Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001570 | sp|Q8RWD6|FB271_ARATH | 42.045 | 352 | 153 | 10 | 9 | 337 | 14 | 337 | 5.69e-77 | 260 |
| Msa0001570 | sp|Q8RWD6|FB271_ARATH | 53.070 | 228 | 101 | 2 | 444 | 669 | 350 | 573 | 7.44e-76 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001570 | Msa0572850 | 0.819214 | 1.305976e-52 | -8.615850e-47 |
| Msa0001570 | Msa1393610 | 0.800103 | 1.686250e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001570 | MtrunA17_Chr8g0384611 | 80.488 | 697 | 104 | 5 | 1 | 670 | 1 | 692 | 0.0 | 1137 |
| Msa0001570 | MtrunA17_Chr8g0384561 | 81.469 | 286 | 19 | 2 | 110 | 395 | 1 | 252 | 5.40e-164 | 470 |
| Msa0001570 | MtrunA17_Chr3g0130541 | 52.941 | 374 | 122 | 8 | 10 | 343 | 3 | 362 | 1.02e-117 | 365 |
| Msa0001570 | MtrunA17_Chr3g0130541 | 62.105 | 285 | 84 | 4 | 394 | 669 | 331 | 600 | 2.55e-114 | 356 |
| Msa0001570 | MtrunA17_Chr8g0384581 | 91.818 | 110 | 9 | 0 | 561 | 670 | 1 | 110 | 8.84e-65 | 209 |
| Msa0001570 | MtrunA17_Chr8g0384571 | 82.000 | 100 | 18 | 0 | 405 | 504 | 4 | 103 | 4.59e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001570 | AT5G39450.1 | 42.045 | 352 | 153 | 10 | 9 | 337 | 14 | 337 | 5.79e-78 | 260 |
| Msa0001570 | AT5G39450.1 | 53.070 | 228 | 101 | 2 | 444 | 669 | 350 | 573 | 7.56e-77 | 257 |
| Msa0001570 | AT5G39490.1 | 45.860 | 314 | 133 | 8 | 9 | 304 | 6 | 300 | 5.29e-75 | 251 |
| Msa0001570 | AT5G39490.1 | 46.552 | 232 | 118 | 2 | 441 | 670 | 330 | 557 | 6.55e-65 | 224 |
| Msa0001570 | AT5G39460.1 | 43.266 | 349 | 151 | 10 | 9 | 337 | 7 | 328 | 1.06e-73 | 248 |
| Msa0001570 | AT5G39460.1 | 50.000 | 230 | 102 | 5 | 444 | 669 | 341 | 561 | 2.36e-65 | 226 |
| Msa0001570 | AT5G39480.1 | 49.438 | 267 | 110 | 6 | 9 | 262 | 7 | 261 | 2.11e-73 | 247 |
| Msa0001570 | AT5G39480.1 | 47.638 | 254 | 117 | 4 | 428 | 669 | 309 | 558 | 4.78e-68 | 233 |
| Msa0001570 | AT5G39470.1 | 37.363 | 91 | 32 | 1 | 14 | 104 | 96 | 161 | 2.12e-13 | 69.3 |
Find 123 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAGGAGGTTGTTTCTTT+AGG | 0.164715 | 1_1:+3234970 | Msa0001570:CDS |
| TTAAACCATTGCTTGGTATT+TGG | 0.167263 | 1_1:+3234869 | Msa0001570:CDS |
| CATTTGCATAATTAGGATTT+AGG | 0.187285 | 1_1:-3235275 | None:intergenic |
| ATCAAGTGTATGCTGGTTTA+TGG | 0.206878 | 1_1:+3236096 | Msa0001570:CDS |
| CTCAGGAGGTTGTTTCTTTA+GGG | 0.209032 | 1_1:+3234971 | Msa0001570:CDS |
| AATGGTTCATTTGCATAATT+AGG | 0.214034 | 1_1:-3235282 | None:intergenic |
| TGAAAACTTCTCTGGGAATT+AGG | 0.230889 | 1_1:-3234687 | None:intergenic |
| GGTTTATGGGGCGGTACTTT+TGG | 0.253329 | 1_1:+3236110 | Msa0001570:CDS |
| TAAACCATTGCTTGGTATTT+GGG | 0.255038 | 1_1:+3234870 | Msa0001570:CDS |
| CAGCTATTGTGTTGCGTTGC+TGG | 0.268648 | 1_1:-3235728 | None:intergenic |
| CTAAAACCCAACTTGCTAAA+AGG | 0.268952 | 1_1:-3235195 | None:intergenic |
| GTACTAACCAAGTTAGATTA+AGG | 0.276509 | 1_1:+3235250 | Msa0001570:CDS |
| CATTTCCTTGGAACACTGAT+AGG | 0.279609 | 1_1:+3236321 | Msa0001570:CDS |
| TCCCTCTTTGTGTTTCAAAA+TGG | 0.295164 | 1_1:+3236434 | Msa0001570:CDS |
| GCATACACTTGATCTTCTTT+AGG | 0.298816 | 1_1:-3236086 | None:intergenic |
| TTGCATCTTCTGAGAAAGTT+TGG | 0.305192 | 1_1:+3234743 | Msa0001570:CDS |
| TTCTCAAAACAAGCCTAAAA+AGG | 0.314794 | 1_1:+3236151 | Msa0001570:CDS |
| TCCAAGATTGTTCTATCCTT+TGG | 0.318701 | 1_1:+3234995 | Msa0001570:CDS |
| CTTGCAAGTTAAGTCTTTGC+AGG | 0.324795 | 1_1:-3236499 | None:intergenic |
| ACTAAGATTGAAAACTTCTC+TGG | 0.349744 | 1_1:-3234695 | None:intergenic |
| CGAAGATCTAGTACAATTGA+TGG | 0.375639 | 1_1:+3235687 | Msa0001570:CDS |
| TAAACAAGATTACCAAGTTC+AGG | 0.378819 | 1_1:-3234904 | None:intergenic |
| TCAAGTGTATGCTGGTTTAT+GGG | 0.380553 | 1_1:+3236097 | Msa0001570:CDS |
| TGTCAATATTGGTAAGAAAC+GGG | 0.408489 | 1_1:+3235794 | Msa0001570:CDS |
| AACCATTCTTTCCTAGATCA+AGG | 0.416781 | 1_1:+3235298 | Msa0001570:CDS |
| GGACTTGAATCAAAAGGATA+AGG | 0.421533 | 1_1:-3234619 | None:intergenic |
| ACCAAAGGATAGAACAATCT+TGG | 0.422539 | 1_1:-3234996 | None:intergenic |
| AAATATCCAGGATCAAAATC+TGG | 0.428229 | 1_1:+3236410 | Msa0001570:CDS |
| ATAAACATTGGCGAACCATT+AGG | 0.435208 | 1_1:-3236269 | None:intergenic |
| CTATCAGTGTTCCAAGGAAA+TGG | 0.436146 | 1_1:-3236320 | None:intergenic |
| ACATAGTCATCCCTTGATCT+AGG | 0.436786 | 1_1:-3235309 | None:intergenic |
| CGCTACGCCTTGCATCCTAA+TGG | 0.437385 | 1_1:+3236254 | Msa0001570:CDS |
| CTTACTATTGCTCTCTTACT+CGG | 0.439508 | 1_1:+3236181 | Msa0001570:CDS |
| ATGTGTTTGCCACAGTTTCA+AGG | 0.439794 | 1_1:+3234662 | Msa0001570:CDS |
| GATGGCAGTGTTGTCAATAT+TGG | 0.444794 | 1_1:+3235783 | Msa0001570:CDS |
| ATGGTGTTATTGCCTTTGTT+TGG | 0.445858 | 1_1:+3236453 | Msa0001570:CDS |
| GAAGGTATTGCAGGTGGCTA+TGG | 0.446172 | 1_1:+3236383 | Msa0001570:CDS |
| TCTCATTGGAACAAAAGTAT+TGG | 0.449339 | 1_1:+3236223 | Msa0001570:CDS |
| CTTCATCTGAACCATTTCCT+TGG | 0.454452 | 1_1:+3236309 | Msa0001570:CDS |
