Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365680 | XP_003604069.1 | 90.276 | 761 | 21 | 3 | 1 | 708 | 40 | 800 | 0.0 | 1393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365680 | sp|Q8VXX4|RFC3_ARATH | 27.128 | 376 | 189 | 11 | 380 | 700 | 2 | 347 | 3.66e-31 | 128 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365680 | G7J8L1 | 90.276 | 761 | 21 | 3 | 1 | 708 | 40 | 800 | 0.0 | 1393 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001480 | Msa1365680 | 0.962213 | 1.305338e-120 | -8.615850e-47 |
| Msa1365680 | Msa1376620 | 0.946891 | 1.938299e-105 | -8.615850e-47 |
| Msa0776150 | Msa1365680 | 0.809472 | 1.860291e-50 | -8.615850e-47 |
| Msa0380330 | Msa1365680 | 0.930093 | 2.702754e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365680 | MtrunA17_Chr3g0145801 | 90.276 | 761 | 21 | 3 | 1 | 708 | 40 | 800 | 0.0 | 1393 |
| Msa1365680 | MtrunA17_Chr6g0460841 | 26.064 | 376 | 193 | 8 | 380 | 700 | 2 | 347 | 1.44e-31 | 126 |
| Msa1365680 | MtrunA17_Chr6g0478631 | 25.798 | 376 | 194 | 8 | 380 | 700 | 2 | 347 | 1.34e-30 | 123 |
| Msa1365680 | MtrunA17_Chr5g0404521 | 29.680 | 219 | 127 | 6 | 380 | 589 | 413 | 613 | 4.01e-23 | 104 |
| Msa1365680 | MtrunA17_Chr4g0057341 | 23.767 | 223 | 136 | 5 | 377 | 598 | 13 | 202 | 1.03e-12 | 70.1 |
| Msa1365680 | MtrunA17_Chr3g0124791 | 21.200 | 250 | 161 | 7 | 353 | 597 | 2 | 220 | 1.84e-11 | 66.2 |
| Msa1365680 | MtrunA17_Chr3g0125031 | 26.457 | 223 | 126 | 10 | 381 | 596 | 11 | 202 | 2.39e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365680 | AT5G27740.1 | 27.128 | 376 | 189 | 11 | 380 | 700 | 2 | 347 | 3.72e-32 | 128 |
| Msa1365680 | AT1G63160.1 | 23.451 | 226 | 139 | 5 | 374 | 598 | 10 | 202 | 3.47e-12 | 68.9 |
Find 193 sgRNAs with CRISPR-Local
Find 417 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACAGATTGTCAAGATTT+TGG | 0.119205 | tig0018384:+6514 | Msa1365680:intron |
| CAATATCTTGGGCTGGTATT+TGG | 0.178587 | tig0018384:-4531 | Msa1365680:intergenic |
| ATGGATCTCTTTCCTACATT+TGG | 0.188482 | tig0018384:-4794 | Msa1365680:intergenic |
| TGGATCTCTTTCCTACATTT+GGG | 0.199080 | tig0018384:-4793 | Msa1365680:intergenic |
| CTCTTGTCATTGATGCCTCT+TGG | 0.266642 | tig0018384:+3733 | Msa1365680:CDS |
| TAATAGTAATGAAATGTTAT+TGG | 0.267557 | tig0018384:+3305 | Msa1365680:five_prime_UTR |
| ATGAGTTGGTGGTTGGGTGG+TGG | 0.280081 | tig0018384:-3901 | Msa1365680:intergenic |
| GCTATGCTTCGGGAGGTATT+TGG | 0.294451 | tig0018384:+4824 | Msa1365680:CDS |
| ACCATGAGTGATTGATCTTC+TGG | 0.294994 | tig0018384:-3945 | Msa1365680:intergenic |
| CAAAGGCTTCCCTTGGATAT+CGG | 0.304910 | tig0018384:-4015 | Msa1365680:intergenic |
| TGAGTTGGTGGTTGGGTGGT+GGG | 0.307171 | tig0018384:-3900 | Msa1365680:intergenic |
| AAATGCTGACAAAACAGATT+TGG | 0.311379 | tig0018384:+4259 | Msa1365680:CDS |
| ATCGCAGCATTGGAATTTCT+TGG | 0.318413 | tig0018384:+3255 | Msa1365680:five_prime_UTR |
| AGTTGGTGGTTGGGTGGTGG+GGG | 0.320610 | tig0018384:-3898 | Msa1365680:intergenic |
| CAAATACCAGCCCAAGATAT+TGG | 0.320785 | tig0018384:+4532 | Msa1365680:CDS |
| AAACAGTCAAATAAGTTGTA+TGG | 0.322845 | tig0018384:+9325 | Msa1365680:three_prime_UTR |
| CGACTCAAGTCCATACTATA+GGG | 0.325434 | tig0018384:+3806 | Msa1365680:CDS |
| GAGTTGGTGGTTGGGTGGTG+GGG | 0.334834 | tig0018384:-3899 | Msa1365680:intergenic |
| GCCTCCTCTAAAGTTGCTTC+TGG | 0.335630 | tig0018384:-3975 | Msa1365680:intergenic |
| TCTTGTCATTGATGCCTCTT+GGG | 0.347119 | tig0018384:+3734 | Msa1365680:CDS |
| AAGAGGAACTCAGAGACTTT+TGG | 0.354701 | tig0018384:+4396 | Msa1365680:CDS |
| CATGATACGGGCTATGCTTC+GGG | 0.356432 | tig0018384:+4814 | Msa1365680:CDS |
| AGTGTACTCCTTGCCAAGTT+TGG | 0.357320 | tig0018384:-8565 | Msa1365680:intergenic |
| GATGAAGTCTTCCAATATCT+TGG | 0.360309 | tig0018384:-4543 | Msa1365680:intergenic |
| ACGACTCAAGTCCATACTAT+AGG | 0.362105 | tig0018384:+3805 | Msa1365680:CDS |
| TGGCTGGTAGAAAAGTATAA+AGG | 0.363077 | tig0018384:+5902 | Msa1365680:CDS |
| GCAATAAGACCCCTATAGTA+TGG | 0.367889 | tig0018384:-3816 | Msa1365680:intergenic |
| GGAGAGAGTAATTTCAAATT+CGG | 0.372169 | tig0018384:+4214 | Msa1365680:CDS |
| ATCAATGACAAGAGAATAAT+CGG | 0.374376 | tig0018384:-3724 | Msa1365680:intergenic |
| TTGCTGCATATATAGGTTAA+AGG | 0.377368 | tig0018384:+4734 | Msa1365680:intron |
| GTGTGACGATGTTGTGTTGT+TGG | 0.396848 | tig0018384:+4163 | Msa1365680:CDS |
| AATGCTGACAAAACAGATTT+GGG | 0.399805 | tig0018384:+4260 | Msa1365680:CDS |
| TGTGATTGTTGAGTTATTCA+AGG | 0.403241 | tig0018384:+5659 | Msa1365680:CDS |
| CAACAGATTGCTTCCGAGTC+GGG | 0.407390 | tig0018384:-3398 | Msa1365680:intergenic |
| TGCTCAGAGGTTACCAAACT+TGG | 0.415261 | tig0018384:+8552 | Msa1365680:CDS |
| GGATGAGTTGTGATGGGGAT+GGG | 0.415651 | tig0018384:-3769 | Msa1365680:intergenic |
| TATTGTTGTTGTCCTCCTCT+TGG | 0.415757 | tig0018384:-3632 | Msa1365680:intergenic |
| TTGTGATGGGGATGGGGATG+AGG | 0.417832 | tig0018384:-3762 | Msa1365680:intergenic |
| CCATGATACGGGCTATGCTT+CGG | 0.425412 | tig0018384:+4813 | Msa1365680:CDS |
| AAAGGCTTCCCTTGGATATC+GGG | 0.427048 | tig0018384:-4014 | Msa1365680:intergenic |
| GATCATGTGTAACTTATTGC+TGG | 0.430474 | tig0018384:+9212 | Msa1365680:exon |
| ATATAAAGACTTCAGCTTGA+AGG | 0.430997 | tig0018384:+4994 | Msa1365680:CDS |
| TGAGTGACCTGTTGGGTTGA+TGG | 0.433348 | tig0018384:-6010 | Msa1365680:intergenic |
| TTCTGAACAAACAGTGTCAT+TGG | 0.436278 | tig0018384:+4439 | Msa1365680:CDS |
| GTCGTCATCACAAGCAACTT+TGG | 0.439281 | tig0018384:+4052 | Msa1365680:CDS |
| TTGAAGGCGGGAAGCCTTTG+AGG | 0.442165 | tig0018384:+4099 | Msa1365680:CDS |
| ATGAACTACTTAAAAGTTGA+AGG | 0.442773 | tig0018384:+8774 | Msa1365680:CDS |
| TTTGTTGCTCTGATGAATCA+AGG | 0.444944 | tig0018384:+5942 | Msa1365680:CDS |
| TTGAGGGAGAAGAGAGAGGA+GGG | 0.450193 | tig0018384:-3858 | Msa1365680:intergenic |
| GAATATATTGTACAAGAAGA+AGG | 0.452115 | tig0018384:+6536 | Msa1365680:CDS |
| AGAACCAGAAGCAACTTTAG+AGG | 0.456198 | tig0018384:+3971 | Msa1365680:CDS |
| GGCTGGTAGAAAAGTATAAA+GGG | 0.456452 | tig0018384:+5903 | Msa1365680:CDS |
| GAGTTATTCAAGGAAACATA+TGG | 0.461638 | tig0018384:+5669 | Msa1365680:CDS |
| GGGTATGGAGGAGATGGAAT+TGG | 0.462012 | tig0018384:+4280 | Msa1365680:CDS |
| GATGAGTTGTGATGGGGATG+GGG | 0.465792 | tig0018384:-3768 | Msa1365680:intergenic |
| ATATCCAAGGGAAGCCTTTG+AGG | 0.469512 | tig0018384:+4018 | Msa1365680:CDS |
| AGATTTGGGTATGGAGGAGA+TGG | 0.470166 | tig0018384:+4274 | Msa1365680:CDS |
| CTCATCACCATCAACCCAAC+AGG | 0.472528 | tig0018384:+6003 | Msa1365680:CDS |
| GGCAGTGAAATCAAATTTGA+AGG | 0.474032 | tig0018384:+8678 | Msa1365680:CDS |
| TCCTCCTGACTTTATTTACA+AGG | 0.475826 | tig0018384:+8378 | Msa1365680:CDS |
| TAACCCTCAAAGGCTTCCCT+TGG | 0.476042 | tig0018384:-4022 | Msa1365680:intergenic |
| GATTCATAATTAACCCTCAA+AGG | 0.476710 | tig0018384:-4113 | Msa1365680:intergenic |
| ATGAAATGTTATTGGTTGAA+TGG | 0.478477 | tig0018384:+3313 | Msa1365680:five_prime_UTR |
| ATCGGTGAGACCCTTGTAGT+AGG | 0.478975 | tig0018384:-3580 | Msa1365680:intergenic |
| TATCCAAGGGAAGCCTTTGA+GGG | 0.480465 | tig0018384:+4019 | Msa1365680:CDS |
| GAGGGAGAAGAGAGAGGAGG+GGG | 0.482978 | tig0018384:-3856 | Msa1365680:intergenic |
