Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001840 | XP_039685576.1 | 97.804 | 592 | 12 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1188 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001840 | sp|Q8L612|MACP1_ARATH | 57.166 | 614 | 231 | 11 | 5 | 588 | 8 | 619 | 0.0 | 712 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001840 | A0A396GWE6 | 97.804 | 592 | 12 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1188 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001840 | Msa0574940 | 0.806275 | 8.903817e-50 | -8.615850e-47 |
| Msa0001840 | Msa0930730 | 0.891432 | 3.993019e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001840 | MtrunA17_Chr8g0391931 | 97.804 | 592 | 12 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1188 |
| Msa0001840 | MtrunA17_Chr3g0122211 | 47.117 | 607 | 293 | 10 | 7 | 588 | 15 | 618 | 0.0 | 550 |
| Msa0001840 | MtrunA17_Chr8g0377631 | 46.440 | 618 | 298 | 10 | 1 | 588 | 3 | 617 | 0.0 | 548 |
| Msa0001840 | MtrunA17_Chr2g0277061 | 47.595 | 603 | 284 | 10 | 5 | 591 | 11 | 597 | 0.0 | 530 |
| Msa0001840 | MtrunA17_Chr8g0385121 | 46.050 | 595 | 300 | 9 | 6 | 591 | 10 | 592 | 3.61e-169 | 494 |
| Msa0001840 | MtrunA17_Chr4g0046841 | 42.617 | 596 | 322 | 8 | 6 | 587 | 22 | 611 | 7.12e-153 | 453 |
| Msa0001840 | MtrunA17_Chr2g0284691 | 41.345 | 595 | 283 | 14 | 9 | 588 | 22 | 565 | 8.19e-132 | 397 |
| Msa0001840 | MtrunA17_Chr4g0013011 | 39.226 | 594 | 323 | 11 | 9 | 588 | 14 | 583 | 4.03e-131 | 396 |
| Msa0001840 | MtrunA17_Chr8g0385131 | 38.475 | 590 | 319 | 13 | 6 | 588 | 13 | 565 | 4.22e-119 | 364 |
| Msa0001840 | MtrunA17_Chr8g0385181 | 38.462 | 585 | 313 | 11 | 6 | 588 | 13 | 552 | 2.83e-116 | 357 |
| Msa0001840 | MtrunA17_Chr8g0385171 | 37.025 | 316 | 152 | 7 | 6 | 311 | 13 | 291 | 2.35e-55 | 189 |
| Msa0001840 | MtrunA17_Chr8g0385161 | 36.630 | 273 | 142 | 4 | 315 | 587 | 1 | 242 | 1.54e-44 | 159 |
| Msa0001840 | MtrunA17_Chr7g0274871 | 39.695 | 131 | 70 | 5 | 7 | 135 | 128 | 251 | 1.45e-19 | 89.4 |
| Msa0001840 | MtrunA17_Chr8g0385141 | 43.158 | 95 | 53 | 1 | 120 | 213 | 20 | 114 | 4.00e-18 | 82.4 |
| Msa0001840 | MtrunA17_Chr8g0385151 | 57.447 | 47 | 20 | 0 | 266 | 312 | 2 | 48 | 1.72e-12 | 62.4 |
| Msa0001840 | MtrunA17_Chr7g0274901 | 42.353 | 85 | 48 | 1 | 357 | 440 | 1 | 85 | 1.71e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0001840 | AT1G14780.1 | 57.166 | 614 | 231 | 11 | 5 | 588 | 8 | 619 | 0.0 | 712 |
| Msa0001840 | AT4G24290.2 | 45.700 | 593 | 299 | 11 | 6 | 587 | 11 | 591 | 4.50e-171 | 499 |
| Msa0001840 | AT4G24290.3 | 45.700 | 593 | 299 | 11 | 6 | 587 | 11 | 591 | 4.50e-171 | 499 |
| Msa0001840 | AT1G28380.1 | 43.428 | 601 | 309 | 10 | 6 | 587 | 15 | 603 | 1.42e-152 | 452 |
| Msa0001840 | AT1G29690.1 | 39.425 | 591 | 299 | 10 | 6 | 588 | 21 | 560 | 8.16e-137 | 410 |
| Msa0001840 | AT4G24290.1 | 45.253 | 316 | 162 | 7 | 6 | 313 | 11 | 323 | 9.49e-82 | 261 |
Find 155 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAAATTCCAGATTTC+TGG | 0.083759 | 1_1:+3556461 | None:intergenic |
| CCAGGTCATTGGTTGGTTAC+TGG | 0.132677 | 1_1:-3556277 | Msa0001840:CDS |
| CCCATCACCTCTCTTCTTAA+AGG | 0.136687 | 1_1:-3557731 | Msa0001840:CDS |
| GGGTATTTCAATACAGTATT+TGG | 0.161336 | 1_1:-3560953 | Msa0001840:CDS |
| TCCCCTCTTTACACATATTA+TGG | 0.199778 | 1_1:+3557835 | None:intergenic |
| TCGACTTGACATCAGATTTC+AGG | 0.226789 | 1_1:-3561467 | Msa0001840:CDS |
| ATCGGTATTTACATAAAGTT+TGG | 0.231358 | 1_1:+3557196 | None:intergenic |
| GAGCTTTCTGTGCCAGGTTT+TGG | 0.247637 | 1_1:-3561387 | Msa0001840:CDS |
| TCAATTGCATCTGGTTTGTT+AGG | 0.252614 | 1_1:+3557767 | None:intergenic |
| AATTGGACAAAGGGTTCTTC+TGG | 0.255985 | 1_1:-3556490 | Msa0001840:CDS |
| TACTGTATATCCTAACAAAT+TGG | 0.278849 | 1_1:-3556073 | Msa0001840:three_prime_UTR |
| CAGGTCATTGGTTGGTTACT+GGG | 0.281666 | 1_1:-3556276 | Msa0001840:CDS |
| GTTGGTTACTGGGGCAAAAT+TGG | 0.294384 | 1_1:-3556266 | Msa0001840:CDS |
| TTCAAGCTGTTCCTTCTTCA+TGG | 0.298007 | 1_1:-3560805 | Msa0001840:CDS |
| TCTGGATTGTCCCAGAAATC+TGG | 0.299066 | 1_1:-3556472 | Msa0001840:CDS |
| CCAGCCGCCTTTGATGTCTT+TGG | 0.299845 | 1_1:-3558053 | Msa0001840:CDS |
| TCTGAGGTTATTGTTCTCTA+AGG | 0.301320 | 1_1:-3556539 | Msa0001840:CDS |
| GAAAATCAAACATACCTTAT+CGG | 0.325614 | 1_1:+3557178 | None:intergenic |
| CAGTGAAATACAATCCTAAA+TGG | 0.326415 | 1_1:-3556642 | Msa0001840:CDS |
| TTCTTAAAGGTGCTCCTGGC+AGG | 0.337014 | 1_1:-3557718 | Msa0001840:CDS |
| TTAGAAAGAAGAAGTGGATA+TGG | 0.339600 | 1_1:+3560836 | None:intergenic |
| ATGCCATCATTTGCAAGTCT+TGG | 0.340388 | 1_1:+3561677 | None:intergenic |
| TTTCTCACTCTCAATTTAAT+GGG | 0.346071 | 1_1:-3557221 | Msa0001840:CDS |
| TCAGATTCATCGAGAACTTT+GGG | 0.359267 | 1_1:-3558582 | Msa0001840:intron |
| ATTCACTGTGGCTGCTCACT+TGG | 0.359395 | 1_1:+3557804 | None:intergenic |
| GTTGACATTAAATGTGATAA+AGG | 0.365745 | 1_1:-3561345 | Msa0001840:CDS |
| ACAAAGTGTTTAGGTATTGA+TGG | 0.367267 | 1_1:-3560893 | Msa0001840:CDS |
| GGCAAAATTGGTGATGGATA+AGG | 0.367412 | 1_1:-3556254 | Msa0001840:CDS |
| TTGGGTTTGATGAGGGTTCA+TGG | 0.369436 | 1_1:-3560934 | Msa0001840:CDS |
| TGCCATCATTTGCAAGTCTT+GGG | 0.374914 | 1_1:+3561678 | None:intergenic |
| TGAGAAAATTCCAGATTTCT+GGG | 0.378202 | 1_1:+3556462 | None:intergenic |
| CATTTAGGATTGTATTTCAC+TGG | 0.381293 | 1_1:+3556643 | None:intergenic |
| CTATATATATCCAATTTGTT+AGG | 0.382239 | 1_1:+3556063 | None:intergenic |