| TTTGTGGGAGAAGGTATTGC+AGG | 0.455387 | 1_1:+3236374 | Msa0001570:CDS |
| TTGTCAATATTGGTAAGAAA+CGG | 0.455965 | 1_1:+3235793 | Msa0001570:CDS |
| CAACACAGCCGCTGGAGCAA+GGG | 0.457792 | 1_1:+3235659 | Msa0001570:CDS |
| GTCCCTAGTTCCTGCGGTTG+TGG | 0.462275 | 1_1:-3235883 | None:intergenic |
| GGGGTAGATTGTGTTTATCA+TGG | 0.463874 | 1_1:+3235090 | Msa0001570:CDS |
| AATCTTGTTTATGTAATGCC+AGG | 0.464568 | 1_1:+3234916 | Msa0001570:CDS |
| TGTTGCTTGAGGTTGAATCT+AGG | 0.464870 | 1_1:+3235148 | Msa0001570:CDS |
| TTAGGAACCTTAATCTAACT+TGG | 0.467552 | 1_1:-3235257 | None:intergenic |
| GCTTGTAAACACATTTAAGT+AGG | 0.471199 | 1_1:-3236591 | None:intergenic |
| CAAGGAAATGGTTCAGATGA+AGG | 0.471399 | 1_1:-3236308 | None:intergenic |
| GTGTGACTATCCTTATTGAT+TGG | 0.471986 | 1_1:-3235525 | None:intergenic |
| ACACCACAACCGCAGGAACT+AGG | 0.477831 | 1_1:+3235880 | Msa0001570:CDS |
| CAGCAACGCAACACAATAGC+TGG | 0.480588 | 1_1:+3235729 | Msa0001570:CDS |
| GGCTATGGATTCAAATATCC+AGG | 0.481720 | 1_1:+3236398 | Msa0001570:CDS |
| ACTGTGGCAAACACATCATC+TGG | 0.489039 | 1_1:-3234655 | None:intergenic |
| GATTTGCATTCTTTATCTCA+TGG | 0.489665 | 1_1:-3235929 | None:intergenic |
| AGGGGAAGAAGTTGGCTCAA+TGG | 0.493139 | 1_1:+3235443 | Msa0001570:CDS |
| AAGGGACAACAACTTCTCAT+TGG | 0.494162 | 1_1:+3236209 | Msa0001570:CDS |
| TTGAGTGTTAAACCATTGCT+TGG | 0.500161 | 1_1:+3234862 | Msa0001570:CDS |
| TCCCTTGATCTAGGAAAGAA+TGG | 0.503136 | 1_1:-3235300 | None:intergenic |
| GCTCTCTTACTCGGAGTCAA+AGG | 0.508292 | 1_1:+3236190 | Msa0001570:CDS |
| TTGTCAATGGGAGGCAGAGA+AGG | 0.513421 | 1_1:-3236548 | None:intergenic |
| GTGTTCGATATTCATCGATA+AGG | 0.516949 | 1_1:-3236348 | None:intergenic |
| TTGCAATTTATTGTTGCTTG+AGG | 0.520647 | 1_1:+3235137 | Msa0001570:CDS |
| CTAAGATTGAAAACTTCTCT+GGG | 0.523415 | 1_1:-3234694 | None:intergenic |
| CTCTCTTACTCGGAGTCAAA+GGG | 0.526823 | 1_1:+3236191 | Msa0001570:CDS |
| GTTCAACAGAATCCTGAACT+TGG | 0.526928 | 1_1:+3234892 | Msa0001570:CDS |
| GACTTGAATCAAAAGGATAA+GGG | 0.526944 | 1_1:-3234618 | None:intergenic |
| ATTTCCTTGGAACACTGATA+GGG | 0.532867 | 1_1:+3236322 | Msa0001570:CDS |
| GAAATTGTTTGCGATTTCGA+TGG | 0.532974 | 1_1:+3235030 | Msa0001570:CDS |
| GAAAATAAAGAAAATTCTCA+AGG | 0.533455 | 1_1:+3235423 | Msa0001570:CDS |
| ATAAGCGGACTTGAATCAAA+AGG | 0.534650 | 1_1:-3234625 | None:intergenic |
| CTTCATGGAAGGGAAGAAGA+GGG | 0.535516 | 1_1:+3235069 | Msa0001570:CDS |
| ACAACACAGCCGCTGGAGCA+AGG | 0.536255 | 1_1:+3235658 | Msa0001570:CDS |
| ATGGCTTGAACTAATCCCTA+TGG | 0.536846 | 1_1:-3235910 | None:intergenic |
| CACTCAAAGACCTTGTTGAG+TGG | 0.537841 | 1_1:+3234797 | Msa0001570:CDS |
| CATCAACACAACACAGCCGC+TGG | 0.541070 | 1_1:+3235651 | Msa0001570:CDS |
| AATTCTCAAGGGGAAGAAGT+TGG | 0.541165 | 1_1:+3235435 | Msa0001570:CDS |
| AACACAGCCGCTGGAGCAAG+GGG | 0.552236 | 1_1:+3235660 | Msa0001570:CDS |
| TGTTATTGCCTTTGTTTGGA+AGG | 0.552749 | 1_1:+3236457 | Msa0001570:CDS |
| CACCACAACCGCAGGAACTA+GGG | 0.552998 | 1_1:+3235881 | Msa0001570:CDS |
| TTGATATTCACTATAAACAT+TGG | 0.553523 | 1_1:-3236281 | None:intergenic |
| GGAACTAGGGACAATGCCAT+AGG | 0.554489 | 1_1:+3235894 | Msa0001570:CDS |
| AAAGAAGATCAAGTGTATGC+TGG | 0.555008 | 1_1:+3236089 | Msa0001570:CDS |
| TCTTGATTCCTTCCAAACAA+AGG | 0.557133 | 1_1:-3236465 | None:intergenic |
| AATATTGACAACACTGCCAT+CGG | 0.558425 | 1_1:-3235781 | None:intergenic |
| CACACTCTCTCCACTCAACA+AGG | 0.560982 | 1_1:-3234807 | None:intergenic |
| TGACTATCCTTATTGATTGG+AGG | 0.569707 | 1_1:-3235522 | None:intergenic |
| CAAGTGTATGCTGGTTTATG+GGG | 0.571442 | 1_1:+3236098 | Msa0001570:CDS |
| ACCATTCTTTCCTAGATCAA+GGG | 0.573435 | 1_1:+3235299 | Msa0001570:CDS |
| GAATCAAAAGGATAAGGGTA+GGG | 0.578030 | 1_1:-3234613 | None:intergenic |
| AGCGTGTCGAATAATACCTC+AGG | 0.579720 | 1_1:+3234954 | Msa0001570:CDS |
| AAAATAAAGAAAATTCTCAA+GGG | 0.581227 | 1_1:+3235424 | Msa0001570:CDS |
| TGAATCAAAAGGATAAGGGT+AGG | 0.584514 | 1_1:-3234614 | None:intergenic |
| TCTTCATGGAAGGGAAGAAG+AGG | 0.584944 | 1_1:+3235068 | Msa0001570:CDS |
| TTGCAAGTTAAGTCTTTGCA+GGG | 0.588072 | 1_1:-3236498 | None:intergenic |
| GGCATTGTCCCTAGTTCCTG+CGG | 0.588627 | 1_1:-3235889 | None:intergenic |
| TCTTCTTTAGGAACTTGCAA+AGG | 0.590093 | 1_1:-3236074 | None:intergenic |
| TCGATGGCCCCTTGCTCCAG+CGG | 0.591032 | 1_1:-3235667 | None:intergenic |
| CAGCAACACACCACAACCGC+AGG | 0.591593 | 1_1:+3235873 | Msa0001570:CDS |
| ATTGGAACAAAAGTATTGGA+AGG | 0.593692 | 1_1:+3236227 | Msa0001570:CDS |
| TGGCGAACCATTAGGATGCA+AGG | 0.595930 | 1_1:-3236261 | None:intergenic |
| GTGGGAGAAGGTATTGCAGG+TGG | 0.596666 | 1_1:+3236377 | Msa0001570:CDS |
| CAATTGAACTAGATCTTCCA+AGG | 0.604899 | 1_1:-3235605 | None:intergenic |
| CAATTGTACTAGATCTTCGA+TGG | 0.606447 | 1_1:-3235683 | None:intergenic |
| TCATGGAAGGGAAGAAGAGG+GGG | 0.607393 | 1_1:+3235071 | Msa0001570:CDS |
| GAACTAGGGACAATGCCATA+GGG | 0.609628 | 1_1:+3235895 | Msa0001570:CDS |
