AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0012850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012850 MtrunA17_Chr5g0404241 91.860 430 8 5 1 412 1 421 0.0 752
Msa0012850 MtrunA17_Chr6g0459721 90.465 430 8 6 1 412 1 415 0.0 737
Msa0012850 MtrunA17_Chr1g0161851 83.495 412 18 4 1 412 1 362 0.0 668
Msa0012850 MtrunA17_Chr8g0372901 23.684 266 193 5 147 412 139 394 6.91e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0012850 AT1G30960.1 59.193 446 136 8 4 412 1 437 4.79e-161 460

Find 131 sgRNAs with CRISPR-Local

Find 535 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGTGGTGGTGGTGATTT+TGG 0.057748 1_1:+19585554 None:intergenic
TTTAGGCGTTTCATGATATC+TGG 0.252865 1_1:-19579644 Msa0012850:intron
CGAGCCTTGGCATCCTTATA+AGG 0.255466 1_1:+19581533 None:intergenic
ACTTCCTCGGTCATGGTAAA+TGG 0.262332 1_1:+19579288 None:intergenic
GGCATTTGGTTGTATGAAAA+TGG 0.267376 1_1:-19578117 Msa0012850:three_prime_UTR
TCGTCGTTGTTGTTGAGAAT+TGG 0.308102 1_1:+19585426 None:intergenic
GCAAGTGCATCTAGTTCTTC+AGG 0.309721 1_1:-19578527 Msa0012850:CDS
TTGTAGTGGATTCCCTTATA+AGG 0.318675 1_1:-19581546 Msa0012850:CDS
ACACATTTATTTAGGGCATT+TGG 0.320156 1_1:-19578131 Msa0012850:three_prime_UTR
GAAGGGGAGAGTGAAGTTTA+AGG 0.327471 1_1:-19585331 Msa0012850:CDS
CACTTTCTCACTAACAAATT+AGG 0.329869 1_1:-19579025 Msa0012850:CDS
ATTAACGAGGCGAATATCTT+TGG 0.332434 1_1:-19578491 Msa0012850:three_prime_UTR
TCCGGCAATCAAATAGTAAA+AGG 0.333098 1_1:+19578268 None:intergenic
CGTCGTTGTTGTTGAGAATT+GGG 0.339743 1_1:+19585427 None:intergenic
GAAGGTAGCGTCTGAATGTT+CGG 0.345424 1_1:+19585470 None:intergenic
AGTTGCGAGATGGTTCTCTT+AGG 0.351624 1_1:-19579057 Msa0012850:CDS
GAAGAATTCGAAGATCTTCC+TGG 0.354726 1_1:-19579799 Msa0012850:CDS
GATTGTGGTGGTTGTGGTGG+TGG 0.359889 1_1:+19585545 None:intergenic
TTCTTATTCCACGTCACCTT+CGG 0.364738 1_1:+19585396 None:intergenic
CCTGTTCTCAGGCAAGGTTT+TGG 0.367068 1_1:+19578368 None:intergenic
AGATTTGACTCAGTTCTTGA+TGG 0.373919 1_1:-19579600 Msa0012850:CDS
TTTACCTAGTAATATGTCTA+TGG 0.374008 1_1:+19581450 None:intergenic
CCAAAACCTTGCCTGAGAAC+AGG 0.379764 1_1:-19578368 Msa0012850:three_prime_UTR
GAATGTTCGGGTTGAGGATC+GGG 0.385005 1_1:+19585483 None:intergenic
TGTTTGTTTAACAGGAGAAT+AGG 0.397704 1_1:-19578589 Msa0012850:intron
GGCGCTTGAGAAGGCTTTGT+TGG 0.399139 1_1:-19585283 Msa0012850:CDS
TCGGGTTGAGGATCGGGTTC+CGG 0.405609 1_1:+19585489 None:intergenic
AGCCAAGTTACTCACAATTT+GGG 0.415515 1_1:+19582583 None:intergenic
TGAATGTTCGGGTTGAGGAT+CGG 0.418854 1_1:+19585482 None:intergenic
GGGTTCCGGTGTGAGGGGTT+CGG 0.422928 1_1:+19585503 None:intergenic
CAAGTTTATCCGTCCGGTCT+CGG 0.427824 1_1:+19585370 None:intergenic
TAAAAGGCATAACAAATTGC+CGG 0.437940 1_1:+19578284 None:intergenic
AGGATCGGGTTCCGGTGTGA+GGG 0.442223 1_1:+19585497 None:intergenic
AAGGTAGCGTCTGAATGTTC+GGG 0.446165 1_1:+19585471 None:intergenic
CTATTTGATTGCCGGAGTCT+AGG 0.452398 1_1:-19578261 Msa0012850:three_prime_UTR
ATAAGTGCTATGGAAGAAAC+AGG 0.452402 1_1:-19578330 Msa0012850:three_prime_UTR
AGTGAAGTTTAAGGAGGAAG+AGG 0.453679 1_1:-19585322 Msa0012850:CDS
AAAATGGTGAGATACGAGTT+TGG 0.461973 1_1:-19578101 Msa0012850:three_prime_UTR
GCGTCTGAATGTTCGGGTTG+AGG 0.463169 1_1:+19585477 None:intergenic
GGCCAACTCAAGATTCTTGT+GGG 0.471826 1_1:-19579004 Msa0012850:CDS
GAGGATCGGGTTCCGGTGTG+AGG 0.472229 1_1:+19585496 None:intergenic
TTAAACTTCACTCTCCCCTT+CGG 0.473137 1_1:+19585333 None:intergenic
AGCACTTTCAACACGAGCCT+TGG 0.476228 1_1:+19581520 None:intergenic
GTGTAATTCACACACCCCTT+TGG 0.476630 1_1:+19578415 None:intergenic
TTTCATGATATCTGGAATGA+AGG 0.478892 1_1:-19579636 Msa0012850:CDS
TAAACCCGAGGAGGAGGAGG+AGG 0.480366 1_1:-19585247 Msa0012850:CDS
AATAGGCAGTAGAACGGCCC+TGG 0.484531 1_1:-19579320 Msa0012850:intron
TCTATGATGACCCTGTTCTC+AGG 0.485261 1_1:+19578357 None:intergenic
GAGCCTTGGCATCCTTATAA+GGG 0.485844 1_1:+19581534 None:intergenic
GACTCAGTTCTTGATGGAGC+AGG 0.486458 1_1:-19579594 Msa0012850:CDS
GTTGTTGGACCATGTACATC+AGG 0.487956 1_1:-19579229 Msa0012850:intron
CATAGATAAAATAAGTGCTA+TGG 0.488073 1_1:-19578340 Msa0012850:three_prime_UTR
CATTAGAAGTTGTGCGTGAA+AGG 0.488172 1_1:-19579251 Msa0012850:CDS
GAGTAAACCCGAGGAGGAGG+AGG 0.490946 1_1:-19585250 Msa0012850:CDS
AGACCTTACCTTTCAAATCC+AGG 0.490953 1_1:+19579781 None:intergenic
TTTCATAACTTCCTCGGTCA+TGG 0.497634 1_1:+19579281 None:intergenic
AACCTATGTTCAATATCGTA+TGG 0.502441 1_1:+19579094 None:intergenic
ATGTCCATAGACATATTACT+AGG 0.503709 1_1:-19581454 Msa0012850:intron
CACCACAACTCATGAAGTTG+TGG 0.507926 1_1:-19582627 Msa0012850:CDS
TTGAACATAGGTTGATTGAC+TGG 0.510746 1_1:-19579084 Msa0012850:CDS
TTCATGATATCTGGAATGAA+GGG 0.518749 1_1:-19579635 Msa0012850:CDS
AGTTGTGCGTGAAAGGTTGT+TGG 0.519289 1_1:-19579244 Msa0012850:CDS
GGTTGTTTATGAAAATTGAA+AGG 0.524496 1_1:-19578215 Msa0012850:three_prime_UTR
GGTAAATGGATCTTCTTCCC+AGG 0.528565 1_1:+19579302 None:intergenic
GCAGCATGTAAAATGCCAAA+GGG 0.531201 1_1:-19578430 Msa0012850:three_prime_UTR
CAAAACCTTGCCTGAGAACA+GGG 0.533313 1_1:-19578367 Msa0012850:three_prime_UTR
TGTAAAACTGATCAAGCGAA+TGG 0.536305 1_1:-19579911 Msa0012850:CDS
GCGGAAGATTGTGGTGGTTG+TGG 0.537097 1_1:+19585539 None:intergenic
GAGGAGGAAGATGAAGATGT+CGG 0.538123 1_1:-19585222 Msa0012850:CDS
AAGATCTTCCTGGATTTGAA+AGG 0.540512 1_1:-19579789 Msa0012850:intron
AGGCCAACTCAAGATTCTTG+TGG 0.543483 1_1:-19579005 Msa0012850:CDS
TCCCCACAAGAATCTTGAGT+TGG 0.544132 1_1:+19579002 None:intergenic
AAGAAACAGGTTGAGTTCGT+TGG 0.544765 1_1:-19578317 Msa0012850:three_prime_UTR
TTAAGGAGGAAGAGGAGGAG+AGG 0.547469 1_1:-19585314 Msa0012850:CDS
GAAGTTTAAGGAGGAAGAGG+AGG 0.548933 1_1:-19585319 Msa0012850:CDS
GTAAAACTGATCAAGCGAAT+GGG 0.549419 1_1:-19579910 Msa0012850:CDS
AGAGGAGGAGAGGAAAACTA+AGG 0.554259 1_1:-19585304 Msa0012850:CDS
AGGCTCGTGTTGAAAGTGCT+TGG 0.555577 1_1:-19581517 Msa0012850:CDS
GAAAACTAAGGCGCTTGAGA+AGG 0.556677 1_1:-19585292 Msa0012850:CDS
TGTGTTCGGCGATGAGCCGA+AGG 0.559448 1_1:-19585349 Msa0012850:CDS
GGGGAGAGTGAAGTTTAAGG+AGG 0.560952 1_1:-19585328 Msa0012850:CDS
AGATGTCGGTGTTGTGAATG+AGG 0.564142 1_1:-19585208 Msa0012850:CDS
CGGACGGATAAACTTGTGTT+CGG 0.565605 1_1:-19585363 Msa0012850:CDS
CGAACACAAGTTTATCCGTC+CGG 0.566071 1_1:+19585364 None:intergenic
GGGCTTGTGCTAAATTGTAG+TGG 0.569962 1_1:-19581560 Msa0012850:CDS
AAGATTCTTGTGGGGAAGCG+TGG 0.571176 1_1:-19578995 Msa0012850:CDS
GTTGAGTAAACCCGAGGAGG+AGG 0.571215 1_1:-19585253 Msa0012850:CDS
GGAATAAGAAATACCGAGAC+CGG 0.573614 1_1:-19585383 Msa0012850:CDS
AAGAAAAGCCGAAGGTGACG+TGG 0.574647 1_1:-19585404 Msa0012850:CDS
GAAGAAAGCGCGGAAGATTG+TGG 0.575424 1_1:+19585530 None:intergenic
ACCACAACTCATGAAGTTGT+GGG 0.577761 1_1:-19582626 Msa0012850:CDS
ATCATCATAGGTTGGAACAA+AGG 0.577776 1_1:-19582675 Msa0012850:intron
GACTGGAAAGAGTTGCGAGA+TGG 0.578343 1_1:-19579067 Msa0012850:CDS
TGCAGCATGTAAAATGCCAA+AGG 0.579327 1_1:-19578431 Msa0012850:three_prime_UTR
