Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376620 | XP_003604069.1 | 89.870 | 770 | 25 | 3 | 6 | 722 | 31 | 800 | 0.0 | 1404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376620 | sp|Q8VXX4|RFC3_ARATH | 27.128 | 376 | 189 | 11 | 394 | 714 | 2 | 347 | 4.23e-31 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376620 | G7J8L1 | 89.870 | 770 | 25 | 3 | 6 | 722 | 31 | 800 | 0.0 | 1404 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001480 | Msa1376620 | 0.957056 | 6.794070e-115 | -8.615850e-47 |
| Msa1365680 | Msa1376620 | 0.946891 | 1.938299e-105 | -8.615850e-47 |
| Msa0776150 | Msa1376620 | 0.807396 | 5.158545e-50 | -8.615850e-47 |
| Msa0380330 | Msa1376620 | 0.949097 | 2.531085e-107 | -8.615850e-47 |
| Msa0304730 | Msa1376620 | 0.807334 | 5.317392e-50 | -8.615850e-47 |
| Msa0946110 | Msa1376620 | 0.801555 | 8.520606e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376620 | MtrunA17_Chr3g0145801 | 89.870 | 770 | 25 | 3 | 6 | 722 | 31 | 800 | 0.0 | 1404 |
| Msa1376620 | MtrunA17_Chr6g0460841 | 26.064 | 376 | 193 | 8 | 394 | 714 | 2 | 347 | 2.10e-31 | 126 |
| Msa1376620 | MtrunA17_Chr6g0478631 | 25.798 | 376 | 194 | 8 | 394 | 714 | 2 | 347 | 1.76e-30 | 123 |
| Msa1376620 | MtrunA17_Chr5g0404521 | 29.680 | 219 | 127 | 6 | 394 | 603 | 413 | 613 | 3.96e-23 | 104 |
| Msa1376620 | MtrunA17_Chr4g0057341 | 23.767 | 223 | 136 | 5 | 391 | 612 | 13 | 202 | 1.36e-12 | 69.7 |
| Msa1376620 | MtrunA17_Chr3g0124791 | 21.200 | 250 | 161 | 7 | 367 | 611 | 2 | 220 | 1.86e-11 | 66.2 |
| Msa1376620 | MtrunA17_Chr3g0125031 | 26.457 | 223 | 126 | 10 | 395 | 610 | 11 | 202 | 3.33e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1376620 | AT5G27740.1 | 27.128 | 376 | 189 | 11 | 394 | 714 | 2 | 347 | 4.30e-32 | 128 |
| Msa1376620 | AT1G63160.1 | 23.451 | 226 | 139 | 5 | 388 | 612 | 10 | 202 | 4.76e-12 | 68.6 |
Find 191 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTGTCAAGATTT+TGG | 0.119205 | tig0019825:-114693 | Msa1376620:intron |
| CAATATCTTGGGCTGGTATT+TGG | 0.178587 | tig0019825:+116674 | None:intergenic |
| ATGGATCTCTTTCCTACATT+TGG | 0.188482 | tig0019825:+116411 | None:intergenic |
| TGGATCTCTTTCCTACATTT+GGG | 0.199080 | tig0019825:+116412 | None:intergenic |
| CTCTTGTCATTGATGCCTCT+TGG | 0.266642 | tig0019825:-117472 | Msa1376620:CDS |
| ATGAGTTGGTGGCTGGGTGG+TGG | 0.272997 | tig0019825:+117304 | None:intergenic |
| TAATAGTAAAGAAATGTTAT+TGG | 0.286902 | tig0019825:-117890 | Msa1376620:five_prime_UTR |
| GCTATGCTTCGGGAGGTATT+TGG | 0.294451 | tig0019825:-116381 | Msa1376620:CDS |
| ACCATGAGTGATTGATCTTC+TGG | 0.294994 | tig0019825:+117260 | None:intergenic |
| AAATGCTGACATAACAGATT+TGG | 0.298976 | tig0019825:-116946 | Msa1376620:CDS |
| CAAAGGCTTCCCTTGGATAT+CGG | 0.304910 | tig0019825:+117190 | None:intergenic |
| GAGTTGGTGGCTGGGTGGTG+GGG | 0.308465 | tig0019825:+117306 | None:intergenic |
| TGAGTTGGTGGCTGGGTGGT+GGG | 0.311726 | tig0019825:+117305 | None:intergenic |
| ATCGCAGCATTGGAATTTCT+TGG | 0.318413 | tig0019825:-117940 | Msa1376620:five_prime_UTR |
| CAAATACCAGCCCAAGATAT+TGG | 0.320785 | tig0019825:-116673 | Msa1376620:CDS |
| CGACTCAAGTCCATACTATA+GGG | 0.325434 | tig0019825:-117399 | Msa1376620:CDS |
| GCCTCCTCTAAAGTTGCTTC+TGG | 0.335630 | tig0019825:+117230 | None:intergenic |
| AGTTGGTGGCTGGGTGGTGG+GGG | 0.338726 | tig0019825:+117307 | None:intergenic |
| TCTTGTCATTGATGCCTCTT+GGG | 0.347119 | tig0019825:-117471 | Msa1376620:CDS |
| AAGAGGAACTCAGAGACTTT+TGG | 0.354701 | tig0019825:-116809 | Msa1376620:CDS |
| CATGATACGGGCTATGCTTC+GGG | 0.356432 | tig0019825:-116391 | Msa1376620:CDS |
| AGTGTACTCCTTGCCAAGTT+TGG | 0.357320 | tig0019825:+112638 | None:intergenic |
| GATGAAGTCTTCCAATATCT+TGG | 0.360309 | tig0019825:+116662 | None:intergenic |
| ACGACTCAAGTCCATACTAT+AGG | 0.362105 | tig0019825:-117400 | Msa1376620:CDS |
| TGGCTGGTAGAAAAGTATAA+AGG | 0.363077 | tig0019825:-115303 | Msa1376620:CDS |
| GCAATAAGACCCCTATAGTA+TGG | 0.367889 | tig0019825:+117389 | None:intergenic |
| GGAGAGAGTAATTTCAAATT+CGG | 0.372169 | tig0019825:-116991 | Msa1376620:CDS |
| ATCAATGACAAGAGAATAAT+CGG | 0.374376 | tig0019825:+117481 | None:intergenic |
| TTGCTGCATATATAGGTTAA+AGG | 0.377368 | tig0019825:-116471 | Msa1376620:intron |
| GTGTGACGATGTTGTGTTGT+TGG | 0.396848 | tig0019825:-117042 | Msa1376620:CDS |
| TGTGATTGTTGAGTTATTCA+AGG | 0.403241 | tig0019825:-115546 | Msa1376620:CDS |
| AATGCTGACATAACAGATTT+GGG | 0.406625 | tig0019825:-116945 | Msa1376620:CDS |
| CAACAGATTGCTTCCGAGTC+GGG | 0.407390 | tig0019825:+117807 | None:intergenic |
| AAGAAATGTTATTGGTTGAA+TGG | 0.408855 | tig0019825:-117882 | Msa1376620:exon |
| TGCTCAGAGGTTACCAAACT+TGG | 0.415261 | tig0019825:-112651 | Msa1376620:CDS |
| GGATGAGTTGTGATGGGGAT+GGG | 0.415651 | tig0019825:+117436 | None:intergenic |
| TATTGTTGTTGTCCTCCTCT+TGG | 0.415757 | tig0019825:+117573 | None:intergenic |
| TTGTGATGGGGATGGGGATG+AGG | 0.417832 | tig0019825:+117443 | None:intergenic |
| CCATGATACGGGCTATGCTT+CGG | 0.425412 | tig0019825:-116392 | Msa1376620:CDS |
| AAAGGCTTCCCTTGGATATC+GGG | 0.427048 | tig0019825:+117191 | None:intergenic |
| GATCATGTGTAACTTATTGC+TGG | 0.430474 | tig0019825:-111991 | Msa1376620:exon |
| ATATAAAGACTTCAGCTTGA+AGG | 0.430997 | tig0019825:-116211 | Msa1376620:intron |
| TGAGTGACCTGTTGGGTTGA+TGG | 0.433348 | tig0019825:+115195 | None:intergenic |
| TTCTGAACAAACAGTGTCAT+TGG | 0.436278 | tig0019825:-116766 | Msa1376620:CDS |
| GTCGTCATCACAAGCAACTT+TGG | 0.439281 | tig0019825:-117153 | Msa1376620:CDS |
| TTGAAGGCGGGAAGCCTTTG+AGG | 0.442165 | tig0019825:-117106 | Msa1376620:CDS |
| ATGAACTACTTAAAAGTTGA+AGG | 0.442773 | tig0019825:-112429 | Msa1376620:intron |
| TTTGTTGCTCTGATGAATCA+AGG | 0.444944 | tig0019825:-115263 | Msa1376620:CDS |
| TTGAGGGAGAAGAGAGAGGA+GGG | 0.450193 | tig0019825:+117347 | None:intergenic |
| GAATATATTGTACAAGAAGA+AGG | 0.452115 | tig0019825:-114671 | Msa1376620:CDS |
| AGAACCAGAAGCAACTTTAG+AGG | 0.456198 | tig0019825:-117234 | Msa1376620:CDS |
| GGCTGGTAGAAAAGTATAAA+GGG | 0.456452 | tig0019825:-115302 | Msa1376620:CDS |
| GAGTTATTCAAGGAAACATA+TGG | 0.461638 | tig0019825:-115536 | Msa1376620:CDS |
| GGGTATGGAGGAGATGGAAT+TGG | 0.462012 | tig0019825:-116925 | Msa1376620:CDS |
| GATGAGTTGTGATGGGGATG+GGG | 0.465792 | tig0019825:+117437 | None:intergenic |
| CAAAATCATGAGTTGGTGGC+TGG | 0.469175 | tig0019825:+117297 | None:intergenic |
| ATATCCAAGGGAAGCCTTTG+AGG | 0.469512 | tig0019825:-117187 | Msa1376620:CDS |
| AGATTTGGGTATGGAGGAGA+TGG | 0.470166 | tig0019825:-116931 | Msa1376620:CDS |
| CTCATCACCATCAACCCAAC+AGG | 0.472528 | tig0019825:-115202 | Msa1376620:intron |
| GGCAGTGAAATCAAATTTGA+AGG | 0.474032 | tig0019825:-112525 | Msa1376620:CDS |
| TCCTCCTGACTTTATTTACA+AGG | 0.475826 | tig0019825:-112825 | Msa1376620:intron |
| TAACCCTCAAAGGCTTCCCT+TGG | 0.476042 | tig0019825:+117183 | None:intergenic |
| GATTCATAATTAACCCTCAA+AGG | 0.476710 | tig0019825:+117092 | None:intergenic |
| ATCGGTGAGACCCTTGTAGT+AGG | 0.478975 | tig0019825:+117625 | None:intergenic |
| TATCCAAGGGAAGCCTTTGA+GGG | 0.480465 | tig0019825:-117186 | Msa1376620:CDS |
| GAGGGAGAAGAGAGAGGAGG+GGG | 0.482978 | tig0019825:+117349 | None:intergenic |