| GCTACAACAGAAACAAAACC+TGG | 0.618777 | 1_1:-3234934 | None:intergenic |
| TTCATGGAAGGGAAGAAGAG+GGG | 0.619678 | 1_1:+3235070 | Msa0001570:CDS |
| TGAACCCAAATACCAAGCAA+TGG | 0.622950 | 1_1:-3234874 | None:intergenic |
| CCTAAAGAAACAACCTCCTG+AGG | 0.625560 | 1_1:-3234970 | None:intergenic |
| TTTCAAACACAGGTGACCAA+AGG | 0.627505 | 1_1:-3235011 | None:intergenic |
| GTGTATGCTGGTTTATGGGG+CGG | 0.628467 | 1_1:+3236101 | Msa0001570:CDS |
| ATCTAGGAAGCAAGATAGTG+AGG | 0.629097 | 1_1:+3235164 | Msa0001570:CDS |
| CGATTGTACTAGATCTTCGA+TGG | 0.634797 | 1_1:-3235827 | None:intergenic |
| CAAAGATCTAGTACAGCCGA+TGG | 0.640877 | 1_1:+3235765 | Msa0001570:CDS |
| TCGCAAACAATTTCAAACAC+AGG | 0.643858 | 1_1:-3235021 | None:intergenic |
| GTCAATATTGGTAAGAAACG+GGG | 0.644701 | 1_1:+3235795 | Msa0001570:CDS |
| GAGTCCCTATCAGTGTTCCA+AGG | 0.646047 | 1_1:-3236326 | None:intergenic |
| TCATCTGGTAGATGAATAAG+CGG | 0.658669 | 1_1:-3234640 | None:intergenic |
| AAATAAAGAAAATTCTCAAG+GGG | 0.659702 | 1_1:+3235425 | Msa0001570:CDS |
| GTGTCGAATAATACCTCAGG+AGG | 0.669560 | 1_1:+3234957 | Msa0001570:CDS |
| AATTAGGTACCTTGAAACTG+TGG | 0.670120 | 1_1:-3234671 | None:intergenic |
| AATGGATTTAGAGATAGATG+AGG | 0.691570 | 1_1:+3235461 | Msa0001570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAAGAAAATTCTCAA+GGG | + | chr1_1:3235424-3235443 | Msa0001570:CDS | 15.0% |
| !! | AAATATGAAAAATTGTCAAT+GGG | - | chr1_1:3236563-3236582 | None:intergenic | 15.0% |
| !! | AAAATAAAGAAAATTCTCAA+GGG | + | chr1_1:3235424-3235443 | Msa0001570:CDS | 15.0% |
| !! | AAATATGAAAAATTGTCAAT+GGG | - | chr1_1:3236563-3236582 | None:intergenic | 15.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | + | chr1_1:3235054-3235073 | Msa0001570:CDS | 20.0% |
| !!! | TGTTAATTTTCAGAAAGATT+TGG | + | chr1_1:3235329-3235348 | Msa0001570:CDS | 20.0% |
| !! | GAAAATAAAGAAAATTCTCA+AGG | + | chr1_1:3235423-3235442 | Msa0001570:CDS | 20.0% |
| !! | AAATAAAGAAAATTCTCAAG+GGG | + | chr1_1:3235425-3235444 | Msa0001570:CDS | 20.0% |
| !!! | AACCAATTTTTGTTCATATT+CGG | - | chr1_1:3236038-3236057 | None:intergenic | 20.0% |
| !! | TTGATATTCACTATAAACAT+TGG | - | chr1_1:3236284-3236303 | None:intergenic | 20.0% |
| !! | CAAATATGAAAAATTGTCAA+TGG | - | chr1_1:3236564-3236583 | None:intergenic | 20.0% |
| !!! | TCTAATATGTTTTTTCTTCA+TGG | + | chr1_1:3235054-3235073 | Msa0001570:CDS | 20.0% |
| !!! | TGTTAATTTTCAGAAAGATT+TGG | + | chr1_1:3235329-3235348 | Msa0001570:CDS | 20.0% |
| !! | GAAAATAAAGAAAATTCTCA+AGG | + | chr1_1:3235423-3235442 | Msa0001570:CDS | 20.0% |
| !! | AAATAAAGAAAATTCTCAAG+GGG | + | chr1_1:3235425-3235444 | Msa0001570:CDS | 20.0% |
| !!! | AACCAATTTTTGTTCATATT+CGG | - | chr1_1:3236038-3236057 | None:intergenic | 20.0% |
| !! | TTGATATTCACTATAAACAT+TGG | - | chr1_1:3236284-3236303 | None:intergenic | 20.0% |
| !! | CAAATATGAAAAATTGTCAA+TGG | - | chr1_1:3236564-3236583 | None:intergenic | 20.0% |
| !!! | ATATGTTTTTTCTTCATGGA+AGG | + | chr1_1:3235058-3235077 | Msa0001570:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGAA+GGG | + | chr1_1:3235059-3235078 | Msa0001570:CDS | 25.0% |
| ! | CATTTGCATAATTAGGATTT+AGG | - | chr1_1:3235278-3235297 | None:intergenic | 25.0% |
| ! | AATGGTTCATTTGCATAATT+AGG | - | chr1_1:3235285-3235304 | None:intergenic | 25.0% |
| ! | TTGTCAATATTGGTAAGAAA+CGG | + | chr1_1:3235793-3235812 | Msa0001570:CDS | 25.0% |
| !!! | ATATGTTTTTTCTTCATGGA+AGG | + | chr1_1:3235058-3235077 | Msa0001570:CDS | 25.0% |
| !!! | TATGTTTTTTCTTCATGGAA+GGG | + | chr1_1:3235059-3235078 | Msa0001570:CDS | 25.0% |
| ! | CATTTGCATAATTAGGATTT+AGG | - | chr1_1:3235278-3235297 | None:intergenic | 25.0% |
| ! | AATGGTTCATTTGCATAATT+AGG | - | chr1_1:3235285-3235304 | None:intergenic | 25.0% |
| ! | TTGTCAATATTGGTAAGAAA+CGG | + | chr1_1:3235793-3235812 | Msa0001570:CDS | 25.0% |
| GACTTGAATCAAAAGGATAA+GGG | - | chr1_1:3234621-3234640 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | - | chr1_1:3234697-3234716 | None:intergenic | 30.0% | |
| ACTAAGATTGAAAACTTCTC+TGG | - | chr1_1:3234698-3234717 | None:intergenic | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | + | chr1_1:3234869-3234888 | Msa0001570:CDS | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | + | chr1_1:3234870-3234889 | Msa0001570:CDS | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | - | chr1_1:3234907-3234926 | None:intergenic | 30.0% | |
| ! | AATCTTGTTTATGTAATGCC+AGG | + | chr1_1:3234916-3234935 | Msa0001570:CDS | 30.0% |
| ! | TTGCAATTTATTGTTGCTTG+AGG | + | chr1_1:3235137-3235156 | Msa0001570:CDS | 30.0% |
| ! | AATAGTTCCTTTTAGCAAGT+TGG | + | chr1_1:3235188-3235207 | Msa0001570:CDS | 30.0% |
| ! | ATAGTTCCTTTTAGCAAGTT+GGG | + | chr1_1:3235189-3235208 | Msa0001570:CDS | 30.0% |
| !! | TTTTAGCAAGTTGGGTTTTA+GGG | + | chr1_1:3235197-3235216 | Msa0001570:CDS | 30.0% |
| GTACTAACCAAGTTAGATTA+AGG | + | chr1_1:3235250-3235269 | Msa0001570:CDS | 30.0% | |