| CTAACAAATTGGATATATAT+AGG | 0.383397 | 1_1:-3556062 | Msa0001840:three_prime_UTR |
| GCAATAAGCACATCAATATC+TGG | 0.384136 | 1_1:-3556439 | Msa0001840:CDS |
| TAATAGATGTTCCACGTGTA+TGG | 0.390541 | 1_1:+3556786 | None:intergenic |
| GGTATTTCAATACAGTATTT+GGG | 0.391201 | 1_1:-3560952 | Msa0001840:CDS |
| CCGCAAATTGTTGCGTTCAA+TGG | 0.394225 | 1_1:-3558029 | Msa0001840:CDS |
| GCAAAATTGGTGATGGATAA+GGG | 0.394648 | 1_1:-3556253 | Msa0001840:CDS |
| TAAACTTACATCGAAGATAA+AGG | 0.397739 | 1_1:+3557672 | None:intergenic |
| ATCAGATTCATCGAGAACTT+TGG | 0.399107 | 1_1:-3558583 | Msa0001840:intron |
| GCAGCTAACACAAAGTGTTT+AGG | 0.401057 | 1_1:-3560902 | Msa0001840:CDS |
| AAGAATCACTTGGATGATCT+TGG | 0.408794 | 1_1:-3558469 | Msa0001840:CDS |
| AAAAGAGAGCTTTCTGTGCC+AGG | 0.411773 | 1_1:-3561393 | Msa0001840:CDS |
| AAGCTAAAATCAATTGCATC+TGG | 0.418424 | 1_1:+3557758 | None:intergenic |
| ACTACCAAGGATACAAGCTT+TGG | 0.419053 | 1_1:-3557304 | Msa0001840:CDS |
| GTTAAATCAAATTGGACAAA+GGG | 0.419356 | 1_1:-3556499 | Msa0001840:CDS |
| TATCTCTAGTTGTATTATAG+AGG | 0.429857 | 1_1:-3556026 | Msa0001840:three_prime_UTR |
| TCAAGCTGTTCCTTCTTCAT+GGG | 0.432632 | 1_1:-3560804 | Msa0001840:CDS |
| TCGGTATTTACATAAAGTTT+GGG | 0.433680 | 1_1:+3557197 | None:intergenic |
| CCATTGAACGCAACAATTTG+CGG | 0.434084 | 1_1:+3558029 | None:intergenic |
| TTGAAGGAATGAAATGCAAC+AGG | 0.437435 | 1_1:-3557029 | Msa0001840:intron |
| TTTGGGACTCACATCCTTGT+GGG | 0.445545 | 1_1:-3558565 | Msa0001840:CDS |
| CTTGGAGAACAGTTATTTAG+TGG | 0.446466 | 1_1:-3558451 | Msa0001840:CDS |
| CTTAAAGGTGCTCCTGGCAG+GGG | 0.451189 | 1_1:-3557716 | Msa0001840:CDS |
| GAGAAAGCTCTTAACAGCTT+AGG | 0.455731 | 1_1:-3561498 | Msa0001840:CDS |
| GAGCCCAAAGCTTGTATCCT+TGG | 0.456844 | 1_1:+3557300 | None:intergenic |
| CACAACACACTCCAGGTCAT+TGG | 0.460697 | 1_1:-3556288 | Msa0001840:CDS |
| CTACCAAGGATACAAGCTTT+GGG | 0.463104 | 1_1:-3557303 | Msa0001840:CDS |
| GGTATGCGTTTGTTTCTTGA+AGG | 0.467322 | 1_1:-3557045 | Msa0001840:CDS |
| ATCCTTGTGGGTCTTAGCGT+TGG | 0.468179 | 1_1:-3558553 | Msa0001840:CDS |
| AAATTGAAGACACAACAATA+TGG | 0.471714 | 1_1:-3556738 | Msa0001840:CDS |
| TCACTGGTGCTGTACATACA+TGG | 0.473147 | 1_1:+3556659 | None:intergenic |
| AGATGTCAGAGTTATTCAAT+AGG | 0.474106 | 1_1:-3561006 | Msa0001840:CDS |
| TCTCTTCTTAAAGGTGCTCC+TGG | 0.475934 | 1_1:-3557722 | Msa0001840:CDS |
| CTTGTGGGTCTTAGCGTTGG+AGG | 0.478506 | 1_1:-3558550 | Msa0001840:CDS |
| CGTTTCTTTGAAGCAATAAG+TGG | 0.479522 | 1_1:-3556694 | Msa0001840:CDS |
| GCTCTTAACAGCTTAGGAAA+AGG | 0.479625 | 1_1:-3561492 | Msa0001840:CDS |
| TGGGTTTGATGAGGGTTCAT+GGG | 0.483693 | 1_1:-3560933 | Msa0001840:CDS |
| AGAGGTAGATCATTGTGAAC+AGG | 0.483745 | 1_1:+3557278 | None:intergenic |
| ATAGTAGATATGTTTGTACT+TGG | 0.484397 | 1_1:+3557251 | None:intergenic |
| TCTTAAAGGTGCTCCTGGCA+GGG | 0.485486 | 1_1:-3557717 | Msa0001840:CDS |
| TGGAGGGAAAGATTTATTGT+TGG | 0.488064 | 1_1:-3558533 | Msa0001840:CDS |
| AAGTGATTCTTGAGCTCTGA+TGG | 0.490013 | 1_1:+3558481 | None:intergenic |
| ACCTTTAAGAAGAGAGGTGA+TGG | 0.490856 | 1_1:+3557730 | None:intergenic |
| TGTATTATAGAGGTAGTCAT+AGG | 0.492994 | 1_1:-3556016 | Msa0001840:three_prime_UTR |
| AACCATAATATGTGTAAAGA+GGG | 0.493169 | 1_1:-3557837 | Msa0001840:CDS |
| AACAAACGCATACCTGTGAT+TGG | 0.494939 | 1_1:+3557054 | None:intergenic |
| TGGGAGAGGAATCCCCTGCC+AGG | 0.495127 | 1_1:+3557704 | None:intergenic |
| AGTATTTAACAAAGAAAACT+TGG | 0.495296 | 1_1:+3556213 | None:intergenic |
| AACCCAAGACTTGCAAATGA+TGG | 0.495833 | 1_1:-3561680 | Msa0001840:five_prime_UTR |
| AAGTGAGCAGCCACAGTGAA+TGG | 0.496362 | 1_1:-3557802 | Msa0001840:CDS |
| AATAGGTAACAGTTGGCAAA+AGG | 0.508024 | 1_1:-3557077 | Msa0001840:intron |
| AATGTGGCATTTATTGTCAC+AGG | 0.509386 | 1_1:-3556607 | Msa0001840:CDS |
| CAAGACGTGTCTTCCACCTT+GGG | 0.511239 | 1_1:-3558505 | Msa0001840:CDS |
| GTTCACAATGATCTACCTCT+TGG | 0.514768 | 1_1:-3557275 | Msa0001840:CDS |
| TAACCATAATATGTGTAAAG+AGG | 0.516257 | 1_1:-3557838 | Msa0001840:CDS |
| AAAGGTTGATAGCATGGGAG+AGG | 0.517621 | 1_1:+3557690 | None:intergenic |
| TGAGGGTACCTTGCAAGTGC+AGG | 0.522200 | 1_1:+3560776 | None:intergenic |
| TTTATCACATTTAATGTCAA+CGG | 0.522581 | 1_1:+3561347 | None:intergenic |
| TTCACTGTGGCTGCTCACTT+GGG | 0.522829 | 1_1:+3557805 | None:intergenic |
| ACTTTATGTAAATACCGATA+AGG | 0.523405 | 1_1:-3557192 | Msa0001840:intron |
| GAAGATAAAGGTTGATAGCA+TGG | 0.525392 | 1_1:+3557684 | None:intergenic |
| CTTGAGCTCTGATGGTCCCA+AGG | 0.533591 | 1_1:+3558489 | None:intergenic |
| ATTAAATTGAGAGTGAGAAA+AGG | 0.536310 | 1_1:+3557224 | None:intergenic |
| TACAGTATTTGGGTTTGATG+AGG | 0.536814 | 1_1:-3560942 | Msa0001840:CDS |
| TAATATGTGTAAAGAGGGGA+GGG | 0.538133 | 1_1:-3557832 | Msa0001840:CDS |
| ACTTGTTTAGAAAGAAGAAG+TGG | 0.538346 | 1_1:+3560830 | None:intergenic |
| GCAAGACGTGTCTTCCACCT+TGG | 0.540220 | 1_1:-3558506 | Msa0001840:CDS |
| AATGACCTGGAGTGTGTTGT+GGG | 0.542683 | 1_1:+3556290 | None:intergenic |
| TGTTAAATCAAATTGGACAA+AGG | 0.543051 | 1_1:-3556500 | Msa0001840:CDS |
| TACTGGGGCAAAATTGGTGA+TGG | 0.545267 | 1_1:-3556260 | Msa0001840:CDS |
| CAATGACCTGGAGTGTGTTG+TGG | 0.547306 | 1_1:+3556289 | None:intergenic |
| CACTCATAATAGGTAACAGT+TGG | 0.547417 | 1_1:-3557084 | Msa0001840:intron |
| TTGGAGAACAGTTATTTAGT+GGG | 0.548703 | 1_1:-3558450 | Msa0001840:CDS |