TAGAAGCTAATGAAGAGCTA+AGG 0.579922 1_1:-19578564 Msa0012850:CDS
GATGACCCTGTTCTCAGGCA+AGG 0.582636 1_1:+19578362 None:intergenic
GGATCGGGTTCCGGTGTGAG+GGG 0.585238 1_1:+19585498 None:intergenic
CAACAATTACCTGATGTACA+TGG 0.586750 1_1:+19579220 None:intergenic
CTACAATTTAGCACAAGCCC+TGG 0.589633 1_1:+19581563 None:intergenic
GAAGATTGTGGTGGTTGTGG+TGG 0.591937 1_1:+19585542 None:intergenic
TTCCATACGATATTGAACAT+AGG 0.595384 1_1:-19579096 Msa0012850:CDS
GCCCACAACTTCATGAGTTG+TGG 0.595586 1_1:+19582625 None:intergenic
GTTGTGGGCGTGTTGACTAA+AGG 0.601040 1_1:-19582611 Msa0012850:CDS
TGATCAAGCGAATGGGAGAA+CGG 0.601143 1_1:-19579903 Msa0012850:CDS
ATAGGCAGTAGAACGGCCCT+GGG 0.601733 1_1:-19579319 Msa0012850:intron
AAAATTGAGTTCCTAGACTC+CGG 0.604158 1_1:+19578250 None:intergenic
GTGTTCGGCGATGAGCCGAA+GGG 0.604636 1_1:-19585348 Msa0012850:CDS
TAAGAAATACCGAGACCGGA+CGG 0.606280 1_1:-19585379 Msa0012850:CDS
CTCCGCCGAACCCCTCACAC+CGG 0.606587 1_1:-19585508 Msa0012850:CDS
GTAAATGGATCTTCTTCCCA+GGG 0.615060 1_1:+19579303 None:intergenic
GTTCGTTGGTGATCTCATGC+CGG 0.617423 1_1:-19578303 Msa0012850:three_prime_UTR
TTCCGGTGTGAGGGGTTCGG+CGG 0.620498 1_1:+19585506 None:intergenic
TTATGCAATAGGCAGTAGAA+CGG 0.620601 1_1:-19579326 Msa0012850:intron
TTCGTAGTGAAAACTATCGA+AGG 0.631982 1_1:+19585452 None:intergenic
ATAGGTTGGAACAAAGGTGG+CGG 0.633224 1_1:-19582669 Msa0012850:intron
TCATGATATCTGGAATGAAG+GGG 0.634102 1_1:-19579634 Msa0012850:CDS
CAACGACGAAGAAAAGCCGA+AGG 0.639930 1_1:-19585412 Msa0012850:CDS
ATCATAGGTTGGAACAAAGG+TGG 0.643299 1_1:-19582672 Msa0012850:intron
TGTTCGGCGATGAGCCGAAG+GGG 0.649435 1_1:-19585347 Msa0012850:CDS
TGCGTTGAGTAAACCCGAGG+AGG 0.651939 1_1:-19585256 Msa0012850:CDS
ATTCCCTTATAAGGATGCCA+AGG 0.653370 1_1:-19581537 Msa0012850:CDS
CATGATATCTGGAATGAAGG+GGG 0.674998 1_1:-19579633 Msa0012850:CDS
GCCAACTCAAGATTCTTGTG+GGG 0.679081 1_1:-19579003 Msa0012850:CDS
AGCTGCGTTGAGTAAACCCG+AGG 0.680436 1_1:-19585259 Msa0012850:CDS
CAGCATGTAAAATGCCAAAG+GGG 0.686050 1_1:-19578429 Msa0012850:three_prime_UTR
AGATCCATTTACCATGACCG+AGG 0.703637 1_1:-19579292 Msa0012850:CDS
GAAAGCGCGGAAGATTGTGG+TGG 0.712487 1_1:+19585533 None:intergenic
GTTCGGCGGAGAAGAAAGCG+CGG 0.728248 1_1:+19585520 None:intergenic
ATGCTGCAGAACATGGTGTG+TGG 0.738758 1_1:+19578446 None:intergenic
TGTCGGTGTTGTGAATGAGG+AGG 0.748891 1_1:-19585205 Msa0012850:CDS
TTAAGCTCAAATGATTAACG+AGG 0.772446 1_1:-19578504 Msa0012850:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTCTCAAATAATAAAT+AGG + chr1_1:19580247-19580266 None:intergenic 10.0%
!! TAAACTAATAATAATGTAAA+TGG + chr1_1:19580912-19580931 None:intergenic 10.0%
!! AATAAAATTAAAACAAGTTT+AGG - chr1_1:19582444-19582463 Msa0012850:intron 10.0%
!! ATAAAATTAAAACAAGTTTA+GGG - chr1_1:19582445-19582464 Msa0012850:intron 10.0%
!! AATGTATAAAATTAAAAGAA+TGG + chr1_1:19583662-19583681 None:intergenic 10.0%
!! TATAAAAAACACATTTATTT+AGG - chr1_1:19585527-19585546 Msa0012850:CDS 10.0%
!! ATAAAAAACACATTTATTTA+GGG - chr1_1:19585528-19585547 Msa0012850:CDS 10.0%
!!! TAATTTTTTGTTTATATTCG+AGG - chr1_1:19579722-19579741 Msa0012850:intron 15.0%
!! CAGAAATAAAAAATCATATT+TGG + chr1_1:19580967-19580986 None:intergenic 15.0%
!!! TTGTTTTTATATGCTTAATT+TGG - chr1_1:19581658-19581677 Msa0012850:intron 15.0%
!! CTTAAGAAATAAAAATAATG+AGG - chr1_1:19582472-19582491 Msa0012850:intron 15.0%
!! TGTATACAAATTATAGTTAT+TGG - chr1_1:19584127-19584146 Msa0012850:intron 15.0%
!!! ATTTCTCTTATTGTTTTTCT+AGG + chr1_1:19578858-19578877 None:intergenic 20.0%
!! TTTAGAGATTATTATTGAGT+TGG - chr1_1:19578890-19578909 Msa0012850:intron 20.0%
!! GGTTAAAACTTAAACAAAAT+GGG + chr1_1:19579090-19579109 None:intergenic 20.0%
!! AGGTTAAAACTTAAACAAAA+TGG + chr1_1:19579091-19579110 None:intergenic 20.0%
!! TCATTTACTCAAACTATTAT+CGG + chr1_1:19579436-19579455 None:intergenic 20.0%
!! CTAGAGGTAATAATTATTTA+GGG - chr1_1:19579745-19579764 Msa0012850:intron 20.0%
!! TAGAGGTAATAATTATTTAG+GGG - chr1_1:19579746-19579765 Msa0012850:intron 20.0%
!! TTACTTAAATTAGTTACCTA+AGG + chr1_1:19579777-19579796 None:intergenic 20.0%
!! TTAGGTAACTAATTTAAGTA+AGG - chr1_1:19579776-19579795 Msa0012850:intron 20.0%
!! TAGGTAACTAATTTAAGTAA+GGG - chr1_1:19579777-19579796 Msa0012850:intron 20.0%
!!! GGATTTAGAATAAACAAATT+TGG + chr1_1:19580226-19580245 None:intergenic 20.0%
!! TGACTGATAATTTCTTTAAT+AGG - chr1_1:19580682-19580701 Msa0012850:intron 20.0%
!! GACTGATAATTTCTTTAATA+GGG - chr1_1:19580683-19580702 Msa0012850:intron 20.0%
!! TATAACATGATAATATTGAG+TGG + chr1_1:19580805-19580824 None:intergenic 20.0%
!!! TTTAAATTTCAATCAGCTTT+TGG - chr1_1:19580928-19580947 Msa0012850:intron 20.0%
!!! TATTTCTGATTTATCATCAT+AGG - chr1_1:19580979-19580998 Msa0012850:intron 20.0%
!!! TTGTAATTGTATTTTGCAAT+TGG + chr1_1:19581553-19581572 None:intergenic 20.0%
!! ATTTGAATGAGTCAAATTAT+TGG - chr1_1:19581681-19581700 Msa0012850:intron 20.0%
!! TTTGAATGAGTCAAATTATT+GGG - chr1_1:19581682-19581701 Msa0012850:intron 20.0%
!! AGTATATTTACTAAAACCTT+TGG - chr1_1:19581946-19581965 Msa0012850:intron 20.0%
!!! TATAGTCTTATTTAATCCAA+CGG - chr1_1:19582949-19582968 Msa0012850:intron 20.0%
!! GATAAATAATAGAGAAAAGT+TGG + chr1_1:19583235-19583254 None:intergenic 20.0%
!!! TGTTGGCTATTTTATTATTT+AGG - chr1_1:19584005-19584024 Msa0012850:intron 20.0%
!! AACTGTGATTCTATATTTAA+AGG + chr1_1:19584208-19584227 None:intergenic 20.0%
!!! TTAATTGTTTGTTATGCAAT+AGG - chr1_1:19584329-19584348 Msa0012850:intron 20.0%
!! GATTAGATTATAGTGTTTAT+TGG - chr1_1:19584522-19584541 Msa0012850:intron 20.0%
!!! AATAATGTCATATCTAAAAC+AGG + chr1_1:19584760-19584779 None:intergenic 20.0%
!!! TGTTTTAGATATGACATTAT+TGG - chr1_1:19584759-19584778 Msa0012850:intron 20.0%
!! TTGAGTTTAGACATAAAATA+TGG - chr1_1:19584793-19584812 Msa0012850:intron 20.0%
!! TGAGTTTAGACATAAAATAT+GGG - chr1_1:19584794-19584813 Msa0012850:intron 20.0%
!! TCGATTAATTAAAGTTTCTA+TGG - chr1_1:19584956-19584975 Msa0012850:intron 20.0%
!! CGATTAATTAAAGTTTCTAT+GGG - chr1_1:19584957-19584976 Msa0012850:intron 20.0%
!! GATTAATTAAAGTTTCTATG+GGG - chr1_1:19584958-19584977 Msa0012850:intron 20.0%
!!! CTCAATTTTCTTTAAGTTTA+TGG - chr1_1:19585430-19585449 Msa0012850:CDS 20.0%
!!! AGTGTTTTTGAAGATTCTTA+AGG + chr1_1:19578073-19578092 None:intergenic 25.0%
! ATCTTCTCTCACTAATTATA+TGG - chr1_1:19578533-19578552 Msa0012850:CDS 25.0%
! GATATGTAGATTCTGTTATA+AGG - chr1_1:19578782-19578801 Msa0012850:intron 25.0%
! TGGTTTATGAAAGAACATTA+TGG - chr1_1:19578921-19578940 Msa0012850:intron 25.0%
! TAAAATCCACTCCAAAAATT+TGG + chr1_1:19579506-19579525 None:intergenic 25.0%
! AATGACTAAGTTTCTTAGTA+AGG + chr1_1:19579570-19579589 None:intergenic 25.0%
! GCTAGAGGTAATAATTATTT+AGG - chr1_1:19579744-19579763 Msa0012850:intron 25.0%
! AGAGGTAATAATTATTTAGG+GGG - chr1_1:19579747-19579766 Msa0012850:intron 25.0%
!!! TTCTAGCTTCTAAATGAAAA+CGG + chr1_1:19579849-19579868 None:intergenic 25.0%