| GGATGTCACCATCGCAGCAT+TGG | 0.488463 | tig0019825:-117950 | Msa1376620:five_prime_UTR |
| ATGAAGTCTTCCAATATCTT+GGG | 0.488486 | tig0019825:+116663 | None:intergenic |
| ATGGGGATGGGGATGAGGAG+TGG | 0.489564 | tig0019825:+117448 | None:intergenic |
| GATTGCTTCCGAGTCGGGCT+AGG | 0.491083 | tig0019825:+117812 | None:intergenic |
| TTCTGATAGTCCCTACTACA+AGG | 0.493874 | tig0019825:-117636 | Msa1376620:CDS |
| TTGAGTCGTGATAACAAGAA+AGG | 0.495047 | tig0019825:+117414 | None:intergenic |
| TCGGTAAGACCTTTGTAGTA+AGG | 0.495947 | tig0019825:+117500 | None:intergenic |
| AGCATAAGAGAAAGCCTTTG+AGG | 0.496667 | tig0019825:-117013 | Msa1376620:CDS |
| AGAGTCGTGCATCACAAGTT+GGG | 0.497633 | tig0019825:-116872 | Msa1376620:CDS |
| CCGAAGCATAGCCCGTATCA+TGG | 0.498734 | tig0019825:+116392 | None:intergenic |
| AATACCTTGTAAATAAAGTC+AGG | 0.507334 | tig0019825:+112821 | None:intergenic |
| GGATCTCTTTCCTACATTTG+GGG | 0.507455 | tig0019825:+116413 | None:intergenic |
| GATCTCTTTCCTACATTTGG+GGG | 0.509171 | tig0019825:+116414 | None:intergenic |
| TCCTCTTGGTATTCTTCATG+AGG | 0.509922 | tig0019825:+117587 | None:intergenic |
| TTGACATGGATAGGGAGAAA+TGG | 0.509928 | tig0019825:-115651 | Msa1376620:intron |
| AGAAAGGGATGAGTTGTGAT+GGG | 0.510848 | tig0019825:+117430 | None:intergenic |
| GAGAGTCGTGCATCACAAGT+TGG | 0.514323 | tig0019825:-116873 | Msa1376620:CDS |
| GGACAGTGGTGCAATATGAT+TGG | 0.515250 | tig0019825:+115229 | None:intergenic |
| TTATAGCAAAATTCATGAGC+TGG | 0.516501 | tig0019825:-112038 | Msa1376620:CDS |
| AAGAAATTCCAATGCTGCGA+TGG | 0.521260 | tig0019825:+117942 | None:intergenic |
| GATGTTGAGGGAGAAGAGAG+AGG | 0.523222 | tig0019825:+117343 | None:intergenic |
| TAGGAAAGAGATCCATGATA+CGG | 0.524030 | tig0019825:-116404 | Msa1376620:CDS |
| ACAAGCAACTTTGGAGGAGA+TGG | 0.527359 | tig0019825:-117144 | Msa1376620:CDS |
| TGTCTCGTTCCGCGCGGAGG+AGG | 0.532527 | tig0019825:-117748 | Msa1376620:CDS |
| ATTTGGTGCTGACGGAGTGC+AGG | 0.532697 | tig0019825:-116364 | Msa1376620:intron |
| TGAAGGCGGGAAGCCTTTGA+GGG | 0.535197 | tig0019825:-117105 | Msa1376620:CDS |
| GGGATGAGTTGTGATGGGGA+TGG | 0.535474 | tig0019825:+117435 | None:intergenic |
| AAGAAAGGGATGAGTTGTGA+TGG | 0.535971 | tig0019825:+117429 | None:intergenic |
| CGGGAGGTATTTGGTGCTGA+CGG | 0.536087 | tig0019825:-116372 | Msa1376620:CDS |
| GAAATTACTCTCTCCCTCAA+AGG | 0.540067 | tig0019825:+116999 | None:intergenic |
| GGAGGAAGAACAGTGGTCAC+TGG | 0.540307 | tig0019825:-117730 | Msa1376620:CDS |
| ATTCAAGGAAACATATGGTA+AGG | 0.541100 | tig0019825:-115531 | Msa1376620:CDS |
| TGTGTAACTTATTGCTGGAA+TGG | 0.541736 | tig0019825:-111986 | Msa1376620:exon |
| GCATAAGAGAAAGCCTTTGA+GGG | 0.545630 | tig0019825:-117012 | Msa1376620:CDS |
| CGAGACATATTGTGGCGAGT+AGG | 0.547083 | tig0019825:+117764 | None:intergenic |
| TCGGTGAGACCCTTGTAGTA+GGG | 0.547814 | tig0019825:+117626 | None:intergenic |
| CTGCATATATAGGTTAAAGG+TGG | 0.548666 | tig0019825:-116468 | Msa1376620:intron |
| GTAAATCTCTCAGAAGCAAA+GGG | 0.548782 | tig0019825:-115581 | Msa1376620:CDS |
| TGAGTCGTGATAACAAGAAA+GGG | 0.550864 | tig0019825:+117415 | None:intergenic |
| GGTGGTTGTCATCAATATCA+TGG | 0.553880 | tig0019825:-117709 | Msa1376620:CDS |
| GGTAAATCTCTCAGAAGCAA+AGG | 0.556549 | tig0019825:-115582 | Msa1376620:CDS |
| GGTATTGAAATTGATGTTGA+GGG | 0.558033 | tig0019825:+117331 | None:intergenic |
| AAGACAACAAAATCATGAGT+TGG | 0.558224 | tig0019825:+117290 | None:intergenic |
| AATCGGTGTTGTATATAAAG+TGG | 0.559508 | tig0019825:-115323 | Msa1376620:CDS |
| GACGGATTGTTAACCCTCAA+AGG | 0.560794 | tig0019825:+117173 | None:intergenic |
| ATATAGGTTAAAGGTGGGTG+TGG | 0.561146 | tig0019825:-116462 | Msa1376620:intron |
| AGTCTTCCAATATCTTGGGC+TGG | 0.561256 | tig0019825:+116667 | None:intergenic |
| AGGAATAGCAAGAGATTGAT+CGG | 0.562340 | tig0019825:+117607 | None:intergenic |
| GGAGAAGCTATCGTTAGAAT+CGG | 0.563580 | tig0019825:-115340 | Msa1376620:CDS |
| AGCACTTCAGCTGAAAGCAT+TGG | 0.564498 | tig0019825:-116625 | Msa1376620:intron |
| TGGTATTGAAATTGATGTTG+AGG | 0.568829 | tig0019825:+117330 | None:intergenic |
| GCGCGGAACGAGACATATTG+TGG | 0.569690 | tig0019825:+117756 | None:intergenic |
| TTCTTCAACTTATGCTCACA+AGG | 0.572262 | tig0019825:+116738 | None:intergenic |
| TTTGTAGTAAGGACTACTGT+GGG | 0.575498 | tig0019825:+117511 | None:intergenic |
| AGAGACAACGGATTTGAAAG+AGG | 0.575889 | tig0019825:-116826 | Msa1376620:CDS |
| AGAGATTTACCTCAACATGA+TGG | 0.576146 | tig0019825:+115594 | None:intergenic |
| TGAGGGAGAAGAGAGAGGAG+GGG | 0.578087 | tig0019825:+117348 | None:intergenic |
| GATGCACGACTCTCTCTCAA+TGG | 0.579259 | tig0019825:+116882 | None:intergenic |
| TTGGAAGCTCCGACTAGAGA+CGG | 0.579785 | tig0019825:-117921 | Msa1376620:five_prime_UTR |
| AATATCATGGATGAAGAAAG+AGG | 0.580077 | tig0019825:-117696 | Msa1376620:CDS |
| GGTGTTGTATATAAAGTGGC+TGG | 0.580355 | tig0019825:-115319 | Msa1376620:CDS |
| CCAACAGATTGCTTCCGAGT+CGG | 0.580520 | tig0019825:+117806 | None:intergenic |
| CATAACAGATTTGGGTATGG+AGG | 0.584051 | tig0019825:-116937 | Msa1376620:CDS |
| TAGTGAGTGATCAACTAGAC+TGG | 0.585940 | tig0019825:+112674 | None:intergenic |
| TCCAGAAGATCAATCACTCA+TGG | 0.586525 | tig0019825:-117261 | Msa1376620:CDS |
| TTGATCCATCCCGATATCCA+AGG | 0.587536 | tig0019825:-117200 | Msa1376620:CDS |
| GGGGATGATGAAAGGAGGAT+AGG | 0.590039 | tig0019825:+117533 | None:intergenic |
| GTTGAGGGAGAAGAGAGAGG+AGG | 0.592435 | tig0019825:+117346 | None:intergenic |
| TGCATATATAGGTTAAAGGT+GGG | 0.594420 | tig0019825:-116467 | Msa1376620:intron |
| TTGAAGAACACAGCTGAGGA+AGG | 0.596267 | tig0019825:-116723 | Msa1376620:CDS |
| AAAATCATGAGTTGGTGGCT+GGG | 0.596820 | tig0019825:+117298 | None:intergenic |
| GAAATGTGTATGACTATCTG+TGG | 0.596972 | tig0019825:-116701 | Msa1376620:CDS |
| CATTATGCTCAAAACAAACA+AGG | 0.599265 | tig0019825:-112495 | Msa1376620:CDS |
| ACGGTGATGATGTTGAAGGC+GGG | 0.600422 | tig0019825:-117118 | Msa1376620:CDS |
| ATACTTGTGCCGTCTCTAGT+CGG | 0.602090 | tig0019825:+117912 | None:intergenic |
| AGCAACTTTAGAGGAGGCGA+TGG | 0.602645 | tig0019825:-117225 | Msa1376620:CDS |
| AGGAAAGAGATCCATGATAC+GGG | 0.602954 | tig0019825:-116403 | Msa1376620:CDS |
| TCTGATAGTCCCTACTACAA+GGG | 0.603443 | tig0019825:-117635 | Msa1376620:CDS |
| ACAACAAAATCATGAGTTGG+TGG | 0.606844 | tig0019825:+117293 | None:intergenic |
| AGAGGTTACCAAACTTGGCA+AGG | 0.609398 | tig0019825:-112646 | Msa1376620:CDS |
| GTCATCACAAGCAACTTTGG+AGG | 0.613027 | tig0019825:-117150 | Msa1376620:CDS |
| TGAAAGTACCTAGCCCGACT+CGG | 0.614008 | tig0019825:-117820 | Msa1376620:CDS |
| CCGACTCGGAAGCAATCTGT+TGG | 0.618079 | tig0019825:-117806 | Msa1376620:CDS |
| GTGGTGCAATATGATTGGAT+TGG | 0.622821 | tig0019825:+115234 | None:intergenic |
| CACAGTAGTCCTTACTACAA+AGG | 0.624786 | tig0019825:-117509 | Msa1376620:CDS |
| GAAATCACTCCATCATGTTG+AGG | 0.626995 | tig0019825:-115603 | Msa1376620:CDS |
| ACTAATAAATACAGAGACAA+CGG | 0.628311 | tig0019825:-116838 | Msa1376620:CDS |
| GACGACGGTGATGATGTTGA+AGG | 0.628956 | tig0019825:-117122 | Msa1376620:CDS |
| AAGGAATCAAATTATCACAT+GGG | 0.629209 | tig0019825:-114652 | Msa1376620:CDS |
| GAAGGAATCAAATTATCACA+TGG | 0.630443 | tig0019825:-114653 | Msa1376620:CDS |
| TGACATAACAGATTTGGGTA+TGG | 0.631514 | tig0019825:-116940 | Msa1376620:CDS |