| TTAGGAACCTTAATCTAACT+TGG | - | chr1_1:3235260-3235279 | None:intergenic | 30.0% | |
| ! | AATGGATTTAGAGATAGATG+AGG | + | chr1_1:3235461-3235480 | Msa0001570:CDS | 30.0% |
| !! | AAAGTCTAGGTGGTTATTTT+TGG | + | chr1_1:3235565-3235584 | Msa0001570:CDS | 30.0% |
| !!! | AAGTCTAGGTGGTTATTTTT+GGG | + | chr1_1:3235566-3235585 | Msa0001570:CDS | 30.0% |
| !!! | GGTAGTTTTAAACATATCCT+TGG | + | chr1_1:3235588-3235607 | Msa0001570:CDS | 30.0% |
| TGTCAATATTGGTAAGAAAC+GGG | + | chr1_1:3235794-3235813 | Msa0001570:CDS | 30.0% | |
| GATTTGCATTCTTTATCTCA+TGG | - | chr1_1:3235932-3235951 | None:intergenic | 30.0% | |
| ! | GCAAATTTATCATCTTTTCG+AGG | + | chr1_1:3236008-3236027 | Msa0001570:CDS | 30.0% |
| !! | ATTTATCATCTTTTCGAGGT+TGG | + | chr1_1:3236012-3236031 | Msa0001570:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | - | chr1_1:3236140-3236159 | None:intergenic | 30.0% |
| !!! | TTTTTAGGCTTGTTTTGAGA+AGG | - | chr1_1:3236152-3236171 | None:intergenic | 30.0% |
| TTCTCAAAACAAGCCTAAAA+AGG | + | chr1_1:3236151-3236170 | Msa0001570:CDS | 30.0% | |
| ! | AGTAAGAATAGAGCCTTTTT+AGG | - | chr1_1:3236167-3236186 | None:intergenic | 30.0% |
| ! | TCTCATTGGAACAAAAGTAT+TGG | + | chr1_1:3236223-3236242 | Msa0001570:CDS | 30.0% |
| !! | ATTGGAACAAAAGTATTGGA+AGG | + | chr1_1:3236227-3236246 | Msa0001570:CDS | 30.0% |
| AAATATCCAGGATCAAAATC+TGG | + | chr1_1:3236410-3236429 | Msa0001570:CDS | 30.0% | |
| !!! | ACCATTTTGAAACACAAAGA+GGG | - | chr1_1:3236438-3236457 | None:intergenic | 30.0% |
| !!! | TTGCAAGAAGTTTTGAAGAA+AGG | + | chr1_1:3236515-3236534 | Msa0001570:CDS | 30.0% |
| TATGAAAAATTGTCAATGGG+AGG | - | chr1_1:3236560-3236579 | None:intergenic | 30.0% | |
| GCTTGTAAACACATTTAAGT+AGG | - | chr1_1:3236594-3236613 | None:intergenic | 30.0% | |
| GACTTGAATCAAAAGGATAA+GGG | - | chr1_1:3234621-3234640 | None:intergenic | 30.0% | |
| CTAAGATTGAAAACTTCTCT+GGG | - | chr1_1:3234697-3234716 | None:intergenic | 30.0% | |
| ACTAAGATTGAAAACTTCTC+TGG | - | chr1_1:3234698-3234717 | None:intergenic | 30.0% | |
| TTAAACCATTGCTTGGTATT+TGG | + | chr1_1:3234869-3234888 | Msa0001570:CDS | 30.0% | |
| TAAACCATTGCTTGGTATTT+GGG | + | chr1_1:3234870-3234889 | Msa0001570:CDS | 30.0% | |
| TAAACAAGATTACCAAGTTC+AGG | - | chr1_1:3234907-3234926 | None:intergenic | 30.0% | |
| ! | AATCTTGTTTATGTAATGCC+AGG | + | chr1_1:3234916-3234935 | Msa0001570:CDS | 30.0% |
| ! | TTGCAATTTATTGTTGCTTG+AGG | + | chr1_1:3235137-3235156 | Msa0001570:CDS | 30.0% |
| ! | AATAGTTCCTTTTAGCAAGT+TGG | + | chr1_1:3235188-3235207 | Msa0001570:CDS | 30.0% |
| ! | ATAGTTCCTTTTAGCAAGTT+GGG | + | chr1_1:3235189-3235208 | Msa0001570:CDS | 30.0% |
| !! | TTTTAGCAAGTTGGGTTTTA+GGG | + | chr1_1:3235197-3235216 | Msa0001570:CDS | 30.0% |
| GTACTAACCAAGTTAGATTA+AGG | + | chr1_1:3235250-3235269 | Msa0001570:CDS | 30.0% | |
| TTAGGAACCTTAATCTAACT+TGG | - | chr1_1:3235260-3235279 | None:intergenic | 30.0% | |
| ! | AATGGATTTAGAGATAGATG+AGG | + | chr1_1:3235461-3235480 | Msa0001570:CDS | 30.0% |
| !! | AAAGTCTAGGTGGTTATTTT+TGG | + | chr1_1:3235565-3235584 | Msa0001570:CDS | 30.0% |
| !!! | AAGTCTAGGTGGTTATTTTT+GGG | + | chr1_1:3235566-3235585 | Msa0001570:CDS | 30.0% |
| !!! | GGTAGTTTTAAACATATCCT+TGG | + | chr1_1:3235588-3235607 | Msa0001570:CDS | 30.0% |
| TGTCAATATTGGTAAGAAAC+GGG | + | chr1_1:3235794-3235813 | Msa0001570:CDS | 30.0% | |
| GATTTGCATTCTTTATCTCA+TGG | - | chr1_1:3235932-3235951 | None:intergenic | 30.0% | |
| ! | GCAAATTTATCATCTTTTCG+AGG | + | chr1_1:3236008-3236027 | Msa0001570:CDS | 30.0% |
| !! | ATTTATCATCTTTTCGAGGT+TGG | + | chr1_1:3236012-3236031 | Msa0001570:CDS | 30.0% |
| !! | TTTTGAGAAGGTTTTTCATG+AGG | - | chr1_1:3236140-3236159 | None:intergenic | 30.0% |
| !!! | TTTTTAGGCTTGTTTTGAGA+AGG | - | chr1_1:3236152-3236171 | None:intergenic | 30.0% |
| TTCTCAAAACAAGCCTAAAA+AGG | + | chr1_1:3236151-3236170 | Msa0001570:CDS | 30.0% | |
| ! | AGTAAGAATAGAGCCTTTTT+AGG | - | chr1_1:3236167-3236186 | None:intergenic | 30.0% |
| ! | TCTCATTGGAACAAAAGTAT+TGG | + | chr1_1:3236223-3236242 | Msa0001570:CDS | 30.0% |
| !! | ATTGGAACAAAAGTATTGGA+AGG | + | chr1_1:3236227-3236246 | Msa0001570:CDS | 30.0% |
| AAATATCCAGGATCAAAATC+TGG | + | chr1_1:3236410-3236429 | Msa0001570:CDS | 30.0% | |
| !!! | ACCATTTTGAAACACAAAGA+GGG | - | chr1_1:3236438-3236457 | None:intergenic | 30.0% |
| !!! | TTGCAAGAAGTTTTGAAGAA+AGG | + | chr1_1:3236515-3236534 | Msa0001570:CDS | 30.0% |
| TATGAAAAATTGTCAATGGG+AGG | - | chr1_1:3236560-3236579 | None:intergenic | 30.0% | |
| GCTTGTAAACACATTTAAGT+AGG | - | chr1_1:3236594-3236613 | None:intergenic | 30.0% | |
| GAATCAAAAGGATAAGGGTA+GGG | - | chr1_1:3234616-3234635 | None:intergenic | 35.0% | |
| TGAATCAAAAGGATAAGGGT+AGG | - | chr1_1:3234617-3234636 | None:intergenic | 35.0% | |
| GGACTTGAATCAAAAGGATA+AGG | - | chr1_1:3234622-3234641 | None:intergenic | 35.0% | |
| ! | ATAAGCGGACTTGAATCAAA+AGG | - | chr1_1:3234628-3234647 | None:intergenic | 35.0% |