| ACAGTATTTGGGTTTGATGA+GGG | 0.549123 | 1_1:-3560941 | Msa0001840:CDS |
| AGGTCATTGGTTGGTTACTG+GGG | 0.549188 | 1_1:-3556275 | Msa0001840:CDS |
| ACTGGTACTGGAGGTCCTGT+TGG | 0.553126 | 1_1:+3556364 | None:intergenic |
| CCAGTAACCAACCAATGACC+TGG | 0.556235 | 1_1:+3556277 | None:intergenic |
| TTGTGGGTCTTAGCGTTGGA+GGG | 0.560685 | 1_1:-3558549 | Msa0001840:CDS |
| AGCTTACTTGGGTGAAGGTG+AGG | 0.562983 | 1_1:+3561295 | None:intergenic |
| TATGACAAATCTGACATTGG+TGG | 0.565630 | 1_1:+3557335 | None:intergenic |
| TAAGGGTAAGATATGTTTGT+GGG | 0.567929 | 1_1:-3556236 | Msa0001840:CDS |
| GCAGGAGGATCCCATGAAGA+AGG | 0.570234 | 1_1:+3560794 | None:intergenic |
| TTGGGTGAAGGTGAGGATGT+CGG | 0.578922 | 1_1:+3561302 | None:intergenic |
| AATAGGAAGAGTTCAATACC+TGG | 0.578976 | 1_1:-3560989 | Msa0001840:CDS |
| CACTGGTGCTGTACATACAT+GGG | 0.579155 | 1_1:+3556660 | None:intergenic |
| ATAAGGGTAAGATATGTTTG+TGG | 0.580444 | 1_1:-3556237 | Msa0001840:CDS |
| AAGATAAAGGTTGATAGCAT+GGG | 0.580624 | 1_1:+3557685 | None:intergenic |
| CTTTGGGACTCACATCCTTG+TGG | 0.581257 | 1_1:-3558566 | Msa0001840:CDS |
| GGGATCCTCCTGCACTTGCA+AGG | 0.582684 | 1_1:-3560784 | Msa0001840:intron |
| ATCAGAGCTCAAGAATCACT+TGG | 0.583882 | 1_1:-3558479 | Msa0001840:CDS |
| CCAAAGACATCAAAGGCGGC+TGG | 0.585919 | 1_1:+3558053 | None:intergenic |
| TTCAGGCTCAAATTCTGCAA+AGG | 0.587756 | 1_1:-3561450 | Msa0001840:CDS |
| GACACGTCAGAGTTATGTAA+AGG | 0.587773 | 1_1:-3556313 | Msa0001840:CDS |
| AGAACAATAACCTCAGATGT+AGG | 0.590181 | 1_1:+3556545 | None:intergenic |
| GTTGGCAAAAGGCCAATCAC+AGG | 0.591185 | 1_1:-3557066 | Msa0001840:CDS |
| TTTCAAATACGGTGGAAGAG+AGG | 0.591544 | 1_1:+3561618 | None:intergenic |
| AGGAGCACCTTTAAGAAGAG+AGG | 0.595422 | 1_1:+3557724 | None:intergenic |
| ATAATATGTGTAAAGAGGGG+AGG | 0.601048 | 1_1:-3557833 | Msa0001840:CDS |
| GAATCAGCTTACTTGGGTGA+AGG | 0.603291 | 1_1:+3561290 | None:intergenic |
| ACACACTCCAGGTCATTGGT+TGG | 0.604138 | 1_1:-3556284 | Msa0001840:CDS |
| GTTTCTTTGAAGCAATAAGT+GGG | 0.611904 | 1_1:-3556693 | Msa0001840:CDS |
| TGTGTTTGTACTGGTACTGG+AGG | 0.618512 | 1_1:+3556355 | None:intergenic |
| AAAGGCCCACAACACACTCC+AGG | 0.619321 | 1_1:-3556295 | Msa0001840:CDS |
| TCATACTTTCTTGACTACCA+AGG | 0.625611 | 1_1:-3557317 | Msa0001840:CDS |
| TTGCGGACCAAAGACATCAA+AGG | 0.629078 | 1_1:+3558046 | None:intergenic |
| GGGTACCTTGCAAGTGCAGG+AGG | 0.630167 | 1_1:+3560779 | None:intergenic |
| ATAGGAAGAGTTCAATACCT+GGG | 0.632447 | 1_1:-3560988 | Msa0001840:CDS |
| TGTCGGATTGATAACGTGTA+CGG | 0.634359 | 1_1:+3561319 | None:intergenic |
| ATGTTTGTACTTGGACCAAG+AGG | 0.635000 | 1_1:+3557260 | None:intergenic |
| CAAAGAGAGTCCTACATCTG+AGG | 0.641177 | 1_1:-3556555 | Msa0001840:CDS |
| ACTGTATTGAAATACCCACT+TGG | 0.645812 | 1_1:+3560959 | None:intergenic |
| AAGTATGACAAATCTGACAT+TGG | 0.647643 | 1_1:+3557332 | None:intergenic |
| CCTTTAAGAAGAGAGGTGAT+GGG | 0.648998 | 1_1:+3557731 | None:intergenic |
| TACCTGGGAAAATACCAAGT+GGG | 0.650959 | 1_1:-3560973 | Msa0001840:CDS |
| ACCATAATATGTGTAAAGAG+GGG | 0.658232 | 1_1:-3557836 | Msa0001840:CDS |
| CTCCAACGCTAAGACCCACA+AGG | 0.680760 | 1_1:+3558551 | None:intergenic |
| AATATGTGTAAAGAGGGGAG+GGG | 0.680772 | 1_1:-3557831 | Msa0001840:CDS |
| GAGCTCTGATGGTCCCAAGG+TGG | 0.684288 | 1_1:+3558492 | None:intergenic |
| CGGACCAAAGACATCAAAGG+CGG | 0.704708 | 1_1:+3558049 | None:intergenic |
| AAATAAAGATCAGAAACACA+AGG | 0.714298 | 1_1:-3558407 | Msa0001840:intron |
| ATACCTGGGAAAATACCAAG+TGG | 0.723262 | 1_1:-3560974 | Msa0001840:CDS |
| ACACAGGTTAGCCATACACG+TGG | 0.725610 | 1_1:-3556797 | Msa0001840:intron |
| CTGTGAGCAGCCATTCACTG+TGG | 0.728210 | 1_1:+3557792 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAAATATGTTTTAAATA+TGG | + | chr1_1:3557429-3557448 | None:intergenic | 10.0% |
| !!! | TTTTATGACTAATTTTTTTT+TGG | - | chr1_1:3557617-3557636 | Msa0001840:intron | 10.0% |
| !! | AATCAATTAACAATATTAAT+GGG | - | chr1_1:3558319-3558338 | Msa0001840:intron | 10.0% |
| !!! | CTATATTTACATTTTTTTTA+CGG | - | chr1_1:3558352-3558371 | Msa0001840:intron | 10.0% |
| !! | TTAAATAAATTGATTGTTAT+AGG | - | chr1_1:3559023-3559042 | Msa0001840:intron | 10.0% |
| !! | ATATTGTAAATTAATCATAA+CGG | + | chr1_1:3559512-3559531 | None:intergenic | 10.0% |
| !! | ATTTAGAGATTAATTTATTT+AGG | + | chr1_1:3560077-3560096 | None:intergenic | 10.0% |
| !! | AATCTCTAAATATTATAATA+TGG | - | chr1_1:3560086-3560105 | Msa0001840:intron | 10.0% |
| !!! | TTTTTCATATGATTGAAATT+TGG | - | chr1_1:3556664-3556683 | Msa0001840:CDS | 15.0% |
| !!! | TTTTCATATGATTGAAATTT+GGG | - | chr1_1:3556665-3556684 | Msa0001840:CDS | 15.0% |
| !! | TTGAAATAAGAAAGAAAAAA+AGG | + | chr1_1:3556971-3556990 | None:intergenic | 15.0% |
| !! | TTATTTACTCAATATTAGAT+TGG | - | chr1_1:3557290-3557309 | Msa0001840:CDS | 15.0% |
| !! | ATTAATATAACTCATAAAGA+GGG | + | chr1_1:3557747-3557766 | None:intergenic | 15.0% |
| !! | TATTAATATAACTCATAAAG+AGG | + | chr1_1:3557748-3557767 | None:intergenic | 15.0% |
| !! | ATATAATATATGTAGAAGTA+TGG | - | chr1_1:3557830-3557849 | Msa0001840:CDS | 15.0% |
| !! | ATTTAGATCTATTATTATGT+GGG | - | chr1_1:3558091-3558110 | Msa0001840:intron | 15.0% |
| !!! | TAATACGTTTTTTTTTGTTA+GGG | - | chr1_1:3558193-3558212 | Msa0001840:intron | 15.0% |
| !! | GAATCAATTAACAATATTAA+TGG | - | chr1_1:3558318-3558337 | Msa0001840:intron | 15.0% |
| !!! | TAATTTGATTTTGACAATTT+TGG | - | chr1_1:3560142-3560161 | Msa0001840:intron | 15.0% |
