Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001480 | XP_003604069.1 | 92.773 | 761 | 21 | 3 | 1 | 727 | 40 | 800 | 0.0 | 1438 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001480 | sp|Q8VXX4|RFC3_ARATH | 29.708 | 377 | 197 | 11 | 380 | 719 | 2 | 347 | 2.36e-37 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001480 | Msa0380330 | 0.976854 | 1.254872e-142 | -8.615850e-47 |
| Msa0001480 | Msa0776150 | 0.812530 | 4.047071e-51 | -8.615850e-47 |
| Msa0001480 | Msa1365680 | 0.962213 | 1.305338e-120 | -8.615850e-47 |
| Msa0001480 | Msa1376620 | 0.957056 | 6.794070e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001480 | MtrunA17_Chr3g0145801 | 92.773 | 761 | 21 | 3 | 1 | 727 | 40 | 800 | 0.0 | 1438 |
| Msa0001480 | MtrunA17_Chr6g0460841 | 28.117 | 377 | 203 | 8 | 380 | 719 | 2 | 347 | 1.10e-36 | 141 |
| Msa0001480 | MtrunA17_Chr6g0478631 | 27.851 | 377 | 204 | 8 | 380 | 719 | 2 | 347 | 8.52e-36 | 139 |
| Msa0001480 | MtrunA17_Chr5g0404521 | 31.276 | 243 | 140 | 6 | 380 | 613 | 413 | 637 | 1.25e-28 | 122 |
| Msa0001480 | MtrunA17_Chr4g0057341 | 22.997 | 287 | 185 | 6 | 377 | 662 | 13 | 264 | 1.67e-17 | 84.7 |
| Msa0001480 | MtrunA17_Chr3g0124791 | 21.642 | 268 | 174 | 7 | 353 | 615 | 2 | 238 | 1.73e-14 | 75.9 |
| Msa0001480 | MtrunA17_Chr3g0125031 | 27.160 | 243 | 139 | 10 | 381 | 616 | 11 | 222 | 1.92e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001480 | AT5G27740.1 | 29.708 | 377 | 197 | 11 | 380 | 719 | 2 | 347 | 2.40e-38 | 146 |
| Msa0001480 | AT1G63160.1 | 24.280 | 243 | 150 | 5 | 374 | 615 | 10 | 219 | 4.83e-17 | 83.6 |
| Msa0001480 | AT1G21690.1 | 25.207 | 242 | 145 | 8 | 381 | 616 | 11 | 222 | 2.36e-13 | 72.4 |
| Msa0001480 | AT1G21690.3 | 25.207 | 242 | 145 | 8 | 381 | 616 | 11 | 222 | 5.01e-13 | 71.6 |
| Msa0001480 | AT1G21690.2 | 25.207 | 242 | 133 | 9 | 381 | 616 | 11 | 210 | 5.29e-12 | 68.2 |
Find 199 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTGTCAAGATTT+TGG | 0.119205 | 1_1:+3168569 | Msa0001480:intron |
| CAATATCTTGGGCTGGTATT+TGG | 0.178587 | 1_1:-3166586 | None:intergenic |
| ATGGATCTCTTTCCTACATT+TGG | 0.188482 | 1_1:-3166849 | None:intergenic |
| TGGATCTCTTTCCTACATTT+GGG | 0.199080 | 1_1:-3166848 | None:intergenic |
| CTCTTGTCATTGATGCCTCT+TGG | 0.266642 | 1_1:+3165788 | Msa0001480:CDS |
| ATGAGTTGGTGGTTGGGTGG+TGG | 0.280081 | 1_1:-3165956 | None:intergenic |
| TAATAGTAAAGAAATGTTAT+TGG | 0.286902 | 1_1:+3165366 | Msa0001480:five_prime_UTR |
| GCTATGCTTCGGGAGGTATT+TGG | 0.294451 | 1_1:+3166879 | Msa0001480:CDS |
| ACCATGAGTGATTGATCTTC+TGG | 0.294994 | 1_1:-3166000 | None:intergenic |
| CAAAGGCTTCCCTTGGATAT+CGG | 0.304910 | 1_1:-3166070 | None:intergenic |
| CCGTCAAGCCATTCGTTCAT+TGG | 0.306778 | 1_1:+3168671 | Msa0001480:CDS |
| TGAGTTGGTGGTTGGGTGGT+GGG | 0.307171 | 1_1:-3165955 | None:intergenic |
| AAATGCTGACAAAACAGATT+TGG | 0.311379 | 1_1:+3166314 | Msa0001480:CDS |
| ATCGCAGCATTGGAATTTCT+TGG | 0.318413 | 1_1:+3165316 | Msa0001480:five_prime_UTR |
| AGTTGGTGGTTGGGTGGTGG+GGG | 0.320610 | 1_1:-3165953 | None:intergenic |
| CAAATACCAGCCCAAGATAT+TGG | 0.320785 | 1_1:+3166587 | Msa0001480:CDS |
| AAACAGTCAAATAAGTTGTA+TGG | 0.322845 | 1_1:+3171387 | Msa0001480:three_prime_UTR |
| CGACTCAAGTCCATACTATA+GGG | 0.325434 | 1_1:+3165861 | Msa0001480:CDS |
| GAGTTGGTGGTTGGGTGGTG+GGG | 0.334834 | 1_1:-3165954 | None:intergenic |
| GCCTCCTCTAAAGTTGCTTC+TGG | 0.335630 | 1_1:-3166030 | None:intergenic |
| TCTTGTCATTGATGCCTCTT+GGG | 0.347119 | 1_1:+3165789 | Msa0001480:CDS |
| AAGAGGAACTCAGAGACTTT+TGG | 0.354701 | 1_1:+3166451 | Msa0001480:CDS |
| CATGATACGGGCTATGCTTC+GGG | 0.356432 | 1_1:+3166869 | Msa0001480:CDS |
| AGTGTACTCCTTGCCAAGTT+TGG | 0.357320 | 1_1:-3170625 | None:intergenic |
| GATGAAGTCTTCCAATATCT+TGG | 0.360309 | 1_1:-3166598 | None:intergenic |
| ACGACTCAAGTCCATACTAT+AGG | 0.362105 | 1_1:+3165860 | Msa0001480:CDS |
| ATTTGTAAACTCACTTGTTT+CGG | 0.362448 | 1_1:-3168704 | None:intergenic |
| TGGCTGGTAGAAAAGTATAA+AGG | 0.363077 | 1_1:+3167957 | Msa0001480:CDS |
| GCAATAAGACCCCTATAGTA+TGG | 0.367889 | 1_1:-3165871 | None:intergenic |
| TTATGAATCAGAAACTATTT+CGG | 0.367912 | 1_1:+3166182 | Msa0001480:CDS |
| GGAGAGAGTAATTTCAAATT+CGG | 0.372169 | 1_1:+3166269 | Msa0001480:CDS |
| ATCAATGACAAGAGAATAAT+CGG | 0.374376 | 1_1:-3165779 | None:intergenic |
| TTGCTGCATATATAGGTTAA+AGG | 0.377368 | 1_1:+3166789 | Msa0001480:intron |
| AACTCACTTGTTTCGGTAAG+TGG | 0.381466 | 1_1:-3168697 | None:intergenic |
| GTGTGACGATGTTGTGTTGT+TGG | 0.396848 | 1_1:+3166218 | Msa0001480:CDS |
| AATGCTGACAAAACAGATTT+GGG | 0.399805 | 1_1:+3166315 | Msa0001480:CDS |
| TGTGATTGTTGAGTTATTCA+AGG | 0.403241 | 1_1:+3167714 | Msa0001480:CDS |
| CAACAGATTGCTTCCGAGTC+GGG | 0.407390 | 1_1:-3165453 | None:intergenic |
| AAGAAATGTTATTGGTTGAA+TGG | 0.408855 | 1_1:+3165374 | Msa0001480:five_prime_UTR |
| TGCTCAGAGGTTACCAAACT+TGG | 0.415261 | 1_1:+3170612 | Msa0001480:CDS |
| GGATGAGTTGTGATGGGGAT+GGG | 0.415651 | 1_1:-3165824 | None:intergenic |
| TATTGTTGTTGTCCTCCTCT+TGG | 0.415757 | 1_1:-3165687 | None:intergenic |
| TTGTGATGGGGATGGGGATG+AGG | 0.417832 | 1_1:-3165817 | None:intergenic |
| CCATGATACGGGCTATGCTT+CGG | 0.425412 | 1_1:+3166868 | Msa0001480:CDS |
| AAAGGCTTCCCTTGGATATC+GGG | 0.427048 | 1_1:-3166069 | None:intergenic |
| GATCATGTGTAACTTATTGC+TGG | 0.430474 | 1_1:+3171272 | Msa0001480:exon |
| ATATAAAGACTTCAGCTTGA+AGG | 0.430997 | 1_1:+3167049 | Msa0001480:CDS |
| TGAGTGACCTGTTGGGTTGA+TGG | 0.433348 | 1_1:-3168065 | None:intergenic |
| TTCTGAACAAACAGTGTCAT+TGG | 0.436278 | 1_1:+3166494 | Msa0001480:CDS |
| GTCGTCATCACAAGCAACTT+TGG | 0.439281 | 1_1:+3166107 | Msa0001480:CDS |
| TTGAAGGCGGGAAGCCTTTG+AGG | 0.442165 | 1_1:+3166154 | Msa0001480:CDS |
| ATGAACTACTTAAAAGTTGA+AGG | 0.442773 | 1_1:+3170834 | Msa0001480:CDS |
| TTTGTTGCTCTGATGAATCA+AGG | 0.444944 | 1_1:+3167997 | Msa0001480:CDS |
| TTGAGGGAGAAGAGAGAGGA+GGG | 0.450193 | 1_1:-3165913 | None:intergenic |
| GAATATATTGTACAAGAAGA+AGG | 0.452115 | 1_1:+3168591 | Msa0001480:CDS |
| AGAACCAGAAGCAACTTTAG+AGG | 0.456198 | 1_1:+3166026 | Msa0001480:CDS |
| GGCTGGTAGAAAAGTATAAA+GGG | 0.456452 | 1_1:+3167958 | Msa0001480:CDS |
| GAGTTATTCAAGGAAACATA+TGG | 0.461638 | 1_1:+3167724 | Msa0001480:CDS |
| GGGTATGGAGGAGATGGAAT+TGG | 0.462012 | 1_1:+3166335 | Msa0001480:CDS |
| GATGAGTTGTGATGGGGATG+GGG | 0.465792 | 1_1:-3165823 | None:intergenic |
| ATATCCAAGGGAAGCCTTTG+AGG | 0.469512 | 1_1:+3166073 | Msa0001480:CDS |
| AGATTTGGGTATGGAGGAGA+TGG | 0.470166 | 1_1:+3166329 | Msa0001480:CDS |
| CTCATCACCATCAACCCAAC+AGG | 0.472528 | 1_1:+3168058 | Msa0001480:CDS |
| GGCAGTGAAATCAAATTTGA+AGG | 0.474032 | 1_1:+3170738 | Msa0001480:CDS |
| TCCTCCTGACTTTATTTACA+AGG | 0.475826 | 1_1:+3170438 | Msa0001480:CDS |
| TAACCCTCAAAGGCTTCCCT+TGG | 0.476042 | 1_1:-3166077 | None:intergenic |
| GATTCATAATTAACCCTCAA+AGG | 0.476710 | 1_1:-3166168 | None:intergenic |
| ATCGGTGAGACCCTTGTAGT+AGG | 0.478975 | 1_1:-3165635 | None:intergenic |
| TATCCAAGGGAAGCCTTTGA+GGG | 0.480465 | 1_1:+3166074 | Msa0001480:CDS |