| TCATCTGGTAGATGAATAAG+CGG | - | chr1_1:3234643-3234662 | None:intergenic | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | - | chr1_1:3234674-3234693 | None:intergenic | 35.0% | |
| ! | TGAAAACTTCTCTGGGAATT+AGG | - | chr1_1:3234690-3234709 | None:intergenic | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | + | chr1_1:3234743-3234762 | Msa0001570:CDS | 35.0% |
| TTGAGTGTTAAACCATTGCT+TGG | + | chr1_1:3234862-3234881 | Msa0001570:CDS | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | + | chr1_1:3234995-3235014 | Msa0001570:CDS | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | - | chr1_1:3234999-3235018 | None:intergenic | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | - | chr1_1:3235024-3235043 | None:intergenic | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | + | chr1_1:3235030-3235049 | Msa0001570:CDS | 35.0% | |
| !! | CTAAAACCCAACTTGCTAAA+AGG | - | chr1_1:3235198-3235217 | None:intergenic | 35.0% |
| !! | CTTTTAGCAAGTTGGGTTTT+AGG | + | chr1_1:3235196-3235215 | Msa0001570:CDS | 35.0% |
| AACCATTCTTTCCTAGATCA+AGG | + | chr1_1:3235298-3235317 | Msa0001570:CDS | 35.0% | |
| ACCATTCTTTCCTAGATCAA+GGG | + | chr1_1:3235299-3235318 | Msa0001570:CDS | 35.0% | |
| ! | TGACTATCCTTATTGATTGG+AGG | - | chr1_1:3235525-3235544 | None:intergenic | 35.0% |
| GTGTGACTATCCTTATTGAT+TGG | - | chr1_1:3235528-3235547 | None:intergenic | 35.0% | |
| TGCATCAAGAGAAAAAGTCT+AGG | + | chr1_1:3235552-3235571 | Msa0001570:CDS | 35.0% | |
| ATCAAGAGAAAAAGTCTAGG+TGG | + | chr1_1:3235555-3235574 | Msa0001570:CDS | 35.0% | |
| !!! | AGTCTAGGTGGTTATTTTTG+GGG | + | chr1_1:3235567-3235586 | Msa0001570:CDS | 35.0% |
| CAATTGAACTAGATCTTCCA+AGG | - | chr1_1:3235608-3235627 | None:intergenic | 35.0% | |
| CAATTGTACTAGATCTTCGA+TGG | - | chr1_1:3235686-3235705 | None:intergenic | 35.0% | |
| CGAAGATCTAGTACAATTGA+TGG | + | chr1_1:3235687-3235706 | Msa0001570:CDS | 35.0% | |
| AATATTGACAACACTGCCAT+CGG | - | chr1_1:3235706-3235725 | None:intergenic | 35.0% | |
| GTCAATATTGGTAAGAAACG+GGG | + | chr1_1:3235795-3235814 | Msa0001570:CDS | 35.0% | |
| GGCCGAATATGAACAAAAAT+TGG | + | chr1_1:3236033-3236052 | Msa0001570:CDS | 35.0% | |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | - | chr1_1:3236077-3236096 | None:intergenic | 35.0% |
| GCATACACTTGATCTTCTTT+AGG | - | chr1_1:3236089-3236108 | None:intergenic | 35.0% | |
| AAAGAAGATCAAGTGTATGC+TGG | + | chr1_1:3236089-3236108 | Msa0001570:CDS | 35.0% | |
| !! | ATCAAGTGTATGCTGGTTTA+TGG | + | chr1_1:3236096-3236115 | Msa0001570:CDS | 35.0% |
| !! | TCAAGTGTATGCTGGTTTAT+GGG | + | chr1_1:3236097-3236116 | Msa0001570:CDS | 35.0% |
| CTTACTATTGCTCTCTTACT+CGG | + | chr1_1:3236181-3236200 | Msa0001570:CDS | 35.0% | |
| ATAAACATTGGCGAACCATT+AGG | - | chr1_1:3236272-3236291 | None:intergenic | 35.0% | |
| ATTTCCTTGGAACACTGATA+GGG | + | chr1_1:3236322-3236341 | Msa0001570:CDS | 35.0% | |
| GTGTTCGATATTCATCGATA+AGG | - | chr1_1:3236351-3236370 | None:intergenic | 35.0% | |
| ! | AATATCGAACACGCTTTTGT+GGG | + | chr1_1:3236359-3236378 | Msa0001570:CDS | 35.0% |
| TCCCTCTTTGTGTTTCAAAA+TGG | + | chr1_1:3236434-3236453 | Msa0001570:CDS | 35.0% | |
| !!! | CACCATTTTGAAACACAAAG+AGG | - | chr1_1:3236439-3236458 | None:intergenic | 35.0% |
| !! | ATGGTGTTATTGCCTTTGTT+TGG | + | chr1_1:3236453-3236472 | Msa0001570:CDS | 35.0% |
| ! | TGTTATTGCCTTTGTTTGGA+AGG | + | chr1_1:3236457-3236476 | Msa0001570:CDS | 35.0% |
| TCTTGATTCCTTCCAAACAA+AGG | - | chr1_1:3236468-3236487 | None:intergenic | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | - | chr1_1:3236501-3236520 | None:intergenic | 35.0% | |
| GAATCAAAAGGATAAGGGTA+GGG | - | chr1_1:3234616-3234635 | None:intergenic | 35.0% | |
| TGAATCAAAAGGATAAGGGT+AGG | - | chr1_1:3234617-3234636 | None:intergenic | 35.0% | |
| GGACTTGAATCAAAAGGATA+AGG | - | chr1_1:3234622-3234641 | None:intergenic | 35.0% | |
| ! | ATAAGCGGACTTGAATCAAA+AGG | - | chr1_1:3234628-3234647 | None:intergenic | 35.0% |
| TCATCTGGTAGATGAATAAG+CGG | - | chr1_1:3234643-3234662 | None:intergenic | 35.0% | |
| AATTAGGTACCTTGAAACTG+TGG | - | chr1_1:3234674-3234693 | None:intergenic | 35.0% | |
| ! | TGAAAACTTCTCTGGGAATT+AGG | - | chr1_1:3234690-3234709 | None:intergenic | 35.0% |
| ! | TTGCATCTTCTGAGAAAGTT+TGG | + | chr1_1:3234743-3234762 | Msa0001570:CDS | 35.0% |
| TTGAGTGTTAAACCATTGCT+TGG | + | chr1_1:3234862-3234881 | Msa0001570:CDS | 35.0% | |
| TCCAAGATTGTTCTATCCTT+TGG | + | chr1_1:3234995-3235014 | Msa0001570:CDS | 35.0% | |
| ACCAAAGGATAGAACAATCT+TGG | - | chr1_1:3234999-3235018 | None:intergenic | 35.0% | |
| TCGCAAACAATTTCAAACAC+AGG | - | chr1_1:3235024-3235043 | None:intergenic | 35.0% | |
| GAAATTGTTTGCGATTTCGA+TGG | + | chr1_1:3235030-3235049 | Msa0001570:CDS | 35.0% | |
| !! | CTAAAACCCAACTTGCTAAA+AGG | - | chr1_1:3235198-3235217 | None:intergenic | 35.0% |