| GAAATGCTGAGTGACCTGTT+GGG | 0.632320 | tig0019825:+115188 | None:intergenic |
| GCTTCCCTTGGATATCGGGA+TGG | 0.632618 | tig0019825:+117195 | None:intergenic |
| TGTAGTAAGGACTACTGTGG+GGG | 0.634101 | tig0019825:+117513 | None:intergenic |
| ACCAGAAGCAACTTTAGAGG+AGG | 0.637183 | tig0019825:-117231 | Msa1376620:CDS |
| GACGGTGATGATGTTGAAGG+CGG | 0.638353 | tig0019825:-117119 | Msa1376620:CDS |
| GACTCAAGTCCATACTATAG+GGG | 0.641597 | tig0019825:-117398 | Msa1376620:CDS |
| AAAGTTGCTTGTGATGACGA+CGG | 0.645589 | tig0019825:+117155 | None:intergenic |
| ATCATGAGTTGGTGGCTGGG+TGG | 0.649698 | tig0019825:+117301 | None:intergenic |
| GGGATGAGGAGTGGCCCAAG+AGG | 0.649717 | tig0019825:+117457 | None:intergenic |
| AGTAGGGACTATCAGAAGAG+AGG | 0.651405 | tig0019825:+117642 | None:intergenic |
| ATATGTCTCGTTCCGCGCGG+AGG | 0.656162 | tig0019825:-117751 | Msa1376620:CDS |
| GGAAGAACAGTGGTCACTGG+TGG | 0.659634 | tig0019825:-117727 | Msa1376620:CDS |
| TGATCCATCCCGATATCCAA+GGG | 0.663726 | tig0019825:-117199 | Msa1376620:CDS |
| TGGAATGGAGCATAGATAAG+TGG | 0.665023 | tig0019825:-111971 | Msa1376620:three_prime_UTR |
| TAAGTTGAAGAACACAGCTG+AGG | 0.667143 | tig0019825:-116727 | Msa1376620:CDS |
| ACCTTGTAAATAAAGTCAGG+AGG | 0.669479 | tig0019825:+112824 | None:intergenic |
| TGTAGCCCAGAAAACTGTCA+AGG | 0.671971 | tig0019825:-115488 | Msa1376620:intron |
| TCATGAAGAATACCAAGAGG+AGG | 0.678825 | tig0019825:-117585 | Msa1376620:CDS |
| TCCTCATGAAGAATACCAAG+AGG | 0.686432 | tig0019825:-117588 | Msa1376620:CDS |
| GATACGGGCTATGCTTCGGG+AGG | 0.690586 | tig0019825:-116388 | Msa1376620:CDS |
| GGGTTGATGGTGATGAGAGG+CGG | 0.691251 | tig0019825:+115208 | None:intergenic |
| CTTTGTAGTAAGGACTACTG+TGG | 0.692211 | tig0019825:+117510 | None:intergenic |
| GTTGGGTTGATGGTGATGAG+AGG | 0.694957 | tig0019825:+115205 | None:intergenic |
| GAAAGGGATGAGTTGTGATG+GGG | 0.698999 | tig0019825:+117431 | None:intergenic |
| ACTTTGGAGGAGATGGACGA+CGG | 0.700638 | tig0019825:-117137 | Msa1376620:CDS |
| AAATGTGTATGACTATCTGT+GGG | 0.700875 | tig0019825:-116700 | Msa1376620:CDS |
| TGATCACTCACTATGCTCAG+AGG | 0.703091 | tig0019825:-112664 | Msa1376620:CDS |
| TTGTAGTAAGGACTACTGTG+GGG | 0.705466 | tig0019825:+117512 | None:intergenic |
| TGGTGATGAGAGGCGGACAG+TGG | 0.709052 | tig0019825:+115215 | None:intergenic |
| GCGCGGAGGAGGAAGAACAG+TGG | 0.710448 | tig0019825:-117737 | Msa1376620:CDS |
| ACTGTTCTTCCTCCTCCGCG+CGG | 0.716406 | tig0019825:+117739 | None:intergenic |
| GTAGTAAGGACTACTGTGGG+GGG | 0.727677 | tig0019825:+117514 | None:intergenic |
| TATGCTCAAAACAAACAAGG+AGG | 0.727720 | tig0019825:-112492 | Msa1376620:CDS |
| ACAATATGTCTCGTTCCGCG+CGG | 0.731066 | tig0019825:-117754 | Msa1376620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAGTAAAAAAAAAAAA+AGG | + | tig0019825:115429-115448 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | tig0019825:115571-115590 | Msa1376620:CDS | 10.0% |
| !!! | TATAAAAAAAATTTTTTGCA+GGG | - | tig0019825:115920-115939 | Msa1376620:intron | 10.0% |
| !!! | AAATAAAGTCTTATATTAAT+TGG | + | tig0019825:117078-117097 | None:intergenic | 10.0% |
| !! | TAATAGTAAAGAAATGTTAT+TGG | - | tig0019825:111923-111942 | Msa1376620:three_prime_UTR | 15.0% |
| !!! | TGTAATCATTTTATATTTGA+AGG | - | tig0019825:113375-113394 | Msa1376620:intron | 15.0% |
| !! | AAACATATTAATTACTTGAT+TGG | + | tig0019825:114394-114413 | None:intergenic | 15.0% |
| !! | TATTATATGCAATTTATTGA+AGG | - | tig0019825:114765-114784 | Msa1376620:intron | 15.0% |
| !! | ATTATATGCAATTTATTGAA+GGG | - | tig0019825:114766-114785 | Msa1376620:intron | 15.0% |
| !!! | TTTTTAATAGAAGAACATTT+TGG | - | tig0019825:114855-114874 | Msa1376620:intron | 15.0% |
| !!! | TGAAGTTTTTTTTTTTTTGT+TGG | - | tig0019825:114905-114924 | Msa1376620:intron | 15.0% |
| !! | AATCATATAATATATGAAGT+TGG | - | tig0019825:114974-114993 | Msa1376620:intron | 15.0% |
| !!! | ACTAATATTGCTTTTATTTT+AGG | - | tig0019825:115494-115513 | Msa1376620:CDS | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | tig0019825:115569-115588 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | tig0019825:115570-115589 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAATTGCA+GGG | + | tig0019825:115630-115649 | None:intergenic | 15.0% |
| !! | AAAACTATAAAAAAAATTGC+AGG | + | tig0019825:115631-115650 | None:intergenic | 15.0% |
| !!! | GCAATTTTTTTTATAGTTTT+TGG | - | tig0019825:115631-115650 | Msa1376620:CDS | 15.0% |
| !!! | CTATAAAAAAAATTTTTTGC+AGG | - | tig0019825:115919-115938 | Msa1376620:intron | 15.0% |
| !! | AACTATAAAAAAAAATTTGC+AGG | - | tig0019825:115981-116000 | Msa1376620:intron | 15.0% |
| !! | ACTATAAAAAAAAATTTGCA+GGG | - | tig0019825:115982-116001 | Msa1376620:intron | 15.0% |
| !! | AACTATAAAAAAAAAATTGC+AGG | - | tig0019825:116043-116062 | Msa1376620:intron | 15.0% |
| !! | ACTATAAAAAAAAAATTGCA+GGG | - | tig0019825:116044-116063 | Msa1376620:intron | 15.0% |
| !! | ATAAAATAAAGGCTAAAATA+TGG | + | tig0019825:116108-116127 | None:intergenic | 15.0% |
| !!! | TTATTTATTTTGTATAATGC+AGG | - | tig0019825:116624-116643 | Msa1376620:intron | 15.0% |
| !! | ATAACAATACATAATGTAAT+AGG | - | tig0019825:116918-116937 | Msa1376620:CDS | 15.0% |
| !!! | ATAAGACTTTATTTATATCT+TGG | - | tig0019825:117084-117103 | Msa1376620:CDS | 15.0% |
| !!! | TTTTCTTTTGCATTTAAATA+TGG | - | tig0019825:117525-117544 | Msa1376620:CDS | 15.0% |
| !!! | ATTTTAACTAATACATTTTG+TGG | + | tig0019825:117573-117592 | None:intergenic | 15.0% |
| !! | GAAATTATATTACCTATGTT+GGG | + | tig0019825:113314-113333 | None:intergenic | 20.0% |
| !! | AGAAATTATATTACCTATGT+TGG | + | tig0019825:113315-113334 | None:intergenic | 20.0% |
| !!! | TTTTTAATCAATTTGCTTGA+TGG | - | tig0019825:113659-113678 | Msa1376620:intron | 20.0% |
| !!! | AGTTATGATTTTTCACTATA+CGG | - | tig0019825:113774-113793 | Msa1376620:intron | 20.0% |
| !! | TCCATACAAAATAACAATAT+TGG | + | tig0019825:114371-114390 | None:intergenic | 20.0% |
| !!! | AAAAGCAATAATTTTGTATG+AGG | - | tig0019825:114449-114468 | Msa1376620:intron | 20.0% |
| !!! | TCAAATTTTTATTTCCTCAT+AGG | + | tig0019825:115001-115020 | None:intergenic | 20.0% |
| !! | TGACAAAAAAATTAACATTC+AGG | + | tig0019825:115286-115305 | None:intergenic | 20.0% |
| !!! | AATTATCGAAAGTTGTTTTA+AGG | + | tig0019825:115376-115395 | None:intergenic | 20.0% |
| !!! | AACTTTCGATAATTCTTTTT+CGG | - | tig0019825:115382-115401 | Msa1376620:intron | 20.0% |
| !!! | TTTTATTTTAGGCTAAAACA+TGG | - | tig0019825:115505-115524 | Msa1376620:CDS | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | + | tig0019825:115658-115677 | None:intergenic | 20.0% |
| !!! | TTCAAAAACAAAAATTTTGC+AGG | - | tig0019825:115887-115906 | Msa1376620:intron | 20.0% |
| !!! | TCAAAAACAAAAATTTTGCA+GGG | - | tig0019825:115888-115907 | Msa1376620:intron | 20.0% |
| !!! | ACTGTACTAAATTGATTTAA+AGG | + | tig0019825:116180-116199 | None:intergenic | 20.0% |
| !!! | TTGTTTAATCTCTAAAAGAA+TGG | - | tig0019825:116283-116302 | Msa1376620:intron | 20.0% |
| !! | TCTAATATTGAAAATCTGTT+TGG | + | tig0019825:116378-116397 | None:intergenic | 20.0% |
| !! | GAAAAATGTATGAGTTTAAA+AGG | - | tig0019825:116398-116417 | Msa1376620:CDS | 20.0% |