| !! | AAAATATATAAAAAGAAGGA+AGG | - | chr1_1:3561548-3561567 | Msa0001840:five_prime_UTR | 15.0% |
| !!! | CTTTTATTTTTTGATAAAAC+AGG | - | chr1_1:3561589-3561608 | Msa0001840:five_prime_UTR | 15.0% |
| !!! | CAAGTTTTTCTTTTCAAATA+CGG | + | chr1_1:3556108-3556127 | None:intergenic | 20.0% |
| !!! | ATACTTCTTTCATTTTCATT+TGG | - | chr1_1:3556155-3556174 | Msa0001840:three_prime_UTR | 20.0% |
| !! | GTCATAAAAACCAAAAAATA+TGG | - | chr1_1:3556177-3556196 | Msa0001840:three_prime_UTR | 20.0% |
| !! | TTTATCACATTTAATGTCAA+CGG | + | chr1_1:3556368-3556387 | None:intergenic | 20.0% |
| !! | TGTTAAGTTAATACGAAATT+CGG | + | chr1_1:3556627-3556646 | None:intergenic | 20.0% |
| !! | AAGAAAGACATTAATGTAAT+GGG | + | chr1_1:3557120-3557139 | None:intergenic | 20.0% |
| !! | TTACCGTTAATTATACAATT+CGG | - | chr1_1:3557207-3557226 | Msa0001840:CDS | 20.0% |
| !!! | AAATAATTAGACAGTAGTTT+TGG | - | chr1_1:3557243-3557262 | Msa0001840:CDS | 20.0% |
| !! | GACGTTAAATCAAAATTATA+AGG | - | chr1_1:3557402-3557421 | Msa0001840:intron | 20.0% |
| !!! | GTTAGAAATTCACTTTTTTA+AGG | + | chr1_1:3557884-3557903 | None:intergenic | 20.0% |
| !!! | TCACTAATATTTTTTTCAAG+TGG | + | chr1_1:3557914-3557933 | None:intergenic | 20.0% |
| !! | CATTGTTATAAACAAAAATG+AGG | + | chr1_1:3557950-3557969 | None:intergenic | 20.0% |
| !! | CACATAATAATAGATCTAAA+TGG | + | chr1_1:3558092-3558111 | None:intergenic | 20.0% |
| !! | CATTTAGATCTATTATTATG+TGG | - | chr1_1:3558090-3558109 | Msa0001840:intron | 20.0% |
| !! | AAAAAAACGTATTACTATAG+TGG | + | chr1_1:3558187-3558206 | None:intergenic | 20.0% |
| !!! | GTAATACGTTTTTTTTTGTT+AGG | - | chr1_1:3558192-3558211 | Msa0001840:intron | 20.0% |
| !!! | AATACGTTTTTTTTTGTTAG+GGG | - | chr1_1:3558194-3558213 | Msa0001840:intron | 20.0% |
| !!! | AAATTTGTTGCAGAATATAT+TGG | + | chr1_1:3558688-3558707 | None:intergenic | 20.0% |
| !! | ATATGCAAAAAATTCACTTT+AGG | + | chr1_1:3558737-3558756 | None:intergenic | 20.0% |
| !! | ATAAATTGATTGTTATAGGA+AGG | - | chr1_1:3559027-3559046 | Msa0001840:intron | 20.0% |
| !! | TCTTTCAAGAACATAAATTA+AGG | + | chr1_1:3559098-3559117 | None:intergenic | 20.0% |
| !!! | TGTTTCTGATCTTTATTTTT+GGG | + | chr1_1:3559303-3559322 | None:intergenic | 20.0% |
| !!! | TTTTGAACGTGATTTAAAAA+TGG | - | chr1_1:3559452-3559471 | Msa0001840:intron | 20.0% |
| !! | ACAAACATTTGATTCAAAAT+TGG | - | chr1_1:3560109-3560128 | Msa0001840:intron | 20.0% |
| !! | CAAACATTTGATTCAAAATT+GGG | - | chr1_1:3560110-3560129 | Msa0001840:intron | 20.0% |
| !! | TAACCATAAACATTATGAAT+AGG | + | chr1_1:3560284-3560303 | None:intergenic | 20.0% |
| !! | CTATATAATACTATATGAAG+AGG | + | chr1_1:3560568-3560587 | None:intergenic | 20.0% |
| !!! | TAGTTAGTAGTATTATTTTC+TGG | - | chr1_1:3560726-3560745 | Msa0001840:intron | 20.0% |
| !!! | ACATTACTATCATGTAATTT+TGG | - | chr1_1:3560770-3560789 | Msa0001840:intron | 20.0% |
| !! | TATGATTCAATTGTCATAAT+TGG | - | chr1_1:3560797-3560816 | Msa0001840:CDS | 20.0% |
| !!! | CTTTTGTTGTTAAATCAAAT+TGG | - | chr1_1:3561205-3561224 | Msa0001840:intron | 20.0% |
| !!! | AAAGTACTGTTGATTTTTTT+TGG | + | chr1_1:3561311-3561330 | None:intergenic | 20.0% |
| !!! | AAAAAAATCAACAGTACTTT+TGG | - | chr1_1:3561311-3561330 | Msa0001840:CDS | 20.0% |
| !! | ACAAAAAATGTTGAAATTTG+TGG | - | chr1_1:3561377-3561396 | Msa0001840:CDS | 20.0% |
| !! | AGTATTTAACAAAGAAAACT+TGG | + | chr1_1:3561502-3561521 | None:intergenic | 20.0% |
| !!! | TATTTGGATTTTATGTTCAT+AGG | + | chr1_1:3561527-3561546 | None:intergenic | 20.0% |
| !!! | CTATATATATCCAATTTGTT+AGG | + | chr1_1:3561652-3561671 | None:intergenic | 20.0% |
| !! | CTAACAAATTGGATATATAT+AGG | - | chr1_1:3561650-3561669 | Msa0001840:five_prime_UTR | 20.0% |
| ! | AAACCAAAAAATATGGATGA+AGG | - | chr1_1:3556184-3556203 | Msa0001840:three_prime_UTR | 25.0% |
| ! | GTTGACATTAAATGTGATAA+AGG | - | chr1_1:3556367-3556386 | Msa0001840:CDS | 25.0% |
| ! | TTTATTAGATTTGACTCAAG+TGG | - | chr1_1:3556491-3556510 | Msa0001840:CDS | 25.0% |
| ! | GGTATTTCAATACAGTATTT+GGG | - | chr1_1:3556760-3556779 | Msa0001840:CDS | 25.0% |
| ! | AAAAAAGGAAGAAATCATGA+GGG | + | chr1_1:3556956-3556975 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAAGAAATCATG+AGG | + | chr1_1:3556957-3556976 | None:intergenic | 25.0% |
| ! | ATTGATTGGTACATAGTATT+TGG | + | chr1_1:3557076-3557095 | None:intergenic | 25.0% |
| ! | ATATGATTTCCATGATTGAT+TGG | + | chr1_1:3557090-3557109 | None:intergenic | 25.0% |
| ! | CAAGAAAGACATTAATGTAA+TGG | + | chr1_1:3557121-3557140 | None:intergenic | 25.0% |
| ! | CATTACATTAATGTCTTTCT+TGG | - | chr1_1:3557119-3557138 | Msa0001840:intron | 25.0% |
| ! | TACCGTTAATTATACAATTC+GGG | - | chr1_1:3557208-3557227 | Msa0001840:CDS | 25.0% |
| ! | TACCCGAATTGTATAATTAA+CGG | + | chr1_1:3557213-3557232 | None:intergenic | 25.0% |
| ! | TCTATACAATTCAAATGTAG+TGG | + | chr1_1:3557338-3557357 | None:intergenic | 25.0% |
| !!! | ATTTTTTTCAAGTGGTATAG+TGG | + | chr1_1:3557906-3557925 | None:intergenic | 25.0% |
| ! | AGTCAACTTAATTACATCAA+TGG | - | chr1_1:3558047-3558066 | Msa0001840:CDS | 25.0% |
| ! | TAATTACATCAATGGTTTCA+AGG | - | chr1_1:3558055-3558074 | Msa0001840:CDS | 25.0% |
| ! | TTAGAAAAATAGACTACTAG+TGG | + | chr1_1:3558247-3558266 | None:intergenic | 25.0% |
| ! | TAATAAGTACAATTGCATCT+AGG | - | chr1_1:3558818-3558837 | Msa0001840:intron | 25.0% |