| GAGGGAGAAGAGAGAGGAGG+GGG | 0.482978 | 1_1:-3165911 | None:intergenic |
| GGATGTCACCATCGCAGCAT+TGG | 0.488463 | 1_1:+3165306 | Msa0001480:five_prime_UTR |
| ATGAAGTCTTCCAATATCTT+GGG | 0.488486 | 1_1:-3166597 | None:intergenic |
| ATGGGGATGGGGATGAGGAG+TGG | 0.489564 | 1_1:-3165812 | None:intergenic |
| GATTGCTTCCGAGTCGGGCT+AGG | 0.491083 | 1_1:-3165448 | None:intergenic |
| TTCTGATAGTCCCTACTACA+AGG | 0.493874 | 1_1:+3165624 | Msa0001480:CDS |
| TTGAGTCGTGATAACAAGAA+AGG | 0.495047 | 1_1:-3165846 | None:intergenic |
| TCGGTAAGACCTTTGTAGTA+AGG | 0.495947 | 1_1:-3165760 | None:intergenic |
| AGCATAAGAGAAAGCCTTTG+AGG | 0.496667 | 1_1:+3166247 | Msa0001480:CDS |
| AGAGTCGTGCATCACAAGTT+GGG | 0.497633 | 1_1:+3166388 | Msa0001480:CDS |
| CCGAAGCATAGCCCGTATCA+TGG | 0.498734 | 1_1:-3166868 | None:intergenic |
| CCAATGAACGAATGGCTTGA+CGG | 0.502701 | 1_1:-3168671 | None:intergenic |
| AATACCTTGTAAATAAAGTC+AGG | 0.507334 | 1_1:-3170442 | None:intergenic |
| GGATCTCTTTCCTACATTTG+GGG | 0.507455 | 1_1:-3166847 | None:intergenic |
| GATCTCTTTCCTACATTTGG+GGG | 0.509171 | 1_1:-3166846 | None:intergenic |
| TCCTCTTGGTATTCTTCATG+AGG | 0.509922 | 1_1:-3165673 | None:intergenic |
| TTGACATGGATAGGGAGAAA+TGG | 0.509928 | 1_1:+3167609 | Msa0001480:intron |
| AGAAAGGGATGAGTTGTGAT+GGG | 0.510848 | 1_1:-3165830 | None:intergenic |
| GAGAGTCGTGCATCACAAGT+TGG | 0.514323 | 1_1:+3166387 | Msa0001480:CDS |
| GGACAGTGGTGCAATATGAT+TGG | 0.515250 | 1_1:-3168031 | None:intergenic |
| TTATAGCAAAATTCATGAGC+TGG | 0.516501 | 1_1:+3171225 | Msa0001480:CDS |
| AAGAAATTCCAATGCTGCGA+TGG | 0.521260 | 1_1:-3165314 | None:intergenic |
| AACAGTCAAATAAGTTGTAT+GGG | 0.523167 | 1_1:+3171388 | Msa0001480:three_prime_UTR |
| GATGTTGAGGGAGAAGAGAG+AGG | 0.523222 | 1_1:-3165917 | None:intergenic |
| TAGGAAAGAGATCCATGATA+CGG | 0.524030 | 1_1:+3166856 | Msa0001480:CDS |
| AAAATCATGAGTTGGTGGTT+GGG | 0.525199 | 1_1:-3165962 | None:intergenic |
| ACAAGCAACTTTGGAGGAGA+TGG | 0.527359 | 1_1:+3166116 | Msa0001480:CDS |
| TGTCTCGTTCCGCGCGGAGG+AGG | 0.532527 | 1_1:+3165512 | Msa0001480:CDS |
| ATTTGGTGCTGACGGAGTGC+AGG | 0.532697 | 1_1:+3166896 | Msa0001480:CDS |
| TGAAGGCGGGAAGCCTTTGA+GGG | 0.535197 | 1_1:+3166155 | Msa0001480:CDS |
| GGGATGAGTTGTGATGGGGA+TGG | 0.535474 | 1_1:-3165825 | None:intergenic |
| AAGAAAGGGATGAGTTGTGA+TGG | 0.535971 | 1_1:-3165831 | None:intergenic |
| CGGGAGGTATTTGGTGCTGA+CGG | 0.536087 | 1_1:+3166888 | Msa0001480:CDS |
| CAAAATCATGAGTTGGTGGT+TGG | 0.537258 | 1_1:-3165963 | None:intergenic |
| GAAATTACTCTCTCCCTCAA+AGG | 0.540067 | 1_1:-3166261 | None:intergenic |
| GGAGGAAGAACAGTGGTCAC+TGG | 0.540307 | 1_1:+3165530 | Msa0001480:CDS |
| ATTCAAGGAAACATATGGTA+AGG | 0.541100 | 1_1:+3167729 | Msa0001480:CDS |
| TGTGTAACTTATTGCTGGAA+TGG | 0.541736 | 1_1:+3171277 | Msa0001480:exon |
| GCATAAGAGAAAGCCTTTGA+GGG | 0.545630 | 1_1:+3166248 | Msa0001480:CDS |
| CGAGACATATTGTGGCGAGT+AGG | 0.547083 | 1_1:-3165496 | None:intergenic |
| TCGGTGAGACCCTTGTAGTA+GGG | 0.547814 | 1_1:-3165634 | None:intergenic |
| CTGCATATATAGGTTAAAGG+TGG | 0.548666 | 1_1:+3166792 | Msa0001480:intron |
| GTAAATCTCTCAGAAGCAAA+GGG | 0.548782 | 1_1:+3167679 | Msa0001480:CDS |
| TGAGTCGTGATAACAAGAAA+GGG | 0.550864 | 1_1:-3165845 | None:intergenic |
| GGTGGTTGTCATCAATATCA+TGG | 0.553880 | 1_1:+3165551 | Msa0001480:CDS |
| GGTAAATCTCTCAGAAGCAA+AGG | 0.556549 | 1_1:+3167678 | Msa0001480:CDS |
| GGTATTGAAATTGATGTTGA+GGG | 0.558033 | 1_1:-3165929 | None:intergenic |
| AAGACAACAAAATCATGAGT+TGG | 0.558224 | 1_1:-3165970 | None:intergenic |
| AATCGGTGTTGTATATAAAG+TGG | 0.559508 | 1_1:+3167937 | Msa0001480:CDS |
| GACGGATTGTTAACCCTCAA+AGG | 0.560794 | 1_1:-3166087 | None:intergenic |
| ATATAGGTTAAAGGTGGGTG+TGG | 0.561146 | 1_1:+3166798 | Msa0001480:intron |
| AGTCTTCCAATATCTTGGGC+TGG | 0.561256 | 1_1:-3166593 | None:intergenic |
| AGGAATAGCAAGAGATTGAT+CGG | 0.562340 | 1_1:-3165653 | None:intergenic |
| GGAGAAGCTATCGTTAGAAT+CGG | 0.563580 | 1_1:+3167920 | Msa0001480:CDS |
| AGCACTTCAGCTGAAAGCAT+TGG | 0.564498 | 1_1:+3166635 | Msa0001480:CDS |
| TGGTATTGAAATTGATGTTG+AGG | 0.568829 | 1_1:-3165930 | None:intergenic |
| GCGCGGAACGAGACATATTG+TGG | 0.569690 | 1_1:-3165504 | None:intergenic |
| TTCTTCAACTTATGCTCACA+AGG | 0.572262 | 1_1:-3166522 | None:intergenic |
| TTTGTAGTAAGGACTACTGT+GGG | 0.575498 | 1_1:-3165749 | None:intergenic |
| AGAGACAACGGATTTGAAAG+AGG | 0.575889 | 1_1:+3166434 | Msa0001480:CDS |
| TGAGGGAGAAGAGAGAGGAG+GGG | 0.578087 | 1_1:-3165912 | None:intergenic |
| GATGCACGACTCTCTCTCAA+TGG | 0.579259 | 1_1:-3166378 | None:intergenic |
| TTGGAAGCTCCGACTAGAGA+CGG | 0.579785 | 1_1:+3165335 | Msa0001480:five_prime_UTR |
| AATATCATGGATGAAGAAAG+AGG | 0.580077 | 1_1:+3165564 | Msa0001480:CDS |
| GGTGTTGTATATAAAGTGGC+TGG | 0.580355 | 1_1:+3167941 | Msa0001480:CDS |
| CCAACAGATTGCTTCCGAGT+CGG | 0.580520 | 1_1:-3165454 | None:intergenic |
| TAGTGAGTGATCAACTAGAC+TGG | 0.585940 | 1_1:-3170589 | None:intergenic |
| TCCAGAAGATCAATCACTCA+TGG | 0.586525 | 1_1:+3165999 | Msa0001480:CDS |
| TTGATCCATCCCGATATCCA+AGG | 0.587536 | 1_1:+3166060 | Msa0001480:CDS |
| TCAAGCCATTCGTTCATTGG+AGG | 0.587776 | 1_1:+3168674 | Msa0001480:CDS |
| CAAAACAGATTTGGGTATGG+AGG | 0.589902 | 1_1:+3166323 | Msa0001480:CDS |
| GGGGATGATGAAAGGAGGAT+AGG | 0.590039 | 1_1:-3165727 | None:intergenic |
| GTTGAGGGAGAAGAGAGAGG+AGG | 0.592435 | 1_1:-3165914 | None:intergenic |
| TGCATATATAGGTTAAAGGT+GGG | 0.594420 | 1_1:+3166793 | Msa0001480:intron |
| TTGAAGAACACAGCTGAGGA+AGG | 0.596267 | 1_1:+3166537 | Msa0001480:CDS |
| GAAATGTGTATGACTATCTG+TGG | 0.596972 | 1_1:+3166559 | Msa0001480:CDS |
| CATTATGCTCAAAACAAACA+AGG | 0.599265 | 1_1:+3170768 | Msa0001480:CDS |
| ACGGTGATGATGTTGAAGGC+GGG | 0.600422 | 1_1:+3166142 | Msa0001480:CDS |
| ATACTTGTGCCGTCTCTAGT+CGG | 0.602090 | 1_1:-3165344 | None:intergenic |
| ATCATGAGTTGGTGGTTGGG+TGG | 0.602166 | 1_1:-3165959 | None:intergenic |
| AGCAACTTTAGAGGAGGCGA+TGG | 0.602645 | 1_1:+3166035 | Msa0001480:CDS |
| AGGAAAGAGATCCATGATAC+GGG | 0.602954 | 1_1:+3166857 | Msa0001480:CDS |
| TCTGATAGTCCCTACTACAA+GGG | 0.603443 | 1_1:+3165625 | Msa0001480:CDS |
| AGAGGTTACCAAACTTGGCA+AGG | 0.609398 | 1_1:+3170617 | Msa0001480:CDS |
| ACAACAAAATCATGAGTTGG+TGG | 0.611305 | 1_1:-3165967 | None:intergenic |
| GAAATCACTTCATCATGTTG+AGG | 0.611317 | 1_1:+3167657 | Msa0001480:CDS |
| GTCATCACAAGCAACTTTGG+AGG | 0.613027 | 1_1:+3166110 | Msa0001480:CDS |
| TGAAAGTACCTAGCCCGACT+CGG | 0.614008 | 1_1:+3165440 | Msa0001480:CDS |
| AGTGGCCTCCAATGAACGAA+TGG | 0.616528 | 1_1:-3168679 | None:intergenic |
| CCGACTCGGAAGCAATCTGT+TGG | 0.618079 | 1_1:+3165454 | Msa0001480:CDS |
| GTGGTGCAATATGATTGGAT+TGG | 0.622821 | 1_1:-3168026 | None:intergenic |
| CACAGTAGTCCTTACTACAA+AGG | 0.624786 | 1_1:+3165751 | Msa0001480:CDS |
| ACTAATAAATACAGAGACAA+CGG | 0.628311 | 1_1:+3166422 | Msa0001480:CDS |
| GACGACGGTGATGATGTTGA+AGG | 0.628956 | 1_1:+3166138 | Msa0001480:CDS |
| AAGGAATCAAATTATCACAT+GGG | 0.629209 | 1_1:+3168610 | Msa0001480:CDS |