! TTTCATTTAGAAGCTAGAAT+TGG - chr1_1:19579850-19579869 Msa0012850:CDS 25.0%
! TTCATTTAGAAGCTAGAATT+GGG - chr1_1:19579851-19579870 Msa0012850:CDS 25.0%
!!! GATTTTATTTCCATCTTGTA+AGG - chr1_1:19580771-19580790 Msa0012850:intron 25.0%
!!! TTTATTTTGTCGTGTGTAAA+AGG - chr1_1:19581112-19581131 Msa0012850:intron 25.0%
!!! TTATTTTGTCGTGTGTAAAA+GGG - chr1_1:19581113-19581132 Msa0012850:intron 25.0%
! AAGTAGTAGATGCAATAAAT+TGG - chr1_1:19581179-19581198 Msa0012850:intron 25.0%
! CTATATCAATTATGTTTGAC+TGG - chr1_1:19581304-19581323 Msa0012850:intron 25.0%
! ACAAAAAAACCATGTTTCAT+TGG + chr1_1:19581388-19581407 None:intergenic 25.0%
! TGATTTATTTACTTGCTTCT+AGG + chr1_1:19581580-19581599 None:intergenic 25.0%
! TGATTTATTTACTTGCTTCT+AGG + chr1_1:19581580-19581599 None:intergenic 25.0%
! ATAATGAAACAGTAAGATCA+TGG + chr1_1:19581988-19582007 None:intergenic 25.0%
! ATCTTACTGTTTCATTATGT+TGG - chr1_1:19581990-19582009 Msa0012850:intron 25.0%
!!! TTCATTATGTTGGTTTATGA+TGG - chr1_1:19582000-19582019 Msa0012850:intron 25.0%
!!! TCATTATGTTGGTTTATGAT+GGG - chr1_1:19582001-19582020 Msa0012850:intron 25.0%
! TTTACCTAGTAATATGTCTA+TGG + chr1_1:19582219-19582238 None:intergenic 25.0%
!!! AAAGTGTTTTGTTTAATCTG+AGG - chr1_1:19582236-19582255 Msa0012850:intron 25.0%
! TATTTAATCCAATGGTATAG+TGG + chr1_1:19582297-19582316 None:intergenic 25.0%
!!! TATGGTCTTATTTAATCCAA+TGG + chr1_1:19582305-19582324 None:intergenic 25.0%
! AAATAATGAGGAATGAAAAG+AGG - chr1_1:19582484-19582503 Msa0012850:intron 25.0%
! AATAATGAGGAATGAAAAGA+GGG - chr1_1:19582485-19582504 Msa0012850:intron 25.0%
! TAACAAATGAATTCAGTTGT+AGG - chr1_1:19582581-19582600 Msa0012850:intron 25.0%
!!! TTTTCTTTGGGTTTAGTTTT+TGG - chr1_1:19582612-19582631 Msa0012850:CDS 25.0%
!!! TTTCTTTGGGTTTAGTTTTT+GGG - chr1_1:19582613-19582632 Msa0012850:CDS 25.0%
!!! TTTCGTATTTGGAATTTTCA+GGG + chr1_1:19583090-19583109 None:intergenic 25.0%
! ATTATTTATCCAAGCAAAGA+TGG - chr1_1:19583245-19583264 Msa0012850:intron 25.0%
! ATTGATGGGATGTTAAAAAA+CGG + chr1_1:19583716-19583735 None:intergenic 25.0%
!! TTTTAACATCCCATCAATAT+AGG - chr1_1:19583718-19583737 Msa0012850:intron 25.0%
! GAAAAAGAAAGACTTAACAA+AGG - chr1_1:19583839-19583858 Msa0012850:intron 25.0%
!! TTACTGTTGTTTGAAGATTA+AGG - chr1_1:19583910-19583929 Msa0012850:intron 25.0%
!! TACTGTTGTTTGAAGATTAA+GGG - chr1_1:19583911-19583930 Msa0012850:intron 25.0%
!! TATAGTTATTGGTAACTTCA+AGG - chr1_1:19584138-19584157 Msa0012850:intron 25.0%
! GTGATTCTATATTTAAAGGT+GGG + chr1_1:19584204-19584223 None:intergenic 25.0%
! TGTGATTCTATATTTAAAGG+TGG + chr1_1:19584205-19584224 None:intergenic 25.0%
!! TATCATTTTCATAACTTCCT+CGG + chr1_1:19584394-19584413 None:intergenic 25.0%
! ACTTTAATTAATCGACCAAA+AGG + chr1_1:19584951-19584970 None:intergenic 25.0%
! AAGAAACTGAAGTAAATAAG+AGG + chr1_1:19585022-19585041 None:intergenic 25.0%
! TGTTAAACAAACATGAATAG+GGG + chr1_1:19585070-19585089 None:intergenic 25.0%
! CTGTTAAACAAACATGAATA+GGG + chr1_1:19585071-19585090 None:intergenic 25.0%
! CATAGATAAAATAAGTGCTA+TGG - chr1_1:19585326-19585345 Msa0012850:CDS 25.0%
! GGTTGTTTATGAAAATTGAA+AGG - chr1_1:19585451-19585470 Msa0012850:CDS 25.0%
!! GTTGTTTTCATAAGCTATCA+AGG + chr1_1:19579271-19579290 None:intergenic 30.0%
GTAAATGAACACAACTGTTT+CGG - chr1_1:19579448-19579467 Msa0012850:intron 30.0%
! TTAAATCCCGACCAAATTTT+TGG - chr1_1:19579492-19579511 Msa0012850:intron 30.0%
ACTAAGTTTCTTAGTAAGGT+GGG + chr1_1:19579566-19579585 None:intergenic 30.0%
TCATGTAACCCATTCTTATA+GGG + chr1_1:19579642-19579661 None:intergenic 30.0%
! TGAAATAAGTTGAAACCAAC+TGG - chr1_1:19579882-19579901 Msa0012850:CDS 30.0%
! CTATTTTATTATCTCTCCCA+GGG - chr1_1:19579919-19579938 Msa0012850:CDS 30.0%
GTTTAAATAGGCAAGCTATT+CGG - chr1_1:19580004-19580023 Msa0012850:intron 30.0%
! ATCTAGAACTATTGCATACA+AGG + chr1_1:19580115-19580134 None:intergenic 30.0%
AAGCTGAGTTCAATTTATGT+GGG - chr1_1:19580136-19580155 Msa0012850:intron 30.0%
GGTTAAAGATTTGTCTAGAA+GGG - chr1_1:19580417-19580436 Msa0012850:intron 30.0%
CAAATCCTTTCCATTATTGA+GGG + chr1_1:19580465-19580484 None:intergenic 30.0%
GATAAACCATCATTCCATAT+CGG + chr1_1:19580527-19580546 None:intergenic 30.0%
!!! GAGGTTTTAGTTTGAGAAAT+TGG - chr1_1:19580715-19580734 Msa0012850:intron 30.0%
! AAATTGGTTCTTTCTCAGAA+AGG - chr1_1:19580731-19580750 Msa0012850:intron 30.0%
! AATTGGTTCTTTCTCAGAAA+GGG - chr1_1:19580732-19580751 Msa0012850:intron 30.0%
TCTGATTTATCATCATAGGT+TGG - chr1_1:19580983-19581002 Msa0012850:intron 30.0%
TTTGCATCTTAGTCAGAATA+CGG - chr1_1:19581229-19581248 Msa0012850:intron 30.0%
GTATTCAATAGTATCAGTGA+AGG - chr1_1:19581331-19581350 Msa0012850:intron 30.0%
! TGATTGATTCCAATGAAACA+TGG - chr1_1:19581376-19581395 Msa0012850:intron 30.0%
!! GTATATTTGTGCTTTAGAAC+TGG - chr1_1:19581466-19581485 Msa0012850:CDS 30.0%
GTCAAATTATTGGGAAGAAA+AGG - chr1_1:19581691-19581710 Msa0012850:intron 30.0%
TGGCTTCATTTATTATAAGC+TGG + chr1_1:19581731-19581750 None:intergenic 30.0%
ATCATGTAAACCTTTATGCT+AGG - chr1_1:19581796-19581815 Msa0012850:intron 30.0%
GTTGAGAAAAAAATGAAGCA+GGG + chr1_1:19581865-19581884 None:intergenic 30.0%
TGTTGAGAAAAAAATGAAGC+AGG + chr1_1:19581866-19581885 None:intergenic 30.0%
ATGTCCATAGACATATTACT+AGG - chr1_1:19582212-19582231 Msa0012850:intron 30.0%
TGCACACTGAATTGAAAAAA+TGG - chr1_1:19582403-19582422 Msa0012850:intron 30.0%
TGAATTCAGTTGTAGGAATT+AGG - chr1_1:19582588-19582607 Msa0012850:intron 30.0%
! TAGGAATTAGGCTTTTCTTT+GGG - chr1_1:19582600-19582619 Msa0012850:CDS 30.0%
AAAGATATGATTTAGATCCG+AGG - chr1_1:19582727-19582746 Msa0012850:intron 30.0%
AAGATATGATTTAGATCCGA+GGG - chr1_1:19582728-19582747 Msa0012850:intron 30.0%
!! GTTTCGTATTTGGAATTTTC+AGG + chr1_1:19583091-19583110 None:intergenic 30.0%
TTTAACACGAGTTTCGTATT+TGG + chr1_1:19583101-19583120 None:intergenic 30.0%
AAAATTGTTTACCCTGAATC+TGG - chr1_1:19583118-19583137 Msa0012850:intron 30.0%
!!! AACAATGCAGTCACTTTTAT+AGG + chr1_1:19583151-19583170 None:intergenic 30.0%
!! CTCTTGATAACCATTTTAAG+TGG + chr1_1:19583193-19583212 None:intergenic 30.0%
!! TTTGATTTGAATGCTGAGTA+TGG - chr1_1:19583330-19583349 Msa0012850:intron 30.0%
TTGTCTGCTTAACTTATAGT+TGG - chr1_1:19583416-19583435 Msa0012850:intron 30.0%
TGTCTGCTTAACTTATAGTT+GGG - chr1_1:19583417-19583436 Msa0012850:intron 30.0%
AATCCCTAGTGTTATCTATT+AGG - chr1_1:19583476-19583495 Msa0012850:intron 30.0%
ATCCCTAGTGTTATCTATTA+GGG - chr1_1:19583477-19583496 Msa0012850:intron 30.0%
GTGTTGTATAAGAATCAAAC+AGG + chr1_1:19583596-19583615 None:intergenic 30.0%
! AGTTTTACAACTCTTGAATC+AGG + chr1_1:19583744-19583763 None:intergenic 30.0%
! TTTCATGATATCTGGAATGA+AGG - chr1_1:19584030-19584049 Msa0012850:intron 30.0%
! TTCATGATATCTGGAATGAA+GGG - chr1_1:19584031-19584050 Msa0012850:intron 30.0%
! ACAGCAATATGTTCTTTTTC+TGG - chr1_1:19584163-19584182 Msa0012850:intron 30.0%