| !! | CTTTTAGCAAGTTGGGTTTT+AGG | + | chr1_1:3235196-3235215 | Msa0001570:CDS | 35.0% |
| AACCATTCTTTCCTAGATCA+AGG | + | chr1_1:3235298-3235317 | Msa0001570:CDS | 35.0% | |
| ACCATTCTTTCCTAGATCAA+GGG | + | chr1_1:3235299-3235318 | Msa0001570:CDS | 35.0% | |
| ! | TGACTATCCTTATTGATTGG+AGG | - | chr1_1:3235525-3235544 | None:intergenic | 35.0% |
| GTGTGACTATCCTTATTGAT+TGG | - | chr1_1:3235528-3235547 | None:intergenic | 35.0% | |
| TGCATCAAGAGAAAAAGTCT+AGG | + | chr1_1:3235552-3235571 | Msa0001570:CDS | 35.0% | |
| ATCAAGAGAAAAAGTCTAGG+TGG | + | chr1_1:3235555-3235574 | Msa0001570:CDS | 35.0% | |
| !!! | AGTCTAGGTGGTTATTTTTG+GGG | + | chr1_1:3235567-3235586 | Msa0001570:CDS | 35.0% |
| CAATTGAACTAGATCTTCCA+AGG | - | chr1_1:3235608-3235627 | None:intergenic | 35.0% | |
| CAATTGTACTAGATCTTCGA+TGG | - | chr1_1:3235686-3235705 | None:intergenic | 35.0% | |
| CGAAGATCTAGTACAATTGA+TGG | + | chr1_1:3235687-3235706 | Msa0001570:CDS | 35.0% | |
| AATATTGACAACACTGCCAT+CGG | - | chr1_1:3235706-3235725 | None:intergenic | 35.0% | |
| GTCAATATTGGTAAGAAACG+GGG | + | chr1_1:3235795-3235814 | Msa0001570:CDS | 35.0% | |
| GGCCGAATATGAACAAAAAT+TGG | + | chr1_1:3236033-3236052 | Msa0001570:CDS | 35.0% | |
| ! | TCTTCTTTAGGAACTTGCAA+AGG | - | chr1_1:3236077-3236096 | None:intergenic | 35.0% |
| GCATACACTTGATCTTCTTT+AGG | - | chr1_1:3236089-3236108 | None:intergenic | 35.0% | |
| AAAGAAGATCAAGTGTATGC+TGG | + | chr1_1:3236089-3236108 | Msa0001570:CDS | 35.0% | |
| !! | ATCAAGTGTATGCTGGTTTA+TGG | + | chr1_1:3236096-3236115 | Msa0001570:CDS | 35.0% |
| !! | TCAAGTGTATGCTGGTTTAT+GGG | + | chr1_1:3236097-3236116 | Msa0001570:CDS | 35.0% |
| CTTACTATTGCTCTCTTACT+CGG | + | chr1_1:3236181-3236200 | Msa0001570:CDS | 35.0% | |
| ATAAACATTGGCGAACCATT+AGG | - | chr1_1:3236272-3236291 | None:intergenic | 35.0% | |
| ATTTCCTTGGAACACTGATA+GGG | + | chr1_1:3236322-3236341 | Msa0001570:CDS | 35.0% | |
| GTGTTCGATATTCATCGATA+AGG | - | chr1_1:3236351-3236370 | None:intergenic | 35.0% | |
| ! | AATATCGAACACGCTTTTGT+GGG | + | chr1_1:3236359-3236378 | Msa0001570:CDS | 35.0% |
| TCCCTCTTTGTGTTTCAAAA+TGG | + | chr1_1:3236434-3236453 | Msa0001570:CDS | 35.0% | |
| !!! | CACCATTTTGAAACACAAAG+AGG | - | chr1_1:3236439-3236458 | None:intergenic | 35.0% |
| !! | ATGGTGTTATTGCCTTTGTT+TGG | + | chr1_1:3236453-3236472 | Msa0001570:CDS | 35.0% |
| ! | TGTTATTGCCTTTGTTTGGA+AGG | + | chr1_1:3236457-3236476 | Msa0001570:CDS | 35.0% |
| TCTTGATTCCTTCCAAACAA+AGG | - | chr1_1:3236468-3236487 | None:intergenic | 35.0% | |
| TTGCAAGTTAAGTCTTTGCA+GGG | - | chr1_1:3236501-3236520 | None:intergenic | 35.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | + | chr1_1:3234662-3234681 | Msa0001570:CDS | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | - | chr1_1:3234877-3234896 | None:intergenic | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | + | chr1_1:3234892-3234911 | Msa0001570:CDS | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | - | chr1_1:3234937-3234956 | None:intergenic | 40.0% | |
| !! | CTCAGGAGGTTGTTTCTTTA+GGG | + | chr1_1:3234971-3234990 | Msa0001570:CDS | 40.0% |
| TTTCAAACACAGGTGACCAA+AGG | - | chr1_1:3235014-3235033 | None:intergenic | 40.0% | |
| GGGGTAGATTGTGTTTATCA+TGG | + | chr1_1:3235090-3235109 | Msa0001570:CDS | 40.0% | |
| ! | TGTTGCTTGAGGTTGAATCT+AGG | + | chr1_1:3235148-3235167 | Msa0001570:CDS | 40.0% |
| ATCTAGGAAGCAAGATAGTG+AGG | + | chr1_1:3235164-3235183 | Msa0001570:CDS | 40.0% | |
| TCCCTTGATCTAGGAAAGAA+TGG | - | chr1_1:3235303-3235322 | None:intergenic | 40.0% | |
| ACATAGTCATCCCTTGATCT+AGG | - | chr1_1:3235312-3235331 | None:intergenic | 40.0% | |
| AATTCTCAAGGGGAAGAAGT+TGG | + | chr1_1:3235435-3235454 | Msa0001570:CDS | 40.0% | |
| ! | CGCTTTTCCTCCAATCAATA+AGG | + | chr1_1:3235515-3235534 | Msa0001570:CDS | 40.0% |
| GATGGCAGTGTTGTCAATAT+TGG | + | chr1_1:3235705-3235724 | Msa0001570:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | - | chr1_1:3235830-3235849 | None:intergenic | 40.0% | |
| ATGGCTTGAACTAATCCCTA+TGG | - | chr1_1:3235913-3235932 | None:intergenic | 40.0% | |
| !! | CAAGTGTATGCTGGTTTATG+GGG | + | chr1_1:3236098-3236117 | Msa0001570:CDS | 40.0% |
| AAGGGACAACAACTTCTCAT+TGG | + | chr1_1:3236209-3236228 | Msa0001570:CDS | 40.0% | |
| CAAGGAAATGGTTCAGATGA+AGG | - | chr1_1:3236311-3236330 | None:intergenic | 40.0% | |
| CTTCATCTGAACCATTTCCT+TGG | + | chr1_1:3236309-3236328 | Msa0001570:CDS | 40.0% | |
| CTATCAGTGTTCCAAGGAAA+TGG | - | chr1_1:3236323-3236342 | None:intergenic | 40.0% | |
| CATTTCCTTGGAACACTGAT+AGG | + | chr1_1:3236321-3236340 | Msa0001570:CDS | 40.0% | |
| ! | GAATATCGAACACGCTTTTG+TGG | + | chr1_1:3236358-3236377 | Msa0001570:CDS | 40.0% |
| GGCTATGGATTCAAATATCC+AGG | + | chr1_1:3236398-3236417 | Msa0001570:CDS | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | - | chr1_1:3236502-3236521 | None:intergenic | 40.0% | |
| ATGTGTTTGCCACAGTTTCA+AGG | + | chr1_1:3234662-3234681 | Msa0001570:CDS | 40.0% | |