| GAAGGAATCAAATTATCACA+TGG | 0.630443 | 1_1:+3168609 | Msa0001480:CDS |
| TGACAAAACAGATTTGGGTA+TGG | 0.631514 | 1_1:+3166320 | Msa0001480:CDS |
| GAAATGCTGAGTGACCTGTT+GGG | 0.632320 | 1_1:-3168072 | None:intergenic |
| GCTTCCCTTGGATATCGGGA+TGG | 0.632618 | 1_1:-3166065 | None:intergenic |
| TGTAGTAAGGACTACTGTGG+GGG | 0.634101 | 1_1:-3165747 | None:intergenic |
| ACCAGAAGCAACTTTAGAGG+AGG | 0.637183 | 1_1:+3166029 | Msa0001480:CDS |
| GACGGTGATGATGTTGAAGG+CGG | 0.638353 | 1_1:+3166141 | Msa0001480:CDS |
| GACTCAAGTCCATACTATAG+GGG | 0.641597 | 1_1:+3165862 | Msa0001480:CDS |
| AAAGTTGCTTGTGATGACGA+CGG | 0.645589 | 1_1:-3166105 | None:intergenic |
| GGGATGAGGAGTGGCCCAAG+AGG | 0.649717 | 1_1:-3165803 | None:intergenic |
| AGTAGGGACTATCAGAAGAG+AGG | 0.651405 | 1_1:-3165618 | None:intergenic |
| ATATGTCTCGTTCCGCGCGG+AGG | 0.656162 | 1_1:+3165509 | Msa0001480:CDS |
| GGAAGAACAGTGGTCACTGG+TGG | 0.659634 | 1_1:+3165533 | Msa0001480:CDS |
| TGATCCATCCCGATATCCAA+GGG | 0.663726 | 1_1:+3166061 | Msa0001480:CDS |
| TGGAATGGAGCATAGATAAG+TGG | 0.665023 | 1_1:+3171292 | Msa0001480:three_prime_UTR |
| TAAGTTGAAGAACACAGCTG+AGG | 0.667143 | 1_1:+3166533 | Msa0001480:CDS |
| ACCTTGTAAATAAAGTCAGG+AGG | 0.669479 | 1_1:-3170439 | None:intergenic |
| TGTAGCCCAGAAAACTGTCA+AGG | 0.671971 | 1_1:+3167772 | Msa0001480:CDS |
| TCATGAAGAATACCAAGAGG+AGG | 0.678825 | 1_1:+3165675 | Msa0001480:CDS |
| TCCTCATGAAGAATACCAAG+AGG | 0.686432 | 1_1:+3165672 | Msa0001480:CDS |
| GATACGGGCTATGCTTCGGG+AGG | 0.690586 | 1_1:+3166872 | Msa0001480:CDS |
| GGGTTGATGGTGATGAGAGG+CGG | 0.691251 | 1_1:-3168052 | None:intergenic |
| CTTTGTAGTAAGGACTACTG+TGG | 0.692211 | 1_1:-3165750 | None:intergenic |
| GTTGGGTTGATGGTGATGAG+AGG | 0.694957 | 1_1:-3168055 | None:intergenic |
| GAAAGGGATGAGTTGTGATG+GGG | 0.698999 | 1_1:-3165829 | None:intergenic |
| ACTTTGGAGGAGATGGACGA+CGG | 0.700638 | 1_1:+3166123 | Msa0001480:CDS |
| AAATGTGTATGACTATCTGT+GGG | 0.700875 | 1_1:+3166560 | Msa0001480:CDS |
| TGATCACTCACTATGCTCAG+AGG | 0.703091 | 1_1:+3170599 | Msa0001480:CDS |
| TTGTAGTAAGGACTACTGTG+GGG | 0.705466 | 1_1:-3165748 | None:intergenic |
| TGGTGATGAGAGGCGGACAG+TGG | 0.709052 | 1_1:-3168045 | None:intergenic |
| GCGCGGAGGAGGAAGAACAG+TGG | 0.710448 | 1_1:+3165523 | Msa0001480:CDS |
| ACTGTTCTTCCTCCTCCGCG+CGG | 0.716406 | 1_1:-3165521 | None:intergenic |
| GTAGTAAGGACTACTGTGGG+GGG | 0.727677 | 1_1:-3165746 | None:intergenic |
| TATGCTCAAAACAAACAAGG+AGG | 0.727720 | 1_1:+3170771 | Msa0001480:CDS |
| ACAATATGTCTCGTTCCGCG+CGG | 0.731066 | 1_1:+3165506 | Msa0001480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTTTTTTTTTTGT+TGG | + | chr1_1:3168354-3168373 | Msa0001480:intron | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | chr1_1:3169018-3169037 | Msa0001480:intron | 10.0% |
| !!! | CAAATTTTTTTTATAGTTTT+TGG | - | chr1_1:3169425-3169444 | None:intergenic | 10.0% |
| !!! | AAATAAAGTCTTATATTAAT+TGG | - | chr1_1:3170528-3170547 | None:intergenic | 10.0% |
| !! | TAATAGTAAAGAAATGTTAT+TGG | + | chr1_1:3165366-3165385 | Msa0001480:five_prime_UTR | 15.0% |
| !!! | TGTAATCATTTTATATTTGA+AGG | + | chr1_1:3166822-3166841 | Msa0001480:CDS | 15.0% |
| !! | AAACATATTAATTACTTGAT+TGG | - | chr1_1:3167841-3167860 | None:intergenic | 15.0% |
| !! | TATTATATGCAATTTATTGA+AGG | + | chr1_1:3168212-3168231 | Msa0001480:intron | 15.0% |
| !! | ATTATATGCAATTTATTGAA+GGG | + | chr1_1:3168213-3168232 | Msa0001480:intron | 15.0% |
| !!! | TTTTTAATAGAAGAACATTT+TGG | + | chr1_1:3168302-3168321 | Msa0001480:intron | 15.0% |
| !! | AATCATATAATATATGAAGT+TGG | + | chr1_1:3168423-3168442 | Msa0001480:intron | 15.0% |
| !! | GAAACAAAGTAAAAAAAAAA+AGG | - | chr1_1:3168878-3168897 | None:intergenic | 15.0% |
| !!! | ACTAATATTGCTTTTATTTT+AGG | + | chr1_1:3168941-3168960 | Msa0001480:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr1_1:3169016-3169035 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr1_1:3169017-3169036 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAATTGCA+GGG | - | chr1_1:3169077-3169096 | None:intergenic | 15.0% |
| !! | AAAACTATAAAAAAAATTGC+AGG | - | chr1_1:3169078-3169097 | None:intergenic | 15.0% |
| !!! | GCAATTTTTTTTATAGTTTT+TGG | + | chr1_1:3169078-3169097 | Msa0001480:intron | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | + | chr1_1:3169426-3169445 | Msa0001480:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | + | chr1_1:3169427-3169446 | Msa0001480:intron | 15.0% |
| !! | AACTATAAAAAATAAATTGC+AGG | + | chr1_1:3169488-3169507 | Msa0001480:intron | 15.0% |
| !! | ACTATAAAAAATAAATTGCA+GGG | + | chr1_1:3169489-3169508 | Msa0001480:intron | 15.0% |
| !! | ATAAAATAAAGGCTAAAATA+TGG | - | chr1_1:3169553-3169572 | None:intergenic | 15.0% |
| !!! | TTATTTATTTTGTATAATGC+AGG | + | chr1_1:3170075-3170094 | Msa0001480:intron | 15.0% |
| !! | ATAACAATACATAATGTAAT+AGG | + | chr1_1:3170368-3170387 | Msa0001480:intron | 15.0% |
| !!! | ATAAGACTTTATTTATATCT+TGG | + | chr1_1:3170534-3170553 | Msa0001480:intron | 15.0% |
| !!! | TTTTCTTTTGCATTTAAATA+TGG | + | chr1_1:3170975-3170994 | Msa0001480:intron | 15.0% |
| !!! | ATTTTAACTAATACATTTTG+TGG | - | chr1_1:3171023-3171042 | None:intergenic | 15.0% |
| !! | TTATGAATCAGAAACTATTT+CGG | + | chr1_1:3166182-3166201 | Msa0001480:CDS | 20.0% |
| !! | GAAATTATATTACCTATGTT+GGG | - | chr1_1:3166761-3166780 | None:intergenic | 20.0% |
| !! | AGAAATTATATTACCTATGT+TGG | - | chr1_1:3166762-3166781 | None:intergenic | 20.0% |
| !!! | TTTTTAATCAATTTGCTTGA+TGG | + | chr1_1:3167106-3167125 | Msa0001480:intron | 20.0% |
| !!! | AGTTATGATTTTTCACTATA+CGG | + | chr1_1:3167221-3167240 | Msa0001480:intron | 20.0% |
| !! | TCCATACAAAATAACAATAT+TGG | - | chr1_1:3167818-3167837 | None:intergenic | 20.0% |
| !!! | AAAAGCAATAATTTTGTATG+AGG | + | chr1_1:3167896-3167915 | Msa0001480:intron | 20.0% |
| !!! | TCAAATTTTTATTTCCTCAT+AGG | - | chr1_1:3168450-3168469 | None:intergenic | 20.0% |
| !!! | TATCCTGAATGTTAATTTTT+TGG | + | chr1_1:3168729-3168748 | Msa0001480:intron | 20.0% |
| !!! | AATTATCGAAAGTTGTTTTA+AGG | - | chr1_1:3168825-3168844 | None:intergenic | 20.0% |
| !!! | AACTTTCGATAATTCTTTTT+CGG | + | chr1_1:3168831-3168850 | Msa0001480:intron | 20.0% |
| !!! | CAAAAACAAAATTTTTTGCA+GGG | - | chr1_1:3169105-3169124 | None:intergenic | 20.0% |
| !!! | TTCAAAAACAAAAATTTTGC+AGG | + | chr1_1:3169334-3169353 | Msa0001480:intron | 20.0% |
| !!! | TCAAAAACAAAAATTTTGCA+GGG | + | chr1_1:3169335-3169354 | Msa0001480:intron | 20.0% |
| !!! | ACTGTACTAAATTGATTTAA+AGG | - | chr1_1:3169625-3169644 | None:intergenic | 20.0% |
| !!! | TTGTTTAATCTCTAAAAGAA+TGG | + | chr1_1:3169734-3169753 | Msa0001480:intron | 20.0% |
| !! | TCTAATATTGAAAATCTGTT+TGG | - | chr1_1:3169829-3169848 | None:intergenic | 20.0% |
| !! | GAAAAATGTATGAGTTTAAA+AGG | + | chr1_1:3169849-3169868 | Msa0001480:intron | 20.0% |
| !! | CACTTGAGTATATAATAATA+AGG | - | chr1_1:3170054-3170073 | None:intergenic | 20.0% |
| !! | TAAAAAAATACTTCTACATC+AGG | - | chr1_1:3170250-3170269 | None:intergenic | 20.0% |