| GGATGTCACCATCGCAGCAT+TGG | 0.488463 | tig0018384:+3245 | Msa1365680:five_prime_UTR |
| ATGAAGTCTTCCAATATCTT+GGG | 0.488486 | tig0018384:-4542 | Msa1365680:intergenic |
| ATGGGGATGGGGATGAGGAG+TGG | 0.489564 | tig0018384:-3757 | Msa1365680:intergenic |
| GATTGCTTCCGAGTCGGGCT+AGG | 0.491083 | tig0018384:-3393 | Msa1365680:intergenic |
| TTCTGATAGTCCCTACTACA+AGG | 0.493874 | tig0018384:+3569 | Msa1365680:CDS |
| TTGAGTCGTGATAACAAGAA+AGG | 0.495047 | tig0018384:-3791 | Msa1365680:intergenic |
| TCGGTAAGACCTTTGTAGTA+AGG | 0.495947 | tig0018384:-3705 | Msa1365680:intergenic |
| AGCATAAGAGAAAGCCTTTG+AGG | 0.496667 | tig0018384:+4192 | Msa1365680:CDS |
| AGAGTCGTGCATCACAAGTT+GGG | 0.497633 | tig0018384:+4333 | Msa1365680:CDS |
| CCGAAGCATAGCCCGTATCA+TGG | 0.498734 | tig0018384:-4813 | Msa1365680:intergenic |
| AATACCTTGTAAATAAAGTC+AGG | 0.507334 | tig0018384:-8382 | Msa1365680:intergenic |
| GGATCTCTTTCCTACATTTG+GGG | 0.507455 | tig0018384:-4792 | Msa1365680:intergenic |
| GATCTCTTTCCTACATTTGG+GGG | 0.509171 | tig0018384:-4791 | Msa1365680:intergenic |
| TCCTCTTGGTATTCTTCATG+AGG | 0.509922 | tig0018384:-3618 | Msa1365680:intergenic |
| TTGACATGGATAGGGAGAAA+TGG | 0.509928 | tig0018384:+5554 | Msa1365680:intron |
| AGAAAGGGATGAGTTGTGAT+GGG | 0.510848 | tig0018384:-3775 | Msa1365680:intergenic |
| GAGAGTCGTGCATCACAAGT+TGG | 0.514323 | tig0018384:+4332 | Msa1365680:CDS |
| GGACAGTGGTGCAATATGAT+TGG | 0.515250 | tig0018384:-5976 | Msa1365680:intergenic |
| TTATAGCAAAATTCATGAGC+TGG | 0.516501 | tig0018384:+9165 | Msa1365680:CDS |
| AAGAAATTCCAATGCTGCGA+TGG | 0.521260 | tig0018384:-3253 | Msa1365680:intergenic |
| AACAGTCAAATAAGTTGTAT+GGG | 0.523167 | tig0018384:+9326 | Msa1365680:three_prime_UTR |
| GATGTTGAGGGAGAAGAGAG+AGG | 0.523222 | tig0018384:-3862 | Msa1365680:intergenic |
| TAGGAAAGAGATCCATGATA+CGG | 0.524030 | tig0018384:+4801 | Msa1365680:CDS |
| AAAATCATGAGTTGGTGGTT+GGG | 0.525199 | tig0018384:-3907 | Msa1365680:intergenic |
| ACAAGCAACTTTGGAGGAGA+TGG | 0.527359 | tig0018384:+4061 | Msa1365680:CDS |
| TGTCTCGTTCCGCGCGGAGG+AGG | 0.532527 | tig0018384:+3457 | Msa1365680:CDS |
| ATTTGGTGCTGACGGAGTGC+AGG | 0.532697 | tig0018384:+4841 | Msa1365680:CDS |
| TGAAGGCGGGAAGCCTTTGA+GGG | 0.535197 | tig0018384:+4100 | Msa1365680:CDS |
| GGGATGAGTTGTGATGGGGA+TGG | 0.535474 | tig0018384:-3770 | Msa1365680:intergenic |
| AAGAAAGGGATGAGTTGTGA+TGG | 0.535971 | tig0018384:-3776 | Msa1365680:intergenic |
| CGGGAGGTATTTGGTGCTGA+CGG | 0.536087 | tig0018384:+4833 | Msa1365680:CDS |
| CAAAATCATGAGTTGGTGGT+TGG | 0.537258 | tig0018384:-3908 | Msa1365680:intergenic |
| GAAATTACTCTCTCCCTCAA+AGG | 0.540067 | tig0018384:-4206 | Msa1365680:intergenic |
| GGAGGAAGAACAGTGGTCAC+TGG | 0.540307 | tig0018384:+3475 | Msa1365680:CDS |
| ATTCAAGGAAACATATGGTA+AGG | 0.541100 | tig0018384:+5674 | Msa1365680:CDS |
| TGTGTAACTTATTGCTGGAA+TGG | 0.541736 | tig0018384:+9217 | Msa1365680:exon |
| GCATAAGAGAAAGCCTTTGA+GGG | 0.545630 | tig0018384:+4193 | Msa1365680:CDS |
| CGAGACATATTGTGGCGAGT+AGG | 0.547083 | tig0018384:-3441 | Msa1365680:intergenic |
| TCGGTGAGACCCTTGTAGTA+GGG | 0.547814 | tig0018384:-3579 | Msa1365680:intergenic |
| CTGCATATATAGGTTAAAGG+TGG | 0.548666 | tig0018384:+4737 | Msa1365680:intron |
| GTAAATCTCTCAGAAGCAAA+GGG | 0.548782 | tig0018384:+5624 | Msa1365680:CDS |
| TGAGTCGTGATAACAAGAAA+GGG | 0.550864 | tig0018384:-3790 | Msa1365680:intergenic |
| GGTGGTTGTCATCAATATCA+TGG | 0.553880 | tig0018384:+3496 | Msa1365680:CDS |
| GGTAAATCTCTCAGAAGCAA+AGG | 0.556549 | tig0018384:+5623 | Msa1365680:CDS |
| GGTATTGAAATTGATGTTGA+GGG | 0.558033 | tig0018384:-3874 | Msa1365680:intergenic |
| AAGACAACAAAATCATGAGT+TGG | 0.558224 | tig0018384:-3915 | Msa1365680:intergenic |
| AATCGGTGTTGTATATAAAG+TGG | 0.559508 | tig0018384:+5882 | Msa1365680:CDS |
| GACGGATTGTTAACCCTCAA+AGG | 0.560794 | tig0018384:-4032 | Msa1365680:intergenic |
| ATATAGGTTAAAGGTGGGTG+TGG | 0.561146 | tig0018384:+4743 | Msa1365680:intron |
| AGTCTTCCAATATCTTGGGC+TGG | 0.561256 | tig0018384:-4538 | Msa1365680:intergenic |
| AGGAATAGCAAGAGATTGAT+CGG | 0.562340 | tig0018384:-3598 | Msa1365680:intergenic |
| GGAGAAGCTATCGTTAGAAT+CGG | 0.563580 | tig0018384:+5865 | Msa1365680:CDS |
| AGCACTTCAGCTGAAAGCAT+TGG | 0.564498 | tig0018384:+4580 | Msa1365680:CDS |
| TGGTATTGAAATTGATGTTG+AGG | 0.568829 | tig0018384:-3875 | Msa1365680:intergenic |
| GCGCGGAACGAGACATATTG+TGG | 0.569690 | tig0018384:-3449 | Msa1365680:intergenic |
| TTCTTCAACTTATGCTCACA+AGG | 0.572262 | tig0018384:-4467 | Msa1365680:intergenic |
| TTTGTAGTAAGGACTACTGT+GGG | 0.575498 | tig0018384:-3694 | Msa1365680:intergenic |
| AGAGACAACGGATTTGAAAG+AGG | 0.575889 | tig0018384:+4379 | Msa1365680:CDS |
| AGAGATTTACCTCAACATGA+TGG | 0.576146 | tig0018384:-5611 | Msa1365680:intergenic |
| TGAGGGAGAAGAGAGAGGAG+GGG | 0.578087 | tig0018384:-3857 | Msa1365680:intergenic |
| GATGCACGACTCTCTCTCAA+TGG | 0.579259 | tig0018384:-4323 | Msa1365680:intergenic |
| TTGGAAGCTCCGACTAGAGA+CGG | 0.579785 | tig0018384:+3274 | Msa1365680:five_prime_UTR |
| AATATCATGGATGAAGAAAG+AGG | 0.580077 | tig0018384:+3509 | Msa1365680:CDS |
| GGTGTTGTATATAAAGTGGC+TGG | 0.580355 | tig0018384:+5886 | Msa1365680:CDS |
| CCAACAGATTGCTTCCGAGT+CGG | 0.580520 | tig0018384:-3399 | Msa1365680:intergenic |
| TAGTGAGTGATCAACTAGAC+TGG | 0.585940 | tig0018384:-8529 | Msa1365680:intergenic |
| TCCAGAAGATCAATCACTCA+TGG | 0.586525 | tig0018384:+3944 | Msa1365680:CDS |
| TTGATCCATCCCGATATCCA+AGG | 0.587536 | tig0018384:+4005 | Msa1365680:CDS |
| CAAAACAGATTTGGGTATGG+AGG | 0.589902 | tig0018384:+4268 | Msa1365680:CDS |
| GGGGATGATGAAAGGAGGAT+AGG | 0.590039 | tig0018384:-3672 | Msa1365680:intergenic |
| GTTGAGGGAGAAGAGAGAGG+AGG | 0.592435 | tig0018384:-3859 | Msa1365680:intergenic |
| TGCATATATAGGTTAAAGGT+GGG | 0.594420 | tig0018384:+4738 | Msa1365680:intron |
| TTGAAGAACACAGCTGAGGA+AGG | 0.596267 | tig0018384:+4482 | Msa1365680:CDS |
| GAAATGTGTATGACTATCTG+TGG | 0.596972 | tig0018384:+4504 | Msa1365680:CDS |
| CATTATGCTCAAAACAAACA+AGG | 0.599265 | tig0018384:+8708 | Msa1365680:CDS |
| ACGGTGATGATGTTGAAGGC+GGG | 0.600422 | tig0018384:+4087 | Msa1365680:CDS |
| ATACTTGTGCCGTCTCTAGT+CGG | 0.602090 | tig0018384:-3283 | Msa1365680:intergenic |
| ATCATGAGTTGGTGGTTGGG+TGG | 0.602166 | tig0018384:-3904 | Msa1365680:intergenic |
| AGCAACTTTAGAGGAGGCGA+TGG | 0.602645 | tig0018384:+3980 | Msa1365680:CDS |
| AGGAAAGAGATCCATGATAC+GGG | 0.602954 | tig0018384:+4802 | Msa1365680:CDS |
| TCTGATAGTCCCTACTACAA+GGG | 0.603443 | tig0018384:+3570 | Msa1365680:CDS |
| AGAGGTTACCAAACTTGGCA+AGG | 0.609398 | tig0018384:+8557 | Msa1365680:CDS |
| ACAACAAAATCATGAGTTGG+TGG | 0.611305 | tig0018384:-3912 | Msa1365680:intergenic |
| GTCATCACAAGCAACTTTGG+AGG | 0.613027 | tig0018384:+4055 | Msa1365680:CDS |
| TGAAAGTACCTAGCCCGACT+CGG | 0.614008 | tig0018384:+3385 | Msa1365680:CDS |
| CCGACTCGGAAGCAATCTGT+TGG | 0.618079 | tig0018384:+3399 | Msa1365680:CDS |
| GTGGTGCAATATGATTGGAT+TGG | 0.622821 | tig0018384:-5971 | Msa1365680:intergenic |
| CACAGTAGTCCTTACTACAA+AGG | 0.624786 | tig0018384:+3696 | Msa1365680:CDS |
| GAAATCACTCCATCATGTTG+AGG | 0.626995 | tig0018384:+5602 | Msa1365680:CDS |