| TGAACCCAAATACCAAGCAA+TGG | - | chr1_1:3234877-3234896 | None:intergenic | 40.0% | |
| GTTCAACAGAATCCTGAACT+TGG | + | chr1_1:3234892-3234911 | Msa0001570:CDS | 40.0% | |
| GCTACAACAGAAACAAAACC+TGG | - | chr1_1:3234937-3234956 | None:intergenic | 40.0% | |
| !! | CTCAGGAGGTTGTTTCTTTA+GGG | + | chr1_1:3234971-3234990 | Msa0001570:CDS | 40.0% |
| TTTCAAACACAGGTGACCAA+AGG | - | chr1_1:3235014-3235033 | None:intergenic | 40.0% | |
| GGGGTAGATTGTGTTTATCA+TGG | + | chr1_1:3235090-3235109 | Msa0001570:CDS | 40.0% | |
| ! | TGTTGCTTGAGGTTGAATCT+AGG | + | chr1_1:3235148-3235167 | Msa0001570:CDS | 40.0% |
| ATCTAGGAAGCAAGATAGTG+AGG | + | chr1_1:3235164-3235183 | Msa0001570:CDS | 40.0% | |
| TCCCTTGATCTAGGAAAGAA+TGG | - | chr1_1:3235303-3235322 | None:intergenic | 40.0% | |
| ACATAGTCATCCCTTGATCT+AGG | - | chr1_1:3235312-3235331 | None:intergenic | 40.0% | |
| AATTCTCAAGGGGAAGAAGT+TGG | + | chr1_1:3235435-3235454 | Msa0001570:CDS | 40.0% | |
| ! | CGCTTTTCCTCCAATCAATA+AGG | + | chr1_1:3235515-3235534 | Msa0001570:CDS | 40.0% |
| GATGGCAGTGTTGTCAATAT+TGG | + | chr1_1:3235705-3235724 | Msa0001570:CDS | 40.0% | |
| CGATTGTACTAGATCTTCGA+TGG | - | chr1_1:3235830-3235849 | None:intergenic | 40.0% | |
| ATGGCTTGAACTAATCCCTA+TGG | - | chr1_1:3235913-3235932 | None:intergenic | 40.0% | |
| !! | CAAGTGTATGCTGGTTTATG+GGG | + | chr1_1:3236098-3236117 | Msa0001570:CDS | 40.0% |
| AAGGGACAACAACTTCTCAT+TGG | + | chr1_1:3236209-3236228 | Msa0001570:CDS | 40.0% | |
| CAAGGAAATGGTTCAGATGA+AGG | - | chr1_1:3236311-3236330 | None:intergenic | 40.0% | |
| CTTCATCTGAACCATTTCCT+TGG | + | chr1_1:3236309-3236328 | Msa0001570:CDS | 40.0% | |
| CTATCAGTGTTCCAAGGAAA+TGG | - | chr1_1:3236323-3236342 | None:intergenic | 40.0% | |
| CATTTCCTTGGAACACTGAT+AGG | + | chr1_1:3236321-3236340 | Msa0001570:CDS | 40.0% | |
| ! | GAATATCGAACACGCTTTTG+TGG | + | chr1_1:3236358-3236377 | Msa0001570:CDS | 40.0% |
| GGCTATGGATTCAAATATCC+AGG | + | chr1_1:3236398-3236417 | Msa0001570:CDS | 40.0% | |
| CTTGCAAGTTAAGTCTTTGC+AGG | - | chr1_1:3236502-3236521 | None:intergenic | 40.0% | |
| ACTGTGGCAAACACATCATC+TGG | - | chr1_1:3234658-3234677 | None:intergenic | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | + | chr1_1:3234797-3234816 | Msa0001570:CDS | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | + | chr1_1:3234954-3234973 | Msa0001570:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | + | chr1_1:3234957-3234976 | Msa0001570:CDS | 45.0% | |
| CCTAAAGAAACAACCTCCTG+AGG | - | chr1_1:3234973-3234992 | None:intergenic | 45.0% | |
| !! | CCTCAGGAGGTTGTTTCTTT+AGG | + | chr1_1:3234970-3234989 | Msa0001570:CDS | 45.0% |
| TCTTCATGGAAGGGAAGAAG+AGG | + | chr1_1:3235068-3235087 | Msa0001570:CDS | 45.0% | |
| CTTCATGGAAGGGAAGAAGA+GGG | + | chr1_1:3235069-3235088 | Msa0001570:CDS | 45.0% | |
| TTCATGGAAGGGAAGAAGAG+GGG | + | chr1_1:3235070-3235089 | Msa0001570:CDS | 45.0% | |
| CAAAGATCTAGTACAGCCGA+TGG | + | chr1_1:3235765-3235784 | Msa0001570:CDS | 45.0% | |
| GAACTAGGGACAATGCCATA+GGG | + | chr1_1:3235895-3235914 | Msa0001570:CDS | 45.0% | |
| CTCTCTTACTCGGAGTCAAA+GGG | + | chr1_1:3236191-3236210 | Msa0001570:CDS | 45.0% | |
| !! | TTTGTGGGAGAAGGTATTGC+AGG | + | chr1_1:3236374-3236393 | Msa0001570:CDS | 45.0% |
| !! | AGGGAACCAGATTTTGATCC+TGG | - | chr1_1:3236419-3236438 | None:intergenic | 45.0% |
| ACTGTGGCAAACACATCATC+TGG | - | chr1_1:3234658-3234677 | None:intergenic | 45.0% | |
| CACTCAAAGACCTTGTTGAG+TGG | + | chr1_1:3234797-3234816 | Msa0001570:CDS | 45.0% | |
| AGCGTGTCGAATAATACCTC+AGG | + | chr1_1:3234954-3234973 | Msa0001570:CDS | 45.0% | |
| GTGTCGAATAATACCTCAGG+AGG | + | chr1_1:3234957-3234976 | Msa0001570:CDS | 45.0% | |
| CCTAAAGAAACAACCTCCTG+AGG | - | chr1_1:3234973-3234992 | None:intergenic | 45.0% | |
| !! | CCTCAGGAGGTTGTTTCTTT+AGG | + | chr1_1:3234970-3234989 | Msa0001570:CDS | 45.0% |
| TCTTCATGGAAGGGAAGAAG+AGG | + | chr1_1:3235068-3235087 | Msa0001570:CDS | 45.0% | |
| CTTCATGGAAGGGAAGAAGA+GGG | + | chr1_1:3235069-3235088 | Msa0001570:CDS | 45.0% | |
| TTCATGGAAGGGAAGAAGAG+GGG | + | chr1_1:3235070-3235089 | Msa0001570:CDS | 45.0% | |
| CAAAGATCTAGTACAGCCGA+TGG | + | chr1_1:3235765-3235784 | Msa0001570:CDS | 45.0% | |
| GAACTAGGGACAATGCCATA+GGG | + | chr1_1:3235895-3235914 | Msa0001570:CDS | 45.0% | |
| CTCTCTTACTCGGAGTCAAA+GGG | + | chr1_1:3236191-3236210 | Msa0001570:CDS | 45.0% | |
| !! | TTTGTGGGAGAAGGTATTGC+AGG | + | chr1_1:3236374-3236393 | Msa0001570:CDS | 45.0% |
| !! | AGGGAACCAGATTTTGATCC+TGG | - | chr1_1:3236419-3236438 | None:intergenic | 45.0% |
| CACACTCTCTCCACTCAACA+AGG | - | chr1_1:3234810-3234829 | None:intergenic | 50.0% | |
| TCATGGAAGGGAAGAAGAGG+GGG | + | chr1_1:3235071-3235090 | Msa0001570:CDS | 50.0% | |
| ! | AGGGGAAGAAGTTGGCTCAA+TGG | + | chr1_1:3235443-3235462 | Msa0001570:CDS | 50.0% |