| !!! | AAGTATTTTTTTAGTATCGT+CGG | + | chr1_1:3170257-3170276 | Msa0001480:intron | 20.0% |
| !! | GGATTAAATACTAAAATAAG+AGG | - | chr1_1:3170871-3170890 | None:intergenic | 20.0% |
| !! | AACTATTGTGAATACTAAAA+AGG | - | chr1_1:3170892-3170911 | None:intergenic | 20.0% |
| !!! | AACAATTTAGTTCTCATTTT+TGG | + | chr1_1:3171159-3171178 | Msa0001480:intron | 20.0% |
| !!! | ACAATTTAGTTCTCATTTTT+GGG | + | chr1_1:3171160-3171179 | Msa0001480:intron | 20.0% |
| !! | CAAAAACACAAAATATCTTA+GGG | - | chr1_1:3171367-3171386 | None:intergenic | 20.0% |
| !! | TCAAAAACACAAAATATCTT+AGG | - | chr1_1:3171368-3171387 | None:intergenic | 20.0% |
| !! | AAGAAATGTTATTGGTTGAA+TGG | + | chr1_1:3165374-3165393 | Msa0001480:five_prime_UTR | 25.0% |
| ! | ATCAATGACAAGAGAATAAT+CGG | - | chr1_1:3165782-3165801 | None:intergenic | 25.0% |
| ! | ACTAATAAATACAGAGACAA+CGG | + | chr1_1:3166422-3166441 | Msa0001480:CDS | 25.0% |
| ! | TTTGTAATTGCTGCATATAT+AGG | + | chr1_1:3166782-3166801 | Msa0001480:intron | 25.0% |
| ! | GCTAAAAATAGTAGAATACA+AGG | - | chr1_1:3166944-3166963 | None:intergenic | 25.0% |
| ! | ATGTTTATGTCTGTGTATAT+AGG | + | chr1_1:3166964-3166983 | Msa0001480:intron | 25.0% |
| !! | ATTTTTCCTTTGCTTCTTAA+TGG | + | chr1_1:3167012-3167031 | Msa0001480:intron | 25.0% |
| ! | TTAAAAAAGAGAAGATGCAA+TGG | - | chr1_1:3167093-3167112 | None:intergenic | 25.0% |
| ! | GTATCTAATAAACGAACAAA+TGG | - | chr1_1:3167370-3167389 | None:intergenic | 25.0% |
| ! | TCGTTTATTAGATACTAGTT+TGG | + | chr1_1:3167375-3167394 | Msa0001480:intron | 25.0% |
| !!! | GCCAATATTGTTATTTTGTA+TGG | + | chr1_1:3167814-3167833 | Msa0001480:intron | 25.0% |
| ! | AAATTGTATGATTAGAGGAA+AGG | - | chr1_1:3168108-3168127 | None:intergenic | 25.0% |
| ! | TGACGAAATTATAAGTGATT+AGG | - | chr1_1:3168158-3168177 | None:intergenic | 25.0% |
| !!! | AGAGTCATTTTTCGAATTAA+GGG | + | chr1_1:3168250-3168269 | Msa0001480:intron | 25.0% |
| ! | TCTTCTATTAAAAACGTTGT+TGG | - | chr1_1:3168296-3168315 | None:intergenic | 25.0% |
| !!! | AGTTCTAGTTACAGTTATTT+TGG | - | chr1_1:3168495-3168514 | None:intergenic | 25.0% |
| ! | CAAAAGGATGTTTATTCAAA+AGG | - | chr1_1:3168547-3168566 | None:intergenic | 25.0% |
| ! | TGACAATCTGTTTATTCAAA+AGG | - | chr1_1:3168563-3168582 | None:intergenic | 25.0% |
| !! | TAAACAGATTGTCAAGATTT+TGG | + | chr1_1:3168569-3168588 | Msa0001480:intron | 25.0% |
| ! | GAATATATTGTACAAGAAGA+AGG | + | chr1_1:3168591-3168610 | Msa0001480:CDS | 25.0% |
| ! | AAGGAATCAAATTATCACAT+GGG | + | chr1_1:3168610-3168629 | Msa0001480:CDS | 25.0% |
| !!! | CAATCAAGAGTATAGTTTTA+AGG | + | chr1_1:3168634-3168653 | Msa0001480:CDS | 25.0% |
| ! | ATTTGTAAACTCACTTGTTT+CGG | - | chr1_1:3168707-3168726 | None:intergenic | 25.0% |
| ! | TGACCAAAAAATTAACATTC+AGG | - | chr1_1:3168735-3168754 | None:intergenic | 25.0% |
| ! | TTTAGGCTAAAACATTGTAT+TGG | + | chr1_1:3168958-3168977 | Msa0001480:intron | 25.0% |
| !!! | CCAAAAACAAAATTTTTTGC+AGG | - | chr1_1:3169106-3169125 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAAATTTTGTTTT+TGG | + | chr1_1:3169103-3169122 | Msa0001480:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | + | chr1_1:3169298-3169317 | Msa0001480:intron | 25.0% |
| ! | TAAAGGCTAAAATATGGTAT+TGG | - | chr1_1:3169547-3169566 | None:intergenic | 25.0% |
| ! | AGACTGAAGAGATAAAATAA+AGG | - | chr1_1:3169564-3169583 | None:intergenic | 25.0% |
| ! | TTAATAAAGGAGATAAGAGA+AGG | - | chr1_1:3169781-3169800 | None:intergenic | 25.0% |
| !!! | AGTTTGTTTTTTCATTCGAT+TGG | - | chr1_1:3169885-3169904 | None:intergenic | 25.0% |
| !!! | CTGTTCTTTTTTCATTCTAT+TGG | - | chr1_1:3169930-3169949 | None:intergenic | 25.0% |
| ! | TAGAATGAAAAAAGAACAGT+TGG | + | chr1_1:3169931-3169950 | Msa0001480:intron | 25.0% |
| !!! | ATGATTTAGTTTTAACTGGA+TGG | + | chr1_1:3170114-3170133 | Msa0001480:intron | 25.0% |
| !!! | TGATTTAGTTTTAACTGGAT+GGG | + | chr1_1:3170115-3170134 | Msa0001480:intron | 25.0% |
| ! | TTTCTTCACATAAACACTAA+TGG | + | chr1_1:3170325-3170344 | Msa0001480:intron | 25.0% |
| ! | AATACCTTGTAAATAAAGTC+AGG | - | chr1_1:3170445-3170464 | None:intergenic | 25.0% |
| !!! | TCTGTCGTGTTTATTTTTAA+AGG | + | chr1_1:3170472-3170491 | Msa0001480:intron | 25.0% |
| ! | TATATTAATTGGAACTGGAA+TGG | - | chr1_1:3170517-3170536 | None:intergenic | 25.0% |
| !! | AGTCTTATATTAATTGGAAC+TGG | - | chr1_1:3170522-3170541 | None:intergenic | 25.0% |
| !! | TCTGAAATGTTACAATCATA+TGG | - | chr1_1:3170716-3170735 | None:intergenic | 25.0% |
| ! | ATGATTGTAACATTTCAGAA+AGG | + | chr1_1:3170717-3170736 | Msa0001480:intron | 25.0% |
| ! | ATGAACTACTTAAAAGTTGA+AGG | + | chr1_1:3170834-3170853 | Msa0001480:CDS | 25.0% |
| ! | ATTCTCCACTTATTCAATTT+GGG | + | chr1_1:3171084-3171103 | Msa0001480:intron | 25.0% |
| ! | AAACAGTCAAATAAGTTGTA+TGG | + | chr1_1:3171387-3171406 | Msa0001480:three_prime_UTR | 25.0% |
| ! | AACAGTCAAATAAGTTGTAT+GGG | + | chr1_1:3171388-3171407 | Msa0001480:three_prime_UTR | 25.0% |
| AATATCATGGATGAAGAAAG+AGG | + | chr1_1:3165564-3165583 | Msa0001480:CDS | 30.0% | |
| ! | GGTATTGAAATTGATGTTGA+GGG | - | chr1_1:3165932-3165951 | None:intergenic | 30.0% |
| ! | TGGTATTGAAATTGATGTTG+AGG | - | chr1_1:3165933-3165952 | None:intergenic | 30.0% |
| AAGACAACAAAATCATGAGT+TGG | - | chr1_1:3165973-3165992 | None:intergenic | 30.0% | |
| GATTCATAATTAACCCTCAA+AGG | - | chr1_1:3166171-3166190 | None:intergenic | 30.0% | |
| GGAGAGAGTAATTTCAAATT+CGG | + | chr1_1:3166269-3166288 | Msa0001480:CDS | 30.0% | |
| AAATGCTGACAAAACAGATT+TGG | + | chr1_1:3166314-3166333 | Msa0001480:CDS | 30.0% | |
| AATGCTGACAAAACAGATTT+GGG | + | chr1_1:3166315-3166334 | Msa0001480:CDS | 30.0% | |
| AAATGTGTATGACTATCTGT+GGG | + | chr1_1:3166560-3166579 | Msa0001480:CDS | 30.0% | |
| ATGAAGTCTTCCAATATCTT+GGG | - | chr1_1:3166600-3166619 | None:intergenic | 30.0% | |
| TTGCTGCATATATAGGTTAA+AGG | + | chr1_1:3166789-3166808 | Msa0001480:intron | 30.0% | |
| TGCATATATAGGTTAAAGGT+GGG | + | chr1_1:3166793-3166812 | Msa0001480:intron | 30.0% | |
| AGGATATGATAGAGAAAACT+AGG | + | chr1_1:3166984-3167003 | Msa0001480:intron | 30.0% | |
| ATATAAAGACTTCAGCTTGA+AGG | + | chr1_1:3167049-3167068 | Msa0001480:CDS | 30.0% | |
| ! | TTGCTTGTTAGTTGAACTTA+AGG | - | chr1_1:3167153-3167172 | None:intergenic | 30.0% |
| AGTCTTAACCACATTACATA+TGG | - | chr1_1:3167319-3167338 | None:intergenic | 30.0% | |
| TAATGTGGTTAAGACTTAAG+AGG | + | chr1_1:3167323-3167342 | Msa0001480:intron | 30.0% | |
| ATCTCAATCAACAAACTCTA+GGG | - | chr1_1:3167486-3167505 | None:intergenic | 30.0% | |
| TATCTCAATCAACAAACTCT+AGG | - | chr1_1:3167487-3167506 | None:intergenic | 30.0% | |
| CTACTTTCAATTCCTAACTT+GGG | - | chr1_1:3167526-3167545 | None:intergenic | 30.0% | |
| TGTGATTGTTGAGTTATTCA+AGG | + | chr1_1:3167714-3167733 | Msa0001480:CDS | 30.0% | |
| GAGTTATTCAAGGAAACATA+TGG | + | chr1_1:3167724-3167743 | Msa0001480:CDS | 30.0% | |
| ATTCAAGGAAACATATGGTA+AGG | + | chr1_1:3167729-3167748 | Msa0001480:CDS | 30.0% | |
| ! | AGCAATAATTTTGTATGAGG+CGG | + | chr1_1:3167899-3167918 | Msa0001480:intron | 30.0% |