| !! | CACTTGAGTATATAATAATA+AGG | + | tig0019825:116603-116622 | None:intergenic | 20.0% |
| !! | AAAAAAAATACTTCTACATC+AGG | + | tig0019825:116799-116818 | None:intergenic | 20.0% |
| !!! | AGTATTTTTTTTAGTATCGT+CGG | - | tig0019825:116807-116826 | Msa1376620:CDS | 20.0% |
| !! | GGATTAAATACTAAAATAAG+AGG | + | tig0019825:117421-117440 | None:intergenic | 20.0% |
| !! | AACTATTGTGAATACTAAAA+AGG | + | tig0019825:117442-117461 | None:intergenic | 20.0% |
| !!! | AACAATTTAGTTCTCATTTT+TGG | - | tig0019825:117709-117728 | Msa1376620:CDS | 20.0% |
| !!! | ACAATTTAGTTCTCATTTTT+GGG | - | tig0019825:117710-117729 | Msa1376620:CDS | 20.0% |
| !! | CAAAAACACAAAATATCTTA+GGG | + | tig0019825:117917-117936 | None:intergenic | 20.0% |
| !! | TCAAAAACACAAAATATCTT+AGG | + | tig0019825:117918-117937 | None:intergenic | 20.0% |
| !! | AAGAAATGTTATTGGTTGAA+TGG | - | tig0019825:111931-111950 | Msa1376620:three_prime_UTR | 25.0% |
| ! | ATCAATGACAAGAGAATAAT+CGG | + | tig0019825:112335-112354 | None:intergenic | 25.0% |
| ! | ACTAATAAATACAGAGACAA+CGG | - | tig0019825:112975-112994 | Msa1376620:intron | 25.0% |
| ! | TTTGTAATTGCTGCATATAT+AGG | - | tig0019825:113335-113354 | Msa1376620:intron | 25.0% |
| ! | GCTAAAAATAGTAGAATACA+AGG | + | tig0019825:113497-113516 | None:intergenic | 25.0% |
| ! | ATGTTTATGTCTGTGTATAT+AGG | - | tig0019825:113517-113536 | Msa1376620:intron | 25.0% |
| !! | ATTTTTCCTTTGCTTCTTAA+TGG | - | tig0019825:113565-113584 | Msa1376620:intron | 25.0% |
| ! | TTAAAAAAGAGAAGATGCAA+TGG | + | tig0019825:113646-113665 | None:intergenic | 25.0% |
| ! | GTATCTAATAAACGAACAAA+TGG | + | tig0019825:113923-113942 | None:intergenic | 25.0% |
| ! | TCGTTTATTAGATACTAGTT+TGG | - | tig0019825:113928-113947 | Msa1376620:intron | 25.0% |
| !!! | GCCAATATTGTTATTTTGTA+TGG | - | tig0019825:114367-114386 | Msa1376620:intron | 25.0% |
| ! | AAATTGTATGATTAGAGGAA+AGG | + | tig0019825:114661-114680 | None:intergenic | 25.0% |
| !!! | AGAGTCATTTTTCGAATTAA+GGG | - | tig0019825:114803-114822 | Msa1376620:intron | 25.0% |
| ! | TCTTCTATTAAAAACGTTGT+TGG | + | tig0019825:114849-114868 | None:intergenic | 25.0% |
| !!! | AGTTCTAGTTACAGTTATTT+TGG | + | tig0019825:115046-115065 | None:intergenic | 25.0% |
| ! | CAAAAGGATGTTTATTCAAA+AGG | + | tig0019825:115098-115117 | None:intergenic | 25.0% |
| ! | TGACAATCTGTTTATTCAAA+AGG | + | tig0019825:115114-115133 | None:intergenic | 25.0% |
| !! | TAAACAGATTGTCAAGATTT+TGG | - | tig0019825:115120-115139 | Msa1376620:intron | 25.0% |
| ! | GAATATATTGTACAAGAAGA+AGG | - | tig0019825:115142-115161 | Msa1376620:intron | 25.0% |
| ! | AAGGAATCAAATTATCACAT+GGG | - | tig0019825:115161-115180 | Msa1376620:intron | 25.0% |
| !!! | CAATCAAGAGTATAGTTTTA+AGG | - | tig0019825:115185-115204 | Msa1376620:intron | 25.0% |
| ! | ATTTGTAAACTCACTTGTTT+CGG | + | tig0019825:115258-115277 | None:intergenic | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | + | tig0019825:115659-115678 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | - | tig0019825:115656-115675 | Msa1376620:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | - | tig0019825:115851-115870 | Msa1376620:intron | 25.0% |
| !!! | AAAACTGACCTATTTTTACA+GGG | - | tig0019825:115952-115971 | Msa1376620:intron | 25.0% |
| ! | TAAAGGCTAAAATATGGTAT+TGG | + | tig0019825:116102-116121 | None:intergenic | 25.0% |
| ! | AGACTGAAGAGATAAAATAA+AGG | + | tig0019825:116119-116138 | None:intergenic | 25.0% |
| ! | TTAATAAAGGAGATAAGAGA+AGG | + | tig0019825:116330-116349 | None:intergenic | 25.0% |
| !!! | AGTTTGTTTTTTGATTCGAT+TGG | + | tig0019825:116434-116453 | None:intergenic | 25.0% |
| !!! | CTGTTCTTTTTTCATTCTAT+TGG | + | tig0019825:116479-116498 | None:intergenic | 25.0% |
| ! | TAGAATGAAAAAAGAACAGT+TGG | - | tig0019825:116480-116499 | Msa1376620:intron | 25.0% |
| !!! | ATGATTTAGTTTTAACTGGA+TGG | - | tig0019825:116663-116682 | Msa1376620:CDS | 25.0% |
| !!! | TGATTTAGTTTTAACTGGAT+GGG | - | tig0019825:116664-116683 | Msa1376620:CDS | 25.0% |
| ! | TTTCTTCACATAAACACTAA+TGG | - | tig0019825:116875-116894 | Msa1376620:CDS | 25.0% |
| ! | AATACCTTGTAAATAAAGTC+AGG | + | tig0019825:116995-117014 | None:intergenic | 25.0% |
| !!! | TCAGTCGTGTTTATTTTTAA+AGG | - | tig0019825:117022-117041 | Msa1376620:CDS | 25.0% |
| ! | TATATTAATTGGAACTGGAA+TGG | + | tig0019825:117067-117086 | None:intergenic | 25.0% |
| !! | AGTCTTATATTAATTGGAAC+TGG | + | tig0019825:117072-117091 | None:intergenic | 25.0% |
| !! | TCTGAAATGTTACAATCATA+TGG | + | tig0019825:117266-117285 | None:intergenic | 25.0% |
| ! | ATGATTGTAACATTTCAGAA+AGG | - | tig0019825:117267-117286 | Msa1376620:CDS | 25.0% |
| ! | ATGAACTACTTAAAAGTTGA+AGG | - | tig0019825:117384-117403 | Msa1376620:CDS | 25.0% |
| ! | ATTCTCCACTTATTCAATTT+GGG | - | tig0019825:117634-117653 | Msa1376620:CDS | 25.0% |
| AATATCATGGATGAAGAAAG+AGG | - | tig0019825:112117-112136 | Msa1376620:intron | 30.0% | |
| ! | GGTATTGAAATTGATGTTGA+GGG | + | tig0019825:112485-112504 | None:intergenic | 30.0% |
| ! | TGGTATTGAAATTGATGTTG+AGG | + | tig0019825:112486-112505 | None:intergenic | 30.0% |
| AAGACAACAAAATCATGAGT+TGG | + | tig0019825:112526-112545 | None:intergenic | 30.0% | |
| GATTCATAATTAACCCTCAA+AGG | + | tig0019825:112724-112743 | None:intergenic | 30.0% | |
| GGAGAGAGTAATTTCAAATT+CGG | - | tig0019825:112822-112841 | Msa1376620:intron | 30.0% | |
| AAATGCTGACATAACAGATT+TGG | - | tig0019825:112867-112886 | Msa1376620:CDS | 30.0% | |
| AATGCTGACATAACAGATTT+GGG | - | tig0019825:112868-112887 | Msa1376620:CDS | 30.0% | |
| AAATGTGTATGACTATCTGT+GGG | - | tig0019825:113113-113132 | Msa1376620:intron | 30.0% | |
| ATGAAGTCTTCCAATATCTT+GGG | + | tig0019825:113153-113172 | None:intergenic | 30.0% | |
| TTGCTGCATATATAGGTTAA+AGG | - | tig0019825:113342-113361 | Msa1376620:intron | 30.0% | |
| TGCATATATAGGTTAAAGGT+GGG | - | tig0019825:113346-113365 | Msa1376620:intron | 30.0% | |
| AGGATATGATAGAGAAAACT+AGG | - | tig0019825:113537-113556 | Msa1376620:intron | 30.0% | |
| ATATAAAGACTTCAGCTTGA+AGG | - | tig0019825:113602-113621 | Msa1376620:intron | 30.0% | |
| ! | TTGCTTGTTAGTTGAACTTA+AGG | + | tig0019825:113706-113725 | None:intergenic | 30.0% |
| AGTCTTAACCACATTACATA+TGG | + | tig0019825:113872-113891 | None:intergenic | 30.0% | |
| TAATGTGGTTAAGACTTAAG+AGG | - | tig0019825:113876-113895 | Msa1376620:intron | 30.0% | |
| ATCTCAATCAACAAACTCTA+GGG | + | tig0019825:114039-114058 | None:intergenic | 30.0% | |
| TATCTCAATCAACAAACTCT+AGG | + | tig0019825:114040-114059 | None:intergenic | 30.0% | |
| CTACTTTCAATTCCTAACTT+GGG | + | tig0019825:114079-114098 | None:intergenic | 30.0% | |
| TGTGATTGTTGAGTTATTCA+AGG | - | tig0019825:114267-114286 | Msa1376620:intron | 30.0% | |
| GAGTTATTCAAGGAAACATA+TGG | - | tig0019825:114277-114296 | Msa1376620:intron | 30.0% | |
| ATTCAAGGAAACATATGGTA+AGG | - | tig0019825:114282-114301 | Msa1376620:intron | 30.0% | |
| ! | AGCAATAATTTTGTATGAGG+CGG | - | tig0019825:114452-114471 | Msa1376620:intron | 30.0% |
| !! | AATCGGTGTTGTATATAAAG+TGG | - | tig0019825:114490-114509 | Msa1376620:intron | 30.0% |
| TTAGAGGAAAGGTAAGTAAT+TGG | + | tig0019825:114650-114669 | None:intergenic | 30.0% | |
| ! | GTCTGAAATTGTATGATTAG+AGG | + | tig0019825:114666-114685 | None:intergenic | 30.0% |