| ACTAATAAATACAGAGACAA+CGG | 0.628311 | tig0018384:+4367 | Msa1365680:CDS |
| GACGACGGTGATGATGTTGA+AGG | 0.628956 | tig0018384:+4083 | Msa1365680:CDS |
| AAGGAATCAAATTATCACAT+GGG | 0.629209 | tig0018384:+6555 | Msa1365680:CDS |
| GAAGGAATCAAATTATCACA+TGG | 0.630443 | tig0018384:+6554 | Msa1365680:CDS |
| TGACAAAACAGATTTGGGTA+TGG | 0.631514 | tig0018384:+4265 | Msa1365680:CDS |
| GAAATGCTGAGTGACCTGTT+GGG | 0.632320 | tig0018384:-6017 | Msa1365680:intergenic |
| GCTTCCCTTGGATATCGGGA+TGG | 0.632618 | tig0018384:-4010 | Msa1365680:intergenic |
| TGTAGTAAGGACTACTGTGG+GGG | 0.634101 | tig0018384:-3692 | Msa1365680:intergenic |
| ACCAGAAGCAACTTTAGAGG+AGG | 0.637183 | tig0018384:+3974 | Msa1365680:CDS |
| GACGGTGATGATGTTGAAGG+CGG | 0.638353 | tig0018384:+4086 | Msa1365680:CDS |
| GACTCAAGTCCATACTATAG+GGG | 0.641597 | tig0018384:+3807 | Msa1365680:CDS |
| AAAGTTGCTTGTGATGACGA+CGG | 0.645589 | tig0018384:-4050 | Msa1365680:intergenic |
| GGGATGAGGAGTGGCCCAAG+AGG | 0.649717 | tig0018384:-3748 | Msa1365680:intergenic |
| AGTAGGGACTATCAGAAGAG+AGG | 0.651405 | tig0018384:-3563 | Msa1365680:intergenic |
| ATATGTCTCGTTCCGCGCGG+AGG | 0.656162 | tig0018384:+3454 | Msa1365680:CDS |
| GCTGGAATGGAGCATATAAG+TGG | 0.658523 | tig0018384:+9230 | Msa1365680:three_prime_UTR |
| GGAAGAACAGTGGTCACTGG+TGG | 0.659634 | tig0018384:+3478 | Msa1365680:CDS |
| TGATCCATCCCGATATCCAA+GGG | 0.663726 | tig0018384:+4006 | Msa1365680:CDS |
| TAAGTTGAAGAACACAGCTG+AGG | 0.667143 | tig0018384:+4478 | Msa1365680:CDS |
| ACCTTGTAAATAAAGTCAGG+AGG | 0.669479 | tig0018384:-8379 | Msa1365680:intergenic |
| TGTAGCCCAGAAAACTGTCA+AGG | 0.671971 | tig0018384:+5717 | Msa1365680:CDS |
| TCATGAAGAATACCAAGAGG+AGG | 0.678825 | tig0018384:+3620 | Msa1365680:CDS |
| TCCTCATGAAGAATACCAAG+AGG | 0.686432 | tig0018384:+3617 | Msa1365680:CDS |
| GATACGGGCTATGCTTCGGG+AGG | 0.690586 | tig0018384:+4817 | Msa1365680:CDS |
| GGGTTGATGGTGATGAGAGG+CGG | 0.691251 | tig0018384:-5997 | Msa1365680:intergenic |
| CTTTGTAGTAAGGACTACTG+TGG | 0.692211 | tig0018384:-3695 | Msa1365680:intergenic |
| GTTGGGTTGATGGTGATGAG+AGG | 0.694957 | tig0018384:-6000 | Msa1365680:intergenic |
| GAAAGGGATGAGTTGTGATG+GGG | 0.698999 | tig0018384:-3774 | Msa1365680:intergenic |
| ACTTTGGAGGAGATGGACGA+CGG | 0.700638 | tig0018384:+4068 | Msa1365680:CDS |
| AAATGTGTATGACTATCTGT+GGG | 0.700875 | tig0018384:+4505 | Msa1365680:CDS |
| TGATCACTCACTATGCTCAG+AGG | 0.703091 | tig0018384:+8539 | Msa1365680:CDS |
| TTGTAGTAAGGACTACTGTG+GGG | 0.705466 | tig0018384:-3693 | Msa1365680:intergenic |
| TGGTGATGAGAGGCGGACAG+TGG | 0.709052 | tig0018384:-5990 | Msa1365680:intergenic |
| GCGCGGAGGAGGAAGAACAG+TGG | 0.710448 | tig0018384:+3468 | Msa1365680:CDS |
| ACTGTTCTTCCTCCTCCGCG+CGG | 0.716406 | tig0018384:-3466 | Msa1365680:intergenic |
| GTAGTAAGGACTACTGTGGG+GGG | 0.727677 | tig0018384:-3691 | Msa1365680:intergenic |
| TATGCTCAAAACAAACAAGG+AGG | 0.727720 | tig0018384:+8711 | Msa1365680:CDS |
| ACAATATGTCTCGTTCCGCG+CGG | 0.731066 | tig0018384:+3451 | Msa1365680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTTTTTTTTTTTTTTGT+TGG | + | tig0018384:6299-6318 | Msa1365680:intron | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | tig0018384:6963-6982 | Msa1365680:intron | 10.0% |
| !!! | CAAATTTTTTTTATAGTTTT+TGG | - | tig0018384:7370-7389 | Msa1365680:intergenic | 10.0% |
| !!! | AAATAAAGTCTTATATTAAT+TGG | - | tig0018384:8468-8487 | Msa1365680:intergenic | 10.0% |
| !! | TAATAGTAATGAAATGTTAT+TGG | + | tig0018384:3305-3324 | Msa1365680:five_prime_UTR | 15.0% |
| !!! | TGTAATCATTTTATATTTGA+AGG | + | tig0018384:4767-4786 | Msa1365680:CDS | 15.0% |
| !! | AAACATATTAATTACTTGAT+TGG | - | tig0018384:5786-5805 | Msa1365680:intergenic | 15.0% |
| !! | TATTATATGCAATTTATTGA+AGG | + | tig0018384:6157-6176 | Msa1365680:intron | 15.0% |
| !! | ATTATATGCAATTTATTGAA+GGG | + | tig0018384:6158-6177 | Msa1365680:intron | 15.0% |
| !!! | TTTTTAATAGAAGAACATTT+TGG | + | tig0018384:6247-6266 | Msa1365680:intron | 15.0% |
| !! | AATCATATAATATATGAAGT+TGG | + | tig0018384:6368-6387 | Msa1365680:intron | 15.0% |
| !! | GAAACAAAGTAAAAAAAAAA+AGG | - | tig0018384:6823-6842 | Msa1365680:intergenic | 15.0% |
| !!! | ACTAATATTGCTTTTATTTT+AGG | + | tig0018384:6886-6905 | Msa1365680:intron | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | tig0018384:6961-6980 | Msa1365680:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | tig0018384:6962-6981 | Msa1365680:intergenic | 15.0% |
| !!! | ACTATAAAAAAAAATTTTGC+AGG | + | tig0018384:7310-7329 | Msa1365680:intron | 15.0% |
| !!! | CTATAAAAAAAAATTTTGCA+GGG | + | tig0018384:7311-7330 | Msa1365680:intron | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | + | tig0018384:7371-7390 | Msa1365680:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | + | tig0018384:7372-7391 | Msa1365680:intron | 15.0% |
| !! | AACTATAAAAAAAAAATTGC+AGG | + | tig0018384:7433-7452 | Msa1365680:intron | 15.0% |
| !! | ACTATAAAAAAAAAATTGCA+GGG | + | tig0018384:7434-7453 | Msa1365680:intron | 15.0% |
| !!! | TGTTTTTTTTTTCATTCTAT+TGG | - | tig0018384:7869-7888 | Msa1365680:intergenic | 15.0% |
| !!! | TTATTTATTTTGTATAATGC+AGG | + | tig0018384:8015-8034 | Msa1365680:intron | 15.0% |
| !! | ATAACAATACATAATGTAAT+AGG | + | tig0018384:8308-8327 | Msa1365680:intron | 15.0% |
| !!! | ATAAGACTTTATTTATATCT+TGG | + | tig0018384:8474-8493 | Msa1365680:intron | 15.0% |
| !!! | TTTTCTTTTGCATTTAAATA+TGG | + | tig0018384:8915-8934 | Msa1365680:intron | 15.0% |
| !!! | ATTTTAACTAATACATTTTG+TGG | - | tig0018384:8963-8982 | Msa1365680:intergenic | 15.0% |
| !! | GAAATTATATTACCTATGTT+GGG | - | tig0018384:4706-4725 | Msa1365680:intergenic | 20.0% |
| !! | AGAAATTATATTACCTATGT+TGG | - | tig0018384:4707-4726 | Msa1365680:intergenic | 20.0% |
| !!! | TTTTTAATCAATTTGCTTGA+TGG | + | tig0018384:5051-5070 | Msa1365680:intron | 20.0% |
| !!! | AGTTATGATTTTTCACTATA+CGG | + | tig0018384:5166-5185 | Msa1365680:intron | 20.0% |
| !! | TCCATACAAAATAACAATAT+TGG | - | tig0018384:5763-5782 | Msa1365680:intergenic | 20.0% |
| !!! | AAAAGCAATAATTTTGTATG+AGG | + | tig0018384:5841-5860 | Msa1365680:intron | 20.0% |
| !!! | TCAAATTTTTATTTCCTCAT+AGG | - | tig0018384:6395-6414 | Msa1365680:intergenic | 20.0% |
| !! | TGACAAAAAAATTAACATTC+AGG | - | tig0018384:6680-6699 | Msa1365680:intergenic | 20.0% |
| !!! | AATTATCGAAAGTTGTTTTA+AGG | - | tig0018384:6770-6789 | Msa1365680:intergenic | 20.0% |
| !!! | AACTTTCGATAATTCTTTTT+CGG | + | tig0018384:6776-6795 | Msa1365680:intron | 20.0% |
| !!! | TTTTATTTTAGGCTAAAACA+TGG | + | tig0018384:6897-6916 | Msa1365680:intron | 20.0% |
| !!! | AAACTCTAAAAAAAATTGCA+AGG | - | tig0018384:7022-7041 | Msa1365680:intergenic | 20.0% |
| !!! | GCAATTTTTTTTAGAGTTTT+TGG | + | tig0018384:7023-7042 | Msa1365680:intron | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | - | tig0018384:7050-7069 | Msa1365680:intergenic | 20.0% |
| !!! | TTCAAAAACAAAAATTTTGC+AGG | + | tig0018384:7279-7298 | Msa1365680:intron | 20.0% |
| !!! | TCAAAAACAAAAATTTTGCA+GGG | + | tig0018384:7280-7299 | Msa1365680:intron | 20.0% |
| !! | ATAAAATAAAGGCTAAAGTA+TGG | - | tig0018384:7498-7517 | Msa1365680:intergenic | 20.0% |