| CAGCTATTGTGTTGCGTTGC+TGG | - | chr1_1:3235731-3235750 | None:intergenic | 50.0% | |
| CAGCAACGCAACACAATAGC+TGG | + | chr1_1:3235729-3235748 | Msa0001570:CDS | 50.0% | |
| GGAACTAGGGACAATGCCAT+AGG | + | chr1_1:3235894-3235913 | Msa0001570:CDS | 50.0% | |
| !! | GTGTATGCTGGTTTATGGGG+CGG | + | chr1_1:3236101-3236120 | Msa0001570:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | + | chr1_1:3236110-3236129 | Msa0001570:CDS | 50.0% |
| ! | TATGGGGCGGTACTTTTGGA+TGG | + | chr1_1:3236114-3236133 | Msa0001570:CDS | 50.0% |
| GCTCTCTTACTCGGAGTCAA+AGG | + | chr1_1:3236190-3236209 | Msa0001570:CDS | 50.0% | |
| TGGCGAACCATTAGGATGCA+AGG | - | chr1_1:3236264-3236283 | None:intergenic | 50.0% | |
| GAGTCCCTATCAGTGTTCCA+AGG | - | chr1_1:3236329-3236348 | None:intergenic | 50.0% | |
| ! | GAACACGCTTTTGTGGGAGA+AGG | + | chr1_1:3236365-3236384 | Msa0001570:CDS | 50.0% |
| !! | GAAGGTATTGCAGGTGGCTA+TGG | + | chr1_1:3236383-3236402 | Msa0001570:CDS | 50.0% |
| TTGTCAATGGGAGGCAGAGA+AGG | - | chr1_1:3236551-3236570 | None:intergenic | 50.0% | |
| CACACTCTCTCCACTCAACA+AGG | - | chr1_1:3234810-3234829 | None:intergenic | 50.0% | |
| TCATGGAAGGGAAGAAGAGG+GGG | + | chr1_1:3235071-3235090 | Msa0001570:CDS | 50.0% | |
| ! | AGGGGAAGAAGTTGGCTCAA+TGG | + | chr1_1:3235443-3235462 | Msa0001570:CDS | 50.0% |
| CAGCTATTGTGTTGCGTTGC+TGG | - | chr1_1:3235731-3235750 | None:intergenic | 50.0% | |
| CAGCAACGCAACACAATAGC+TGG | + | chr1_1:3235729-3235748 | Msa0001570:CDS | 50.0% | |
| GGAACTAGGGACAATGCCAT+AGG | + | chr1_1:3235894-3235913 | Msa0001570:CDS | 50.0% | |
| !! | GTGTATGCTGGTTTATGGGG+CGG | + | chr1_1:3236101-3236120 | Msa0001570:CDS | 50.0% |
| ! | GGTTTATGGGGCGGTACTTT+TGG | + | chr1_1:3236110-3236129 | Msa0001570:CDS | 50.0% |
| ! | TATGGGGCGGTACTTTTGGA+TGG | + | chr1_1:3236114-3236133 | Msa0001570:CDS | 50.0% |
| GCTCTCTTACTCGGAGTCAA+AGG | + | chr1_1:3236190-3236209 | Msa0001570:CDS | 50.0% | |
| TGGCGAACCATTAGGATGCA+AGG | - | chr1_1:3236264-3236283 | None:intergenic | 50.0% | |
| GAGTCCCTATCAGTGTTCCA+AGG | - | chr1_1:3236329-3236348 | None:intergenic | 50.0% | |
| ! | GAACACGCTTTTGTGGGAGA+AGG | + | chr1_1:3236365-3236384 | Msa0001570:CDS | 50.0% |
| !! | GAAGGTATTGCAGGTGGCTA+TGG | + | chr1_1:3236383-3236402 | Msa0001570:CDS | 50.0% |
| TTGTCAATGGGAGGCAGAGA+AGG | - | chr1_1:3236551-3236570 | None:intergenic | 50.0% | |
| CATCAACACAACACAGCCGC+TGG | + | chr1_1:3235651-3235670 | Msa0001570:CDS | 55.0% | |
| ACACCACAACCGCAGGAACT+AGG | + | chr1_1:3235880-3235899 | Msa0001570:CDS | 55.0% | |
| CACCACAACCGCAGGAACTA+GGG | + | chr1_1:3235881-3235900 | Msa0001570:CDS | 55.0% | |
| GGCATTGTCCCTAGTTCCTG+CGG | - | chr1_1:3235892-3235911 | None:intergenic | 55.0% | |
| CGCTACGCCTTGCATCCTAA+TGG | + | chr1_1:3236254-3236273 | Msa0001570:CDS | 55.0% | |
| !! | GTGGGAGAAGGTATTGCAGG+TGG | + | chr1_1:3236377-3236396 | Msa0001570:CDS | 55.0% |
| CATCAACACAACACAGCCGC+TGG | + | chr1_1:3235651-3235670 | Msa0001570:CDS | 55.0% | |
| ACACCACAACCGCAGGAACT+AGG | + | chr1_1:3235880-3235899 | Msa0001570:CDS | 55.0% | |
| CACCACAACCGCAGGAACTA+GGG | + | chr1_1:3235881-3235900 | Msa0001570:CDS | 55.0% | |
| GGCATTGTCCCTAGTTCCTG+CGG | - | chr1_1:3235892-3235911 | None:intergenic | 55.0% | |
| CGCTACGCCTTGCATCCTAA+TGG | + | chr1_1:3236254-3236273 | Msa0001570:CDS | 55.0% | |
| !! | GTGGGAGAAGGTATTGCAGG+TGG | + | chr1_1:3236377-3236396 | Msa0001570:CDS | 55.0% |
| ACAACACAGCCGCTGGAGCA+AGG | + | chr1_1:3235658-3235677 | Msa0001570:CDS | 60.0% | |
| CAACACAGCCGCTGGAGCAA+GGG | + | chr1_1:3235659-3235678 | Msa0001570:CDS | 60.0% | |
| AACACAGCCGCTGGAGCAAG+GGG | + | chr1_1:3235660-3235679 | Msa0001570:CDS | 60.0% | |
| CAGCAACACACCACAACCGC+AGG | + | chr1_1:3235873-3235892 | Msa0001570:CDS | 60.0% | |
| GTCCCTAGTTCCTGCGGTTG+TGG | - | chr1_1:3235886-3235905 | None:intergenic | 60.0% | |
| ACAACACAGCCGCTGGAGCA+AGG | + | chr1_1:3235658-3235677 | Msa0001570:CDS | 60.0% | |
| CAACACAGCCGCTGGAGCAA+GGG | + | chr1_1:3235659-3235678 | Msa0001570:CDS | 60.0% | |
| AACACAGCCGCTGGAGCAAG+GGG | + | chr1_1:3235660-3235679 | Msa0001570:CDS | 60.0% | |
| CAGCAACACACCACAACCGC+AGG | + | chr1_1:3235873-3235892 | Msa0001570:CDS | 60.0% | |
| GTCCCTAGTTCCTGCGGTTG+TGG | - | chr1_1:3235886-3235905 | None:intergenic | 60.0% | |
| TCGATGGCCCCTTGCTCCAG+CGG | - | chr1_1:3235670-3235689 | None:intergenic | 65.0% | |
| TCGATGGCCCCTTGCTCCAG+CGG | - | chr1_1:3235670-3235689 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3234604 | 3236616 | 3234604 | ID=Msa0001570;Name=Msa0001570 |
| chr1_1 | mRNA | 3234604 | 3236616 | 3234604 | ID=Msa0001570-mRNA-1;Parent=Msa0001570;Name=Msa0001570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|670 |
| chr1_1 | exon | 3234604 | 3236616 | 3234604 | ID=Msa0001570-mRNA-1:exon:815;Parent=Msa0001570-mRNA-1 |
| chr1_1 | CDS | 3234604 | 3236616 | 3234604 | ID=Msa0001570-mRNA-1:cds;Parent=Msa0001570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