| TGACGAGATTATAAGTGATT+AGG | + | tig0019825:114711-114730 | None:intergenic | 30.0% | |
| !!! | CAGAGTCATTTTTCGAATTA+AGG | - | tig0019825:114802-114821 | Msa1376620:intron | 30.0% |
| !! | AATAGAAGAACATTTTGGAG+AGG | - | tig0019825:114860-114879 | Msa1376620:intron | 30.0% |
| AAACTTGATCCTATCTAATG+AGG | - | tig0019825:114930-114949 | Msa1376620:intron | 30.0% | |
| ! | CAAGTTTTTCCTCATTAGAT+AGG | + | tig0019825:114942-114961 | None:intergenic | 30.0% |
| TGTTTATTCAAAAGGATAGG+AGG | + | tig0019825:115090-115109 | None:intergenic | 30.0% | |
| GGATGTTTATTCAAAAGGAT+AGG | + | tig0019825:115093-115112 | None:intergenic | 30.0% | |
| GAAGGAATCAAATTATCACA+TGG | - | tig0019825:115160-115179 | Msa1376620:intron | 30.0% | |
| !!! | TCGAAAGTTGTTTTAAGGTT+CGG | + | tig0019825:115371-115390 | None:intergenic | 30.0% |
| TTTAGGCTAAAACATGGTAT+TGG | - | tig0019825:115511-115530 | Msa1376620:CDS | 30.0% | |
| !! | TTTTTGGTCCTTGCAAAAAT+AGG | - | tig0019825:115587-115606 | Msa1376620:CDS | 30.0% |
| TGACAAATCATCACATAACT+GGG | + | tig0019825:115696-115715 | None:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | - | tig0019825:115850-115869 | Msa1376620:intron | 30.0% | |
| GACAAATCATCACATAATTG+GGG | - | tig0019825:115852-115871 | Msa1376620:intron | 30.0% | |
| ! | CTGTAAAAATAGGTCAGTTT+TGG | + | tig0019825:115953-115972 | None:intergenic | 30.0% |
| !!! | CAAAACTGACCTATTTTTAC+AGG | - | tig0019825:115951-115970 | Msa1376620:intron | 30.0% |
| !! | TTTTTGGTCCCTGTAAAAAT+AGG | + | tig0019825:115963-115982 | None:intergenic | 30.0% |
| ! | TTGCAAAAATAGGTCAGTTT+TGG | + | tig0019825:116015-116034 | None:intergenic | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+AGG | - | tig0019825:116014-116033 | Msa1376620:intron | 30.0% |
| !! | TTTTTGGTCCTTGCAAAAAT+AGG | + | tig0019825:115587-115606 | None:intergenic | 30.0% |
| ! | CAGACGAGTACTTTTAATAA+AGG | + | tig0019825:116343-116362 | None:intergenic | 30.0% |
| AAGAAATATGCTTTGTCTAG+AGG | - | tig0019825:116521-116540 | Msa1376620:intron | 30.0% | |
| !!! | GACGATGATTTAGTTTTAAC+TGG | - | tig0019825:116659-116678 | Msa1376620:CDS | 30.0% |
| !!! | ACTTTGAAGCTTTTTTCGAA+TGG | + | tig0019825:116951-116970 | None:intergenic | 30.0% |
| CATTATGCTCAAAACAAACA+AGG | - | tig0019825:117318-117337 | Msa1376620:CDS | 30.0% | |
| GATTCTCCACTTATTCAATT+TGG | - | tig0019825:117633-117652 | Msa1376620:CDS | 30.0% | |
| TTCATCCCAAATTGAATAAG+TGG | + | tig0019825:117642-117661 | None:intergenic | 30.0% | |
| TTATAGCAAAATTCATGAGC+TGG | - | tig0019825:117775-117794 | Msa1376620:CDS | 30.0% | |
| AGGAATAGCAAGAGATTGAT+CGG | + | tig0019825:112209-112228 | None:intergenic | 35.0% | |
| TTTGTAGTAAGGACTACTGT+GGG | + | tig0019825:112305-112324 | None:intergenic | 35.0% | |
| TGAGTCGTGATAACAAGAAA+GGG | + | tig0019825:112401-112420 | None:intergenic | 35.0% | |
| TTGAGTCGTGATAACAAGAA+AGG | + | tig0019825:112402-112421 | None:intergenic | 35.0% | |
| ! | ACAACAAAATCATGAGTTGG+TGG | + | tig0019825:112523-112542 | None:intergenic | 35.0% |
| TGACATAACAGATTTGGGTA+TGG | - | tig0019825:112873-112892 | Msa1376620:CDS | 35.0% | |
| TTCTGAACAAACAGTGTCAT+TGG | - | tig0019825:113047-113066 | Msa1376620:intron | 35.0% | |
| TTCTTCAACTTATGCTCACA+AGG | + | tig0019825:113078-113097 | None:intergenic | 35.0% | |
| GAAATGTGTATGACTATCTG+TGG | - | tig0019825:113112-113131 | Msa1376620:intron | 35.0% | |
| GATGAAGTCTTCCAATATCT+TGG | + | tig0019825:113154-113173 | None:intergenic | 35.0% | |
| CTGCATATATAGGTTAAAGG+TGG | - | tig0019825:113345-113364 | Msa1376620:intron | 35.0% | |
| TGGATCTCTTTCCTACATTT+GGG | + | tig0019825:113404-113423 | None:intergenic | 35.0% | |
| ATGGATCTCTTTCCTACATT+TGG | + | tig0019825:113405-113424 | None:intergenic | 35.0% | |
| TAGGAAAGAGATCCATGATA+CGG | - | tig0019825:113409-113428 | Msa1376620:intron | 35.0% | |
| CACATTACATATGGTCTAGT+GGG | + | tig0019825:113863-113882 | None:intergenic | 35.0% | |
| AAGACTTAAGAGGCTGAATT+TGG | - | tig0019825:113886-113905 | Msa1376620:intron | 35.0% | |
| AGACTTAAGAGGCTGAATTT+GGG | - | tig0019825:113887-113906 | Msa1376620:intron | 35.0% | |
| ! | GGTTAAGAAATTAGCCTAAC+CGG | - | tig0019825:113949-113968 | Msa1376620:intron | 35.0% |
| CCTAACTTGGGTAGATAATA+TGG | + | tig0019825:114067-114086 | None:intergenic | 35.0% | |
| CCATATTATCTACCCAAGTT+AGG | - | tig0019825:114064-114083 | Msa1376620:intron | 35.0% | |
| CCTACTTTCAATTCCTAACT+TGG | + | tig0019825:114080-114099 | None:intergenic | 35.0% | |
| CCAAGTTAGGAATTGAAAGT+AGG | - | tig0019825:114077-114096 | Msa1376620:intron | 35.0% | |
| AGAGATTTACCTCAACATGA+TGG | + | tig0019825:114222-114241 | None:intergenic | 35.0% | |
| GTAAATCTCTCAGAAGCAAA+GGG | - | tig0019825:114232-114251 | Msa1376620:intron | 35.0% | |
| ! | TGGCTGGTAGAAAAGTATAA+AGG | - | tig0019825:114510-114529 | Msa1376620:intron | 35.0% |
| ! | GGCTGGTAGAAAAGTATAAA+GGG | - | tig0019825:114511-114530 | Msa1376620:intron | 35.0% |
| TTTGTTGCTCTGATGAATCA+AGG | - | tig0019825:114550-114569 | Msa1376620:intron | 35.0% | |
| ! | TATATGAAGTTGGTCCTATG+AGG | - | tig0019825:114984-115003 | Msa1376620:intron | 35.0% |
| ! | GTAGTTGTTATTCACAGCAA+AGG | - | tig0019825:115454-115473 | Msa1376620:intron | 35.0% |
| !! | CAAAACTGGTCTATTTTGCA+GGG | + | tig0019825:115538-115557 | None:intergenic | 35.0% |
| !!! | AAAACTGGCCTATTTTTGCA+AGG | + | tig0019825:115598-115617 | None:intergenic | 35.0% |
| ! | TTGCAAAAATAGGCCAGTTT+TGG | - | tig0019825:115597-115616 | Msa1376620:CDS | 35.0% |
| GACAAATCATCACATAACTG+GGG | + | tig0019825:115695-115714 | None:intergenic | 35.0% | |
| GTGACAAATCATCACATAAC+TGG | + | tig0019825:115697-115716 | None:intergenic | 35.0% | |
| !!! | TTGTCACTTTTGTGCATATG+TGG | + | tig0019825:115837-115856 | None:intergenic | 35.0% |
| ! | CAAAACTGACCTATTTTGCA+GGG | - | tig0019825:116075-116094 | Msa1376620:intron | 35.0% |
| ! | AAATCTGTTTGGTTCACATC+AGG | + | tig0019825:116367-116386 | None:intergenic | 35.0% |
| AAAGAACAGTTGGAATAAGC+TGG | - | tig0019825:116490-116509 | Msa1376620:intron | 35.0% | |
| ! | TAAGCATAGCTCAGTTGATA+GGG | + | tig0019825:116568-116587 | None:intergenic | 35.0% |
| ATAAGCATAGCTCAGTTGAT+AGG | + | tig0019825:116569-116588 | None:intergenic | 35.0% | |
| TATCAACTGAGCTATGCTTA+TGG | - | tig0019825:116568-116587 | Msa1376620:intron | 35.0% | |
| AACTAAATCATCGTCGTTGA+GGG | + | tig0019825:116654-116673 | None:intergenic | 35.0% | |
| AAACTAAATCATCGTCGTTG+AGG | + | tig0019825:116655-116674 | None:intergenic | 35.0% | |
| !!! | TTTAGTTTTAACTGGATGGG+AGG | - | tig0019825:116667-116686 | Msa1376620:CDS | 35.0% |
| ATTAGCATCACTTACTGTCT+AGG | + | tig0019825:116737-116756 | None:intergenic | 35.0% | |
| AAGAGATAGATAGAACACGA+AGG | + | tig0019825:116768-116787 | None:intergenic | 35.0% | |
| ! | TCCTCCTGACTTTATTTACA+AGG | - | tig0019825:116988-117007 | Msa1376620:CDS | 35.0% |
| ACCTTGTAAATAAAGTCAGG+AGG | + | tig0019825:116992-117011 | None:intergenic | 35.0% | |
| TGGAATGGAATGGAATGAAA+TGG | + | tig0019825:117052-117071 | None:intergenic | 35.0% | |
| TAATTGGAACTGGAATGGAA+TGG | + | tig0019825:117062-117081 | None:intergenic | 35.0% | |
| GGCAGTGAAATCAAATTTGA+AGG | - | tig0019825:117288-117307 | Msa1376620:CDS | 35.0% | |