| !!! | ACTGTACTAAATTGATTTAA+AGG | - | tig0018384:7570-7589 | Msa1365680:intergenic | 20.0% |
| !!! | TTGTTTAATCTCTAAAAGAA+TGG | + | tig0018384:7673-7692 | Msa1365680:intron | 20.0% |
| !! | TCTAATATTGAAAATCTGTT+TGG | - | tig0018384:7768-7787 | Msa1365680:intergenic | 20.0% |
| !! | GAAAAATGTATGAGTTTAAA+AGG | + | tig0018384:7788-7807 | Msa1365680:intron | 20.0% |
| !! | AGAATGAAAAAAAAAACAGT+TGG | + | tig0018384:7871-7890 | Msa1365680:intron | 20.0% |
| !! | CACTTGAGTATATAATAATA+AGG | - | tig0018384:7994-8013 | Msa1365680:intergenic | 20.0% |
| !! | TAAAAAAATACTTCTACATC+AGG | - | tig0018384:8190-8209 | Msa1365680:intergenic | 20.0% |
| !!! | AAGTATTTTTTTAGTATCGT+CGG | + | tig0018384:8197-8216 | Msa1365680:intron | 20.0% |
| !! | GGATTAAATACTAAAATAAG+AGG | - | tig0018384:8811-8830 | Msa1365680:intergenic | 20.0% |
| !! | AACTATTGTGAATACTAAAA+AGG | - | tig0018384:8832-8851 | Msa1365680:intergenic | 20.0% |
| !!! | AACAATTTAGTTCTCATTTT+TGG | + | tig0018384:9099-9118 | Msa1365680:intron | 20.0% |
| !!! | ACAATTTAGTTCTCATTTTT+GGG | + | tig0018384:9100-9119 | Msa1365680:intron | 20.0% |
| !! | CAAAAACACAAAATATCTTA+GGG | - | tig0018384:9305-9324 | Msa1365680:intergenic | 20.0% |
| !! | TCAAAAACACAAAATATCTT+AGG | - | tig0018384:9306-9325 | Msa1365680:intergenic | 20.0% |
| !! | ATGAAATGTTATTGGTTGAA+TGG | + | tig0018384:3313-3332 | Msa1365680:five_prime_UTR | 25.0% |
| ! | ATCAATGACAAGAGAATAAT+CGG | - | tig0018384:3727-3746 | Msa1365680:intergenic | 25.0% |
| ! | ACTAATAAATACAGAGACAA+CGG | + | tig0018384:4367-4386 | Msa1365680:CDS | 25.0% |
| ! | TTTGTAATTGCTGCATATAT+AGG | + | tig0018384:4727-4746 | Msa1365680:intron | 25.0% |
| ! | GCTAAAAATAGTAGAATACA+AGG | - | tig0018384:4889-4908 | Msa1365680:intergenic | 25.0% |
| ! | ATGTTTATGTCTGTGTATAT+AGG | + | tig0018384:4909-4928 | Msa1365680:intron | 25.0% |
| !! | ATTTTTCCTTTGCTTCTTAA+TGG | + | tig0018384:4957-4976 | Msa1365680:intron | 25.0% |
| ! | TTAAAAAAGAGAAGATGCAA+TGG | - | tig0018384:5038-5057 | Msa1365680:intergenic | 25.0% |
| ! | GTATCTAATAAACGAACAAA+TGG | - | tig0018384:5315-5334 | Msa1365680:intergenic | 25.0% |
| ! | TCGTTTATTAGATACTAGTT+TGG | + | tig0018384:5320-5339 | Msa1365680:intron | 25.0% |
| !!! | GCCAATATTGTTATTTTGTA+TGG | + | tig0018384:5759-5778 | Msa1365680:intron | 25.0% |
| ! | AAATTGTATGATTAGAGGAA+AGG | - | tig0018384:6053-6072 | Msa1365680:intergenic | 25.0% |
| ! | TGACGAAATTATAAGTGATT+AGG | - | tig0018384:6103-6122 | Msa1365680:intergenic | 25.0% |
| !!! | AGAGTCATTTTTCGAATTAA+GGG | + | tig0018384:6195-6214 | Msa1365680:intron | 25.0% |
| ! | TCTTCTATTAAAAACGTTGT+TGG | - | tig0018384:6241-6260 | Msa1365680:intergenic | 25.0% |
| !!! | AGTTCTAGTTACAGTTATTT+TGG | - | tig0018384:6440-6459 | Msa1365680:intergenic | 25.0% |
| ! | CAAAAGGATGTTTATTCAAA+AGG | - | tig0018384:6492-6511 | Msa1365680:intergenic | 25.0% |
| ! | TGACAATCTGTTTATTCAAA+AGG | - | tig0018384:6508-6527 | Msa1365680:intergenic | 25.0% |
| !! | TAAACAGATTGTCAAGATTT+TGG | + | tig0018384:6514-6533 | Msa1365680:intron | 25.0% |
| ! | GAATATATTGTACAAGAAGA+AGG | + | tig0018384:6536-6555 | Msa1365680:CDS | 25.0% |
| ! | AAGGAATCAAATTATCACAT+GGG | + | tig0018384:6555-6574 | Msa1365680:CDS | 25.0% |
| !!! | CAATCAAGAGTATAGTTTTA+AGG | + | tig0018384:6579-6598 | Msa1365680:CDS | 25.0% |
| ! | ATTTGTAAACTCACTTGTTT+CGG | - | tig0018384:6652-6671 | Msa1365680:intergenic | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | - | tig0018384:7051-7070 | Msa1365680:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | + | tig0018384:7048-7067 | Msa1365680:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | + | tig0018384:7243-7262 | Msa1365680:intron | 25.0% |
| ! | AGACTGAAGAGATAAAATAA+AGG | - | tig0018384:7509-7528 | Msa1365680:intergenic | 25.0% |
| ! | TTAATAAAGGAGATAAGAGA+AGG | - | tig0018384:7720-7739 | Msa1365680:intergenic | 25.0% |
| !!! | AGTTTGTTTTTTCATTCGAT+TGG | - | tig0018384:7824-7843 | Msa1365680:intergenic | 25.0% |
| !!! | ATGATTTAGTTTTAACTGGA+TGG | + | tig0018384:8054-8073 | Msa1365680:intron | 25.0% |
| !!! | TGATTTAGTTTTAACTGGAT+GGG | + | tig0018384:8055-8074 | Msa1365680:intron | 25.0% |
| ! | TTTCTTCACATAAACACTAA+TGG | + | tig0018384:8265-8284 | Msa1365680:intron | 25.0% |
| ! | AATACCTTGTAAATAAAGTC+AGG | - | tig0018384:8385-8404 | Msa1365680:intergenic | 25.0% |
| !!! | TCTGTCGTGTTTATTTTTAA+AGG | + | tig0018384:8412-8431 | Msa1365680:intron | 25.0% |
| ! | TATATTAATTGGAACTGGAA+TGG | - | tig0018384:8457-8476 | Msa1365680:intergenic | 25.0% |
| !! | AGTCTTATATTAATTGGAAC+TGG | - | tig0018384:8462-8481 | Msa1365680:intergenic | 25.0% |
| !! | TCTGAAATGTTACAATCATA+TGG | - | tig0018384:8656-8675 | Msa1365680:intergenic | 25.0% |
| ! | ATGATTGTAACATTTCAGAA+AGG | + | tig0018384:8657-8676 | Msa1365680:intron | 25.0% |
| ! | ATGAACTACTTAAAAGTTGA+AGG | + | tig0018384:8774-8793 | Msa1365680:CDS | 25.0% |
| ! | ATTCTCCACTTATTCAATTT+GGG | + | tig0018384:9024-9043 | Msa1365680:intron | 25.0% |
| ! | AAACAGTCAAATAAGTTGTA+TGG | + | tig0018384:9325-9344 | Msa1365680:three_prime_UTR | 25.0% |
| ! | AACAGTCAAATAAGTTGTAT+GGG | + | tig0018384:9326-9345 | Msa1365680:three_prime_UTR | 25.0% |
| AATATCATGGATGAAGAAAG+AGG | + | tig0018384:3509-3528 | Msa1365680:CDS | 30.0% | |
| ! | GGTATTGAAATTGATGTTGA+GGG | - | tig0018384:3877-3896 | Msa1365680:intergenic | 30.0% |
| ! | TGGTATTGAAATTGATGTTG+AGG | - | tig0018384:3878-3897 | Msa1365680:intergenic | 30.0% |
| AAGACAACAAAATCATGAGT+TGG | - | tig0018384:3918-3937 | Msa1365680:intergenic | 30.0% | |
| GATTCATAATTAACCCTCAA+AGG | - | tig0018384:4116-4135 | Msa1365680:intergenic | 30.0% | |
| GGAGAGAGTAATTTCAAATT+CGG | + | tig0018384:4214-4233 | Msa1365680:CDS | 30.0% | |
| AAATGCTGACAAAACAGATT+TGG | + | tig0018384:4259-4278 | Msa1365680:CDS | 30.0% | |
| AATGCTGACAAAACAGATTT+GGG | + | tig0018384:4260-4279 | Msa1365680:CDS | 30.0% | |
| AAATGTGTATGACTATCTGT+GGG | + | tig0018384:4505-4524 | Msa1365680:CDS | 30.0% | |
| ATGAAGTCTTCCAATATCTT+GGG | - | tig0018384:4545-4564 | Msa1365680:intergenic | 30.0% | |
| TTGCTGCATATATAGGTTAA+AGG | + | tig0018384:4734-4753 | Msa1365680:intron | 30.0% | |
| TGCATATATAGGTTAAAGGT+GGG | + | tig0018384:4738-4757 | Msa1365680:intron | 30.0% | |
| AGGATATGATAGAGAAAACT+AGG | + | tig0018384:4929-4948 | Msa1365680:intron | 30.0% | |
| ATATAAAGACTTCAGCTTGA+AGG | + | tig0018384:4994-5013 | Msa1365680:CDS | 30.0% | |
| ! | TTGCTTGTTAGTTGAACTTA+AGG | - | tig0018384:5098-5117 | Msa1365680:intergenic | 30.0% |
| AGTCTTAACCACATTACATA+TGG | - | tig0018384:5264-5283 | Msa1365680:intergenic | 30.0% | |
| TAATGTGGTTAAGACTTAAG+AGG | + | tig0018384:5268-5287 | Msa1365680:intron | 30.0% | |
| ATCTCAATCAACAAACTCTA+GGG | - | tig0018384:5431-5450 | Msa1365680:intergenic | 30.0% | |
| TATCTCAATCAACAAACTCT+AGG | - | tig0018384:5432-5451 | Msa1365680:intergenic | 30.0% | |
| CTACTTTCAATTCCTAACTT+GGG | - | tig0018384:5471-5490 | Msa1365680:intergenic | 30.0% | |
| TGTGATTGTTGAGTTATTCA+AGG | + | tig0018384:5659-5678 | Msa1365680:CDS | 30.0% | |
| GAGTTATTCAAGGAAACATA+TGG | + | tig0018384:5669-5688 | Msa1365680:CDS | 30.0% | |
| ATTCAAGGAAACATATGGTA+AGG | + | tig0018384:5674-5693 | Msa1365680:CDS | 30.0% | |