! CAGCAATATGTTCTTTTTCT+GGG - chr1_1:19584164-19584183 Msa0012850:intron 30.0%
TGTTATCCAAGACTTAACAT+GGG - chr1_1:19584303-19584322 Msa0012850:intron 30.0%
TAAAATCCCATGTTAAGTCT+TGG + chr1_1:19584312-19584331 None:intergenic 30.0%
TAGCTATCAATTAGAAGAAC+AGG + chr1_1:19584478-19584497 None:intergenic 30.0%
! GCTAACAATTTTCTCAATTC+AGG - chr1_1:19584544-19584563 Msa0012850:intron 30.0%
TTCCATACGATATTGAACAT+AGG - chr1_1:19584570-19584589 Msa0012850:intron 30.0%
AACCTATGTTCAATATCGTA+TGG + chr1_1:19584575-19584594 None:intergenic 30.0%
CACTTTCTCACTAACAAATT+AGG - chr1_1:19584641-19584660 Msa0012850:intron 30.0%
AAACATACAACAGAAACAGA+TGG + chr1_1:19584836-19584855 None:intergenic 30.0%
!! ATCTGTTTCTGTTGTATGTT+TGG - chr1_1:19584835-19584854 Msa0012850:intron 30.0%
!! AGTTTTGACCTATGGAAAAT+GGG + chr1_1:19584866-19584885 None:intergenic 30.0%
!! AAGTTTTGACCTATGGAAAA+TGG + chr1_1:19584867-19584886 None:intergenic 30.0%
!! ATACTCAAAGTTTTGACCTA+TGG + chr1_1:19584874-19584893 None:intergenic 30.0%
TTTGAGTATGAAGATTAGAC+AGG - chr1_1:19584885-19584904 Msa0012850:intron 30.0%
!!! TCTCGTTTTTTATCCATCTT+AGG - chr1_1:19584990-19585009 Msa0012850:intron 30.0%
CCTGTTAAACAAACATGAAT+AGG + chr1_1:19585072-19585091 None:intergenic 30.0%
CCTATTCATGTTTGTTTAAC+AGG - chr1_1:19585069-19585088 Msa0012850:intron 30.0%
TGTTTGTTTAACAGGAGAAT+AGG - chr1_1:19585077-19585096 Msa0012850:intron 30.0%
!!! ATGCACTTGCTTTTTGAAAA+TGG + chr1_1:19585129-19585148 None:intergenic 30.0%
TTAAGCTCAAATGATTAACG+AGG - chr1_1:19585162-19585181 Msa0012850:intron 30.0%
! TAAAAGGCATAACAAATTGC+CGG + chr1_1:19585385-19585404 None:intergenic 30.0%
! ACACATTTATTTAGGGCATT+TGG - chr1_1:19585535-19585554 Msa0012850:CDS 30.0%
TTCGTAGTGAAAACTATCGA+AGG + chr1_1:19578217-19578236 None:intergenic 35.0%
ATCAGAAGTCTTTGTCTGTT+GGG - chr1_1:19578484-19578503 Msa0012850:three_prime_UTR 35.0%
TCTTTGTCTGTTGGGATTAT+TGG - chr1_1:19578492-19578511 Msa0012850:three_prime_UTR 35.0%
CTCTCACTAATTATATGGTG+AGG - chr1_1:19578538-19578557 Msa0012850:CDS 35.0%
CAGAAAAGATTGTGGAAACT+GGG - chr1_1:19578731-19578750 Msa0012850:intron 35.0%
AAGGAGAGTAGAACAAATGA+AGG - chr1_1:19578801-19578820 Msa0012850:intron 35.0%
AGGAGAGTAGAACAAATGAA+GGG - chr1_1:19578802-19578821 Msa0012850:intron 35.0%
!! TTATTGAGTTGGATCGAGTA+TGG - chr1_1:19578901-19578920 Msa0012850:intron 35.0%
! TTGTTAACCCTCTAGTTTCT+TGG - chr1_1:19579001-19579020 Msa0012850:CDS 35.0%
TCCAGGATGTAAGTAAATTC+TGG - chr1_1:19579049-19579068 Msa0012850:CDS 35.0%
AAAATGGGTAGAACAACTTG+TGG + chr1_1:19579075-19579094 None:intergenic 35.0%
TGTCAATGCTAGTACTTCAT+AGG + chr1_1:19579111-19579130 None:intergenic 35.0%
AATAAGCTGTTTATCCACAC+AGG - chr1_1:19579392-19579411 Msa0012850:intron 35.0%
ATAAGCTGTTTATCCACACA+GGG - chr1_1:19579393-19579412 Msa0012850:intron 35.0%
ATCCACTCCAAAAATTTGGT+CGG + chr1_1:19579502-19579521 None:intergenic 35.0%
GACTAAGTTTCTTAGTAAGG+TGG + chr1_1:19579567-19579586 None:intergenic 35.0%
CTCATGTAACCCATTCTTAT+AGG + chr1_1:19579643-19579662 None:intergenic 35.0%
TTGTTTATATTCGAGGCTAG+AGG - chr1_1:19579729-19579748 Msa0012850:intron 35.0%
! AATAAGTTGAAACCAACTGG+TGG - chr1_1:19579885-19579904 Msa0012850:CDS 35.0%
!! GCTATTTTATTATCTCTCCC+AGG - chr1_1:19579918-19579937 Msa0012850:CDS 35.0%
TCTTCCAAACACACCTAAAT+GGG - chr1_1:19579981-19580000 Msa0012850:intron 35.0%
CACCTAAATGGGGTTTAAAT+AGG - chr1_1:19579992-19580011 Msa0012850:intron 35.0%
TGCCTATTTAAACCCCATTT+AGG + chr1_1:19579997-19580016 None:intergenic 35.0%
GAAGCTGAGTTCAATTTATG+TGG - chr1_1:19580135-19580154 Msa0012850:intron 35.0%
TATAGAGTAGCAGATACCTT+TGG - chr1_1:19580281-19580300 Msa0012850:intron 35.0%
ATAGAGTAGCAGATACCTTT+GGG - chr1_1:19580282-19580301 Msa0012850:intron 35.0%
ACAAAGAAACCTAATCCCAA+AGG + chr1_1:19580300-19580319 None:intergenic 35.0%
AAGACACTTGTCTAAGTTGT+CGG + chr1_1:19580325-19580344 None:intergenic 35.0%
ACACATATCAGACACACATA+CGG - chr1_1:19580393-19580412 Msa0012850:intron 35.0%
GGGTTAAAGATTTGTCTAGA+AGG - chr1_1:19580416-19580435 Msa0012850:intron 35.0%
AGATTTGTCTAGAAGGGATT+TGG - chr1_1:19580423-19580442 Msa0012850:intron 35.0%
CCAAATCCTTTCCATTATTG+AGG + chr1_1:19580466-19580485 None:intergenic 35.0%
! CCTCAATAATGGAAAGGATT+TGG - chr1_1:19580463-19580482 Msa0012850:intron 35.0%
TGTTGGTATAGAGGTGAAAA+GGG - chr1_1:19580585-19580604 Msa0012850:intron 35.0%
!! TTTAATAGGGAGCATTTGAG+AGG - chr1_1:19580696-19580715 Msa0012850:intron 35.0%
! ATCATCATAGGTTGGAACAA+AGG - chr1_1:19580991-19581010 Msa0012850:intron 35.0%
AGCCAAGTTACTCACAATTT+GGG + chr1_1:19581086-19581105 None:intergenic 35.0%
TTGCATCTTAGTCAGAATAC+GGG - chr1_1:19581230-19581249 Msa0012850:intron 35.0%
CATACATCTGTTTGATTGCA+TGG - chr1_1:19581253-19581272 Msa0012850:intron 35.0%
ATCAATCATGCATATGTCGA+CGG + chr1_1:19581364-19581383 None:intergenic 35.0%
!! ATTTGTGCTTTAGAACTGGT+AGG - chr1_1:19581470-19581489 Msa0012850:CDS 35.0%
!! TTTGTGCTTTAGAACTGGTA+GGG - chr1_1:19581471-19581490 Msa0012850:CDS 35.0%
ATTCAAGAAAAAAGCAGCAG+TGG + chr1_1:19581751-19581770 None:intergenic 35.0%
! ATGAAGCAGGGATATTGATT+TGG + chr1_1:19581853-19581872 None:intergenic 35.0%
AACCAAACACAGATGACAAA+AGG + chr1_1:19581913-19581932 None:intergenic 35.0%
CTAAAGTAGTGAATCTCCAA+AGG + chr1_1:19581965-19581984 None:intergenic 35.0%
ATTTGACAACGCAGTTTACA+TGG - chr1_1:19582030-19582049 Msa0012850:intron 35.0%
!!! AGTGTTTTTTTGATACGCCA+GGG - chr1_1:19582086-19582105 Msa0012850:intron 35.0%
!! TTGTAGTGGATTCCCTTATA+AGG - chr1_1:19582120-19582139 Msa0012850:intron 35.0%
TCACGAATAAGGAGATCATA+TGG + chr1_1:19582323-19582342 None:intergenic 35.0%
AAGAGATATTAGAACCAGTG+TGG + chr1_1:19582346-19582365 None:intergenic 35.0%
! GTAGGAATTAGGCTTTTCTT+TGG - chr1_1:19582599-19582618 Msa0012850:CDS 35.0%
! ATAATGCTCTGGTAGTGTAT+GGG + chr1_1:19582690-19582709 None:intergenic 35.0%
! AATAATGCTCTGGTAGTGTA+TGG + chr1_1:19582691-19582710 None:intergenic 35.0%
GCAAAATGATTGGAACTTGT+GGG - chr1_1:19582750-19582769 Msa0012850:intron 35.0%
CAAAATGATTGGAACTTGTG+GGG - chr1_1:19582751-19582770 Msa0012850:intron 35.0%
GAGGAGTAAATATTCGTATG+TGG - chr1_1:19582789-19582808 Msa0012850:intron 35.0%
GTATGTGGTTGTAGAACAAT+CGG - chr1_1:19582804-19582823 Msa0012850:intron 35.0%
TGCAGAGAAGATATTAGATC+TGG - chr1_1:19582903-19582922 Msa0012850:intron 35.0%
ATCTGGTATGCTCACAAATA+AGG - chr1_1:19582920-19582939 Msa0012850:intron 35.0%
TCAAATATAGTGTGGTACAC+CGG - chr1_1:19582972-19582991 Msa0012850:intron 35.0%
! TAGGCTTTTTACCAGATTCA+GGG + chr1_1:19583132-19583151 None:intergenic 35.0%
! ATAGGCTTTTTACCAGATTC+AGG + chr1_1:19583133-19583152 None:intergenic 35.0%
TGACTGCATTGTTGCTAAAT+TGG - chr1_1:19583158-19583177 Msa0012850:intron 35.0%
! GCTTCATTTGCCACTTAAAA+TGG - chr1_1:19583180-19583199 Msa0012850:intron 35.0%
ATCAATGACTGACTAAGATG+AGG + chr1_1:19583383-19583402 None:intergenic 35.0%