| TATGCTCAAAACAAACAAGG+AGG | - | tig0019825:117321-117340 | Msa1376620:CDS | 35.0% | |
| !!! | AGTTCTCATTTTTGGGATGT+AGG | - | tig0019825:117717-117736 | Msa1376620:CDS | 35.0% |
| GATCATGTGTAACTTATTGC+TGG | - | tig0019825:117822-117841 | Msa1376620:CDS | 35.0% | |
| TGTGTAACTTATTGCTGGAA+TGG | - | tig0019825:117827-117846 | Msa1376620:CDS | 35.0% | |
| AAGAAATTCCAATGCTGCGA+TGG | + | tig0019825:111874-111893 | None:intergenic | 40.0% | |
| ! | ATCGCAGCATTGGAATTTCT+TGG | - | tig0019825:111873-111892 | Msa1376620:three_prime_UTR | 40.0% |
| GGTGGTTGTCATCAATATCA+TGG | - | tig0019825:112104-112123 | Msa1376620:intron | 40.0% | |
| TTCTGATAGTCCCTACTACA+AGG | - | tig0019825:112177-112196 | Msa1376620:intron | 40.0% | |
| TCTGATAGTCCCTACTACAA+GGG | - | tig0019825:112178-112197 | Msa1376620:intron | 40.0% | |
| TCCTCATGAAGAATACCAAG+AGG | - | tig0019825:112225-112244 | Msa1376620:intron | 40.0% | |
| TCCTCTTGGTATTCTTCATG+AGG | + | tig0019825:112229-112248 | None:intergenic | 40.0% | |
| TCATGAAGAATACCAAGAGG+AGG | - | tig0019825:112228-112247 | Msa1376620:intron | 40.0% | |
| ! | TATTGTTGTTGTCCTCCTCT+TGG | + | tig0019825:112243-112262 | None:intergenic | 40.0% |
| TTGTAGTAAGGACTACTGTG+GGG | + | tig0019825:112304-112323 | None:intergenic | 40.0% | |
| CTTTGTAGTAAGGACTACTG+TGG | + | tig0019825:112306-112325 | None:intergenic | 40.0% | |
| CACAGTAGTCCTTACTACAA+AGG | - | tig0019825:112304-112323 | Msa1376620:intron | 40.0% | |
| TCGGTAAGACCTTTGTAGTA+AGG | + | tig0019825:112316-112335 | None:intergenic | 40.0% | |
| TCTTGTCATTGATGCCTCTT+GGG | - | tig0019825:112342-112361 | Msa1376620:intron | 40.0% | |
| AGAAAGGGATGAGTTGTGAT+GGG | + | tig0019825:112386-112405 | None:intergenic | 40.0% | |
| AAGAAAGGGATGAGTTGTGA+TGG | + | tig0019825:112387-112406 | None:intergenic | 40.0% | |
| ACGACTCAAGTCCATACTAT+AGG | - | tig0019825:112413-112432 | Msa1376620:intron | 40.0% | |
| CGACTCAAGTCCATACTATA+GGG | - | tig0019825:112414-112433 | Msa1376620:intron | 40.0% | |
| GACTCAAGTCCATACTATAG+GGG | - | tig0019825:112415-112434 | Msa1376620:intron | 40.0% | |
| GCAATAAGACCCCTATAGTA+TGG | + | tig0019825:112427-112446 | None:intergenic | 40.0% | |
| !! | AAAATCATGAGTTGGTGGCT+GGG | + | tig0019825:112518-112537 | None:intergenic | 40.0% |
| TCCAGAAGATCAATCACTCA+TGG | - | tig0019825:112552-112571 | Msa1376620:intron | 40.0% | |
| ACCATGAGTGATTGATCTTC+TGG | + | tig0019825:112556-112575 | None:intergenic | 40.0% | |
| AGAACCAGAAGCAACTTTAG+AGG | - | tig0019825:112579-112598 | Msa1376620:intron | 40.0% | |
| ! | AAAGTTGCTTGTGATGACGA+CGG | + | tig0019825:112661-112680 | None:intergenic | 40.0% |
| AGCATAAGAGAAAGCCTTTG+AGG | - | tig0019825:112800-112819 | Msa1376620:intron | 40.0% | |
| GCATAAGAGAAAGCCTTTGA+GGG | - | tig0019825:112801-112820 | Msa1376620:intron | 40.0% | |
| GAAATTACTCTCTCCCTCAA+AGG | + | tig0019825:112817-112836 | None:intergenic | 40.0% | |
| CATAACAGATTTGGGTATGG+AGG | - | tig0019825:112876-112895 | Msa1376620:CDS | 40.0% | |
| ! | AGAGACAACGGATTTGAAAG+AGG | - | tig0019825:112987-113006 | Msa1376620:intron | 40.0% |
| ! | AAGAGGAACTCAGAGACTTT+TGG | - | tig0019825:113004-113023 | Msa1376620:intron | 40.0% |
| ! | TAAGTTGAAGAACACAGCTG+AGG | - | tig0019825:113086-113105 | Msa1376620:intron | 40.0% |
| !! | CAATATCTTGGGCTGGTATT+TGG | + | tig0019825:113142-113161 | None:intergenic | 40.0% |
| CAAATACCAGCCCAAGATAT+TGG | - | tig0019825:113140-113159 | Msa1376620:intron | 40.0% | |
| ATATAGGTTAAAGGTGGGTG+TGG | - | tig0019825:113351-113370 | Msa1376620:intron | 40.0% | |
| GATCTCTTTCCTACATTTGG+GGG | + | tig0019825:113402-113421 | None:intergenic | 40.0% | |
| GGATCTCTTTCCTACATTTG+GGG | + | tig0019825:113403-113422 | None:intergenic | 40.0% | |
| AGGAAAGAGATCCATGATAC+GGG | - | tig0019825:113410-113429 | Msa1376620:intron | 40.0% | |
| TTCCTTTGCTTCTTAATGGC+AGG | - | tig0019825:113569-113588 | Msa1376620:intron | 40.0% | |
| CACTATACGGTAATAGCTAG+AGG | - | tig0019825:113787-113806 | Msa1376620:intron | 40.0% | |
| TAGCTAGAGGATTTGCAAGA+AGG | - | tig0019825:113800-113819 | Msa1376620:intron | 40.0% | |
| CCACATTACATATGGTCTAG+TGG | + | tig0019825:113864-113883 | None:intergenic | 40.0% | |
| CCACTAGACCATATGTAATG+TGG | - | tig0019825:113861-113880 | Msa1376620:intron | 40.0% | |
| ACTTGAGTAACCAATTGTGC+CGG | + | tig0019825:113971-113990 | None:intergenic | 40.0% | |
| TCTCTCCTTTGACATGGATA+GGG | - | tig0019825:114154-114173 | Msa1376620:intron | 40.0% | |
| TTTCTCCCTATCCATGTCAA+AGG | + | tig0019825:114162-114181 | None:intergenic | 40.0% | |
| TTGACATGGATAGGGAGAAA+TGG | - | tig0019825:114162-114181 | Msa1376620:intron | 40.0% | |
| GAAATCACTCCATCATGTTG+AGG | - | tig0019825:114210-114229 | Msa1376620:intron | 40.0% | |
| GGTAAATCTCTCAGAAGCAA+AGG | - | tig0019825:114231-114250 | Msa1376620:intron | 40.0% | |
| GGAGAAGCTATCGTTAGAAT+CGG | - | tig0019825:114473-114492 | Msa1376620:intron | 40.0% | |
| ! | GGTGTTGTATATAAAGTGGC+TGG | - | tig0019825:114494-114513 | Msa1376620:intron | 40.0% |
| GTGGTGCAATATGATTGGAT+TGG | + | tig0019825:114582-114601 | None:intergenic | 40.0% | |
| AACTCACTTGTTTCGGTAAG+TGG | + | tig0019825:115251-115270 | None:intergenic | 40.0% | |
| ! | TTTAAGGTTCGGTAGAGCTT+TGG | + | tig0019825:115360-115379 | None:intergenic | 40.0% |
| !! | CCAAAACTGGTCTATTTTGC+AGG | + | tig0019825:115539-115558 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGACCAGTTT+TGG | - | tig0019825:115536-115555 | Msa1376620:CDS | 40.0% |
| ATCATCACATAATTGGGGTC+AGG | - | tig0019825:115857-115876 | Msa1376620:intron | 40.0% | |
| TCATCACATAATTGGGGTCA+GGG | - | tig0019825:115858-115877 | Msa1376620:intron | 40.0% | |
| ! | CCTGCAAAATAGGTCAGTTT+TGG | + | tig0019825:116077-116096 | None:intergenic | 40.0% |
| ! | CCAAAACTGACCTATTTTGC+AGG | - | tig0019825:116074-116093 | Msa1376620:intron | 40.0% |
| CTGTTTGTTTCACACCAAAC+AGG | - | tig0019825:116137-116156 | Msa1376620:intron | 40.0% | |
| !! | AGTTGATAGGGACAATGTGT+TGG | + | tig0019825:116556-116575 | None:intergenic | 40.0% |
| TGGTTTACATACGCAGTCTT+TGG | - | tig0019825:117104-117123 | Msa1376620:CDS | 40.0% | |
| TAGTGAGTGATCAACTAGAC+TGG | + | tig0019825:117142-117161 | None:intergenic | 40.0% | |
| TGGAATGGAGCATAGATAAG+TGG | - | tig0019825:117842-117861 | Msa1376620:CDS | 40.0% | |
| ATACTTGTGCCGTCTCTAGT+CGG | + | tig0019825:111904-111923 | None:intergenic | 45.0% | |
| AGTAGGGACTATCAGAAGAG+AGG | + | tig0019825:112174-112193 | None:intergenic | 45.0% | |
| TGTAGTAAGGACTACTGTGG+GGG | + | tig0019825:112303-112322 | None:intergenic | 45.0% | |
| CTCTTGTCATTGATGCCTCT+TGG | - | tig0019825:112341-112360 | Msa1376620:intron | 45.0% | |
| GAAAGGGATGAGTTGTGATG+GGG | + | tig0019825:112385-112404 | None:intergenic | 45.0% | |
| !! | CAAAATCATGAGTTGGTGGC+TGG | + | tig0019825:112519-112538 | None:intergenic | 45.0% |
| ! | ACCAGAAGCAACTTTAGAGG+AGG | - | tig0019825:112582-112601 | Msa1376620:intron | 45.0% |
| TTGATCCATCCCGATATCCA+AGG | - | tig0019825:112613-112632 | Msa1376620:intron | 45.0% | |
| TGATCCATCCCGATATCCAA+GGG | - | tig0019825:112614-112633 | Msa1376620:intron | 45.0% | |
| AAAGGCTTCCCTTGGATATC+GGG | + | tig0019825:112625-112644 | None:intergenic | 45.0% | |
| CAAAGGCTTCCCTTGGATAT+CGG | + | tig0019825:112626-112645 | None:intergenic | 45.0% | |