| ! | AGCAATAATTTTGTATGAGG+CGG | + | tig0018384:5844-5863 | Msa1365680:intron | 30.0% |
| !! | AATCGGTGTTGTATATAAAG+TGG | + | tig0018384:5882-5901 | Msa1365680:CDS | 30.0% |
| TTAGAGGAAAGGTAAGTAAT+TGG | - | tig0018384:6042-6061 | Msa1365680:intergenic | 30.0% | |
| ! | GTCTGAAATTGTATGATTAG+AGG | - | tig0018384:6058-6077 | Msa1365680:intergenic | 30.0% |
| !!! | CAGAGTCATTTTTCGAATTA+AGG | + | tig0018384:6194-6213 | Msa1365680:intron | 30.0% |
| !! | AATAGAAGAACATTTTGGAG+AGG | + | tig0018384:6252-6271 | Msa1365680:intron | 30.0% |
| AAACTTGATCCTATCTAATG+AGG | + | tig0018384:6324-6343 | Msa1365680:intron | 30.0% | |
| ! | CAAGTTTTTCCTCATTAGAT+AGG | - | tig0018384:6336-6355 | Msa1365680:intergenic | 30.0% |
| TGTTTATTCAAAAGGATAGG+AGG | - | tig0018384:6484-6503 | Msa1365680:intergenic | 30.0% | |
| GGATGTTTATTCAAAAGGAT+AGG | - | tig0018384:6487-6506 | Msa1365680:intergenic | 30.0% | |
| GAAGGAATCAAATTATCACA+TGG | + | tig0018384:6554-6573 | Msa1365680:CDS | 30.0% | |
| !!! | TCGAAAGTTGTTTTAAGGTT+CGG | - | tig0018384:6765-6784 | Msa1365680:intergenic | 30.0% |
| TTTAGGCTAAAACATGGTAT+TGG | + | tig0018384:6903-6922 | Msa1365680:intron | 30.0% | |
| !! | TTTTTGGTCCTTGCAAAAAT+AGG | + | tig0018384:6979-6998 | Msa1365680:intron | 30.0% |
| TGACAAATCATCACATAACT+GGG | - | tig0018384:7088-7107 | Msa1365680:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | + | tig0018384:7242-7261 | Msa1365680:intron | 30.0% | |
| GACAAATCATCACATAATTG+GGG | + | tig0018384:7244-7263 | Msa1365680:intron | 30.0% | |
| ! | TTGCAAAAATAGGTCAGTTT+TGG | - | tig0018384:7405-7424 | Msa1365680:intergenic | 30.0% |
| !!! | AAAACTGACCTATTTTTGCA+AGG | + | tig0018384:7404-7423 | Msa1365680:intron | 30.0% |
| !! | TTTTTGGTCCTTGCAAAAAT+AGG | - | tig0018384:6979-6998 | Msa1365680:intergenic | 30.0% |
| ! | TCTGCAAAATATGTCAGTTT+TGG | - | tig0018384:7467-7486 | Msa1365680:intergenic | 30.0% |
| TAAAGGCTAAAGTATGGTAT+TGG | - | tig0018384:7492-7511 | Msa1365680:intergenic | 30.0% | |
| ! | CAGACGAGTACTTTTAATAA+AGG | - | tig0018384:7733-7752 | Msa1365680:intergenic | 30.0% |
| AAAAAACAGTTGGAATAAGC+TGG | + | tig0018384:7881-7900 | Msa1365680:intron | 30.0% | |
| AAGAAATATGCTTTGTCTAG+AGG | + | tig0018384:7912-7931 | Msa1365680:intron | 30.0% | |
| !!! | GACGATGATTTAGTTTTAAC+TGG | + | tig0018384:8050-8069 | Msa1365680:intron | 30.0% |
| !!! | ACTTTGAAGCTTTTTTCGAA+TGG | - | tig0018384:8341-8360 | Msa1365680:intergenic | 30.0% |
| CATTATGCTCAAAACAAACA+AGG | + | tig0018384:8708-8727 | Msa1365680:CDS | 30.0% | |
| GATTCTCCACTTATTCAATT+TGG | + | tig0018384:9023-9042 | Msa1365680:intron | 30.0% | |
| TTCTCCACTTATTCAATTTG+GGG | + | tig0018384:9025-9044 | Msa1365680:intron | 30.0% | |
| TTATAGCAAAATTCATGAGC+TGG | + | tig0018384:9165-9184 | Msa1365680:CDS | 30.0% | |
| AGGAATAGCAAGAGATTGAT+CGG | - | tig0018384:3601-3620 | Msa1365680:intergenic | 35.0% | |
| TTTGTAGTAAGGACTACTGT+GGG | - | tig0018384:3697-3716 | Msa1365680:intergenic | 35.0% | |
| TGAGTCGTGATAACAAGAAA+GGG | - | tig0018384:3793-3812 | Msa1365680:intergenic | 35.0% | |
| TTGAGTCGTGATAACAAGAA+AGG | - | tig0018384:3794-3813 | Msa1365680:intergenic | 35.0% | |
| !! | AAAATCATGAGTTGGTGGTT+GGG | - | tig0018384:3910-3929 | Msa1365680:intergenic | 35.0% |
| ! | ACAACAAAATCATGAGTTGG+TGG | - | tig0018384:3915-3934 | Msa1365680:intergenic | 35.0% |
| TGACAAAACAGATTTGGGTA+TGG | + | tig0018384:4265-4284 | Msa1365680:CDS | 35.0% | |
| TTCTGAACAAACAGTGTCAT+TGG | + | tig0018384:4439-4458 | Msa1365680:CDS | 35.0% | |
| TTCTTCAACTTATGCTCACA+AGG | - | tig0018384:4470-4489 | Msa1365680:intergenic | 35.0% | |
| GAAATGTGTATGACTATCTG+TGG | + | tig0018384:4504-4523 | Msa1365680:CDS | 35.0% | |
| GATGAAGTCTTCCAATATCT+TGG | - | tig0018384:4546-4565 | Msa1365680:intergenic | 35.0% | |
| CTGCATATATAGGTTAAAGG+TGG | + | tig0018384:4737-4756 | Msa1365680:intron | 35.0% | |
| TGGATCTCTTTCCTACATTT+GGG | - | tig0018384:4796-4815 | Msa1365680:intergenic | 35.0% | |
| ATGGATCTCTTTCCTACATT+TGG | - | tig0018384:4797-4816 | Msa1365680:intergenic | 35.0% | |
| TAGGAAAGAGATCCATGATA+CGG | + | tig0018384:4801-4820 | Msa1365680:CDS | 35.0% | |
| CACATTACATATGGTCTAGT+GGG | - | tig0018384:5255-5274 | Msa1365680:intergenic | 35.0% | |
| AAGACTTAAGAGGCTGAATT+TGG | + | tig0018384:5278-5297 | Msa1365680:intron | 35.0% | |
| AGACTTAAGAGGCTGAATTT+GGG | + | tig0018384:5279-5298 | Msa1365680:intron | 35.0% | |
| ! | GGTTAAGAAATTAGCCTAAC+CGG | + | tig0018384:5341-5360 | Msa1365680:intron | 35.0% |
| CCTAACTTGGGTAGATAATA+TGG | - | tig0018384:5459-5478 | Msa1365680:intergenic | 35.0% | |
| CCATATTATCTACCCAAGTT+AGG | + | tig0018384:5456-5475 | Msa1365680:intron | 35.0% | |
| CCTACTTTCAATTCCTAACT+TGG | - | tig0018384:5472-5491 | Msa1365680:intergenic | 35.0% | |
| CCAAGTTAGGAATTGAAAGT+AGG | + | tig0018384:5469-5488 | Msa1365680:intron | 35.0% | |
| AGAGATTTACCTCAACATGA+TGG | - | tig0018384:5614-5633 | Msa1365680:intergenic | 35.0% | |
| GTAAATCTCTCAGAAGCAAA+GGG | + | tig0018384:5624-5643 | Msa1365680:CDS | 35.0% | |
| ! | TGGCTGGTAGAAAAGTATAA+AGG | + | tig0018384:5902-5921 | Msa1365680:CDS | 35.0% |
| ! | GGCTGGTAGAAAAGTATAAA+GGG | + | tig0018384:5903-5922 | Msa1365680:CDS | 35.0% |
| TTTGTTGCTCTGATGAATCA+AGG | + | tig0018384:5942-5961 | Msa1365680:CDS | 35.0% | |
| ! | TATATGAAGTTGGTCCTATG+AGG | + | tig0018384:6378-6397 | Msa1365680:intron | 35.0% |
| ! | CTAGTTGTTATTCACAGCAA+AGG | + | tig0018384:6846-6865 | Msa1365680:intron | 35.0% |
| !! | CAAAACTGGCCTATTTTACA+GGG | - | tig0018384:6930-6949 | Msa1365680:intergenic | 35.0% |
| !!! | AAAACTGGCCTATTTTTGCA+AGG | - | tig0018384:7343-7362 | Msa1365680:intergenic | 35.0% |
| ! | TTGCAAAAATAGGCCAGTTT+TGG | + | tig0018384:6989-7008 | Msa1365680:intron | 35.0% |
| GACAAATCATCACATAACTG+GGG | - | tig0018384:7087-7106 | Msa1365680:intergenic | 35.0% | |
| GTGACAAATCATCACATAAC+TGG | - | tig0018384:7089-7108 | Msa1365680:intergenic | 35.0% | |
| !!! | TTGTCACTTTTGTGCATATG+TGG | - | tig0018384:7229-7248 | Msa1365680:intergenic | 35.0% |
| !!! | AAAACTGGCCTATTTTTGCA+GGG | + | tig0018384:7343-7362 | Msa1365680:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | tig0018384:7039-7058 | Msa1365680:intergenic | 35.0% |
| ! | AAATCTGTTTGGTTCACATC+AGG | - | tig0018384:7757-7776 | Msa1365680:intergenic | 35.0% |
| ! | TAAGCATAGCTCAGTTGATA+GGG | - | tig0018384:7959-7978 | Msa1365680:intergenic | 35.0% |
| ATAAGCATAGCTCAGTTGAT+AGG | - | tig0018384:7960-7979 | Msa1365680:intergenic | 35.0% | |
| TATCAACTGAGCTATGCTTA+TGG | + | tig0018384:7959-7978 | Msa1365680:intron | 35.0% | |
| AACTAAATCATCGTCGTTGA+GGG | - | tig0018384:8045-8064 | Msa1365680:intergenic | 35.0% | |
| AAACTAAATCATCGTCGTTG+AGG | - | tig0018384:8046-8065 | Msa1365680:intergenic | 35.0% | |
| !!! | TTTAGTTTTAACTGGATGGG+AGG | + | tig0018384:8058-8077 | Msa1365680:intron | 35.0% |
| ATTAGCATCACTTACTGTCT+AGG | - | tig0018384:8128-8147 | Msa1365680:intergenic | 35.0% | |
| AAGAGATAGATAGAACACGA+AGG | - | tig0018384:8159-8178 | Msa1365680:intergenic | 35.0% | |
| ! | TCCTCCTGACTTTATTTACA+AGG | + | tig0018384:8378-8397 | Msa1365680:CDS | 35.0% |