CACTAGGGATTATTGTATGA+AGG + chr1_1:19583467-19583486 None:intergenic 35.0%
CACCCTAATAGATAACACTA+GGG + chr1_1:19583482-19583501 None:intergenic 35.0%
ACACCCTAATAGATAACACT+AGG + chr1_1:19583483-19583502 None:intergenic 35.0%
!! TTATCTATTAGGGTGTCGAT+GGG - chr1_1:19583487-19583506 Msa0012850:intron 35.0%
! TATGAAGCACTAACACTCAT+AGG - chr1_1:19583528-19583547 Msa0012850:intron 35.0%
GAATGTATAACACTTGTCTG+AGG + chr1_1:19583637-19583656 None:intergenic 35.0%
! GGGATGTTAAAAAACGGATT+GGG + chr1_1:19583710-19583729 None:intergenic 35.0%
TGGGATGTTAAAAAACGGAT+TGG + chr1_1:19583711-19583730 None:intergenic 35.0%
TGAATCAGGCCTATATTGAT+GGG + chr1_1:19583730-19583749 None:intergenic 35.0%
TTGAATCAGGCCTATATTGA+TGG + chr1_1:19583731-19583750 None:intergenic 35.0%
TGTAAAACTGATCAAGCGAA+TGG - chr1_1:19583755-19583774 Msa0012850:intron 35.0%
GTAAAACTGATCAAGCGAAT+GGG - chr1_1:19583756-19583775 Msa0012850:intron 35.0%
!!! AACTCGCTTTTGATTTGGAA+TGG + chr1_1:19583790-19583809 None:intergenic 35.0%
!! CACAAAACTCGCTTTTGATT+TGG + chr1_1:19583795-19583814 None:intergenic 35.0%
AAGATCTTCCTGGATTTGAA+AGG - chr1_1:19583877-19583896 Msa0012850:intron 35.0%
TTGAAGATTAAGGGAAACAC+TGG - chr1_1:19583920-19583939 Msa0012850:intron 35.0%
! CTTCTTAAACTTGCTTCTGT+TGG - chr1_1:19583988-19584007 Msa0012850:intron 35.0%
TTTAGGCGTTTCATGATATC+TGG - chr1_1:19584022-19584041 Msa0012850:intron 35.0%
! TCATGATATCTGGAATGAAG+GGG - chr1_1:19584032-19584051 Msa0012850:intron 35.0%
AGATTTGACTCAGTTCTTGA+TGG - chr1_1:19584066-19584085 Msa0012850:intron 35.0%
! ATATGTTCTTTTTCTGGGTG+TGG - chr1_1:19584169-19584188 Msa0012850:intron 35.0%
GAAAAACAGATTCATGTGCA+TGG + chr1_1:19584245-19584264 None:intergenic 35.0%
CATGTTAAGTCTTGGATAAC+AGG + chr1_1:19584304-19584323 None:intergenic 35.0%
CTGTTATCCAAGACTTAACA+TGG - chr1_1:19584302-19584321 Msa0012850:intron 35.0%
TTATGCAATAGGCAGTAGAA+CGG - chr1_1:19584340-19584359 Msa0012850:intron 35.0%
CAACAATTACCTGATGTACA+TGG + chr1_1:19584449-19584468 None:intergenic 35.0%
ATCTAATCCTACAGCATACT+TGG + chr1_1:19584510-19584529 None:intergenic 35.0%
!! TTGAACATAGGTTGATTGAC+TGG - chr1_1:19584582-19584601 Msa0012850:intron 35.0%
GAAACAGATGGAGATATCTA+CGG + chr1_1:19584824-19584843 None:intergenic 35.0%
!! AGATGGAATTGATGACCTTT+TGG - chr1_1:19584933-19584952 Msa0012850:intron 35.0%
TAAGAGGTTCTATCCTAAGA+TGG + chr1_1:19585006-19585025 None:intergenic 35.0%
TAGAAGCTAATGAAGAGCTA+AGG - chr1_1:19585102-19585121 Msa0012850:intron 35.0%
ATTAACGAGGCGAATATCTT+TGG - chr1_1:19585175-19585194 Msa0012850:intron 35.0%
! ATTTTACATGCTGCAGAACA+TGG + chr1_1:19585230-19585249 None:intergenic 35.0%
ATAAGTGCTATGGAAGAAAC+AGG - chr1_1:19585336-19585355 Msa0012850:CDS 35.0%
! GCCTTTTACTATTTGATTGC+CGG - chr1_1:19585397-19585416 Msa0012850:CDS 35.0%
TCCGGCAATCAAATAGTAAA+AGG + chr1_1:19585401-19585420 None:intergenic 35.0%
AAAATTGAGTTCCTAGACTC+CGG + chr1_1:19585419-19585438 None:intergenic 35.0%
GGCATTTGGTTGTATGAAAA+TGG - chr1_1:19585549-19585568 Msa0012850:CDS 35.0%
AAAATGGTGAGATACGAGTT+TGG - chr1_1:19585565-19585584 Msa0012850:CDS 35.0%
! CGTCGTTGTTGTTGAGAATT+GGG + chr1_1:19578242-19578261 None:intergenic 40.0%
! TCGTCGTTGTTGTTGAGAAT+TGG + chr1_1:19578243-19578262 None:intergenic 40.0%
TTCTTATTCCACGTCACCTT+CGG + chr1_1:19578273-19578292 None:intergenic 40.0%
GGAATAAGAAATACCGAGAC+CGG - chr1_1:19578283-19578302 Msa0012850:three_prime_UTR 40.0%
TTAAACTTCACTCTCCCCTT+CGG + chr1_1:19578336-19578355 None:intergenic 40.0%
AGTGAAGTTTAAGGAGGAAG+AGG - chr1_1:19578344-19578363 Msa0012850:three_prime_UTR 40.0%
GATCAGAAGTCTTTGTCTGT+TGG - chr1_1:19578483-19578502 Msa0012850:three_prime_UTR 40.0%
! ATTATTGGTGCTCCTAATGC+TGG - chr1_1:19578507-19578526 Msa0012850:exon 40.0%
AGAGAAGATTTGCCAGCATT+AGG + chr1_1:19578522-19578541 None:intergenic 40.0%
! CTCAGATGAGAATTTTGCGT+TGG - chr1_1:19578611-19578630 Msa0012850:intron 40.0%
GATAGATGAGAATGTTGCGT+TGG - chr1_1:19578645-19578664 Msa0012850:intron 40.0%
GCAGAAAAGATTGTGGAAAC+TGG - chr1_1:19578730-19578749 Msa0012850:intron 40.0%
TTAGGTGGTTTAGGCATGTA+GGG - chr1_1:19578755-19578774 Msa0012850:intron 40.0%
AGTCAGATCACTAAAGACAG+AGG - chr1_1:19578826-19578845 Msa0012850:intron 40.0%
! TAACCCTCTAGTTTCTTGGA+AGG - chr1_1:19579005-19579024 Msa0012850:CDS 40.0%
! AACCCTCTAGTTTCTTGGAA+GGG - chr1_1:19579006-19579025 Msa0012850:CDS 40.0%
GCCAGAATTTACTTACATCC+TGG + chr1_1:19579053-19579072 None:intergenic 40.0%
CATTGACACAGACATGAATG+TGG - chr1_1:19579123-19579142 Msa0012850:intron 40.0%
! TCGGTGTTTGTGCTAAACAT+AGG - chr1_1:19579467-19579486 Msa0012850:intron 40.0%
TCCACTCCAAAAATTTGGTC+GGG + chr1_1:19579501-19579520 None:intergenic 40.0%
! TCTGAAGTGCCCTATAAGAA+TGG - chr1_1:19579630-19579649 Msa0012850:CDS 40.0%
! CTGAAGTGCCCTATAAGAAT+GGG - chr1_1:19579631-19579650 Msa0012850:CDS 40.0%
ACACTTGTGTATATGTCCCT+GGG + chr1_1:19579938-19579957 None:intergenic 40.0%
AACACTTGTGTATATGTCCC+TGG + chr1_1:19579939-19579958 None:intergenic 40.0%
CTCTTCCAAACACACCTAAA+TGG - chr1_1:19579980-19579999 Msa0012850:intron 40.0%
CTTCCAAACACACCTAAATG+GGG - chr1_1:19579982-19580001 Msa0012850:intron 40.0%
AAACCCCATTTAGGTGTGTT+TGG + chr1_1:19579988-19580007 None:intergenic 40.0%
TACAAGGAGAGACTTGCAAA+GGG + chr1_1:19580099-19580118 None:intergenic 40.0%
ATACAAGGAGAGACTTGCAA+AGG + chr1_1:19580100-19580119 None:intergenic 40.0%
!! TAGCAGATACCTTTGGGATT+AGG - chr1_1:19580288-19580307 Msa0012850:intron 40.0%
CACATATCAGACACACATAC+GGG - chr1_1:19580394-19580413 Msa0012850:intron 40.0%
ACATATCAGACACACATACG+GGG - chr1_1:19580395-19580414 Msa0012850:intron 40.0%
TGAGATTCCTCCCTCAATAA+TGG - chr1_1:19580452-19580471 Msa0012850:intron 40.0%
! TTCCTCCCTCAATAATGGAA+AGG - chr1_1:19580457-19580476 Msa0012850:intron 40.0%
ATCCTTTCCATTATTGAGGG+AGG + chr1_1:19580462-19580481 None:intergenic 40.0%
AGTTTAGACCTAAGAAGGTG+TGG + chr1_1:19580566-19580585 None:intergenic 40.0%
CCAACAGTTTAGACCTAAGA+AGG + chr1_1:19580571-19580590 None:intergenic 40.0%
CCTTCTTAGGTCTAAACTGT+TGG - chr1_1:19580568-19580587 Msa0012850:intron 40.0%
GGTCTAAACTGTTGGTATAG+AGG - chr1_1:19580576-19580595 Msa0012850:intron 40.0%
CTGTTGGTATAGAGGTGAAA+AGG - chr1_1:19580584-19580603 Msa0012850:intron 40.0%
ATAGAGGTGAAAAGGGTGAT+AGG - chr1_1:19580592-19580611 Msa0012850:intron 40.0%
GCAATGAACTATCATCTGCT+TGG - chr1_1:19580642-19580661 Msa0012850:intron 40.0%
ATGAACTATCATCTGCTTGG+AGG - chr1_1:19580645-19580664 Msa0012850:intron 40.0%
TCTCTGGTTGTAACTTTGTG+AGG - chr1_1:19580879-19580898 Msa0012850:intron 40.0%
! ATCATAGGTTGGAACAAAGG+TGG - chr1_1:19580994-19581013 Msa0012850:intron 40.0%
ACCACAACTCATGAAGTTGT+GGG - chr1_1:19581040-19581059 Msa0012850:intron 40.0%
CACCCAAATTGTGAGTAACT+TGG - chr1_1:19581081-19581100 Msa0012850:intron 40.0%
CAGCCAAGTTACTCACAATT+TGG + chr1_1:19581087-19581106 None:intergenic 40.0%
GAATGCTGAGGTTACAATAG+AGG - chr1_1:19581135-19581154 Msa0012850:intron 40.0%