| !! | AATCGGTGTTGTATATAAAG+TGG | + | chr1_1:3167937-3167956 | Msa0001480:CDS | 30.0% |
| TTAGAGGAAAGGTAAGTAAT+TGG | - | chr1_1:3168097-3168116 | None:intergenic | 30.0% | |
| ! | GTCTGAAATTGTATGATTAG+AGG | - | chr1_1:3168113-3168132 | None:intergenic | 30.0% |
| !!! | CAGAGTCATTTTTCGAATTA+AGG | + | chr1_1:3168249-3168268 | Msa0001480:intron | 30.0% |
| !! | AATAGAAGAACATTTTGGAG+AGG | + | chr1_1:3168307-3168326 | Msa0001480:intron | 30.0% |
| AAACTTGATCCTATCTAATG+AGG | + | chr1_1:3168379-3168398 | Msa0001480:intron | 30.0% | |
| ! | CAAGTTTTTCCTCATTAGAT+AGG | - | chr1_1:3168391-3168410 | None:intergenic | 30.0% |
| TGTTTATTCAAAAGGATAGG+AGG | - | chr1_1:3168539-3168558 | None:intergenic | 30.0% | |
| GGATGTTTATTCAAAAGGAT+AGG | - | chr1_1:3168542-3168561 | None:intergenic | 30.0% | |
| GAAGGAATCAAATTATCACA+TGG | + | chr1_1:3168609-3168628 | Msa0001480:CDS | 30.0% | |
| !!! | TCGAAAGTTGTTTTAAGGTT+CGG | - | chr1_1:3168820-3168839 | None:intergenic | 30.0% |
| !! | TTTTTGGTCCTTGCAAAAAT+AGG | + | chr1_1:3169034-3169053 | Msa0001480:intron | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+AGG | - | chr1_1:3169459-3169478 | None:intergenic | 30.0% |
| ! | TTGCAAAAATAGGTCAGTTT+TGG | + | chr1_1:3169044-3169063 | Msa0001480:intron | 30.0% |
| TGACAAATCATCACATAACT+GGG | - | chr1_1:3169143-3169162 | None:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | + | chr1_1:3169297-3169316 | Msa0001480:intron | 30.0% | |
| GACAAATCATCACATAATTG+GGG | + | chr1_1:3169299-3169318 | Msa0001480:intron | 30.0% | |
| ! | TTGCAAAAATAGGTCAGTTT+TGG | - | chr1_1:3169044-3169063 | None:intergenic | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+AGG | + | chr1_1:3169459-3169478 | Msa0001480:intron | 30.0% |
| !! | TTTTTGGTCCTTGCAAAAAT+AGG | - | chr1_1:3169034-3169053 | None:intergenic | 30.0% |
| ! | CAGACGAGTACTTTTAATAA+AGG | - | chr1_1:3169794-3169813 | None:intergenic | 30.0% |
| AAGAAATATGCTTTGTCTAG+AGG | + | chr1_1:3169972-3169991 | Msa0001480:intron | 30.0% | |
| !!! | GACGATGATTTAGTTTTAAC+TGG | + | chr1_1:3170110-3170129 | Msa0001480:intron | 30.0% |
| !!! | ACTTTGAAGCTTTTTTCGAA+TGG | - | chr1_1:3170401-3170420 | None:intergenic | 30.0% |
| CATTATGCTCAAAACAAACA+AGG | + | chr1_1:3170768-3170787 | Msa0001480:CDS | 30.0% | |
| GATTCTCCACTTATTCAATT+TGG | + | chr1_1:3171083-3171102 | Msa0001480:intron | 30.0% | |
| TTCTCCACTTATTCAATTTG+GGG | + | chr1_1:3171085-3171104 | Msa0001480:intron | 30.0% | |
| TTATAGCAAAATTCATGAGC+TGG | + | chr1_1:3171225-3171244 | Msa0001480:CDS | 30.0% | |
| AGGAATAGCAAGAGATTGAT+CGG | - | chr1_1:3165656-3165675 | None:intergenic | 35.0% | |
| TTTGTAGTAAGGACTACTGT+GGG | - | chr1_1:3165752-3165771 | None:intergenic | 35.0% | |
| TGAGTCGTGATAACAAGAAA+GGG | - | chr1_1:3165848-3165867 | None:intergenic | 35.0% | |
| TTGAGTCGTGATAACAAGAA+AGG | - | chr1_1:3165849-3165868 | None:intergenic | 35.0% | |
| !! | AAAATCATGAGTTGGTGGTT+GGG | - | chr1_1:3165965-3165984 | None:intergenic | 35.0% |
| ! | ACAACAAAATCATGAGTTGG+TGG | - | chr1_1:3165970-3165989 | None:intergenic | 35.0% |
| TGACAAAACAGATTTGGGTA+TGG | + | chr1_1:3166320-3166339 | Msa0001480:CDS | 35.0% | |
| TTCTGAACAAACAGTGTCAT+TGG | + | chr1_1:3166494-3166513 | Msa0001480:CDS | 35.0% | |
| TTCTTCAACTTATGCTCACA+AGG | - | chr1_1:3166525-3166544 | None:intergenic | 35.0% | |
| GAAATGTGTATGACTATCTG+TGG | + | chr1_1:3166559-3166578 | Msa0001480:CDS | 35.0% | |
| GATGAAGTCTTCCAATATCT+TGG | - | chr1_1:3166601-3166620 | None:intergenic | 35.0% | |
| CTGCATATATAGGTTAAAGG+TGG | + | chr1_1:3166792-3166811 | Msa0001480:intron | 35.0% | |
| TGGATCTCTTTCCTACATTT+GGG | - | chr1_1:3166851-3166870 | None:intergenic | 35.0% | |
| ATGGATCTCTTTCCTACATT+TGG | - | chr1_1:3166852-3166871 | None:intergenic | 35.0% | |
| TAGGAAAGAGATCCATGATA+CGG | + | chr1_1:3166856-3166875 | Msa0001480:CDS | 35.0% | |
| CACATTACATATGGTCTAGT+GGG | - | chr1_1:3167310-3167329 | None:intergenic | 35.0% | |
| AAGACTTAAGAGGCTGAATT+TGG | + | chr1_1:3167333-3167352 | Msa0001480:intron | 35.0% | |
| AGACTTAAGAGGCTGAATTT+GGG | + | chr1_1:3167334-3167353 | Msa0001480:intron | 35.0% | |
| ! | GGTTAAGAAATTAGCCTAAC+CGG | + | chr1_1:3167396-3167415 | Msa0001480:intron | 35.0% |
| CCTAACTTGGGTAGATAATA+TGG | - | chr1_1:3167514-3167533 | None:intergenic | 35.0% | |
| CCATATTATCTACCCAAGTT+AGG | + | chr1_1:3167511-3167530 | Msa0001480:intron | 35.0% | |
| CCTACTTTCAATTCCTAACT+TGG | - | chr1_1:3167527-3167546 | None:intergenic | 35.0% | |
| CCAAGTTAGGAATTGAAAGT+AGG | + | chr1_1:3167524-3167543 | Msa0001480:intron | 35.0% | |
| GAAATCACTTCATCATGTTG+AGG | + | chr1_1:3167657-3167676 | Msa0001480:CDS | 35.0% | |
| GTAAATCTCTCAGAAGCAAA+GGG | + | chr1_1:3167679-3167698 | Msa0001480:CDS | 35.0% | |
| ! | TGGCTGGTAGAAAAGTATAA+AGG | + | chr1_1:3167957-3167976 | Msa0001480:CDS | 35.0% |
| ! | GGCTGGTAGAAAAGTATAAA+GGG | + | chr1_1:3167958-3167977 | Msa0001480:CDS | 35.0% |
| TTTGTTGCTCTGATGAATCA+AGG | + | chr1_1:3167997-3168016 | Msa0001480:CDS | 35.0% | |
| ! | TATATGAAGTTGGTCCTATG+AGG | + | chr1_1:3168433-3168452 | Msa0001480:intron | 35.0% |
| ! | CTAGTTGTTATTCACAGCAA+AGG | + | chr1_1:3168901-3168920 | Msa0001480:intron | 35.0% |
| GACAAATCATCACATAACTG+GGG | - | chr1_1:3169142-3169161 | None:intergenic | 35.0% | |
| GTGACAAATCATCACATAAC+TGG | - | chr1_1:3169144-3169163 | None:intergenic | 35.0% | |
| !!! | TTGTCACTTTTGTGCATATG+TGG | - | chr1_1:3169284-3169303 | None:intergenic | 35.0% |
| !!! | AAAACTGGCCTATTTTTGCA+GGG | + | chr1_1:3169398-3169417 | Msa0001480:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr1_1:3169409-3169428 | None:intergenic | 35.0% |
| ! | TCTGCAAAATAGGTCAGTTT+TGG | - | chr1_1:3169522-3169541 | None:intergenic | 35.0% |
| ! | AAATCTGTTTGGTTCACATC+AGG | - | chr1_1:3169818-3169837 | None:intergenic | 35.0% |
| AAAGAACAGTTGGAATAAGC+TGG | + | chr1_1:3169941-3169960 | Msa0001480:intron | 35.0% | |
| ! | TAAGCATAGCTCAGTTGATA+GGG | - | chr1_1:3170019-3170038 | None:intergenic | 35.0% |
| ATAAGCATAGCTCAGTTGAT+AGG | - | chr1_1:3170020-3170039 | None:intergenic | 35.0% | |
| TATCAACTGAGCTATGCTTA+TGG | + | chr1_1:3170019-3170038 | Msa0001480:intron | 35.0% | |
| AACTAAATCATCGTCGTTGA+GGG | - | chr1_1:3170105-3170124 | None:intergenic | 35.0% | |
| AAACTAAATCATCGTCGTTG+AGG | - | chr1_1:3170106-3170125 | None:intergenic | 35.0% | |
| !!! | TTTAGTTTTAACTGGATGGG+AGG | + | chr1_1:3170118-3170137 | Msa0001480:intron | 35.0% |
| ATTAGCATCACTTACTGTCT+AGG | - | chr1_1:3170188-3170207 | None:intergenic | 35.0% | |
| AAGAGATAGATAGAACACGA+AGG | - | chr1_1:3170219-3170238 | None:intergenic | 35.0% | |
| ! | TCCTCCTGACTTTATTTACA+AGG | + | chr1_1:3170438-3170457 | Msa0001480:CDS | 35.0% |
| ACCTTGTAAATAAAGTCAGG+AGG | - | chr1_1:3170442-3170461 | None:intergenic | 35.0% | |
| TGGAATGGAATGGAATGAAA+TGG | - | chr1_1:3170502-3170521 | None:intergenic | 35.0% | |
| TAATTGGAACTGGAATGGAA+TGG | - | chr1_1:3170512-3170531 | None:intergenic | 35.0% | |
| GGCAGTGAAATCAAATTTGA+AGG | + | chr1_1:3170738-3170757 | Msa0001480:CDS | 35.0% | |
