 3012288 | 3012213 | ID=Msa0001310-mRNA-1:exon:715;Parent=Msa0001310-mRNA-1 |
| chr1_1 | exon | 3012387 | 3012521 | 3012387 | ID=Msa0001310-mRNA-1:exon:714;Parent=Msa0001310-mRNA-1 |
| chr1_1 | exon | 3012633 | 3013034 | 3012633 | ID=Msa0001310-mRNA-1:exon:713;Parent=Msa0001310-mRNA-1 |
| chr1_1 | five_prime_UTR | 3012958 | 3013034 | 3012958 | ID=Msa0001310-mRNA-1:five_prime_utr;Parent=Msa0001310-mRNA-1 |
| chr1_1 | CDS | 3012633 | 3012957 | 3012633 | ID=Msa0001310-mRNA-1:cds;Parent=Msa0001310-mRNA-1 |
| chr1_1 | CDS | 3012387 | 3012521 | 3012387 | ID=Msa0001310-mRNA-1:cds;Parent=Msa0001310-mRNA-1 |
| chr1_1 | CDS | 3012213 | 3012288 | 3012213 | ID=Msa0001310-mRNA-1:cds;Parent=Msa0001310-mRNA-1 |
| chr1_1 | CDS | 3011646 | 3011740 | 3011646 | ID=Msa0001310-mRNA-1:cds;Parent=Msa0001310-mRNA-1 |
| chr1_1 | CDS | 3010250 | 3010417 | 3010250 | ID=Msa0001310-mRNA-1:cds;Parent=Msa0001310-mRNA-1 |
| chr1_1 | CDS | 3009974 | 3010134 | 3009974 | ID=Msa0001310-mRNA-1:cds;Parent=Msa0001310-mRNA-1 |
| chr1_1 | three_prime_UTR | 3009710 | 3009973 | 3009710 | ID=Msa0001310-mRNA-1:three_prime_utr;Parent=Msa0001310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