| !!! | GTGTTTCTGATCTTTATTTT+TGG | + | chr1_1:3559304-3559323 | None:intergenic | 25.0% |
| ! | AAATAAAGATCAGAAACACA+AGG | - | chr1_1:3559305-3559324 | Msa0001840:intron | 25.0% |
| ! | ACCCATAAAAACAACTAATA+AGG | - | chr1_1:3559567-3559586 | Msa0001840:intron | 25.0% |
| !!! | CCCTTATTAGTTGTTTTTAT+GGG | + | chr1_1:3559571-3559590 | None:intergenic | 25.0% |
| ! | CCCATAAAAACAACTAATAA+GGG | - | chr1_1:3559568-3559587 | Msa0001840:intron | 25.0% |
| ! | ATTGAGATCAAGTCAAATTA+TGG | + | chr1_1:3559606-3559625 | None:intergenic | 25.0% |
| ! | AATTCAATGTTTGAAGATGT+AGG | + | chr1_1:3559845-3559864 | None:intergenic | 25.0% |
| !! | TCTTCAAACATTGAATTTTC+AGG | - | chr1_1:3559848-3559867 | Msa0001840:intron | 25.0% |
| !! | CTTCAAACATTGAATTTTCA+GGG | - | chr1_1:3559849-3559868 | Msa0001840:intron | 25.0% |
| ! | TAACCATAATATGTGTAAAG+AGG | - | chr1_1:3559874-3559893 | Msa0001840:intron | 25.0% |
| ! | AACCATAATATGTGTAAAGA+GGG | - | chr1_1:3559875-3559894 | Msa0001840:intron | 25.0% |
| ! | TAAACTTACATCGAAGATAA+AGG | + | chr1_1:3560043-3560062 | None:intergenic | 25.0% |
| ! | ATAGTAGATATGTTTGTACT+TGG | + | chr1_1:3560464-3560483 | None:intergenic | 25.0% |
| ! | ATTAAATTGAGAGTGAGAAA+AGG | + | chr1_1:3560491-3560510 | None:intergenic | 25.0% |
| !! | TTTTCTCACTCTCAATTTAA+TGG | - | chr1_1:3560490-3560509 | Msa0001840:intron | 25.0% |
| ! | TTTCTCACTCTCAATTTAAT+GGG | - | chr1_1:3560491-3560510 | Msa0001840:intron | 25.0% |
| ! | TCGGTATTTACATAAAGTTT+GGG | + | chr1_1:3560518-3560537 | None:intergenic | 25.0% |
| ! | ATCGGTATTTACATAAAGTT+TGG | + | chr1_1:3560519-3560538 | None:intergenic | 25.0% |
| ! | ACTTTATGTAAATACCGATA+AGG | - | chr1_1:3560520-3560539 | Msa0001840:intron | 25.0% |
| ! | GAAAATCAAACATACCTTAT+CGG | + | chr1_1:3560537-3560556 | None:intergenic | 25.0% |
| ! | ATAATACTATATGAAGAGGA+AGG | + | chr1_1:3560564-3560583 | None:intergenic | 25.0% |
| ! | TATGAGTGAATAAGAAACTT+AGG | + | chr1_1:3560616-3560635 | None:intergenic | 25.0% |
| ! | GTTTCTTATTCACTCATAAT+AGG | - | chr1_1:3560618-3560637 | Msa0001840:intron | 25.0% |
| !! | TTACTATCATGTAATTTTGG+TGG | - | chr1_1:3560773-3560792 | Msa0001840:intron | 25.0% |
| ! | AAATTGAAGACACAACAATA+TGG | - | chr1_1:3560974-3560993 | Msa0001840:CDS | 25.0% |
| ! | TGTTAAATCAAATTGGACAA+AGG | - | chr1_1:3561212-3561231 | Msa0001840:intron | 25.0% |
| ! | GTTAAATCAAATTGGACAAA+GGG | - | chr1_1:3561213-3561232 | Msa0001840:intron | 25.0% |
| !!! | AACATTTTTTGTGTTTGTAC+TGG | + | chr1_1:3561369-3561388 | None:intergenic | 25.0% |
| ! | TACTGTATATCCTAACAAAT+TGG | - | chr1_1:3561639-3561658 | Msa0001840:five_prime_UTR | 25.0% |
| ! | TATCTCTAGTTGTATTATAG+AGG | - | chr1_1:3561686-3561705 | Msa0001840:five_prime_UTR | 25.0% |
| ! | GTTTTTCTTTTCAAATACGG+TGG | + | chr1_1:3556105-3556124 | None:intergenic | 30.0% |
| !!! | ATGCCTTCATCCATATTTTT+TGG | + | chr1_1:3556190-3556209 | None:intergenic | 30.0% |
| ATTAGTGAATCAGCTTACTT+GGG | + | chr1_1:3556431-3556450 | None:intergenic | 30.0% | |
| AATTAGTGAATCAGCTTACT+TGG | + | chr1_1:3556432-3556451 | None:intergenic | 30.0% | |
| AGATGTCAGAGTTATTCAAT+AGG | - | chr1_1:3556706-3556725 | Msa0001840:CDS | 30.0% | |
| GGGTATTTCAATACAGTATT+TGG | - | chr1_1:3556759-3556778 | Msa0001840:CDS | 30.0% | |
| !! | ACAAAGTGTTTAGGTATTGA+TGG | - | chr1_1:3556819-3556838 | Msa0001840:intron | 30.0% |
| TTAGAAAGAAGAAGTGGATA+TGG | + | chr1_1:3556879-3556898 | None:intergenic | 30.0% | |
| ACTTGTTTAGAAAGAAGAAG+TGG | + | chr1_1:3556885-3556904 | None:intergenic | 30.0% | |
| ! | TTTTCTATCCCAAAGTAAAC+TGG | - | chr1_1:3557038-3557057 | Msa0001840:CDS | 30.0% |
| TGGAAAAACCAGTTTACTTT+GGG | + | chr1_1:3557049-3557068 | None:intergenic | 30.0% | |
| TACTATGTACCAATCAATCA+TGG | - | chr1_1:3557078-3557097 | Msa0001840:intron | 30.0% | |
| !! | CTTTCTTGGTAATTTTCCTA+CGG | - | chr1_1:3557133-3557152 | Msa0001840:intron | 30.0% |
| ATTGGATCAAATCTACAACA+TGG | - | chr1_1:3557308-3557327 | Msa0001840:CDS | 30.0% | |
| TCATATGATCAAGAGAGATA+TGG | + | chr1_1:3557503-3557522 | None:intergenic | 30.0% | |
| TTAGGTAACATGGAAATAAG+AGG | - | chr1_1:3557577-3557596 | Msa0001840:intron | 30.0% | |
| GAAATAAGAGGTTATCTTGT+TGG | - | chr1_1:3557589-3557608 | Msa0001840:intron | 30.0% | |
| ACAAAAATGTAGTCCAAGTA+TGG | + | chr1_1:3557685-3557704 | None:intergenic | 30.0% | |
| GAGATTAATCACTAGGAATT+TGG | + | chr1_1:3557781-3557800 | None:intergenic | 30.0% | |
| TACCAGCTAAGTTAAGTTAA+CGG | + | chr1_1:3557803-3557822 | None:intergenic | 30.0% | |
| TTACTATAGTGGCTAACAAA+AGG | + | chr1_1:3558176-3558195 | None:intergenic | 30.0% | |
| GGAGAAAGTTATGATTACAA+TGG | - | chr1_1:3558373-3558392 | Msa0001840:intron | 30.0% | |
| ! | TTGAACTGTTCTAAGTGATA+AGG | - | chr1_1:3558561-3558580 | Msa0001840:CDS | 30.0% |
| ! | TGAACTGTTCTAAGTGATAA+GGG | - | chr1_1:3558562-3558581 | Msa0001840:CDS | 30.0% |
| AATTGATTGTTATAGGAAGG+AGG | - | chr1_1:3559030-3559049 | Msa0001840:intron | 30.0% | |
| ATTGATTGTTATAGGAAGGA+GGG | - | chr1_1:3559031-3559050 | Msa0001840:intron | 30.0% | |
| TTGGAGAACAGTTATTTAGT+GGG | - | chr1_1:3559262-3559281 | Msa0001840:intron | 30.0% | |
| !!! | TCTGATCTTTATTTTTGGGA+AGG | + | chr1_1:3559299-3559318 | None:intergenic | 30.0% |
| !!! | GCCCTTATTAGTTGTTTTTA+TGG | + | chr1_1:3559572-3559591 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTTAGCATGTCAA+TGG | + | chr1_1:3559634-3559653 | None:intergenic | 30.0% |