| TATGCTCAAAACAAACAAGG+AGG | + | chr1_1:3170771-3170790 | Msa0001480:CDS | 35.0% | |
| TTCACCCCAAATTGAATAAG+TGG | - | chr1_1:3171092-3171111 | None:intergenic | 35.0% | |
| !!! | AGTTCTCATTTTTGGGATGT+AGG | + | chr1_1:3171167-3171186 | Msa0001480:intron | 35.0% |
| GATCATGTGTAACTTATTGC+TGG | + | chr1_1:3171272-3171291 | Msa0001480:exon | 35.0% | |
| TGTGTAACTTATTGCTGGAA+TGG | + | chr1_1:3171277-3171296 | Msa0001480:exon | 35.0% | |
| AAGAAATTCCAATGCTGCGA+TGG | - | chr1_1:3165317-3165336 | None:intergenic | 40.0% | |
| ! | ATCGCAGCATTGGAATTTCT+TGG | + | chr1_1:3165316-3165335 | Msa0001480:five_prime_UTR | 40.0% |
| GGTGGTTGTCATCAATATCA+TGG | + | chr1_1:3165551-3165570 | Msa0001480:CDS | 40.0% | |
| TTCTGATAGTCCCTACTACA+AGG | + | chr1_1:3165624-3165643 | Msa0001480:CDS | 40.0% | |
| TCTGATAGTCCCTACTACAA+GGG | + | chr1_1:3165625-3165644 | Msa0001480:CDS | 40.0% | |
| TCCTCATGAAGAATACCAAG+AGG | + | chr1_1:3165672-3165691 | Msa0001480:CDS | 40.0% | |
| TCCTCTTGGTATTCTTCATG+AGG | - | chr1_1:3165676-3165695 | None:intergenic | 40.0% | |
| TCATGAAGAATACCAAGAGG+AGG | + | chr1_1:3165675-3165694 | Msa0001480:CDS | 40.0% | |
| ! | TATTGTTGTTGTCCTCCTCT+TGG | - | chr1_1:3165690-3165709 | None:intergenic | 40.0% |
| TTGTAGTAAGGACTACTGTG+GGG | - | chr1_1:3165751-3165770 | None:intergenic | 40.0% | |
| CTTTGTAGTAAGGACTACTG+TGG | - | chr1_1:3165753-3165772 | None:intergenic | 40.0% | |
| CACAGTAGTCCTTACTACAA+AGG | + | chr1_1:3165751-3165770 | Msa0001480:CDS | 40.0% | |
| TCGGTAAGACCTTTGTAGTA+AGG | - | chr1_1:3165763-3165782 | None:intergenic | 40.0% | |
| TCTTGTCATTGATGCCTCTT+GGG | + | chr1_1:3165789-3165808 | Msa0001480:CDS | 40.0% | |
| AGAAAGGGATGAGTTGTGAT+GGG | - | chr1_1:3165833-3165852 | None:intergenic | 40.0% | |
| AAGAAAGGGATGAGTTGTGA+TGG | - | chr1_1:3165834-3165853 | None:intergenic | 40.0% | |
| ACGACTCAAGTCCATACTAT+AGG | + | chr1_1:3165860-3165879 | Msa0001480:CDS | 40.0% | |
| CGACTCAAGTCCATACTATA+GGG | + | chr1_1:3165861-3165880 | Msa0001480:CDS | 40.0% | |
| GACTCAAGTCCATACTATAG+GGG | + | chr1_1:3165862-3165881 | Msa0001480:CDS | 40.0% | |
| GCAATAAGACCCCTATAGTA+TGG | - | chr1_1:3165874-3165893 | None:intergenic | 40.0% | |
| !! | CAAAATCATGAGTTGGTGGT+TGG | - | chr1_1:3165966-3165985 | None:intergenic | 40.0% |
| TCCAGAAGATCAATCACTCA+TGG | + | chr1_1:3165999-3166018 | Msa0001480:CDS | 40.0% | |
| ACCATGAGTGATTGATCTTC+TGG | - | chr1_1:3166003-3166022 | None:intergenic | 40.0% | |
| AGAACCAGAAGCAACTTTAG+AGG | + | chr1_1:3166026-3166045 | Msa0001480:CDS | 40.0% | |
| ! | AAAGTTGCTTGTGATGACGA+CGG | - | chr1_1:3166108-3166127 | None:intergenic | 40.0% |
| AGCATAAGAGAAAGCCTTTG+AGG | + | chr1_1:3166247-3166266 | Msa0001480:CDS | 40.0% | |
| GCATAAGAGAAAGCCTTTGA+GGG | + | chr1_1:3166248-3166267 | Msa0001480:CDS | 40.0% | |
| GAAATTACTCTCTCCCTCAA+AGG | - | chr1_1:3166264-3166283 | None:intergenic | 40.0% | |
| CAAAACAGATTTGGGTATGG+AGG | + | chr1_1:3166323-3166342 | Msa0001480:CDS | 40.0% | |
| ! | AGAGACAACGGATTTGAAAG+AGG | + | chr1_1:3166434-3166453 | Msa0001480:CDS | 40.0% |
| ! | AAGAGGAACTCAGAGACTTT+TGG | + | chr1_1:3166451-3166470 | Msa0001480:CDS | 40.0% |
| ! | TAAGTTGAAGAACACAGCTG+AGG | + | chr1_1:3166533-3166552 | Msa0001480:CDS | 40.0% |
| !! | CAATATCTTGGGCTGGTATT+TGG | - | chr1_1:3166589-3166608 | None:intergenic | 40.0% |
| CAAATACCAGCCCAAGATAT+TGG | + | chr1_1:3166587-3166606 | Msa0001480:CDS | 40.0% | |
| ATATAGGTTAAAGGTGGGTG+TGG | + | chr1_1:3166798-3166817 | Msa0001480:intron | 40.0% | |
| GATCTCTTTCCTACATTTGG+GGG | - | chr1_1:3166849-3166868 | None:intergenic | 40.0% | |
| GGATCTCTTTCCTACATTTG+GGG | - | chr1_1:3166850-3166869 | None:intergenic | 40.0% | |
| AGGAAAGAGATCCATGATAC+GGG | + | chr1_1:3166857-3166876 | Msa0001480:CDS | 40.0% | |
| TTCCTTTGCTTCTTAATGGC+AGG | + | chr1_1:3167016-3167035 | Msa0001480:intron | 40.0% | |
| CACTATACGGTAATAGCTAG+AGG | + | chr1_1:3167234-3167253 | Msa0001480:intron | 40.0% | |
| TAGCTAGAGGATTTGCAAGA+AGG | + | chr1_1:3167247-3167266 | Msa0001480:intron | 40.0% | |
| CCACATTACATATGGTCTAG+TGG | - | chr1_1:3167311-3167330 | None:intergenic | 40.0% | |
| CCACTAGACCATATGTAATG+TGG | + | chr1_1:3167308-3167327 | Msa0001480:intron | 40.0% | |
| ACTTGAGTAACCAATTGTGC+CGG | - | chr1_1:3167418-3167437 | None:intergenic | 40.0% | |
| TCTCTCCTTTGACATGGATA+GGG | + | chr1_1:3167601-3167620 | Msa0001480:intron | 40.0% | |
| TTTCTCCCTATCCATGTCAA+AGG | - | chr1_1:3167609-3167628 | None:intergenic | 40.0% | |
| TTGACATGGATAGGGAGAAA+TGG | + | chr1_1:3167609-3167628 | Msa0001480:intron | 40.0% | |
| GGTAAATCTCTCAGAAGCAA+AGG | + | chr1_1:3167678-3167697 | Msa0001480:CDS | 40.0% | |
| GGAGAAGCTATCGTTAGAAT+CGG | + | chr1_1:3167920-3167939 | Msa0001480:CDS | 40.0% | |
| ! | GGTGTTGTATATAAAGTGGC+TGG | + | chr1_1:3167941-3167960 | Msa0001480:CDS | 40.0% |
| GTGGTGCAATATGATTGGAT+TGG | - | chr1_1:3168029-3168048 | None:intergenic | 40.0% | |
| AACTCACTTGTTTCGGTAAG+TGG | - | chr1_1:3168700-3168719 | None:intergenic | 40.0% | |
| ! | TTTAAGGTTCGGTAGAGCTT+TGG | - | chr1_1:3168809-3168828 | None:intergenic | 40.0% |
| ! | TGTATTGGTCCCTGCAAAAT+AGG | + | chr1_1:3168973-3168992 | Msa0001480:intron | 40.0% |
| !! | CAAAACTGGCCTATTTTGCA+GGG | - | chr1_1:3168985-3169004 | None:intergenic | 40.0% |
| ATCATCACATAATTGGGGTC+AGG | + | chr1_1:3169304-3169323 | Msa0001480:intron | 40.0% | |
| TCATCACATAATTGGGGTCA+GGG | + | chr1_1:3169305-3169324 | Msa0001480:intron | 40.0% | |
| GCAGAGACTAAAACCAAAAC+TGG | + | chr1_1:3169383-3169402 | Msa0001480:intron | 40.0% | |
| ! | CTGCAAAAATAGGCCAGTTT+TGG | - | chr1_1:3169399-3169418 | None:intergenic | 40.0% |
| !!! | CAAAACTGGCCTATTTTTGC+AGG | + | chr1_1:3169397-3169416 | Msa0001480:intron | 40.0% |
| !! | GGTATTGGTCTCTGCAAAAT+AGG | - | chr1_1:3169532-3169551 | None:intergenic | 40.0% |
| CTGTTTGTTTCACACCAAAC+AGG | + | chr1_1:3169582-3169601 | Msa0001480:intron | 40.0% | |
| !! | AGTTGATAGGGACAATGTGT+TGG | - | chr1_1:3170007-3170026 | None:intergenic | 40.0% |
| TGGTTTACATACGCAGTCTT+TGG | + | chr1_1:3170554-3170573 | Msa0001480:intron | 40.0% | |
| TAGTGAGTGATCAACTAGAC+TGG | - | chr1_1:3170592-3170611 | None:intergenic | 40.0% | |
| TGGAATGGAGCATAGATAAG+TGG | + | chr1_1:3171292-3171311 | Msa0001480:three_prime_UTR | 40.0% | |
| ATACTTGTGCCGTCTCTAGT+CGG | - | chr1_1:3165347-3165366 | None:intergenic | 45.0% | |
| AGTAGGGACTATCAGAAGAG+AGG | - | chr1_1:3165621-3165640 | None:intergenic | 45.0% | |
| TGTAGTAAGGACTACTGTGG+GGG | - | chr1_1:3165750-3165769 | None:intergenic | 45.0% | |
| CTCTTGTCATTGATGCCTCT+TGG | + | chr1_1:3165788-3165807 | Msa0001480:CDS | 45.0% | |
| GAAAGGGATGAGTTGTGATG+GGG | - | chr1_1:3165832-3165851 | None:intergenic | 45.0% | |
| ! | ACCAGAAGCAACTTTAGAGG+AGG | + | chr1_1:3166029-3166048 | Msa0001480:CDS | 45.0% |
| TTGATCCATCCCGATATCCA+AGG | + | chr1_1:3166060-3166079 | Msa0001480:CDS | 45.0% | |
| TGATCCATCCCGATATCCAA+GGG | + | chr1_1:3166061-3166080 | Msa0001480:CDS | 45.0% | |
| AAAGGCTTCCCTTGGATATC+GGG | - | chr1_1:3166072-3166091 | None:intergenic | 45.0% | |