| ACCTTGTAAATAAAGTCAGG+AGG | - | tig0018384:8382-8401 | Msa1365680:intergenic | 35.0% | |
| TGGAATGGAATGGAATGAAA+TGG | - | tig0018384:8442-8461 | Msa1365680:intergenic | 35.0% | |
| TAATTGGAACTGGAATGGAA+TGG | - | tig0018384:8452-8471 | Msa1365680:intergenic | 35.0% | |
| GGCAGTGAAATCAAATTTGA+AGG | + | tig0018384:8678-8697 | Msa1365680:CDS | 35.0% | |
| TATGCTCAAAACAAACAAGG+AGG | + | tig0018384:8711-8730 | Msa1365680:CDS | 35.0% | |
| TTCACCCCAAATTGAATAAG+TGG | - | tig0018384:9032-9051 | Msa1365680:intergenic | 35.0% | |
| !!! | AGTTCTCATTTTTGGGATGT+AGG | + | tig0018384:9107-9126 | Msa1365680:intron | 35.0% |
| GATCATGTGTAACTTATTGC+TGG | + | tig0018384:9212-9231 | Msa1365680:exon | 35.0% | |
| TGTGTAACTTATTGCTGGAA+TGG | + | tig0018384:9217-9236 | Msa1365680:exon | 35.0% | |
| AAGAAATTCCAATGCTGCGA+TGG | - | tig0018384:3256-3275 | Msa1365680:intergenic | 40.0% | |
| ! | ATCGCAGCATTGGAATTTCT+TGG | + | tig0018384:3255-3274 | Msa1365680:five_prime_UTR | 40.0% |
| GGTGGTTGTCATCAATATCA+TGG | + | tig0018384:3496-3515 | Msa1365680:CDS | 40.0% | |
| TTCTGATAGTCCCTACTACA+AGG | + | tig0018384:3569-3588 | Msa1365680:CDS | 40.0% | |
| TCTGATAGTCCCTACTACAA+GGG | + | tig0018384:3570-3589 | Msa1365680:CDS | 40.0% | |
| TCCTCATGAAGAATACCAAG+AGG | + | tig0018384:3617-3636 | Msa1365680:CDS | 40.0% | |
| TCCTCTTGGTATTCTTCATG+AGG | - | tig0018384:3621-3640 | Msa1365680:intergenic | 40.0% | |
| TCATGAAGAATACCAAGAGG+AGG | + | tig0018384:3620-3639 | Msa1365680:CDS | 40.0% | |
| ! | TATTGTTGTTGTCCTCCTCT+TGG | - | tig0018384:3635-3654 | Msa1365680:intergenic | 40.0% |
| TTGTAGTAAGGACTACTGTG+GGG | - | tig0018384:3696-3715 | Msa1365680:intergenic | 40.0% | |
| CTTTGTAGTAAGGACTACTG+TGG | - | tig0018384:3698-3717 | Msa1365680:intergenic | 40.0% | |
| CACAGTAGTCCTTACTACAA+AGG | + | tig0018384:3696-3715 | Msa1365680:CDS | 40.0% | |
| TCGGTAAGACCTTTGTAGTA+AGG | - | tig0018384:3708-3727 | Msa1365680:intergenic | 40.0% | |
| TCTTGTCATTGATGCCTCTT+GGG | + | tig0018384:3734-3753 | Msa1365680:CDS | 40.0% | |
| AGAAAGGGATGAGTTGTGAT+GGG | - | tig0018384:3778-3797 | Msa1365680:intergenic | 40.0% | |
| AAGAAAGGGATGAGTTGTGA+TGG | - | tig0018384:3779-3798 | Msa1365680:intergenic | 40.0% | |
| ACGACTCAAGTCCATACTAT+AGG | + | tig0018384:3805-3824 | Msa1365680:CDS | 40.0% | |
| CGACTCAAGTCCATACTATA+GGG | + | tig0018384:3806-3825 | Msa1365680:CDS | 40.0% | |
| GACTCAAGTCCATACTATAG+GGG | + | tig0018384:3807-3826 | Msa1365680:CDS | 40.0% | |
| GCAATAAGACCCCTATAGTA+TGG | - | tig0018384:3819-3838 | Msa1365680:intergenic | 40.0% | |
| !! | CAAAATCATGAGTTGGTGGT+TGG | - | tig0018384:3911-3930 | Msa1365680:intergenic | 40.0% |
| TCCAGAAGATCAATCACTCA+TGG | + | tig0018384:3944-3963 | Msa1365680:CDS | 40.0% | |
| ACCATGAGTGATTGATCTTC+TGG | - | tig0018384:3948-3967 | Msa1365680:intergenic | 40.0% | |
| AGAACCAGAAGCAACTTTAG+AGG | + | tig0018384:3971-3990 | Msa1365680:CDS | 40.0% | |
| ! | AAAGTTGCTTGTGATGACGA+CGG | - | tig0018384:4053-4072 | Msa1365680:intergenic | 40.0% |
| AGCATAAGAGAAAGCCTTTG+AGG | + | tig0018384:4192-4211 | Msa1365680:CDS | 40.0% | |
| GCATAAGAGAAAGCCTTTGA+GGG | + | tig0018384:4193-4212 | Msa1365680:CDS | 40.0% | |
| GAAATTACTCTCTCCCTCAA+AGG | - | tig0018384:4209-4228 | Msa1365680:intergenic | 40.0% | |
| CAAAACAGATTTGGGTATGG+AGG | + | tig0018384:4268-4287 | Msa1365680:CDS | 40.0% | |
| ! | AGAGACAACGGATTTGAAAG+AGG | + | tig0018384:4379-4398 | Msa1365680:CDS | 40.0% |
| ! | AAGAGGAACTCAGAGACTTT+TGG | + | tig0018384:4396-4415 | Msa1365680:CDS | 40.0% |
| ! | TAAGTTGAAGAACACAGCTG+AGG | + | tig0018384:4478-4497 | Msa1365680:CDS | 40.0% |
| !! | CAATATCTTGGGCTGGTATT+TGG | - | tig0018384:4534-4553 | Msa1365680:intergenic | 40.0% |
| CAAATACCAGCCCAAGATAT+TGG | + | tig0018384:4532-4551 | Msa1365680:CDS | 40.0% | |
| ATATAGGTTAAAGGTGGGTG+TGG | + | tig0018384:4743-4762 | Msa1365680:intron | 40.0% | |
| GATCTCTTTCCTACATTTGG+GGG | - | tig0018384:4794-4813 | Msa1365680:intergenic | 40.0% | |
| GGATCTCTTTCCTACATTTG+GGG | - | tig0018384:4795-4814 | Msa1365680:intergenic | 40.0% | |
| AGGAAAGAGATCCATGATAC+GGG | + | tig0018384:4802-4821 | Msa1365680:CDS | 40.0% | |
| TTCCTTTGCTTCTTAATGGC+AGG | + | tig0018384:4961-4980 | Msa1365680:intron | 40.0% | |
| CACTATACGGTAATAGCTAG+AGG | + | tig0018384:5179-5198 | Msa1365680:intron | 40.0% | |
| TAGCTAGAGGATTTGCAAGA+AGG | + | tig0018384:5192-5211 | Msa1365680:intron | 40.0% | |
| CCACATTACATATGGTCTAG+TGG | - | tig0018384:5256-5275 | Msa1365680:intergenic | 40.0% | |
| CCACTAGACCATATGTAATG+TGG | + | tig0018384:5253-5272 | Msa1365680:intron | 40.0% | |
| ACTTGAGTAACCAATTGTGC+CGG | - | tig0018384:5363-5382 | Msa1365680:intergenic | 40.0% | |
| TCTCTCCTTTGACATGGATA+GGG | + | tig0018384:5546-5565 | Msa1365680:intron | 40.0% | |
| TTTCTCCCTATCCATGTCAA+AGG | - | tig0018384:5554-5573 | Msa1365680:intergenic | 40.0% | |
| TTGACATGGATAGGGAGAAA+TGG | + | tig0018384:5554-5573 | Msa1365680:intron | 40.0% | |
| GAAATCACTCCATCATGTTG+AGG | + | tig0018384:5602-5621 | Msa1365680:CDS | 40.0% | |
| GGTAAATCTCTCAGAAGCAA+AGG | + | tig0018384:5623-5642 | Msa1365680:CDS | 40.0% | |
| GGAGAAGCTATCGTTAGAAT+CGG | + | tig0018384:5865-5884 | Msa1365680:CDS | 40.0% | |
| ! | GGTGTTGTATATAAAGTGGC+TGG | + | tig0018384:5886-5905 | Msa1365680:CDS | 40.0% |
| GTGGTGCAATATGATTGGAT+TGG | - | tig0018384:5974-5993 | Msa1365680:intergenic | 40.0% | |
| AACTCACTTGTTTCGGTAAG+TGG | - | tig0018384:6645-6664 | Msa1365680:intergenic | 40.0% | |
| ! | TTTAAGGTTCGGTAGAGCTT+TGG | - | tig0018384:6754-6773 | Msa1365680:intergenic | 40.0% |
| !! | GGTATTGGTCCCTGTAAAAT+AGG | + | tig0018384:6918-6937 | Msa1365680:intron | 40.0% |
| !! | CCAAAACTGGCCTATTTTAC+AGG | - | tig0018384:6931-6950 | Msa1365680:intergenic | 40.0% |
| ! | CCTGTAAAATAGGCCAGTTT+TGG | + | tig0018384:6928-6947 | Msa1365680:intron | 40.0% |
| GCAAGGACTAAAACCAAAAC+TGG | - | tig0018384:7005-7024 | Msa1365680:intergenic | 40.0% | |
| ATCATCACATAATTGGGGTC+AGG | + | tig0018384:7249-7268 | Msa1365680:intron | 40.0% | |
| TCATCACATAATTGGGGTCA+GGG | + | tig0018384:7250-7269 | Msa1365680:intron | 40.0% | |
| ! | CTGCAAAAATAGGCCAGTTT+TGG | - | tig0018384:7344-7363 | Msa1365680:intergenic | 40.0% |
| !!! | CAAAACTGGCCTATTTTTGC+AGG | + | tig0018384:7342-7361 | Msa1365680:intron | 40.0% |
| CTGTTTGTTTCACACCAAAC+AGG | + | tig0018384:7527-7546 | Msa1365680:intron | 40.0% | |
| !! | AGTTGATAGGGACAATGTGT+TGG | - | tig0018384:7947-7966 | Msa1365680:intergenic | 40.0% |
| TGGTTTACATACGCAGTCTT+TGG | + | tig0018384:8494-8513 | Msa1365680:intron | 40.0% | |
| TAGTGAGTGATCAACTAGAC+TGG | - | tig0018384:8532-8551 | Msa1365680:intergenic | 40.0% | |
| ATACTTGTGCCGTCTCTAGT+CGG | - | tig0018384:3286-3305 | Msa1365680:intergenic | 45.0% | |
| AGTAGGGACTATCAGAAGAG+AGG | - | tig0018384:3566-3585 | Msa1365680:intergenic | 45.0% | |
| TGTAGTAAGGACTACTGTGG+GGG | - | tig0018384:3695-3714 | Msa1365680:intergenic | 45.0% | |
| CTCTTGTCATTGATGCCTCT+TGG | + | tig0018384:3733-3752 | Msa1365680:CDS | 45.0% | |
| GAAAGGGATGAGTTGTGATG+GGG | - | tig0018384:3777-3796 | Msa1365680:intergenic | 45.0% | |
| ! | ACCAGAAGCAACTTTAGAGG+AGG | + | tig0018384:3974-3993 | Msa1365680:CDS | 45.0% |
| TTGATCCATCCCGATATCCA+AGG | + | tig0018384:4005-4024 | Msa1365680:CDS | 45.0% | |