TAACAGGATGCCTAGCATAA+AGG + chr1_1:19581809-19581828 None:intergenic 40.0%
CTAGGCATCCTGTTAAAATC+CGG - chr1_1:19581814-19581833 Msa0012850:intron 40.0%
!! CAGCAATACCGGATTTTAAC+AGG + chr1_1:19581825-19581844 None:intergenic 40.0%
!! GCAGGGATATTGATTTGGTA+GGG + chr1_1:19581848-19581867 None:intergenic 40.0%
!! AGCAGGGATATTGATTTGGT+AGG + chr1_1:19581849-19581868 None:intergenic 40.0%
ACAAAAGGCAAGAACTACAC+GGG + chr1_1:19581898-19581917 None:intergenic 40.0%
GACAAAAGGCAAGAACTACA+CGG + chr1_1:19581899-19581918 None:intergenic 40.0%
! TGCCTTTTGTCATCTGTGTT+TGG - chr1_1:19581908-19581927 Msa0012850:intron 40.0%
!!! CAGTGTTTTTTTGATACGCC+AGG - chr1_1:19582085-19582104 Msa0012850:intron 40.0%
ATTCCCTTATAAGGATGCCA+AGG - chr1_1:19582129-19582148 Msa0012850:intron 40.0%
! ATACTCTGACGATGGATTCT+AGG - chr1_1:19582261-19582280 Msa0012850:intron 40.0%
! TACTCTGACGATGGATTCTA+GGG - chr1_1:19582262-19582281 Msa0012850:intron 40.0%
CTCTGACGATGAATTCAACT+AGG - chr1_1:19582521-19582540 Msa0012850:intron 40.0%
CTCTCGAATGAATAATGCTC+TGG + chr1_1:19582701-19582720 None:intergenic 40.0%
! AGTTCCAATCATTTTGCCCT+CGG + chr1_1:19582747-19582766 None:intergenic 40.0%
GGCAAAATGATTGGAACTTG+TGG - chr1_1:19582749-19582768 Msa0012850:intron 40.0%
!!! GGGGTTTATTTTGTGAACTG+AGG - chr1_1:19582770-19582789 Msa0012850:intron 40.0%
TCCAACGGTCAAATATAGTG+TGG - chr1_1:19582964-19582983 Msa0012850:intron 40.0%
ACCACACTATATTTGACCGT+TGG + chr1_1:19582968-19582987 None:intergenic 40.0%
!! AGTAGGTGAATTCTAAGGTG+GGG + chr1_1:19583016-19583035 None:intergenic 40.0%
!! GAGTAGGTGAATTCTAAGGT+GGG + chr1_1:19583017-19583036 None:intergenic 40.0%
! AGAGTAGGTGAATTCTAAGG+TGG + chr1_1:19583018-19583037 None:intergenic 40.0%
GTCAGAGTAGGTGAATTCTA+AGG + chr1_1:19583021-19583040 None:intergenic 40.0%
TCAAACACAACTGTCAGAGT+AGG + chr1_1:19583033-19583052 None:intergenic 40.0%
GCTTAACTTATAGTTGGGCA+TGG - chr1_1:19583422-19583441 Msa0012850:intron 40.0%
!! GTTATCTATTAGGGTGTCGA+TGG - chr1_1:19583486-19583505 Msa0012850:intron 40.0%
GTTAGTGCTTCATACTGCTT+GGG + chr1_1:19583522-19583541 None:intergenic 40.0%
TGTTAGTGCTTCATACTGCT+TGG + chr1_1:19583523-19583542 None:intergenic 40.0%
GCACTAACACTCATAGGTTT+AGG - chr1_1:19583534-19583553 Msa0012850:intron 40.0%
GAAGAATTCGAAGATCTTCC+TGG - chr1_1:19583867-19583886 Msa0012850:intron 40.0%
CTTCCTGGATTTGAAAGGTA+AGG - chr1_1:19583882-19583901 Msa0012850:intron 40.0%
AGACCTTACCTTTCAAATCC+AGG + chr1_1:19583888-19583907 None:intergenic 40.0%
! CATGATATCTGGAATGAAGG+GGG - chr1_1:19584033-19584052 Msa0012850:intron 40.0%
GTAAATGGATCTTCTTCCCA+GGG + chr1_1:19584366-19584385 None:intergenic 40.0%
TTTCATAACTTCCTCGGTCA+TGG + chr1_1:19584388-19584407 None:intergenic 40.0%
CATTAGAAGTTGTGCGTGAA+AGG - chr1_1:19584415-19584434 Msa0012850:intron 40.0%
ATTTGTGCCAAGTATGCTGT+AGG - chr1_1:19584500-19584519 Msa0012850:intron 40.0%
GACTCTTCTTTGAACTCAGA+TGG - chr1_1:19584916-19584935 Msa0012850:intron 40.0%
AACATGAATAGGGGATGAGA+GGG + chr1_1:19585061-19585080 None:intergenic 40.0%
AAACATGAATAGGGGATGAG+AGG + chr1_1:19585062-19585081 None:intergenic 40.0%
AACATGGTGTGTGGCAAAAA+AGG + chr1_1:19585214-19585233 None:intergenic 40.0%
TGCAGCATGTAAAATGCCAA+AGG - chr1_1:19585235-19585254 Msa0012850:CDS 40.0%
GCAGCATGTAAAATGCCAAA+GGG - chr1_1:19585236-19585255 Msa0012850:CDS 40.0%
CAGCATGTAAAATGCCAAAG+GGG - chr1_1:19585237-19585256 Msa0012850:CDS 40.0%
! AAGAAACAGGTTGAGTTCGT+TGG - chr1_1:19585349-19585368 Msa0012850:CDS 40.0%
!!! GTTGTGGTGGTGGTGATTTT+GGG + chr1_1:19578114-19578133 None:intergenic 45.0%
!! TGAATGTTCGGGTTGAGGAT+CGG + chr1_1:19578187-19578206 None:intergenic 45.0%
AAGGTAGCGTCTGAATGTTC+GGG + chr1_1:19578198-19578217 None:intergenic 45.0%
GAAGGTAGCGTCTGAATGTT+CGG + chr1_1:19578199-19578218 None:intergenic 45.0%
TAAGAAATACCGAGACCGGA+CGG - chr1_1:19578287-19578306 Msa0012850:three_prime_UTR 45.0%
CGAACACAAGTTTATCCGTC+CGG + chr1_1:19578305-19578324 None:intergenic 45.0%
CGGACGGATAAACTTGTGTT+CGG - chr1_1:19578303-19578322 Msa0012850:three_prime_UTR 45.0%
GAAGGGGAGAGTGAAGTTTA+AGG - chr1_1:19578335-19578354 Msa0012850:three_prime_UTR 45.0%
GAAGTTTAAGGAGGAAGAGG+AGG - chr1_1:19578347-19578366 Msa0012850:three_prime_UTR 45.0%
AGAGGAGGAGAGGAAAACTA+AGG - chr1_1:19578362-19578381 Msa0012850:three_prime_UTR 45.0%
! GAAAACTAAGGCGCTTGAGA+AGG - chr1_1:19578374-19578393 Msa0012850:three_prime_UTR 45.0%
GAGGAGGAAGATGAAGATGT+CGG - chr1_1:19578444-19578463 Msa0012850:three_prime_UTR 45.0%
!! AGATGTCGGTGTTGTGAATG+AGG - chr1_1:19578458-19578477 Msa0012850:three_prime_UTR 45.0%
TGACAACGTTAGAGCGAGAT+TGG - chr1_1:19578703-19578722 Msa0012850:intron 45.0%
GACAACGTTAGAGCGAGATT+GGG - chr1_1:19578704-19578723 Msa0012850:intron 45.0%
ACAACGTTAGAGCGAGATTG+GGG - chr1_1:19578705-19578724 Msa0012850:intron 45.0%
TGGGGTAGCAGAAAAGATTG+TGG - chr1_1:19578723-19578742 Msa0012850:intron 45.0%
AGATTGTGGAAACTGGGCTT+AGG - chr1_1:19578737-19578756 Msa0012850:intron 45.0%
AAACTGGGCTTAGGTGGTTT+AGG - chr1_1:19578746-19578765 Msa0012850:intron 45.0%
CTTAGGTGGTTTAGGCATGT+AGG - chr1_1:19578754-19578773 Msa0012850:intron 45.0%
! ACCCTCTAGTTTCTTGGAAG+GGG - chr1_1:19579007-19579026 Msa0012850:CDS 45.0%
ACCCCTTCCAAGAAACTAGA+GGG + chr1_1:19579011-19579030 None:intergenic 45.0%
AACCCCTTCCAAGAAACTAG+AGG + chr1_1:19579012-19579031 None:intergenic 45.0%
CTAGTTTCTTGGAAGGGGTT+TGG - chr1_1:19579012-19579031 Msa0012850:CDS 45.0%
TGGAACACGATTTCTGACGT+AGG - chr1_1:19579143-19579162 Msa0012850:intron 45.0%
GGAACACGATTTCTGACGTA+GGG - chr1_1:19579144-19579163 Msa0012850:intron 45.0%
TCCACACAGGGCAATAAACA+TGG - chr1_1:19579405-19579424 Msa0012850:intron 45.0%
ACCATGTTTATTGCCCTGTG+TGG + chr1_1:19579409-19579428 None:intergenic 45.0%
!! TCCCGACCAAATTTTTGGAG+TGG - chr1_1:19579497-19579516 Msa0012850:intron 45.0%
GCTTATATGTGTCCACCAGT+TGG + chr1_1:19579900-19579919 None:intergenic 45.0%
AACACACCTGAGATACTCCT+TGG - chr1_1:19580370-19580389 Msa0012850:intron 45.0%
!! ATGTGTCCAAGGAGTATCTC+AGG + chr1_1:19580379-19580398 None:intergenic 45.0%
GTGTGTCTGATATGTGTCCA+AGG + chr1_1:19580390-19580409 None:intergenic 45.0%
CATATCAGACACACATACGG+GGG - chr1_1:19580396-19580415 Msa0012850:intron 45.0%
!! TCTCTAAGAGTGTTCTCCAG+TGG - chr1_1:19580497-19580516 Msa0012850:intron 45.0%
!! CTCTAAGAGTGTTCTCCAGT+GGG - chr1_1:19580498-19580517 Msa0012850:intron 45.0%
!! TCTAAGAGTGTTCTCCAGTG+GGG - chr1_1:19580499-19580518 Msa0012850:intron 45.0%
TGAAGAGTCCACACCTTCTT+AGG - chr1_1:19580555-19580574 Msa0012850:intron 45.0%
GGAACAAGCTCCTTACAAGA+TGG + chr1_1:19580784-19580803 None:intergenic 45.0%
GAGGTTATCAAGATCGTGAG+TGG + chr1_1:19580852-19580871 None:intergenic 45.0%
! ATAGGTTGGAACAAAGGTGG+CGG - chr1_1:19580997-19581016 Msa0012850:intron 45.0%
CACCACAACTCATGAAGTTG+TGG - chr1_1:19581039-19581058 Msa0012850:intron 45.0%