| TTGACATGCTAAAAAAACAC+AGG | - | chr1_1:3559634-3559653 | Msa0001840:intron | 30.0% | |
| ! | ACATACATCTTTTGCACAAA+CGG | + | chr1_1:3559717-3559736 | None:intergenic | 30.0% |
| !!! | TCTGTCATTTTCTTTCGAAA+TGG | - | chr1_1:3559772-3559791 | Msa0001840:intron | 30.0% |
| ACCATAATATGTGTAAAGAG+GGG | - | chr1_1:3559876-3559895 | Msa0001840:intron | 30.0% | |
| AAGCTAAAATCAATTGCATC+TGG | + | chr1_1:3559957-3559976 | None:intergenic | 30.0% | |
| !! | AAGATAAAGGTTGATAGCAT+GGG | + | chr1_1:3560030-3560049 | None:intergenic | 30.0% |
| ACAAGGTTTAATAAAGCCTT+TGG | - | chr1_1:3560253-3560272 | Msa0001840:intron | 30.0% | |
| CAAGGTTTAATAAAGCCTTT+GGG | - | chr1_1:3560254-3560273 | Msa0001840:intron | 30.0% | |
| CCATAAACATTATGAATAGG+AGG | + | chr1_1:3560281-3560300 | None:intergenic | 30.0% | |
| CCTCCTATTCATAATGTTTA+TGG | - | chr1_1:3560278-3560297 | Msa0001840:intron | 30.0% | |
| AAGTATGACAAATCTGACAT+TGG | + | chr1_1:3560383-3560402 | None:intergenic | 30.0% | |
| !! | CTTAGCTAACAAGTCATTTT+TGG | + | chr1_1:3560873-3560892 | None:intergenic | 30.0% |
| !! | CAAAAATGACTTGTTAGCTA+AGG | - | chr1_1:3560871-3560890 | Msa0001840:CDS | 30.0% |
| GTTAGCTAAGGTAATTTACA+AGG | - | chr1_1:3560883-3560902 | Msa0001840:CDS | 30.0% | |
| !! | ATTTTGTTGCTAAGCATTGT+TGG | + | chr1_1:3560958-3560977 | None:intergenic | 30.0% |
| !! | GTTTCTTTGAAGCAATAAGT+GGG | - | chr1_1:3561019-3561038 | Msa0001840:intron | 30.0% |
| ! | CATTTAGGATTGTATTTCAC+TGG | + | chr1_1:3561072-3561091 | None:intergenic | 30.0% |
| CAGTGAAATACAATCCTAAA+TGG | - | chr1_1:3561070-3561089 | Msa0001840:intron | 30.0% | |
| !!! | TTTTTTTCAGTGCTCCATTT+AGG | + | chr1_1:3561087-3561106 | None:intergenic | 30.0% |
| TGAGAAAATTCCAGATTTCT+GGG | + | chr1_1:3561253-3561272 | None:intergenic | 30.0% | |
| ATAAGGGTAAGATATGTTTG+TGG | - | chr1_1:3561475-3561494 | Msa0001840:CDS | 30.0% | |
| TAAGGGTAAGATATGTTTGT+GGG | - | chr1_1:3561476-3561495 | Msa0001840:CDS | 30.0% | |
| TGTATTATAGAGGTAGTCAT+AGG | - | chr1_1:3561696-3561715 | Msa0001840:five_prime_UTR | 30.0% | |
| ! | TCTTTTATGGATCCAAAACC+TGG | + | chr1_1:3556340-3556359 | None:intergenic | 35.0% |
| GAGGATAGTAAAGTCTATCA+TGG | + | chr1_1:3556600-3556619 | None:intergenic | 35.0% | |
| TAATACGAAATTCGGTTGAG+AGG | + | chr1_1:3556619-3556638 | None:intergenic | 35.0% | |
| !! | TGATTGAAATTTGGGTTGTG+TGG | - | chr1_1:3556673-3556692 | Msa0001840:CDS | 35.0% |
| AATAGGAAGAGTTCAATACC+TGG | - | chr1_1:3556723-3556742 | Msa0001840:CDS | 35.0% | |
| ATAGGAAGAGTTCAATACCT+GGG | - | chr1_1:3556724-3556743 | Msa0001840:CDS | 35.0% | |
| ACTGTATTGAAATACCCACT+TGG | + | chr1_1:3556756-3556775 | None:intergenic | 35.0% | |
| ! | TACAGTATTTGGGTTTGATG+AGG | - | chr1_1:3556770-3556789 | Msa0001840:CDS | 35.0% |
| ! | ACAGTATTTGGGTTTGATGA+GGG | - | chr1_1:3556771-3556790 | Msa0001840:CDS | 35.0% |
| GTGGAAAAACCAGTTTACTT+TGG | + | chr1_1:3557050-3557069 | None:intergenic | 35.0% | |
| ATGATCAAGAGAGATATGGT+TGG | + | chr1_1:3557499-3557518 | None:intergenic | 35.0% | |
| TATGTTAGCATCACCATACT+TGG | - | chr1_1:3557669-3557688 | Msa0001840:intron | 35.0% | |
| GTTAACGGAGATTAATCACT+AGG | + | chr1_1:3557788-3557807 | None:intergenic | 35.0% | |
| AGCCAGAGAATTTGATTGAA+CGG | - | chr1_1:3558114-3558133 | Msa0001840:intron | 35.0% | |
| TTCAAATATACCCACTTGCA+AGG | - | chr1_1:3558781-3558800 | Msa0001840:intron | 35.0% | |
| ! | AGTTTGAGTTTGTAGTCTAG+AGG | - | chr1_1:3558944-3558963 | Msa0001840:intron | 35.0% |
| TATAGGAAGGAGGGATTATT+TGG | - | chr1_1:3559040-3559059 | Msa0001840:intron | 35.0% | |
| TTAAGGAACTTCGTCTGTAT+AGG | + | chr1_1:3559081-3559100 | None:intergenic | 35.0% | |
| ATCAGATTCATCGAGAACTT+TGG | - | chr1_1:3559129-3559148 | Msa0001840:intron | 35.0% | |
| TCAGATTCATCGAGAACTTT+GGG | - | chr1_1:3559130-3559149 | Msa0001840:intron | 35.0% | |
| TGGAGGGAAAGATTTATTGT+TGG | - | chr1_1:3559179-3559198 | Msa0001840:intron | 35.0% | |
| AAGAATCACTTGGATGATCT+TGG | - | chr1_1:3559243-3559262 | Msa0001840:intron | 35.0% | |
| CTTGGAGAACAGTTATTTAG+TGG | - | chr1_1:3559261-3559280 | Msa0001840:intron | 35.0% | |
| !! | AGTGTTGCTTGCATAACTTT+AGG | + | chr1_1:3559358-3559377 | None:intergenic | 35.0% |
| TCCCCTCTTTACACATATTA+TGG | + | chr1_1:3559880-3559899 | None:intergenic | 35.0% | |
| ATAATATGTGTAAAGAGGGG+AGG | - | chr1_1:3559879-3559898 | Msa0001840:intron | 35.0% | |
| TAATATGTGTAAAGAGGGGA+GGG | - | chr1_1:3559880-3559899 | Msa0001840:intron | 35.0% | |
| !! | TCAATTGCATCTGGTTTGTT+AGG | + | chr1_1:3559948-3559967 | None:intergenic | 35.0% |
| !! | GAAGATAAAGGTTGATAGCA+TGG | + | chr1_1:3560031-3560050 | None:intergenic | 35.0% |
| TTGGTTGTTGAACTAATGAG+AGG | - | chr1_1:3560326-3560345 | Msa0001840:intron | 35.0% | |
| TATGACAAATCTGACATTGG+TGG | + | chr1_1:3560380-3560399 | None:intergenic | 35.0% | |
| TCATACTTTCTTGACTACCA+AGG | - | chr1_1:3560395-3560414 | Msa0001840:intron | 35.0% | |
| CACTCATAATAGGTAACAGT+TGG | - | chr1_1:3560628-3560647 | Msa0001840:intron | 35.0% | |
| AATAGGTAACAGTTGGCAAA+AGG | - | chr1_1:3560635-3560654 | Msa0001840:intron | 35.0% | |
| TTGAAGGAATGAAATGCAAC+AGG | - | chr1_1:3560683-3560702 | Msa0001840:intron | 35.0% | |
| TTATTCCAACTGCTACGATT+AGG | - | chr1_1:3560827-3560846 | Msa0001840:CDS | 35.0% | |
| ! | TTTGGTTCCATATGCTAACA+AGG | + | chr1_1:3560855-3560874 | None:intergenic | 35.0% |
| TAATAGATGTTCCACGTGTA+TGG | + | chr1_1:3560929-3560948 | None:intergenic | 35.0% | |