| TGATCCATCCCGATATCCAA+GGG | + | tig0018384:4006-4025 | Msa1365680:CDS | 45.0% | |
| AAAGGCTTCCCTTGGATATC+GGG | - | tig0018384:4017-4036 | Msa1365680:intergenic | 45.0% | |
| CAAAGGCTTCCCTTGGATAT+CGG | - | tig0018384:4018-4037 | Msa1365680:intergenic | 45.0% | |
| ATATCCAAGGGAAGCCTTTG+AGG | + | tig0018384:4018-4037 | Msa1365680:CDS | 45.0% | |
| TATCCAAGGGAAGCCTTTGA+GGG | + | tig0018384:4019-4038 | Msa1365680:CDS | 45.0% | |
| !! | GACGGATTGTTAACCCTCAA+AGG | - | tig0018384:4035-4054 | Msa1365680:intergenic | 45.0% |
| GTCGTCATCACAAGCAACTT+TGG | + | tig0018384:4052-4071 | Msa1365680:CDS | 45.0% | |
| GTCATCACAAGCAACTTTGG+AGG | + | tig0018384:4055-4074 | Msa1365680:CDS | 45.0% | |
| ! | ACAAGCAACTTTGGAGGAGA+TGG | + | tig0018384:4061-4080 | Msa1365680:CDS | 45.0% |
| GTGTGACGATGTTGTGTTGT+TGG | + | tig0018384:4163-4182 | Msa1365680:CDS | 45.0% | |
| AGATTTGGGTATGGAGGAGA+TGG | + | tig0018384:4274-4293 | Msa1365680:CDS | 45.0% | |
| AGAGTCGTGCATCACAAGTT+GGG | + | tig0018384:4333-4352 | Msa1365680:CDS | 45.0% | |
| ! | GGAACTCAGAGACTTTTGGT+TGG | + | tig0018384:4400-4419 | Msa1365680:CDS | 45.0% |
| !! | CTCAGAGACTTTTGGTTGGA+TGG | + | tig0018384:4404-4423 | Msa1365680:CDS | 45.0% |
| TTGAAGAACACAGCTGAGGA+AGG | + | tig0018384:4482-4501 | Msa1365680:CDS | 45.0% | |
| AGTCTTCCAATATCTTGGGC+TGG | - | tig0018384:4541-4560 | Msa1365680:intergenic | 45.0% | |
| ! | AGCACTTCAGCTGAAAGCAT+TGG | + | tig0018384:4580-4599 | Msa1365680:CDS | 45.0% |
| TTTGAAGGACCCCCAAATGT+AGG | + | tig0018384:4782-4801 | Msa1365680:CDS | 45.0% | |
| GACCTGCCATTAAGAAGCAA+AGG | - | tig0018384:4966-4985 | Msa1365680:intergenic | 45.0% | |
| TGCTTCTTAATGGCAGGTCA+CGG | + | tig0018384:4967-4986 | Msa1365680:intron | 45.0% | |
| ! | ATTAGCCTAACCGGCACAAT+TGG | + | tig0018384:5350-5369 | Msa1365680:intron | 45.0% |
| !! | AGTAACCAATTGTGCCGGTT+AGG | - | tig0018384:5358-5377 | Msa1365680:intergenic | 45.0% |
| ! | ACAAACTCTAGGGAAACACG+AGG | - | tig0018384:5421-5440 | Msa1365680:intergenic | 45.0% |
| CTCTCTCCTTTGACATGGAT+AGG | + | tig0018384:5545-5564 | Msa1365680:intron | 45.0% | |
| ! | TGACAGTTTTCTGGGCTACA+AGG | - | tig0018384:5717-5736 | Msa1365680:intergenic | 45.0% |
| TGTAGCCCAGAAAACTGTCA+AGG | + | tig0018384:5717-5736 | Msa1365680:CDS | 45.0% | |
| ! | GCGTACCTTGACAGTTTTCT+GGG | - | tig0018384:5725-5744 | Msa1365680:intergenic | 45.0% |
| ! | TGCGTACCTTGACAGTTTTC+TGG | - | tig0018384:5726-5745 | Msa1365680:intergenic | 45.0% |
| GGACAGTGGTGCAATATGAT+TGG | - | tig0018384:5979-5998 | Msa1365680:intergenic | 45.0% | |
| GAAATGCTGAGTGACCTGTT+GGG | - | tig0018384:6020-6039 | Msa1365680:intergenic | 45.0% | |
| ! | GGCTTGACGGAGATTGTTTT+TGG | - | tig0018384:6606-6625 | Msa1365680:intergenic | 45.0% |
| CCAATGAACGAATGGCTTGA+CGG | - | tig0018384:6619-6638 | Msa1365680:intergenic | 45.0% | |
| TCAAGCCATTCGTTCATTGG+AGG | + | tig0018384:6619-6638 | Msa1365680:intron | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | - | tig0018384:7328-7347 | Msa1365680:intergenic | 45.0% | |
| TCATCACATAACTGGGGTCA+GGG | - | tig0018384:7081-7100 | Msa1365680:intergenic | 45.0% | |
| ATCATCACATAACTGGGGTC+AGG | - | tig0018384:7082-7101 | Msa1365680:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | tig0018384:7328-7347 | Msa1365680:intron | 45.0% | |
| TGTTTCACACCAAACAGGAG+AGG | + | tig0018384:7532-7551 | Msa1365680:intron | 45.0% | |
| GTTTCACACCAAACAGGAGA+GGG | + | tig0018384:7533-7552 | Msa1365680:intron | 45.0% | |
| !! | CTAGTTTTCCCTCTCCTGTT+TGG | - | tig0018384:7544-7563 | Msa1365680:intergenic | 45.0% |
| AGATGAATGTGACCCTTGCA+AGG | - | tig0018384:7598-7617 | Msa1365680:intergenic | 45.0% | |
| TGATCACTCACTATGCTCAG+AGG | + | tig0018384:8539-8558 | Msa1365680:CDS | 45.0% | |
| TGCTCAGAGGTTACCAAACT+TGG | + | tig0018384:8552-8571 | Msa1365680:CDS | 45.0% | |
| AGAGGTTACCAAACTTGGCA+AGG | + | tig0018384:8557-8576 | Msa1365680:CDS | 45.0% | |
| AGTGTACTCCTTGCCAAGTT+TGG | - | tig0018384:8568-8587 | Msa1365680:intergenic | 45.0% | |
| TTCATTGAATCCCCGTGAGT+TGG | + | tig0018384:8987-9006 | Msa1365680:intron | 45.0% | |
| TCATTGAATCCCCGTGAGTT+GGG | + | tig0018384:8988-9007 | Msa1365680:intron | 45.0% | |
| GCTGGAATGGAGCATATAAG+TGG | + | tig0018384:9230-9249 | Msa1365680:three_prime_UTR | 45.0% | |
| !!! | AAATTTTTTTTTATAGTTTT+TGG | - | tig0018384:7307-7326 | Msa1365680:intergenic | 5.0% |
| !!! | AATTTTTTTTTTATAGTTTT+TGG | - | tig0018384:7431-7450 | Msa1365680:intergenic | 5.0% |
| TTGGAAGCTCCGACTAGAGA+CGG | + | tig0018384:3274-3293 | Msa1365680:five_prime_UTR | 50.0% | |
| !! | TGAAAGTACCTAGCCCGACT+CGG | + | tig0018384:3385-3404 | Msa1365680:CDS | 50.0% |
| CAACAGATTGCTTCCGAGTC+GGG | - | tig0018384:3401-3420 | Msa1365680:intergenic | 50.0% | |
| CCAACAGATTGCTTCCGAGT+CGG | - | tig0018384:3402-3421 | Msa1365680:intergenic | 50.0% | |
| CGAGACATATTGTGGCGAGT+AGG | - | tig0018384:3444-3463 | Msa1365680:intergenic | 50.0% | |
| ACAATATGTCTCGTTCCGCG+CGG | + | tig0018384:3451-3470 | Msa1365680:CDS | 50.0% | |
| TCGGTGAGACCCTTGTAGTA+GGG | - | tig0018384:3582-3601 | Msa1365680:intergenic | 50.0% | |
| ATCGGTGAGACCCTTGTAGT+AGG | - | tig0018384:3583-3602 | Msa1365680:intergenic | 50.0% | |
| GGGGATGATGAAAGGAGGAT+AGG | - | tig0018384:3675-3694 | Msa1365680:intergenic | 50.0% | |
| TACTGTGGGGGGATGATGAA+AGG | - | tig0018384:3683-3702 | Msa1365680:intergenic | 50.0% | |
| GTAGTAAGGACTACTGTGGG+GGG | - | tig0018384:3694-3713 | Msa1365680:intergenic | 50.0% | |
| ! | GATGAGTTGTGATGGGGATG+GGG | - | tig0018384:3771-3790 | Msa1365680:intergenic | 50.0% |
| ! | GGATGAGTTGTGATGGGGAT+GGG | - | tig0018384:3772-3791 | Msa1365680:intergenic | 50.0% |
| TTGAGGGAGAAGAGAGAGGA+GGG | - | tig0018384:3861-3880 | Msa1365680:intergenic | 50.0% | |
| GATGTTGAGGGAGAAGAGAG+AGG | - | tig0018384:3865-3884 | Msa1365680:intergenic | 50.0% | |
| !! | ATCATGAGTTGGTGGTTGGG+TGG | - | tig0018384:3907-3926 | Msa1365680:intergenic | 50.0% |
| !! | GCCTCCTCTAAAGTTGCTTC+TGG | - | tig0018384:3978-3997 | Msa1365680:intergenic | 50.0% |
| ! | AGCAACTTTAGAGGAGGCGA+TGG | + | tig0018384:3980-3999 | Msa1365680:CDS | 50.0% |
| TAACCCTCAAAGGCTTCCCT+TGG | - | tig0018384:4025-4044 | Msa1365680:intergenic | 50.0% | |
| ! | ACTTTGGAGGAGATGGACGA+CGG | + | tig0018384:4068-4087 | Msa1365680:CDS | 50.0% |
| ! | GACGACGGTGATGATGTTGA+AGG | + | tig0018384:4083-4102 | Msa1365680:CDS | 50.0% |
| ! | GACGGTGATGATGTTGAAGG+CGG | + | tig0018384:4086-4105 | Msa1365680:CDS | 50.0% |
| ! | ACGGTGATGATGTTGAAGGC+GGG | + | tig0018384:4087-4106 | Msa1365680:CDS | 50.0% |
| GGGTATGGAGGAGATGGAAT+TGG | + | tig0018384:4280-4299 | Msa1365680:CDS | 50.0% | |
| GATGCACGACTCTCTCTCAA+TGG | - | tig0018384:4326-4345 | Msa1365680:intergenic | 50.0% | |
| GAGAGTCGTGCATCACAAGT+TGG | + | tig0018384:4332-4351 | Msa1365680:CDS | 50.0% | |
| CACAACTGCATGCCCAACAT+AGG | + | tig0018384:4691-4710 | Msa1365680:intron | 50.0% | |
| ! | CCATGATACGGGCTATGCTT+CGG | + | tig0018384:4813-4832 | Msa1365680:CDS | 50.0% |
| ! | CATGATACGGGCTATGCTTC+GGG | + | tig0018384:4814-4833 | Msa1365680:CDS | 50.0% |
| !! | GCTATGCTTCGGGAGGTATT+TGG | + | tig0018384:4824-4843 | Msa1365680:CDS | 50.0% |