| ATATCCAAGGGAAGCCTTTG+AGG | - | tig0019825:112626-112645 | Msa1376620:intron | 45.0% | |
| TATCCAAGGGAAGCCTTTGA+GGG | - | tig0019825:112627-112646 | Msa1376620:intron | 45.0% | |
| !! | GACGGATTGTTAACCCTCAA+AGG | + | tig0019825:112643-112662 | None:intergenic | 45.0% |
| GTCGTCATCACAAGCAACTT+TGG | - | tig0019825:112660-112679 | Msa1376620:CDS | 45.0% | |
| GTCATCACAAGCAACTTTGG+AGG | - | tig0019825:112663-112682 | Msa1376620:CDS | 45.0% | |
| ! | ACAAGCAACTTTGGAGGAGA+TGG | - | tig0019825:112669-112688 | Msa1376620:CDS | 45.0% |
| GTGTGACGATGTTGTGTTGT+TGG | - | tig0019825:112771-112790 | Msa1376620:intron | 45.0% | |
| AGATTTGGGTATGGAGGAGA+TGG | - | tig0019825:112882-112901 | Msa1376620:intron | 45.0% | |
| AGAGTCGTGCATCACAAGTT+GGG | - | tig0019825:112941-112960 | Msa1376620:intron | 45.0% | |
| ! | GGAACTCAGAGACTTTTGGT+TGG | - | tig0019825:113008-113027 | Msa1376620:intron | 45.0% |
| !! | CTCAGAGACTTTTGGTTGGA+TGG | - | tig0019825:113012-113031 | Msa1376620:intron | 45.0% |
| TTGAAGAACACAGCTGAGGA+AGG | - | tig0019825:113090-113109 | Msa1376620:intron | 45.0% | |
| AGTCTTCCAATATCTTGGGC+TGG | + | tig0019825:113149-113168 | None:intergenic | 45.0% | |
| ! | AGCACTTCAGCTGAAAGCAT+TGG | - | tig0019825:113188-113207 | Msa1376620:intron | 45.0% |
| TTTGAAGGACCCCCAAATGT+AGG | - | tig0019825:113390-113409 | Msa1376620:intron | 45.0% | |
| GACCTGCCATTAAGAAGCAA+AGG | + | tig0019825:113574-113593 | None:intergenic | 45.0% | |
| TGCTTCTTAATGGCAGGTCA+CGG | - | tig0019825:113575-113594 | Msa1376620:intron | 45.0% | |
| ! | ATTAGCCTAACCGGCACAAT+TGG | - | tig0019825:113958-113977 | Msa1376620:intron | 45.0% |
| !! | AGTAACCAATTGTGCCGGTT+AGG | + | tig0019825:113966-113985 | None:intergenic | 45.0% |
| ! | ACAAACTCTAGGGAAACACG+AGG | + | tig0019825:114029-114048 | None:intergenic | 45.0% |
| CTCTCTCCTTTGACATGGAT+AGG | - | tig0019825:114153-114172 | Msa1376620:intron | 45.0% | |
| ! | TGACAGTTTTCTGGGCTACA+AGG | + | tig0019825:114325-114344 | None:intergenic | 45.0% |
| TGTAGCCCAGAAAACTGTCA+AGG | - | tig0019825:114325-114344 | Msa1376620:intron | 45.0% | |
| ! | GCGTACCTTGACAGTTTTCT+GGG | + | tig0019825:114333-114352 | None:intergenic | 45.0% |
| ! | TGCGTACCTTGACAGTTTTC+TGG | + | tig0019825:114334-114353 | None:intergenic | 45.0% |
| GGACAGTGGTGCAATATGAT+TGG | + | tig0019825:114587-114606 | None:intergenic | 45.0% | |
| GAAATGCTGAGTGACCTGTT+GGG | + | tig0019825:114628-114647 | None:intergenic | 45.0% | |
| ! | GGCTTGACGGAGATTGTTTT+TGG | + | tig0019825:115212-115231 | None:intergenic | 45.0% |
| CCAATGAACGAATGGCTTGA+CGG | + | tig0019825:115225-115244 | None:intergenic | 45.0% | |
| TCAAGCCATTCGTTCATTGG+AGG | - | tig0019825:115225-115244 | Msa1376620:CDS | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | tig0019825:115937-115956 | None:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | tig0019825:115937-115956 | None:intergenic | 45.0% | |
| TCATCACATAACTGGGGTCT+GGG | + | tig0019825:115689-115708 | None:intergenic | 45.0% | |
| ATCATCACATAACTGGGGTC+TGG | + | tig0019825:115690-115709 | None:intergenic | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | tig0019825:115526-115545 | None:intergenic | 45.0% |
| TGTTTCACACCAAACAGGAG+AGG | - | tig0019825:116142-116161 | Msa1376620:intron | 45.0% | |
| GTTTCACACCAAACAGGAGA+GGG | - | tig0019825:116143-116162 | Msa1376620:intron | 45.0% | |
| !! | CTAGTTTTCCCTCTCCTGTT+TGG | + | tig0019825:116154-116173 | None:intergenic | 45.0% |
| AGATGAATGTGACCCTTGCA+AGG | + | tig0019825:116208-116227 | None:intergenic | 45.0% | |
| TGATCACTCACTATGCTCAG+AGG | - | tig0019825:117149-117168 | Msa1376620:CDS | 45.0% | |
| TGCTCAGAGGTTACCAAACT+TGG | - | tig0019825:117162-117181 | Msa1376620:CDS | 45.0% | |
| AGAGGTTACCAAACTTGGCA+AGG | - | tig0019825:117167-117186 | Msa1376620:CDS | 45.0% | |
| AGTGTACTCCTTGCCAAGTT+TGG | + | tig0019825:117178-117197 | None:intergenic | 45.0% | |
| TTCATTGAATCCCCGTGAGT+TGG | - | tig0019825:117597-117616 | Msa1376620:CDS | 45.0% | |
| TCATTGAATCCCCGTGAGTT+GGG | - | tig0019825:117598-117617 | Msa1376620:CDS | 45.0% | |
| AGATCCAAAACCCAACTCAC+GGG | + | tig0019825:117611-117630 | None:intergenic | 45.0% | |
| GAGATCCAAAACCCAACTCA+CGG | + | tig0019825:117612-117631 | None:intergenic | 45.0% | |
| !!! | AAAATTTTTTTTATAGTTTT+TGG | + | tig0019825:115915-115934 | None:intergenic | 5.0% |
| !!! | AAATTTTTTTTTATAGTTTT+TGG | + | tig0019825:115979-115998 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTATAGTTTT+TGG | + | tig0019825:116041-116060 | None:intergenic | 5.0% |
| TTGGAAGCTCCGACTAGAGA+CGG | - | tig0019825:111892-111911 | Msa1376620:three_prime_UTR | 50.0% | |
| !! | TGAAAGTACCTAGCCCGACT+CGG | - | tig0019825:111993-112012 | Msa1376620:exon | 50.0% |
| CAACAGATTGCTTCCGAGTC+GGG | + | tig0019825:112009-112028 | None:intergenic | 50.0% | |
| CCAACAGATTGCTTCCGAGT+CGG | + | tig0019825:112010-112029 | None:intergenic | 50.0% | |
| CGAGACATATTGTGGCGAGT+AGG | + | tig0019825:112052-112071 | None:intergenic | 50.0% | |
| ACAATATGTCTCGTTCCGCG+CGG | - | tig0019825:112059-112078 | Msa1376620:intron | 50.0% | |
| TCGGTGAGACCCTTGTAGTA+GGG | + | tig0019825:112190-112209 | None:intergenic | 50.0% | |
| ATCGGTGAGACCCTTGTAGT+AGG | + | tig0019825:112191-112210 | None:intergenic | 50.0% | |
| GGGGATGATGAAAGGAGGAT+AGG | + | tig0019825:112283-112302 | None:intergenic | 50.0% | |
| TACTGTGGGGGGATGATGAA+AGG | + | tig0019825:112291-112310 | None:intergenic | 50.0% | |
| GTAGTAAGGACTACTGTGGG+GGG | + | tig0019825:112302-112321 | None:intergenic | 50.0% | |
| ! | GATGAGTTGTGATGGGGATG+GGG | + | tig0019825:112379-112398 | None:intergenic | 50.0% |
| ! | GGATGAGTTGTGATGGGGAT+GGG | + | tig0019825:112380-112399 | None:intergenic | 50.0% |
| TTGAGGGAGAAGAGAGAGGA+GGG | + | tig0019825:112469-112488 | None:intergenic | 50.0% | |
| GATGTTGAGGGAGAAGAGAG+AGG | + | tig0019825:112473-112492 | None:intergenic | 50.0% | |
| !! | GCCTCCTCTAAAGTTGCTTC+TGG | + | tig0019825:112586-112605 | None:intergenic | 50.0% |
| ! | AGCAACTTTAGAGGAGGCGA+TGG | - | tig0019825:112588-112607 | Msa1376620:intron | 50.0% |
| TAACCCTCAAAGGCTTCCCT+TGG | + | tig0019825:112633-112652 | None:intergenic | 50.0% | |
| ! | ACTTTGGAGGAGATGGACGA+CGG | - | tig0019825:112676-112695 | Msa1376620:CDS | 50.0% |
| ! | GACGACGGTGATGATGTTGA+AGG | - | tig0019825:112691-112710 | Msa1376620:CDS | 50.0% |
| ! | GACGGTGATGATGTTGAAGG+CGG | - | tig0019825:112694-112713 | Msa1376620:CDS | 50.0% |
| ! | ACGGTGATGATGTTGAAGGC+GGG | - | tig0019825:112695-112714 | Msa1376620:CDS | 50.0% |
| GGGTATGGAGGAGATGGAAT+TGG | - | tig0019825:112888-112907 | Msa1376620:intron | 50.0% | |
| GATGCACGACTCTCTCTCAA+TGG | + | tig0019825:112934-112953 | None:intergenic | 50.0% | |
| GAGAGTCGTGCATCACAAGT+TGG | - | tig0019825:112940-112959 | Msa1376620:intron | 50.0% | |
| CACAACTGCATGCCCAACAT+AGG | - | tig0019825:113299-113318 | Msa1376620:intron | 50.0% | |
| ! | CCATGATACGGGCTATGCTT+CGG | - | tig0019825:113421-113440 | Msa1376620:intron | 50.0% |
| ! | CATGATACGGGCTATGCTTC+GGG | - | tig0019825:113422-113441 | Msa1376620:intron | 50.0% |
| !! | GCTATGCTTCGGGAGGTATT+TGG | - | tig0019825:113432-113451 | Msa1376620:intron | 50.0% |
| ATATGGTCTAGTGGGAGCAG+GGG | + | tig0019825:113855-113874 | None:intergenic | 50.0% | |