GTGTGTAAAAGGGAATGCTG+AGG - chr1_1:19581123-19581142 Msa0012850:intron 45.0%
ATTTGGTAGGGCAGCAATAC+CGG + chr1_1:19581836-19581855 None:intergenic 45.0%
CTACAATTTAGCACAAGCCC+TGG + chr1_1:19582106-19582125 None:intergenic 45.0%
GGGCTTGTGCTAAATTGTAG+TGG - chr1_1:19582106-19582125 Msa0012850:intron 45.0%
GAGCCTTGGCATCCTTATAA+GGG + chr1_1:19582135-19582154 None:intergenic 45.0%
CTGAGGAAATACTCTGACGA+TGG - chr1_1:19582253-19582272 Msa0012850:intron 45.0%
GAGGTGTACCACTATACCAT+TGG - chr1_1:19582286-19582305 Msa0012850:intron 45.0%
AACCAGTGTGGTCACGAATA+AGG + chr1_1:19582334-19582353 None:intergenic 45.0%
TAGAAGATATCAACGTCGCG+CGG + chr1_1:19582667-19582686 None:intergenic 45.0%
AGATCCGAGGGCAAAATGAT+TGG - chr1_1:19582740-19582759 Msa0012850:intron 45.0%
ACAACGACATGCCAGAACAA+CGG + chr1_1:19582839-19582858 None:intergenic 45.0%
GCGAAATGAGATGTGTTAGG+CGG - chr1_1:19582865-19582884 Msa0012850:intron 45.0%
GGCTCAATTTAATCCCTCAC+CGG + chr1_1:19582994-19583013 None:intergenic 45.0%
!! GTAGGTGAATTCTAAGGTGG+GGG + chr1_1:19583015-19583034 None:intergenic 45.0%
CGTCTATAGCCATCTTTGCT+TGG + chr1_1:19583257-19583276 None:intergenic 45.0%
TCTGCAACATGTCGAACATG+TGG + chr1_1:19583565-19583584 None:intergenic 45.0%
TGATCAAGCGAATGGGAGAA+CGG - chr1_1:19583763-19583782 Msa0012850:intron 45.0%
GGTAAATGGATCTTCTTCCC+AGG + chr1_1:19584367-19584386 None:intergenic 45.0%
AGATCCATTTACCATGACCG+AGG - chr1_1:19584374-19584393 Msa0012850:intron 45.0%
ACTTCCTCGGTCATGGTAAA+TGG + chr1_1:19584381-19584400 None:intergenic 45.0%
AGTTGTGCGTGAAAGGTTGT+TGG - chr1_1:19584422-19584441 Msa0012850:intron 45.0%
GTTGTTGGACCATGTACATC+AGG - chr1_1:19584437-19584456 Msa0012850:intron 45.0%
AGTTGCGAGATGGTTCTCTT+AGG - chr1_1:19584609-19584628 Msa0012850:intron 45.0%
AGGCCAACTCAAGATTCTTG+TGG - chr1_1:19584661-19584680 Msa0012850:intron 45.0%
GGCCAACTCAAGATTCTTGT+GGG - chr1_1:19584662-19584681 Msa0012850:intron 45.0%
GCCAACTCAAGATTCTTGTG+GGG - chr1_1:19584663-19584682 Msa0012850:intron 45.0%
TCCCCACAAGAATCTTGAGT+TGG + chr1_1:19584667-19584686 None:intergenic 45.0%
! GGAAGCGTGGCTCAAAAATT+GGG - chr1_1:19584684-19584703 Msa0012850:intron 45.0%
! TGGTTGTGCCCATTTTCCAT+AGG - chr1_1:19584855-19584874 Msa0012850:intron 45.0%
ACATGAATAGGGGATGAGAG+GGG + chr1_1:19585060-19585079 None:intergenic 45.0%
!! GCAAGTGCATCTAGTTCTTC+AGG - chr1_1:19585139-19585158 Msa0012850:intron 45.0%
GTGTAATTCACACACCCCTT+TGG + chr1_1:19585254-19585273 None:intergenic 45.0%
CAAAACCTTGCCTGAGAACA+GGG - chr1_1:19585299-19585318 Msa0012850:CDS 45.0%
TCTATGATGACCCTGTTCTC+AGG + chr1_1:19585312-19585331 None:intergenic 45.0%
CTATTTGATTGCCGGAGTCT+AGG - chr1_1:19585405-19585424 Msa0012850:CDS 45.0%
!!! GGTTGTGGTGGTGGTGATTT+TGG + chr1_1:19578115-19578134 None:intergenic 50.0%
GAAGATTGTGGTGGTTGTGG+TGG + chr1_1:19578127-19578146 None:intergenic 50.0%
! GAAGAAAGCGCGGAAGATTG+TGG + chr1_1:19578139-19578158 None:intergenic 50.0%
!! GAATGTTCGGGTTGAGGATC+GGG + chr1_1:19578186-19578205 None:intergenic 50.0%
CAACGACGAAGAAAAGCCGA+AGG - chr1_1:19578254-19578273 Msa0012850:three_prime_UTR 50.0%
AAGAAAAGCCGAAGGTGACG+TGG - chr1_1:19578262-19578281 Msa0012850:three_prime_UTR 50.0%
CAAGTTTATCCGTCCGGTCT+CGG + chr1_1:19578299-19578318 None:intergenic 50.0%
GGGGAGAGTGAAGTTTAAGG+AGG - chr1_1:19578338-19578357 Msa0012850:three_prime_UTR 50.0%
TTAAGGAGGAAGAGGAGGAG+AGG - chr1_1:19578352-19578371 Msa0012850:three_prime_UTR 50.0%
!! TGTCGGTGTTGTGAATGAGG+AGG - chr1_1:19578461-19578480 Msa0012850:three_prime_UTR 50.0%
TTGTGGAAACTGGGCTTAGG+TGG - chr1_1:19578740-19578759 Msa0012850:intron 50.0%
ATGTATCCTGCCCCACTTAG+TGG - chr1_1:19578957-19578976 Msa0012850:intron 50.0%
TGTATCCTGCCCCACTTAGT+GGG - chr1_1:19578958-19578977 Msa0012850:intron 50.0%
AAGCCTCATCCCACTAAGTG+GGG + chr1_1:19578970-19578989 None:intergenic 50.0%
CAAGCCTCATCCCACTAAGT+GGG + chr1_1:19578971-19578990 None:intergenic 50.0%
TGGTAATCCTGAGTTCGTCC+AGG - chr1_1:19579032-19579051 Msa0012850:CDS 50.0%
CTTACATCCTGGACGAACTC+AGG + chr1_1:19579042-19579061 None:intergenic 50.0%
!! TTATTTAGGGGGAGCGCCTT+AGG - chr1_1:19579758-19579777 Msa0012850:intron 50.0%
ATTCCATATCGGATCCCCAC+TGG + chr1_1:19580516-19580535 None:intergenic 50.0%
GGGGATCCGATATGGAATGA+TGG - chr1_1:19580518-19580537 Msa0012850:intron 50.0%
GGTGAAAAGGGTGATAGGTC+TGG - chr1_1:19580597-19580616 Msa0012850:intron 50.0%
CTATCATCTGCTTGGAGGTG+TGG - chr1_1:19580650-19580669 Msa0012850:intron 50.0%
GATAACCTCGTCGTGTTCTC+TGG - chr1_1:19580863-19580882 Msa0012850:intron 50.0%
TACAACCAGAGAACACGACG+AGG + chr1_1:19580871-19580890 None:intergenic 50.0%
GCCCACAACTTCATGAGTTG+TGG + chr1_1:19581044-19581063 None:intergenic 50.0%
!! GTTGTGGGCGTGTTGACTAA+AGG - chr1_1:19581055-19581074 Msa0012850:intron 50.0%
CGAGCCTTGGCATCCTTATA+AGG + chr1_1:19582136-19582155 None:intergenic 50.0%
AGCACTTTCAACACGAGCCT+TGG + chr1_1:19582149-19582168 None:intergenic 50.0%
!! AGGCTCGTGTTGAAAGTGCT+TGG - chr1_1:19582149-19582168 Msa0012850:intron 50.0%
CTCCTTATTCGTGACCACAC+TGG - chr1_1:19582329-19582348 Msa0012850:intron 50.0%
TGGTAGGCGAGAGAAAGAAC+GGG + chr1_1:19582370-19582389 None:intergenic 50.0%
CTGGTAGGCGAGAGAAAGAA+CGG + chr1_1:19582371-19582390 None:intergenic 50.0%
GCAGCGAAATGAGATCTGGT+AGG + chr1_1:19582386-19582405 None:intergenic 50.0%
GTGTGCAGCGAAATGAGATC+TGG + chr1_1:19582390-19582409 None:intergenic 50.0%
GTTGTAGAACAATCGGAGCC+CGG - chr1_1:19582811-19582830 Msa0012850:intron 50.0%
GCGGCGAAATGAGATGTGTT+AGG - chr1_1:19582862-19582881 Msa0012850:intron 50.0%
GTTAGGCGGAGAGAAAGAAC+TGG - chr1_1:19582879-19582898 Msa0012850:intron 50.0%
TATAGTGTGGTACACCGGTG+AGG - chr1_1:19582977-19582996 Msa0012850:intron 50.0%
ATAGTGTGGTACACCGGTGA+GGG - chr1_1:19582978-19582997 Msa0012850:intron 50.0%
!! TTAGGGTGTCGATGGGTCAT+TGG - chr1_1:19583494-19583513 Msa0012850:intron 50.0%
GTTCGACATGTTGCAGACAC+TGG - chr1_1:19583568-19583587 Msa0012850:intron 50.0%
! ATATCTGGAATGAAGGGGGC+TGG - chr1_1:19584037-19584056 Msa0012850:intron 50.0%
GACTCAGTTCTTGATGGAGC+AGG - chr1_1:19584072-19584091 Msa0012850:intron 50.0%
GACTGGAAAGAGTTGCGAGA+TGG - chr1_1:19584599-19584618 Msa0012850:intron 50.0%
AAGATTCTTGTGGGGAAGCG+TGG - chr1_1:19584671-19584690 Msa0012850:intron 50.0%
! GGGAAGCGTGGCTCAAAAAT+TGG - chr1_1:19584683-19584702 Msa0012850:intron 50.0%
CATGAATAGGGGATGAGAGG+GGG + chr1_1:19585059-19585078 None:intergenic 50.0%
ATGCTGCAGAACATGGTGTG+TGG + chr1_1:19585223-19585242 None:intergenic 50.0%
! CCTGTTCTCAGGCAAGGTTT+TGG + chr1_1:19585301-19585320 None:intergenic 50.0%
CCAAAACCTTGCCTGAGAAC+AGG - chr1_1:19585298-19585317 Msa0012850:CDS 50.0%
!! GTTCGTTGGTGATCTCATGC+CGG - chr1_1:19585363-19585382 Msa0012850:CDS 50.0%
GATTGTGGTGGTTGTGGTGG+TGG + chr1_1:19578124-19578143 None:intergenic 55.0%
GCGGAAGATTGTGGTGGTTG+TGG + chr1_1:19578130-19578149 None:intergenic 55.0%
! GAAAGCGCGGAAGATTGTGG+TGG + chr1_1:19578136-19578155 None:intergenic 55.0%