| ATATGGTCTAGTGGGAGCAG+GGG | - | tig0018384:5247-5266 | Msa1365680:intergenic | 50.0% | |
| CATATGGTCTAGTGGGAGCA+GGG | - | tig0018384:5248-5267 | Msa1365680:intergenic | 50.0% | |
| ACATATGGTCTAGTGGGAGC+AGG | - | tig0018384:5249-5268 | Msa1365680:intergenic | 50.0% | |
| CCATGTCAAAGGAGAGAGAC+AGG | - | tig0018384:5543-5562 | Msa1365680:intergenic | 50.0% | |
| CCTGTCTCTCTCCTTTGACA+TGG | + | tig0018384:5540-5559 | Msa1365680:intron | 50.0% | |
| !! | GTTGGGTTGATGGTGATGAG+AGG | - | tig0018384:6003-6022 | Msa1365680:intergenic | 50.0% |
| CTCATCACCATCAACCCAAC+AGG | + | tig0018384:6003-6022 | Msa1365680:CDS | 50.0% | |
| !! | TGAGTGACCTGTTGGGTTGA+TGG | - | tig0018384:6013-6032 | Msa1365680:intergenic | 50.0% |
| GGAAATGCTGAGTGACCTGT+TGG | - | tig0018384:6021-6040 | Msa1365680:intergenic | 50.0% | |
| CCGTCAAGCCATTCGTTCAT+TGG | + | tig0018384:6616-6635 | Msa1365680:intron | 50.0% | |
| AGTGGCCTCCAATGAACGAA+TGG | - | tig0018384:6627-6646 | Msa1365680:intergenic | 50.0% | |
| CATCACATAACTGGGGTCAG+GGG | - | tig0018384:7080-7099 | Msa1365680:intergenic | 50.0% | |
| AGTACAGTACGTGCCTTGCA+AGG | + | tig0018384:7582-7601 | Msa1365680:intron | 50.0% | |
| GTACAGTACGTGCCTTGCAA+GGG | + | tig0018384:7583-7602 | Msa1365680:intron | 50.0% | |
| GTTGGAATAAGCTGGTCGTG+AGG | + | tig0018384:7889-7908 | Msa1365680:intron | 50.0% | |
| ! | AATCCCCGTGAGTTGGGTTT+CGG | + | tig0018384:8994-9013 | Msa1365680:intron | 50.0% |
| AGATCCGAAACCCAACTCAC+GGG | - | tig0018384:9001-9020 | Msa1365680:intergenic | 50.0% | |
| GAGATCCGAAACCCAACTCA+CGG | - | tig0018384:9002-9021 | Msa1365680:intergenic | 50.0% | |
| GGATGTCACCATCGCAGCAT+TGG | + | tig0018384:3245-3264 | Msa1365680:five_prime_UTR | 55.0% | |
| !! | CCGACTCGGAAGCAATCTGT+TGG | + | tig0018384:3399-3418 | Msa1365680:CDS | 55.0% |
| GCGCGGAACGAGACATATTG+TGG | - | tig0018384:3452-3471 | Msa1365680:intergenic | 55.0% | |
| GGAGGAAGAACAGTGGTCAC+TGG | + | tig0018384:3475-3494 | Msa1365680:CDS | 55.0% | |
| GGAAGAACAGTGGTCACTGG+TGG | + | tig0018384:3478-3497 | Msa1365680:CDS | 55.0% | |
| TGTGGGGGGATGATGAAAGG+AGG | - | tig0018384:3680-3699 | Msa1365680:intergenic | 55.0% | |
| ! | TTGTGATGGGGATGGGGATG+AGG | - | tig0018384:3765-3784 | Msa1365680:intergenic | 55.0% |
| ! | GGGATGAGTTGTGATGGGGA+TGG | - | tig0018384:3773-3792 | Msa1365680:intergenic | 55.0% |
| AAGAGAGAGGAGGGGGAAGT+AGG | - | tig0018384:3852-3871 | Msa1365680:intergenic | 55.0% | |
| TGAGGGAGAAGAGAGAGGAG+GGG | - | tig0018384:3860-3879 | Msa1365680:intergenic | 55.0% | |
| GTTGAGGGAGAAGAGAGAGG+AGG | - | tig0018384:3862-3881 | Msa1365680:intergenic | 55.0% | |
| !! | TGAGTTGGTGGTTGGGTGGT+GGG | - | tig0018384:3903-3922 | Msa1365680:intergenic | 55.0% |
| !! | ATGAGTTGGTGGTTGGGTGG+TGG | - | tig0018384:3904-3923 | Msa1365680:intergenic | 55.0% |
| GCTTCCCTTGGATATCGGGA+TGG | - | tig0018384:4013-4032 | Msa1365680:intergenic | 55.0% | |
| TTGAAGGCGGGAAGCCTTTG+AGG | + | tig0018384:4099-4118 | Msa1365680:CDS | 55.0% | |
| TGAAGGCGGGAAGCCTTTGA+GGG | + | tig0018384:4100-4119 | Msa1365680:CDS | 55.0% | |
| CCGAAGCATAGCCCGTATCA+TGG | - | tig0018384:4816-4835 | Msa1365680:intergenic | 55.0% | |
| !! | CGGGAGGTATTTGGTGCTGA+CGG | + | tig0018384:4833-4852 | Msa1365680:CDS | 55.0% |
| !! | ATTTGGTGCTGACGGAGTGC+AGG | + | tig0018384:4841-4860 | Msa1365680:CDS | 55.0% |
| !! | GGGTTGATGGTGATGAGAGG+CGG | - | tig0018384:6000-6019 | Msa1365680:intergenic | 55.0% |
| GATCCGAAACCCAACTCACG+GGG | - | tig0018384:9000-9019 | Msa1365680:intergenic | 55.0% | |
| GATTGCTTCCGAGTCGGGCT+AGG | - | tig0018384:3396-3415 | Msa1365680:intergenic | 60.0% | |
| ATATGTCTCGTTCCGCGCGG+AGG | + | tig0018384:3454-3473 | Msa1365680:CDS | 60.0% | |
| ACTGTTCTTCCTCCTCCGCG+CGG | - | tig0018384:3469-3488 | Msa1365680:intergenic | 60.0% | |
| ATGGGGATGGGGATGAGGAG+TGG | - | tig0018384:3760-3779 | Msa1365680:intergenic | 60.0% | |
| GAGGAGGGGGAAGTAGGAAC+AGG | - | tig0018384:3846-3865 | Msa1365680:intergenic | 60.0% | |
| GAGGGAGAAGAGAGAGGAGG+GGG | - | tig0018384:3859-3878 | Msa1365680:intergenic | 60.0% | |
| !! | AGTTGGTGGTTGGGTGGTGG+GGG | - | tig0018384:3901-3920 | Msa1365680:intergenic | 60.0% |
| !! | GAGTTGGTGGTTGGGTGGTG+GGG | - | tig0018384:3902-3921 | Msa1365680:intergenic | 60.0% |
| ! | GATACGGGCTATGCTTCGGG+AGG | + | tig0018384:4817-4836 | Msa1365680:CDS | 60.0% |
| ! | TGGTGATGAGAGGCGGACAG+TGG | - | tig0018384:5993-6012 | Msa1365680:intergenic | 60.0% |
| GCGCGGAGGAGGAAGAACAG+TGG | + | tig0018384:3468-3487 | Msa1365680:CDS | 65.0% | |
| GGGATGAGGAGTGGCCCAAG+AGG | - | tig0018384:3751-3770 | Msa1365680:intergenic | 65.0% | |
| TGTCTCGTTCCGCGCGGAGG+AGG | + | tig0018384:3457-3476 | Msa1365680:CDS | 70.0% | |
| !! | TGGTGGTTGGGTGGTGGGGG+TGG | - | tig0018384:3898-3917 | Msa1365680:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018384 | gene | 3243 | 9362 | 3243 | ID=Msa1365680;Name=Msa1365680 |
| tig0018384 | mRNA | 3243 | 9362 | 3243 | ID=Msa1365680-mRNA-1;Parent=Msa1365680;Name=Msa1365680-mRNA-1;_AED=0.09;_eAED=0.09;_QI=141|0.88|0.9|1|0.66|0.7|10|139|708 |
| tig0018384 | exon | 3243 | 4601 | 3243 | ID=Msa1365680-mRNA-1:exon:14736;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 4749 | 4862 | 4749 | ID=Msa1365680-mRNA-1:exon:14737;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 4983 | 5015 | 4983 | ID=Msa1365680-mRNA-1:exon:14738;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 5567 | 5738 | 5567 | ID=Msa1365680-mRNA-1:exon:14739;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 5846 | 6024 | 5846 | ID=Msa1365680-mRNA-1:exon:14740;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 6521 | 6600 | 6521 | ID=Msa1365680-mRNA-1:exon:14741;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 8330 | 8399 | 8330 | ID=Msa1365680-mRNA-1:exon:14742;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 8510 | 8587 | 8510 | ID=Msa1365680-mRNA-1:exon:14743;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 8675 | 8795 | 8675 | ID=Msa1365680-mRNA-1:exon:14744;Parent=Msa1365680-mRNA-1 |
| tig0018384 | exon | 9162 | 9362 | 9162 | ID=Msa1365680-mRNA-1:exon:14745;Parent=Msa1365680-mRNA-1 |
| tig0018384 | five_prime_UTR | 3243 | 3383 | 3243 | ID=Msa1365680-mRNA-1:five_prime_utr;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 3384 | 4601 | 3384 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 4749 | 4862 | 4749 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 4983 | 5015 | 4983 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 5567 | 5738 | 5567 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 5846 | 6024 | 5846 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 6521 | 6600 | 6521 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 8330 | 8399 | 8330 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 8510 | 8587 | 8510 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 8675 | 8795 | 8675 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | CDS | 9162 | 9223 | 9162 | ID=Msa1365680-mRNA-1:cds;Parent=Msa1365680-mRNA-1 |
| tig0018384 | three_prime_UTR | 9224 | 9362 | 9224 | ID=Msa1365680-mRNA-1:three_prime_utr;Parent=Msa1365680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