| CATATGGTCTAGTGGGAGCA+GGG | + | tig0019825:113856-113875 | None:intergenic | 50.0% | |
| ACATATGGTCTAGTGGGAGC+AGG | + | tig0019825:113857-113876 | None:intergenic | 50.0% | |
| CCATGTCAAAGGAGAGAGAC+AGG | + | tig0019825:114151-114170 | None:intergenic | 50.0% | |
| CCTGTCTCTCTCCTTTGACA+TGG | - | tig0019825:114148-114167 | Msa1376620:intron | 50.0% | |
| !! | GTTGGGTTGATGGTGATGAG+AGG | + | tig0019825:114611-114630 | None:intergenic | 50.0% |
| CTCATCACCATCAACCCAAC+AGG | - | tig0019825:114611-114630 | Msa1376620:intron | 50.0% | |
| !! | TGAGTGACCTGTTGGGTTGA+TGG | + | tig0019825:114621-114640 | None:intergenic | 50.0% |
| GGAAATGCTGAGTGACCTGT+TGG | + | tig0019825:114629-114648 | None:intergenic | 50.0% | |
| CCGTCAAGCCATTCGTTCAT+TGG | - | tig0019825:115222-115241 | Msa1376620:CDS | 50.0% | |
| AGTGGCCTCCAATGAACGAA+TGG | + | tig0019825:115233-115252 | None:intergenic | 50.0% | |
| CATCACATAACTGGGGTCTG+GGG | + | tig0019825:115688-115707 | None:intergenic | 50.0% | |
| AGTACAGTACGTGCCTTGCA+AGG | - | tig0019825:116192-116211 | Msa1376620:intron | 50.0% | |
| GTACAGTACGTGCCTTGCAA+GGG | - | tig0019825:116193-116212 | Msa1376620:intron | 50.0% | |
| GTTGGAATAAGCTGGTCGTG+AGG | - | tig0019825:116498-116517 | Msa1376620:intron | 50.0% | |
| !! | AATCCCCGTGAGTTGGGTTT+TGG | - | tig0019825:117604-117623 | Msa1376620:CDS | 50.0% |
| GATCCAAAACCCAACTCACG+GGG | + | tig0019825:117610-117629 | None:intergenic | 50.0% | |
| GGATGTCACCATCGCAGCAT+TGG | - | tig0019825:111863-111882 | Msa1376620:three_prime_UTR | 55.0% | |
| !! | CCGACTCGGAAGCAATCTGT+TGG | - | tig0019825:112007-112026 | Msa1376620:CDS | 55.0% |
| GCGCGGAACGAGACATATTG+TGG | + | tig0019825:112060-112079 | None:intergenic | 55.0% | |
| GGAGGAAGAACAGTGGTCAC+TGG | - | tig0019825:112083-112102 | Msa1376620:intron | 55.0% | |
| GGAAGAACAGTGGTCACTGG+TGG | - | tig0019825:112086-112105 | Msa1376620:intron | 55.0% | |
| TGTGGGGGGATGATGAAAGG+AGG | + | tig0019825:112288-112307 | None:intergenic | 55.0% | |
| ! | TTGTGATGGGGATGGGGATG+AGG | + | tig0019825:112373-112392 | None:intergenic | 55.0% |
| ! | GGGATGAGTTGTGATGGGGA+TGG | + | tig0019825:112381-112400 | None:intergenic | 55.0% |
| AAGAGAGAGGAGGGGGAAGT+AGG | + | tig0019825:112460-112479 | None:intergenic | 55.0% | |
| TGAGGGAGAAGAGAGAGGAG+GGG | + | tig0019825:112468-112487 | None:intergenic | 55.0% | |
| GTTGAGGGAGAAGAGAGAGG+AGG | + | tig0019825:112470-112489 | None:intergenic | 55.0% | |
| !! | ATCATGAGTTGGTGGCTGGG+TGG | + | tig0019825:112515-112534 | None:intergenic | 55.0% |
| GCTTCCCTTGGATATCGGGA+TGG | + | tig0019825:112621-112640 | None:intergenic | 55.0% | |
| TTGAAGGCGGGAAGCCTTTG+AGG | - | tig0019825:112707-112726 | Msa1376620:intron | 55.0% | |
| TGAAGGCGGGAAGCCTTTGA+GGG | - | tig0019825:112708-112727 | Msa1376620:intron | 55.0% | |
| CCGAAGCATAGCCCGTATCA+TGG | + | tig0019825:113424-113443 | None:intergenic | 55.0% | |
| !! | CGGGAGGTATTTGGTGCTGA+CGG | - | tig0019825:113441-113460 | Msa1376620:intron | 55.0% |
| !! | ATTTGGTGCTGACGGAGTGC+AGG | - | tig0019825:113449-113468 | Msa1376620:intron | 55.0% |
| !! | GGGTTGATGGTGATGAGAGG+CGG | + | tig0019825:114608-114627 | None:intergenic | 55.0% |
| GATTGCTTCCGAGTCGGGCT+AGG | + | tig0019825:112004-112023 | None:intergenic | 60.0% | |
| ATATGTCTCGTTCCGCGCGG+AGG | - | tig0019825:112062-112081 | Msa1376620:intron | 60.0% | |
| ACTGTTCTTCCTCCTCCGCG+CGG | + | tig0019825:112077-112096 | None:intergenic | 60.0% | |
| ATGGGGATGGGGATGAGGAG+TGG | + | tig0019825:112368-112387 | None:intergenic | 60.0% | |
| GAGGAGGGGGAAGTAGGAAC+AGG | + | tig0019825:112454-112473 | None:intergenic | 60.0% | |
| GAGGGAGAAGAGAGAGGAGG+GGG | + | tig0019825:112467-112486 | None:intergenic | 60.0% | |
| !! | TGAGTTGGTGGCTGGGTGGT+GGG | + | tig0019825:112511-112530 | None:intergenic | 60.0% |
| !! | ATGAGTTGGTGGCTGGGTGG+TGG | + | tig0019825:112512-112531 | None:intergenic | 60.0% |
| ! | GATACGGGCTATGCTTCGGG+AGG | - | tig0019825:113425-113444 | Msa1376620:intron | 60.0% |
| ! | TGGTGATGAGAGGCGGACAG+TGG | + | tig0019825:114601-114620 | None:intergenic | 60.0% |
| GCGCGGAGGAGGAAGAACAG+TGG | - | tig0019825:112076-112095 | Msa1376620:intron | 65.0% | |
| GGGATGAGGAGTGGCCCAAG+AGG | + | tig0019825:112359-112378 | None:intergenic | 65.0% | |
| !! | AGTTGGTGGCTGGGTGGTGG+GGG | + | tig0019825:112509-112528 | None:intergenic | 65.0% |
| !! | GAGTTGGTGGCTGGGTGGTG+GGG | + | tig0019825:112510-112529 | None:intergenic | 65.0% |
| TGTCTCGTTCCGCGCGGAGG+AGG | - | tig0019825:112065-112084 | Msa1376620:intron | 70.0% | |
| !! | TGGTGGCTGGGTGGTGGGGG+TGG | + | tig0019825:112506-112525 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019825 | gene | 111861 | 117974 | 111861 | ID=Msa1376620;Name=Msa1376620 |
| tig0019825 | mRNA | 111861 | 117974 | 111861 | ID=Msa1376620-mRNA-1;Parent=Msa1376620;Name=Msa1376620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=89|0.88|0.9|1|0.66|0.7|10|141|722 |
| tig0019825 | exon | 111861 | 112063 | 111861 | ID=Msa1376620-mRNA-1:exon:5266;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 112430 | 112550 | 112430 | ID=Msa1376620-mRNA-1:exon:5265;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 112638 | 112715 | 112638 | ID=Msa1376620-mRNA-1:exon:5264;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 112826 | 112895 | 112826 | ID=Msa1376620-mRNA-1:exon:5263;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 114629 | 114708 | 114629 | ID=Msa1376620-mRNA-1:exon:5262;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 115203 | 115381 | 115203 | ID=Msa1376620-mRNA-1:exon:5261;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 115489 | 115660 | 115489 | ID=Msa1376620-mRNA-1:exon:5260;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 116212 | 116244 | 116212 | ID=Msa1376620-mRNA-1:exon:5259;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 116365 | 116478 | 116365 | ID=Msa1376620-mRNA-1:exon:5258;Parent=Msa1376620-mRNA-1 |
| tig0019825 | exon | 116626 | 117974 | 116626 | ID=Msa1376620-mRNA-1:exon:5257;Parent=Msa1376620-mRNA-1 |
| tig0019825 | five_prime_UTR | 117886 | 117974 | 117886 | ID=Msa1376620-mRNA-1:five_prime_utr;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 116626 | 117885 | 116626 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 116365 | 116478 | 116365 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 116212 | 116244 | 116212 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 115489 | 115660 | 115489 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 115203 | 115381 | 115203 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 114629 | 114708 | 114629 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 112826 | 112895 | 112826 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 112638 | 112715 | 112638 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 112430 | 112550 | 112430 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | CDS | 112002 | 112063 | 112002 | ID=Msa1376620-mRNA-1:cds;Parent=Msa1376620-mRNA-1 |
| tig0019825 | three_prime_UTR | 111861 | 112001 | 111861 | ID=Msa1376620-mRNA-1:three_prime_utr;Parent=Msa1376620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