| CAAAGGCTTCCCTTGGATAT+CGG | - | chr1_1:3166073-3166092 | None:intergenic | 45.0% | |
| ATATCCAAGGGAAGCCTTTG+AGG | + | chr1_1:3166073-3166092 | Msa0001480:CDS | 45.0% | |
| TATCCAAGGGAAGCCTTTGA+GGG | + | chr1_1:3166074-3166093 | Msa0001480:CDS | 45.0% | |
| !! | GACGGATTGTTAACCCTCAA+AGG | - | chr1_1:3166090-3166109 | None:intergenic | 45.0% |
| GTCGTCATCACAAGCAACTT+TGG | + | chr1_1:3166107-3166126 | Msa0001480:CDS | 45.0% | |
| GTCATCACAAGCAACTTTGG+AGG | + | chr1_1:3166110-3166129 | Msa0001480:CDS | 45.0% | |
| ! | ACAAGCAACTTTGGAGGAGA+TGG | + | chr1_1:3166116-3166135 | Msa0001480:CDS | 45.0% |
| GTGTGACGATGTTGTGTTGT+TGG | + | chr1_1:3166218-3166237 | Msa0001480:CDS | 45.0% | |
| AGATTTGGGTATGGAGGAGA+TGG | + | chr1_1:3166329-3166348 | Msa0001480:CDS | 45.0% | |
| AGAGTCGTGCATCACAAGTT+GGG | + | chr1_1:3166388-3166407 | Msa0001480:CDS | 45.0% | |
| ! | GGAACTCAGAGACTTTTGGT+TGG | + | chr1_1:3166455-3166474 | Msa0001480:CDS | 45.0% |
| !! | CTCAGAGACTTTTGGTTGGA+TGG | + | chr1_1:3166459-3166478 | Msa0001480:CDS | 45.0% |
| TTGAAGAACACAGCTGAGGA+AGG | + | chr1_1:3166537-3166556 | Msa0001480:CDS | 45.0% | |
| AGTCTTCCAATATCTTGGGC+TGG | - | chr1_1:3166596-3166615 | None:intergenic | 45.0% | |
| ! | AGCACTTCAGCTGAAAGCAT+TGG | + | chr1_1:3166635-3166654 | Msa0001480:CDS | 45.0% |
| TTTGAAGGACCCCCAAATGT+AGG | + | chr1_1:3166837-3166856 | Msa0001480:CDS | 45.0% | |
| GACCTGCCATTAAGAAGCAA+AGG | - | chr1_1:3167021-3167040 | None:intergenic | 45.0% | |
| TGCTTCTTAATGGCAGGTCA+CGG | + | chr1_1:3167022-3167041 | Msa0001480:intron | 45.0% | |
| ! | ATTAGCCTAACCGGCACAAT+TGG | + | chr1_1:3167405-3167424 | Msa0001480:intron | 45.0% |
| !! | AGTAACCAATTGTGCCGGTT+AGG | - | chr1_1:3167413-3167432 | None:intergenic | 45.0% |
| ! | ACAAACTCTAGGGAAACACG+AGG | - | chr1_1:3167476-3167495 | None:intergenic | 45.0% |
| CTCTCTCCTTTGACATGGAT+AGG | + | chr1_1:3167600-3167619 | Msa0001480:intron | 45.0% | |
| ! | TGACAGTTTTCTGGGCTACA+AGG | - | chr1_1:3167772-3167791 | None:intergenic | 45.0% |
| TGTAGCCCAGAAAACTGTCA+AGG | + | chr1_1:3167772-3167791 | Msa0001480:CDS | 45.0% | |
| ! | GCGTACCTTGACAGTTTTCT+GGG | - | chr1_1:3167780-3167799 | None:intergenic | 45.0% |
| ! | TGCGTACCTTGACAGTTTTC+TGG | - | chr1_1:3167781-3167800 | None:intergenic | 45.0% |
| GGACAGTGGTGCAATATGAT+TGG | - | chr1_1:3168034-3168053 | None:intergenic | 45.0% | |
| GAAATGCTGAGTGACCTGTT+GGG | - | chr1_1:3168075-3168094 | None:intergenic | 45.0% | |
| ! | GGCTTGACGGAGATTGTTTT+TGG | - | chr1_1:3168661-3168680 | None:intergenic | 45.0% |
| CCAATGAACGAATGGCTTGA+CGG | - | chr1_1:3168674-3168693 | None:intergenic | 45.0% | |
| TCAAGCCATTCGTTCATTGG+AGG | + | chr1_1:3168674-3168693 | Msa0001480:CDS | 45.0% | |
| !! | CCAAAACTGGCCTATTTTGC+AGG | - | chr1_1:3168986-3169005 | None:intergenic | 45.0% |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | + | chr1_1:3168983-3169002 | Msa0001480:intron | 45.0% |
| GCAGGGACTAAAACCAAAAC+TGG | - | chr1_1:3169444-3169463 | None:intergenic | 45.0% | |
| TCATCACATAACTGGGGTCA+GGG | - | chr1_1:3169136-3169155 | None:intergenic | 45.0% | |
| ATCATCACATAACTGGGGTC+AGG | - | chr1_1:3169137-3169156 | None:intergenic | 45.0% | |
| TGTTTCACACCAAACAGGAG+AGG | + | chr1_1:3169587-3169606 | Msa0001480:intron | 45.0% | |
| GTTTCACACCAAACAGGAGA+GGG | + | chr1_1:3169588-3169607 | Msa0001480:intron | 45.0% | |
| !! | CTAGTTTTCCCTCTCCTGTT+TGG | - | chr1_1:3169599-3169618 | None:intergenic | 45.0% |
| AGATGAATGTGACCCTTGCA+AGG | - | chr1_1:3169653-3169672 | None:intergenic | 45.0% | |
| TGATCACTCACTATGCTCAG+AGG | + | chr1_1:3170599-3170618 | Msa0001480:CDS | 45.0% | |
| TGCTCAGAGGTTACCAAACT+TGG | + | chr1_1:3170612-3170631 | Msa0001480:CDS | 45.0% | |
| AGAGGTTACCAAACTTGGCA+AGG | + | chr1_1:3170617-3170636 | Msa0001480:CDS | 45.0% | |
| AGTGTACTCCTTGCCAAGTT+TGG | - | chr1_1:3170628-3170647 | None:intergenic | 45.0% | |
| TTCATTGAATCCCCGTGAGT+TGG | + | chr1_1:3171047-3171066 | Msa0001480:intron | 45.0% | |
| TCATTGAATCCCCGTGAGTT+GGG | + | chr1_1:3171048-3171067 | Msa0001480:intron | 45.0% | |
| !!! | AATTTTTTTTTTATAGTTTT+TGG | - | chr1_1:3169362-3169381 | None:intergenic | 5.0% |
| !!! | AATTTATTTTTTATAGTTTT+TGG | - | chr1_1:3169486-3169505 | None:intergenic | 5.0% |
| TTGGAAGCTCCGACTAGAGA+CGG | + | chr1_1:3165335-3165354 | Msa0001480:five_prime_UTR | 50.0% | |
| !! | TGAAAGTACCTAGCCCGACT+CGG | + | chr1_1:3165440-3165459 | Msa0001480:CDS | 50.0% |
| CAACAGATTGCTTCCGAGTC+GGG | - | chr1_1:3165456-3165475 | None:intergenic | 50.0% | |
| CCAACAGATTGCTTCCGAGT+CGG | - | chr1_1:3165457-3165476 | None:intergenic | 50.0% | |
| CGAGACATATTGTGGCGAGT+AGG | - | chr1_1:3165499-3165518 | None:intergenic | 50.0% | |
| ACAATATGTCTCGTTCCGCG+CGG | + | chr1_1:3165506-3165525 | Msa0001480:CDS | 50.0% | |
| TCGGTGAGACCCTTGTAGTA+GGG | - | chr1_1:3165637-3165656 | None:intergenic | 50.0% | |
| ATCGGTGAGACCCTTGTAGT+AGG | - | chr1_1:3165638-3165657 | None:intergenic | 50.0% | |
| GGGGATGATGAAAGGAGGAT+AGG | - | chr1_1:3165730-3165749 | None:intergenic | 50.0% | |
| TACTGTGGGGGGATGATGAA+AGG | - | chr1_1:3165738-3165757 | None:intergenic | 50.0% | |
| GTAGTAAGGACTACTGTGGG+GGG | - | chr1_1:3165749-3165768 | None:intergenic | 50.0% | |
| ! | GATGAGTTGTGATGGGGATG+GGG | - | chr1_1:3165826-3165845 | None:intergenic | 50.0% |
| ! | GGATGAGTTGTGATGGGGAT+GGG | - | chr1_1:3165827-3165846 | None:intergenic | 50.0% |
| TTGAGGGAGAAGAGAGAGGA+GGG | - | chr1_1:3165916-3165935 | None:intergenic | 50.0% | |
| GATGTTGAGGGAGAAGAGAG+AGG | - | chr1_1:3165920-3165939 | None:intergenic | 50.0% | |
| !! | ATCATGAGTTGGTGGTTGGG+TGG | - | chr1_1:3165962-3165981 | None:intergenic | 50.0% |
| !! | GCCTCCTCTAAAGTTGCTTC+TGG | - | chr1_1:3166033-3166052 | None:intergenic | 50.0% |
| ! | AGCAACTTTAGAGGAGGCGA+TGG | + | chr1_1:3166035-3166054 | Msa0001480:CDS | 50.0% |
| TAACCCTCAAAGGCTTCCCT+TGG | - | chr1_1:3166080-3166099 | None:intergenic | 50.0% | |
| ! | ACTTTGGAGGAGATGGACGA+CGG | + | chr1_1:3166123-3166142 | Msa0001480:CDS | 50.0% |
| ! | GACGACGGTGATGATGTTGA+AGG | + | chr1_1:3166138-3166157 | Msa0001480:CDS | 50.0% |
| ! | GACGGTGATGATGTTGAAGG+CGG | + | chr1_1:3166141-3166160 | Msa0001480:CDS | 50.0% |
| ! | ACGGTGATGATGTTGAAGGC+GGG | + | chr1_1:3166142-3166161 | Msa0001480:CDS | 50.0% |
| GGGTATGGAGGAGATGGAAT+TGG | + | chr1_1:3166335-3166354 | Msa0001480:CDS | 50.0% | |
| GATGCACGACTCTCTCTCAA+TGG | - | chr1_1:3166381-3166400 | None:intergenic | 50.0% | |
| GAGAGTCGTGCATCACAAGT+TGG | + | chr1_1:3166387-3166406 | Msa0001480:CDS | 50.0% | |
| CACAACTGCATGCCCAACAT+AGG | + | chr1_1:3166746-3166765 | Msa0001480:intron | 50.0% | |
| ! | CCATGATACGGGCTATGCTT+CGG | + | chr1_1:3166868-3166887 | Msa0001480:CDS | 50.0% |
| ! | CATGATACGGGCTATGCTTC+GGG | + | chr1_1:3166869-3166888 | Msa0001480:CDS | 50.0% |
| !! | GCTATGCTTCGGGAGGTATT+TGG | + | chr1_1:3166879-3166898 | Msa0001480:CDS | 50.0% |
| ATATGGTCTAGTGGGAGCAG+GGG | - | chr1_1:3167302-3167321 | None:intergenic | 50.0% | |
| CATATGGTCTAGTGGGAGCA+GGG | - | chr1_1:3167303-3167322 | None:intergenic | 50.0% | |