| !! | CGTTTCTTTGAAGCAATAAG+TGG | - | chr1_1:3561018-3561037 | Msa0001840:intron | 35.0% |
| !! | ATGGAGCACTGAAAAAAATG+TGG | - | chr1_1:3561089-3561108 | Msa0001840:intron | 35.0% |
| AATGTGGCATTTATTGTCAC+AGG | - | chr1_1:3561105-3561124 | Msa0001840:intron | 35.0% | |
| AGAACAATAACCTCAGATGT+AGG | + | chr1_1:3561170-3561189 | None:intergenic | 35.0% | |
| ! | TCTGAGGTTATTGTTCTCTA+AGG | - | chr1_1:3561173-3561192 | Msa0001840:intron | 35.0% |
| CTGAGAAAATTCCAGATTTC+TGG | + | chr1_1:3561254-3561273 | None:intergenic | 35.0% | |
| GCAATAAGCACATCAATATC+TGG | - | chr1_1:3561273-3561292 | Msa0001840:intron | 35.0% | |
| ! | GATTCTAGTGTTTTTCCAAC+AGG | - | chr1_1:3561333-3561352 | Msa0001840:CDS | 35.0% |
| !! | TTTTGTGTTTGTACTGGTAC+TGG | + | chr1_1:3561363-3561382 | None:intergenic | 35.0% |
| !! | GCAAAATTGGTGATGGATAA+GGG | - | chr1_1:3561459-3561478 | Msa0001840:CDS | 35.0% |
| AACCCAAGACTTGCAAATGA+TGG | - | chr1_1:3556032-3556051 | Msa0001840:three_prime_UTR | 40.0% | |
| TGCCATCATTTGCAAGTCTT+GGG | + | chr1_1:3556037-3556056 | None:intergenic | 40.0% | |
| ATGCCATCATTTGCAAGTCT+TGG | + | chr1_1:3556038-3556057 | None:intergenic | 40.0% | |
| TTTCAAATACGGTGGAAGAG+AGG | + | chr1_1:3556097-3556116 | None:intergenic | 40.0% | |
| GAGAAAGCTCTTAACAGCTT+AGG | - | chr1_1:3556214-3556233 | Msa0001840:CDS | 40.0% | |
| GCTCTTAACAGCTTAGGAAA+AGG | - | chr1_1:3556220-3556239 | Msa0001840:CDS | 40.0% | |
| ! | TCGACTTGACATCAGATTTC+AGG | - | chr1_1:3556245-3556264 | Msa0001840:CDS | 40.0% |
| TTCAGGCTCAAATTCTGCAA+AGG | - | chr1_1:3556262-3556281 | Msa0001840:CDS | 40.0% | |
| ! | GTCAACGGAGACATCTTTTA+TGG | + | chr1_1:3556353-3556372 | None:intergenic | 40.0% |
| !! | TGTCGGATTGATAACGTGTA+CGG | + | chr1_1:3556396-3556415 | None:intergenic | 40.0% |
| CTCAAGTGGTTAATGAAAGC+AGG | - | chr1_1:3556505-3556524 | Msa0001840:CDS | 40.0% | |
| ATACCTGGGAAAATACCAAG+TGG | - | chr1_1:3556738-3556757 | Msa0001840:CDS | 40.0% | |
| TACCTGGGAAAATACCAAGT+GGG | - | chr1_1:3556739-3556758 | Msa0001840:CDS | 40.0% | |
| ! | GCAGCTAACACAAAGTGTTT+AGG | - | chr1_1:3556810-3556829 | Msa0001840:intron | 40.0% |
| TTCAAGCTGTTCCTTCTTCA+TGG | - | chr1_1:3556907-3556926 | Msa0001840:intron | 40.0% | |
| TCAAGCTGTTCCTTCTTCAT+GGG | - | chr1_1:3556908-3556927 | Msa0001840:intron | 40.0% | |
| GGTACATAGTATTTGGTACG+TGG | + | chr1_1:3557069-3557088 | None:intergenic | 40.0% | |
| AACCACAACCAGTAAAAGTG+GGG | + | chr1_1:3557167-3557186 | None:intergenic | 40.0% | |
| CAACCACAACCAGTAAAAGT+GGG | + | chr1_1:3557168-3557187 | None:intergenic | 40.0% | |
| TCAACCACAACCAGTAAAAG+TGG | + | chr1_1:3557169-3557188 | None:intergenic | 40.0% | |
| ACATACAATCCAAATTCCCG+CGG | - | chr1_1:3557525-3557544 | Msa0001840:intron | 40.0% | |
| TGTAGGTGAAACCATGTTGA+TGG | - | chr1_1:3557553-3557572 | Msa0001840:intron | 40.0% | |
| GTAGGTGAAACCATGTTGAT+GGG | - | chr1_1:3557554-3557573 | Msa0001840:intron | 40.0% | |
| !! | TGAAACCATGTTGATGGGTT+AGG | - | chr1_1:3557559-3557578 | Msa0001840:intron | 40.0% |
| TGTTACCTAACCCATCAACA+TGG | + | chr1_1:3557567-3557586 | None:intergenic | 40.0% | |
| !! | TGTTGATGGGTTAGGTAACA+TGG | - | chr1_1:3557567-3557586 | Msa0001840:intron | 40.0% |
| CTCCGTTAACTTAACTTAGC+TGG | - | chr1_1:3557798-3557817 | Msa0001840:CDS | 40.0% | |
| CTCCGTTCAATCAAATTCTC+TGG | + | chr1_1:3558119-3558138 | None:intergenic | 40.0% | |
| AAATATACCCACTTGCAAGG+AGG | - | chr1_1:3558784-3558803 | Msa0001840:intron | 40.0% | |
| ! | AAGTGATTCTTGAGCTCTGA+TGG | + | chr1_1:3559234-3559253 | None:intergenic | 40.0% |
| ATCAGAGCTCAAGAATCACT+TGG | - | chr1_1:3559233-3559252 | Msa0001840:intron | 40.0% | |
| CCATTGAACGCAACAATTTG+CGG | + | chr1_1:3559686-3559705 | None:intergenic | 40.0% | |
| AATATGTGTAAAGAGGGGAG+GGG | - | chr1_1:3559881-3559900 | Msa0001840:intron | 40.0% | |
| ! | CCTTTAAGAAGAGAGGTGAT+GGG | + | chr1_1:3559984-3560003 | None:intergenic | 40.0% |
| ! | ACCTTTAAGAAGAGAGGTGA+TGG | + | chr1_1:3559985-3560004 | None:intergenic | 40.0% |
| GCTTGGAAGTCAATGAAGTA+TGG | + | chr1_1:3560226-3560245 | None:intergenic | 40.0% | |
| TAAACCTTGTGTTGTGTGCT+TGG | + | chr1_1:3560243-3560262 | None:intergenic | 40.0% | |
| TTATGAATAGGAGGACCCAA+AGG | + | chr1_1:3560272-3560291 | None:intergenic | 40.0% | |
| TTGAGCACGTTCTCAATTCT+TGG | - | chr1_1:3560307-3560326 | Msa0001840:intron | 40.0% | |
| ACTACCAAGGATACAAGCTT+TGG | - | chr1_1:3560408-3560427 | Msa0001840:intron | 40.0% | |
| CTACCAAGGATACAAGCTTT+GGG | - | chr1_1:3560409-3560428 | Msa0001840:intron | 40.0% | |
| AGAGGTAGATCATTGTGAAC+AGG | + | chr1_1:3560437-3560456 | None:intergenic | 40.0% | |
| GTTCACAATGATCTACCTCT+TGG | - | chr1_1:3560437-3560456 | Msa0001840:intron | 40.0% | |
| ATGTTTGTACTTGGACCAAG+AGG | + | chr1_1:3560455-3560474 | None:intergenic | 40.0% | |
| AACAAACGCATACCTGTGAT+TGG | + | chr1_1:3560661-3560680 | None:intergenic | 40.0% | |
| ! | GGTATGCGTTTGTTTCTTGA+AGG | - | chr1_1:3560667-3560686 | Msa0001840:intron | 40.0% |
| !! | TTAGGAGCCTTGTTAGCATA+TGG | - | chr1_1:3560845-3560864 | Msa0001840:CDS | 40.0% |
| AATTGGACAAAGGGTTCTTC+TGG | - | chr1_1:3561222-3561241 | Msa0001840:intron | 40.0% | |
| GACACGTCAGAGTTATGTAA+AGG | - | chr1_1:3561399-3561418 | Msa0001840:CDS | 40.0% | |
| !! | GGCAAAATTGGTGATGGATA+AGG | - | chr1_1:3561458-3561477 | Msa0001840:CDS | 40.0% |
| AAAAGAGAGCTTTCTGTGCC+AGG | - | chr1_1:3556319-3556338 | Msa0001840:CDS | 45.0% | |