!! GCGTCTGAATGTTCGGGTTG+AGG + chr1_1:19578192-19578211 None:intergenic 55.0%
! GGCGCTTGAGAAGGCTTTGT+TGG - chr1_1:19578383-19578402 Msa0012850:three_prime_UTR 55.0%
AGCTGCGTTGAGTAAACCCG+AGG - chr1_1:19578407-19578426 Msa0012850:three_prime_UTR 55.0%
TGCGTTGAGTAAACCCGAGG+AGG - chr1_1:19578410-19578429 Msa0012850:three_prime_UTR 55.0%
GTTGAGTAAACCCGAGGAGG+AGG - chr1_1:19578413-19578432 Msa0012850:three_prime_UTR 55.0%
CCAAGCCTCATCCCACTAAG+TGG + chr1_1:19578972-19578991 None:intergenic 55.0%
CCACTTAGTGGGATGAGGCT+TGG - chr1_1:19578969-19578988 Msa0012850:intron 55.0%
TCTCCAGTGGGGATCCGATA+TGG - chr1_1:19580510-19580529 Msa0012850:intron 55.0%
GCAAGAACTACACGGGAGCA+GGG + chr1_1:19581891-19581910 None:intergenic 55.0%
!! TGACGATGGATTCTAGGGCG+AGG - chr1_1:19582267-19582286 Msa0012850:intron 55.0%
ACATGCCAGAACAACGGCTC+CGG + chr1_1:19582833-19582852 None:intergenic 55.0%
TCTGGCATGTCGTTGTGCTG+CGG - chr1_1:19582843-19582862 Msa0012850:intron 55.0%
ATGGCTATAGACGCGTTGCG+CGG - chr1_1:19583264-19583283 Msa0012850:intron 55.0%
AATAGGCAGTAGAACGGCCC+TGG - chr1_1:19584346-19584365 Msa0012850:intron 55.0%
ATAGGCAGTAGAACGGCCCT+GGG - chr1_1:19584347-19584366 Msa0012850:intron 55.0%
GATGACCCTGTTCTCAGGCA+AGG + chr1_1:19585307-19585326 None:intergenic 55.0%
GTTCGGCGGAGAAGAAAGCG+CGG + chr1_1:19578149-19578168 None:intergenic 60.0%
AGGATCGGGTTCCGGTGTGA+GGG + chr1_1:19578172-19578191 None:intergenic 60.0%
!! TCGGGTTGAGGATCGGGTTC+CGG + chr1_1:19578180-19578199 None:intergenic 60.0%
TGTGTTCGGCGATGAGCCGA+AGG - chr1_1:19578317-19578336 Msa0012850:three_prime_UTR 60.0%
GTGTTCGGCGATGAGCCGAA+GGG - chr1_1:19578318-19578337 Msa0012850:three_prime_UTR 60.0%
TGTTCGGCGATGAGCCGAAG+GGG - chr1_1:19578319-19578338 Msa0012850:three_prime_UTR 60.0%
GAGTAAACCCGAGGAGGAGG+AGG - chr1_1:19578416-19578435 Msa0012850:three_prime_UTR 60.0%
TAAACCCGAGGAGGAGGAGG+AGG - chr1_1:19578419-19578438 Msa0012850:three_prime_UTR 60.0%
CTCATCCCACTAAGTGGGGC+AGG + chr1_1:19578966-19578985 None:intergenic 60.0%
CTGCCCCACTTAGTGGGATG+AGG - chr1_1:19578964-19578983 Msa0012850:intron 60.0%
GGCAAGAACTACACGGGAGC+AGG + chr1_1:19581892-19581911 None:intergenic 60.0%
CATGCCAGAACAACGGCTCC+GGG + chr1_1:19582832-19582851 None:intergenic 60.0%
GAATAGGGGATGAGAGGGGG+AGG + chr1_1:19585056-19585075 None:intergenic 60.0%
TTCCGGTGTGAGGGGTTCGG+CGG + chr1_1:19578163-19578182 None:intergenic 65.0%
GGGTTCCGGTGTGAGGGGTT+CGG + chr1_1:19578166-19578185 None:intergenic 65.0%
GGATCGGGTTCCGGTGTGAG+GGG + chr1_1:19578171-19578190 None:intergenic 65.0%
GAGGATCGGGTTCCGGTGTG+AGG + chr1_1:19578173-19578192 None:intergenic 65.0%
TCCTCCTCCTCCTCCTCCTC+GGG + chr1_1:19578426-19578445 None:intergenic 65.0%
CTCCTCCTCCTCCTCCTCCT+CGG + chr1_1:19578427-19578446 None:intergenic 65.0%
CTCCGCCGAACCCCTCACAC+CGG - chr1_1:19578158-19578177 Msa0012850:three_prime_UTR 70.0%
ACCCGAGGAGGAGGAGGAGG+AGG - chr1_1:19578422-19578441 Msa0012850:three_prime_UTR 70.0%
CGAGGAGGAGGAGGAGGAGG+AGG - chr1_1:19578425-19578444 Msa0012850:three_prime_UTR 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr1_1:19578428-19578447 Msa0012850:three_prime_UTR 70.0%
GGAGCCCGGAGCCGTTGTTC+TGG - chr1_1:19582825-19582844 Msa0012850:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 19578063 19585625 19578063 ID=Msa0012850;Name=Msa0012850
chr1_1 mRNA 19578063 19585625 19578063 ID=Msa0012850-mRNA-1;Parent=Msa0012850;Name=Msa0012850-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0.71|0.75|1|0.85|0.75|8|450|412
chr1_1 exon 19578063 19578597 19578063 ID=Msa0012850-mRNA-1:exon:7083;Parent=Msa0012850-mRNA-1
chr1_1 exon 19578983 19579122 19578983 ID=Msa0012850-mRNA-1:exon:7082;Parent=Msa0012850-mRNA-1
chr1_1 exon 19579230 19579337 19579230 ID=Msa0012850-mRNA-1:exon:7081;Parent=Msa0012850-mRNA-1
chr1_1 exon 19579589 19579661 19579589 ID=Msa0012850-mRNA-1:exon:7080;Parent=Msa0012850-mRNA-1
chr1_1 exon 19579790 19579948 19579790 ID=Msa0012850-mRNA-1:exon:7079;Parent=Msa0012850-mRNA-1
chr1_1 exon 19581455 19581600 19581455 ID=Msa0012850-mRNA-1:exon:7078;Parent=Msa0012850-mRNA-1
chr1_1 exon 19582598 19582687 19582598 ID=Msa0012850-mRNA-1:exon:7077;Parent=Msa0012850-mRNA-1
chr1_1 exon 19585188 19585625 19585188 ID=Msa0012850-mRNA-1:exon:7076;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19585188 19585625 19585188 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19582598 19582687 19582598 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19581455 19581600 19581455 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19579790 19579948 19579790 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19579589 19579661 19579589 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19579230 19579337 19579230 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19578983 19579122 19578983 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 CDS 19578513 19578597 19578513 ID=Msa0012850-mRNA-1:cds;Parent=Msa0012850-mRNA-1
chr1_1 three_prime_UTR 19578063 19578512 19578063 ID=Msa0012850-mRNA-1:three_prime_utr;Parent=Msa0012850-mRNA-1
Gene Sequence

>Msa0012850

ATGAAATCCTTAAGAATCTTCAAAAACACTCTCTATTCAACTTCTTCACCCAAAATCACCACCACCACAACCACCACAATCTTCCGCGCTTTCTTCTCCGCCGAACCCCTCACACCGGAACCCGATCCTCAACCCGAACATTCAGACGCTACCTTCGATAGTTTTCACTACGAACTCCCAATTCTCAACAACAACGACGAAGAAAAGCCGAAGGTGACGTGGAATAAGAAATACCGAGACCGGACGGATAAACTTGTGTTCGGCGATGAGCCGAAGGGGAGAGTGAAGTTTAAGGAGGAAGAGGAGGAGAGGAAAACTAAGGCGCTTGAGAAGGCTTTGTTGGAAGCTGCGTTGAGTAAACCCGAGGAGGAGGAGGAGGAGGAGGAGGAAGATGAAGATGTCGGTGTTGTGAATGAGGAGGATCAGAAGTCTTTGTCTGTTGGAACAAAGGTGGCGGCTGTTTCACGCAAGACAAACACCACAACTCATGAAGTTGTGGGCGTGTTGACTAAAGGAGACACCCAAATTTGTTTTTTTGATACGCCAGGGCTTGTGCTAAATTGTAGTGGATTCCCTTATAAGGATGCCAAGGCTCGTGTTGAAAGTGCTTGGAGTTCAGTCAATCTCTATGAAGTGCTCATAGTCATTTTTGATGTCCATAGACATATTACTAGGCCTGATTCAAGAGTTGTAAAACTGATCAAGCGAATGGGAGAACGGTCCATTCCAAATCAAAAGCGAGTTTTGTGTATGAATAAGATTGATTTAGTAGAGAAAAAGAAAGACTTAACAAAGGTTGCTGAAGAATTCGAAGATCTTCCTGGATTTGAAAGGCGTTTCATGATATCTGGAATGAAGGGGGCTGGCGTAAAAGATTTGACTCAGTTCTTGATGGAGCAGGCATGTGCAGTAGAACGGCCCTGGGAAGAAGATCCATTTACCATGACCGAGGAAGTTATGAAAATGATATCATTAGAAGTTGTGCGTGAAAGGTTGTTGGACCATGTACATCAGGAAATTCCATACGATATTGAACATAGGTTGATTGACTGGAAAGAGTTGCGAGATGGTTCTCTTAGGATTGAACAGCACTTTCTCACTAACAAATTAGGCCAACTCAAGATTCTTGTGGGGAAGCGTGGCTCAAAAATTGGGAGAATAGGAATAGAAGCTAATGAAGAGCTAAGGACCATTTTCAAAAAGCAAGTGCATCTAGTTCTTCAGGTTAAGCTCAAATGA
Protein sequence

>Msa0012850

MKSLRIFKNTLYSTSSPKITTTTTTTIFRAFFSAEPLTPEPDPQPEHSDATFDSFHYELPILNNNDEEKPKVTWNKKYRDRTDKLVFGDEPKGRVKFKEEEEERKTKALEKALLEAALSKPEEEEEEEEEDEDVGVVNEEDQKSLSVGTKVAAVSRKTNTTTHEVVGVLTKGDTQICFFDTPGLVLNCSGFPYKDAKARVESAWSSVNLYEVLIVIFDVHRHITRPDSRVVKLIKRMGERSIPNQKRVLCMNKIDLVEKKKDLTKVAEEFEDLPGFERRFMISGMKGAGVKDLTQFLMEQACAVERPWEEDPFTMTEEVMKMISLEVVRERLLDHVHQEIPYDIEHRLIDWKELRDGSLRIEQHFLTNKLGQLKILVGKRGSKIGRIGIEANEELRTIFKKQVHLVLQVKLK*