| ACATATGGTCTAGTGGGAGC+AGG | - | chr1_1:3167304-3167323 | None:intergenic | 50.0% | |
| CCATGTCAAAGGAGAGAGAC+AGG | - | chr1_1:3167598-3167617 | None:intergenic | 50.0% | |
| CCTGTCTCTCTCCTTTGACA+TGG | + | chr1_1:3167595-3167614 | Msa0001480:intron | 50.0% | |
| !! | GTTGGGTTGATGGTGATGAG+AGG | - | chr1_1:3168058-3168077 | None:intergenic | 50.0% |
| CTCATCACCATCAACCCAAC+AGG | + | chr1_1:3168058-3168077 | Msa0001480:CDS | 50.0% | |
| !! | TGAGTGACCTGTTGGGTTGA+TGG | - | chr1_1:3168068-3168087 | None:intergenic | 50.0% |
| GGAAATGCTGAGTGACCTGT+TGG | - | chr1_1:3168076-3168095 | None:intergenic | 50.0% | |
| CCGTCAAGCCATTCGTTCAT+TGG | + | chr1_1:3168671-3168690 | Msa0001480:CDS | 50.0% | |
| AGTGGCCTCCAATGAACGAA+TGG | - | chr1_1:3168682-3168701 | None:intergenic | 50.0% | |
| CATCACATAACTGGGGTCAG+GGG | - | chr1_1:3169135-3169154 | None:intergenic | 50.0% | |
| AGTACAGTACGTGCCTTGCA+AGG | + | chr1_1:3169637-3169656 | Msa0001480:intron | 50.0% | |
| GTACAGTACGTGCCTTGCAA+GGG | + | chr1_1:3169638-3169657 | Msa0001480:intron | 50.0% | |
| GTTGGAATAAGCTGGTCGTG+AGG | + | chr1_1:3169949-3169968 | Msa0001480:intron | 50.0% | |
| ! | AATCCCCGTGAGTTGGGTTT+CGG | + | chr1_1:3171054-3171073 | Msa0001480:intron | 50.0% |
| AGATCCGAAACCCAACTCAC+GGG | - | chr1_1:3171061-3171080 | None:intergenic | 50.0% | |
| GAGATCCGAAACCCAACTCA+CGG | - | chr1_1:3171062-3171081 | None:intergenic | 50.0% | |
| GGATGTCACCATCGCAGCAT+TGG | + | chr1_1:3165306-3165325 | Msa0001480:five_prime_UTR | 55.0% | |
| !! | CCGACTCGGAAGCAATCTGT+TGG | + | chr1_1:3165454-3165473 | Msa0001480:CDS | 55.0% |
| GCGCGGAACGAGACATATTG+TGG | - | chr1_1:3165507-3165526 | None:intergenic | 55.0% | |
| GGAGGAAGAACAGTGGTCAC+TGG | + | chr1_1:3165530-3165549 | Msa0001480:CDS | 55.0% | |
| GGAAGAACAGTGGTCACTGG+TGG | + | chr1_1:3165533-3165552 | Msa0001480:CDS | 55.0% | |
| TGTGGGGGGATGATGAAAGG+AGG | - | chr1_1:3165735-3165754 | None:intergenic | 55.0% | |
| ! | TTGTGATGGGGATGGGGATG+AGG | - | chr1_1:3165820-3165839 | None:intergenic | 55.0% |
| ! | GGGATGAGTTGTGATGGGGA+TGG | - | chr1_1:3165828-3165847 | None:intergenic | 55.0% |
| AAGAGAGAGGAGGGGGAAGT+AGG | - | chr1_1:3165907-3165926 | None:intergenic | 55.0% | |
| TGAGGGAGAAGAGAGAGGAG+GGG | - | chr1_1:3165915-3165934 | None:intergenic | 55.0% | |
| GTTGAGGGAGAAGAGAGAGG+AGG | - | chr1_1:3165917-3165936 | None:intergenic | 55.0% | |
| !! | TGAGTTGGTGGTTGGGTGGT+GGG | - | chr1_1:3165958-3165977 | None:intergenic | 55.0% |
| !! | ATGAGTTGGTGGTTGGGTGG+TGG | - | chr1_1:3165959-3165978 | None:intergenic | 55.0% |
| GCTTCCCTTGGATATCGGGA+TGG | - | chr1_1:3166068-3166087 | None:intergenic | 55.0% | |
| TTGAAGGCGGGAAGCCTTTG+AGG | + | chr1_1:3166154-3166173 | Msa0001480:CDS | 55.0% | |
| TGAAGGCGGGAAGCCTTTGA+GGG | + | chr1_1:3166155-3166174 | Msa0001480:CDS | 55.0% | |
| CCGAAGCATAGCCCGTATCA+TGG | - | chr1_1:3166871-3166890 | None:intergenic | 55.0% | |
| !! | CGGGAGGTATTTGGTGCTGA+CGG | + | chr1_1:3166888-3166907 | Msa0001480:CDS | 55.0% |
| !! | ATTTGGTGCTGACGGAGTGC+AGG | + | chr1_1:3166896-3166915 | Msa0001480:CDS | 55.0% |
| !! | GGGTTGATGGTGATGAGAGG+CGG | - | chr1_1:3168055-3168074 | None:intergenic | 55.0% |
| GATCCGAAACCCAACTCACG+GGG | - | chr1_1:3171060-3171079 | None:intergenic | 55.0% | |
| GATTGCTTCCGAGTCGGGCT+AGG | - | chr1_1:3165451-3165470 | None:intergenic | 60.0% | |
| ATATGTCTCGTTCCGCGCGG+AGG | + | chr1_1:3165509-3165528 | Msa0001480:CDS | 60.0% | |
| ACTGTTCTTCCTCCTCCGCG+CGG | - | chr1_1:3165524-3165543 | None:intergenic | 60.0% | |
| ATGGGGATGGGGATGAGGAG+TGG | - | chr1_1:3165815-3165834 | None:intergenic | 60.0% | |
| GAGGAGGGGGAAGTAGGAAC+AGG | - | chr1_1:3165901-3165920 | None:intergenic | 60.0% | |
| GAGGGAGAAGAGAGAGGAGG+GGG | - | chr1_1:3165914-3165933 | None:intergenic | 60.0% | |
| !! | AGTTGGTGGTTGGGTGGTGG+GGG | - | chr1_1:3165956-3165975 | None:intergenic | 60.0% |
| !! | GAGTTGGTGGTTGGGTGGTG+GGG | - | chr1_1:3165957-3165976 | None:intergenic | 60.0% |
| ! | GATACGGGCTATGCTTCGGG+AGG | + | chr1_1:3166872-3166891 | Msa0001480:CDS | 60.0% |
| ! | TGGTGATGAGAGGCGGACAG+TGG | - | chr1_1:3168048-3168067 | None:intergenic | 60.0% |
| GCGCGGAGGAGGAAGAACAG+TGG | + | chr1_1:3165523-3165542 | Msa0001480:CDS | 65.0% | |
| GGGATGAGGAGTGGCCCAAG+AGG | - | chr1_1:3165806-3165825 | None:intergenic | 65.0% | |
| TGTCTCGTTCCGCGCGGAGG+AGG | + | chr1_1:3165512-3165531 | Msa0001480:CDS | 70.0% | |
| !! | TGGTGGTTGGGTGGTGGGGG+TGG | - | chr1_1:3165953-3165972 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3165304 | 3171424 | 3165304 | ID=Msa0001480;Name=Msa0001480 |
| chr1_1 | mRNA | 3165304 | 3171424 | 3165304 | ID=Msa0001480-mRNA-1;Parent=Msa0001480;Name=Msa0001480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=135|0.88|1|1|0.88|0.8|10|141|727 |
| chr1_1 | exon | 3165304 | 3166656 | 3165304 | ID=Msa0001480-mRNA-1:exon:732;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3166804 | 3166917 | 3166804 | ID=Msa0001480-mRNA-1:exon:733;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3167038 | 3167070 | 3167038 | ID=Msa0001480-mRNA-1:exon:734;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3167622 | 3167793 | 3167622 | ID=Msa0001480-mRNA-1:exon:735;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3167901 | 3168079 | 3167901 | ID=Msa0001480-mRNA-1:exon:736;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3168576 | 3168712 | 3168576 | ID=Msa0001480-mRNA-1:exon:737;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3170390 | 3170459 | 3170390 | ID=Msa0001480-mRNA-1:exon:738;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3170570 | 3170647 | 3170570 | ID=Msa0001480-mRNA-1:exon:739;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3170735 | 3170855 | 3170735 | ID=Msa0001480-mRNA-1:exon:740;Parent=Msa0001480-mRNA-1 |
| chr1_1 | exon | 3171222 | 3171424 | 3171222 | ID=Msa0001480-mRNA-1:exon:741;Parent=Msa0001480-mRNA-1 |
| chr1_1 | five_prime_UTR | 3165304 | 3165438 | 3165304 | ID=Msa0001480-mRNA-1:five_prime_utr;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3165439 | 3166656 | 3165439 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3166804 | 3166917 | 3166804 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3167038 | 3167070 | 3167038 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3167622 | 3167793 | 3167622 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3167901 | 3168079 | 3167901 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3168576 | 3168712 | 3168576 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3170390 | 3170459 | 3170390 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3170570 | 3170647 | 3170570 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3170735 | 3170855 | 3170735 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | CDS | 3171222 | 3171283 | 3171222 | ID=Msa0001480-mRNA-1:cds;Parent=Msa0001480-mRNA-1 |
| chr1_1 | three_prime_UTR | 3171284 | 3171424 | 3171284 | ID=Msa0001480-mRNA-1:three_prime_utr;Parent=Msa0001480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