| GAATCAGCTTACTTGGGTGA+AGG | + | chr1_1:3556425-3556444 | None:intergenic | 45.0% | |
| ! | TACCCACTTGGTATTTTCCC+AGG | + | chr1_1:3556744-3556763 | None:intergenic | 45.0% |
| TTGGGTTTGATGAGGGTTCA+TGG | - | chr1_1:3556778-3556797 | Msa0001840:CDS | 45.0% | |
| TGGGTTTGATGAGGGTTCAT+GGG | - | chr1_1:3556779-3556798 | Msa0001840:CDS | 45.0% | |
| TTACGTGCACTCATGCATCA+AGG | - | chr1_1:3557365-3557384 | Msa0001840:intron | 45.0% | |
| TACGTGCACTCATGCATCAA+GGG | - | chr1_1:3557366-3557385 | Msa0001840:intron | 45.0% | |
| TACATGTTACCGCGGGAATT+TGG | + | chr1_1:3557537-3557556 | None:intergenic | 45.0% | |
| AAATTCCCGCGGTAACATGT+AGG | - | chr1_1:3557536-3557555 | Msa0001840:intron | 45.0% | |
| TTTCACCTACATGTTACCGC+GGG | + | chr1_1:3557544-3557563 | None:intergenic | 45.0% | |
| GTTTCACCTACATGTTACCG+CGG | + | chr1_1:3557545-3557564 | None:intergenic | 45.0% | |
| ! | TTTGGGACTCACATCCTTGT+GGG | - | chr1_1:3559147-3559166 | Msa0001840:intron | 45.0% |
| TTGCGGACCAAAGACATCAA+AGG | + | chr1_1:3559669-3559688 | None:intergenic | 45.0% | |
| CCGCAAATTGTTGCGTTCAA+TGG | - | chr1_1:3559683-3559702 | Msa0001840:intron | 45.0% | |
| TTCTTTCGAAATGGTGCTCG+TGG | - | chr1_1:3559781-3559800 | Msa0001840:intron | 45.0% | |
| CCCATCACCTCTCTTCTTAA+AGG | - | chr1_1:3559981-3560000 | Msa0001840:intron | 45.0% | |
| !! | AGGAGCACCTTTAAGAAGAG+AGG | + | chr1_1:3559991-3560010 | None:intergenic | 45.0% |
| !! | TCTCTTCTTAAAGGTGCTCC+TGG | - | chr1_1:3559990-3560009 | Msa0001840:intron | 45.0% |
| !! | AAAGGTTGATAGCATGGGAG+AGG | + | chr1_1:3560025-3560044 | None:intergenic | 45.0% |
| ACTTCCAAGCACACAACACA+AGG | - | chr1_1:3560236-3560255 | Msa0001840:intron | 45.0% | |
| TACAAGGATGTTGCTGACAC+AGG | - | chr1_1:3560899-3560918 | Msa0001840:CDS | 45.0% | |
| !! | CACTGGTGCTGTACATACAT+GGG | + | chr1_1:3561055-3561074 | None:intergenic | 45.0% |
| !! | TCACTGGTGCTGTACATACA+TGG | + | chr1_1:3561056-3561075 | None:intergenic | 45.0% |
| CAAAGAGAGTCCTACATCTG+AGG | - | chr1_1:3561157-3561176 | Msa0001840:intron | 45.0% | |
| TCTGGATTGTCCCAGAAATC+TGG | - | chr1_1:3561240-3561259 | Msa0001840:intron | 45.0% | |
| ! | TGTGTTTGTACTGGTACTGG+AGG | + | chr1_1:3561360-3561379 | None:intergenic | 45.0% |
| AATGACCTGGAGTGTGTTGT+GGG | + | chr1_1:3561425-3561444 | None:intergenic | 45.0% | |
| ! | CAGGTCATTGGTTGGTTACT+GGG | - | chr1_1:3561436-3561455 | Msa0001840:CDS | 45.0% |
| ! | AGGTCATTGGTTGGTTACTG+GGG | - | chr1_1:3561437-3561456 | Msa0001840:CDS | 45.0% |
| GTTGGTTACTGGGGCAAAAT+TGG | - | chr1_1:3561446-3561465 | Msa0001840:CDS | 45.0% | |
| TACTGGGGCAAAATTGGTGA+TGG | - | chr1_1:3561452-3561471 | Msa0001840:CDS | 45.0% | |
| !! | ATATTATTAAATTACATATT+TGG | + | chr1_1:3557005-3557024 | None:intergenic | 5.0% |
| !!! | TATTTTTTACTATTTTAAAT+AGG | - | chr1_1:3557453-3557472 | Msa0001840:intron | 5.0% |
| !!! | ATTTTTTACTATTTTAAATA+GGG | - | chr1_1:3557454-3557473 | Msa0001840:intron | 5.0% |
| !!! | CTTTTTATATATTTTTTATT+TGG | + | chr1_1:3561543-3561562 | None:intergenic | 5.0% |
| !! | ATAAAAAATATATAAAAAGA+AGG | - | chr1_1:3561544-3561563 | Msa0001840:five_prime_UTR | 5.0% |
| ! | GAGCTTTCTGTGCCAGGTTT+TGG | - | chr1_1:3556325-3556344 | Msa0001840:CDS | 50.0% |
| TTGGGTGAAGGTGAGGATGT+CGG | + | chr1_1:3556413-3556432 | None:intergenic | 50.0% | |
| AGCTTACTTGGGTGAAGGTG+AGG | + | chr1_1:3556420-3556439 | None:intergenic | 50.0% | |
| !! | GTCCCCACTTTTACTGGTTG+TGG | - | chr1_1:3557162-3557181 | Msa0001840:intron | 50.0% |
| ACCCACTTGCAAGGAGGATA+TGG | - | chr1_1:3558790-3558809 | Msa0001840:intron | 50.0% | |
| CCCATATCCTCCTTGCAAGT+GGG | + | chr1_1:3558794-3558813 | None:intergenic | 50.0% | |
| CCCACTTGCAAGGAGGATAT+GGG | - | chr1_1:3558791-3558810 | Msa0001840:intron | 50.0% | |
| CCACTTGCAAGGAGGATATG+GGG | - | chr1_1:3558792-3558811 | Msa0001840:intron | 50.0% | |
| !! | CTTTGGGACTCACATCCTTG+TGG | - | chr1_1:3559146-3559165 | Msa0001840:intron | 50.0% |
| ATCCTTGTGGGTCTTAGCGT+TGG | - | chr1_1:3559159-3559178 | Msa0001840:intron | 50.0% | |
| ! | TTGTGGGTCTTAGCGTTGGA+GGG | - | chr1_1:3559163-3559182 | Msa0001840:intron | 50.0% |
| CAAGACGTGTCTTCCACCTT+GGG | - | chr1_1:3559207-3559226 | Msa0001840:intron | 50.0% | |
| CGGACCAAAGACATCAAAGG+CGG | + | chr1_1:3559666-3559685 | None:intergenic | 50.0% | |
| TTCACTGTGGCTGCTCACTT+GGG | + | chr1_1:3559910-3559929 | None:intergenic | 50.0% | |
| ATTCACTGTGGCTGCTCACT+TGG | + | chr1_1:3559911-3559930 | None:intergenic | 50.0% | |
| AAGTGAGCAGCCACAGTGAA+TGG | - | chr1_1:3559910-3559929 | Msa0001840:intron | 50.0% | |
| !! | TTCTTAAAGGTGCTCCTGGC+AGG | - | chr1_1:3559994-3560013 | Msa0001840:intron | 50.0% |
| !! | TCTTAAAGGTGCTCCTGGCA+GGG | - | chr1_1:3559995-3560014 | Msa0001840:intron | 50.0% |
| GAGCCCAAAGCTTGTATCCT+TGG | + | chr1_1:3560415-3560434 | None:intergenic | 50.0% | |
| GTTGGCAAAAGGCCAATCAC+AGG | - | chr1_1:3560646-3560665 | Msa0001840:intron | 50.0% | |
| AGGCTCCTAATCGTAGCAGT+TGG | + | chr1_1:3560835-3560854 | None:intergenic | 50.0% | |
| ! | ACACAGGTTAGCCATACACG+TGG | - | chr1_1:3560915-3560934 | Msa0001840:CDS | 50.0% |
| CAATGACCTGGAGTGTGTTG+TGG | + | chr1_1:3561426-3561445 | None:intergenic | 50.0% | |
| CACAACACACTCCAGGTCAT+TGG | - | chr1_1:3561424-3561443 | Msa0001840:CDS | 50.0% | |
| ACACACTCCAGGTCATTGGT+TGG | - | chr1_1:3561428-3561447 | Msa0001840:CDS | 50.0% | |
| CCAGTAACCAACCAATGACC+TGG | + | chr1_1:3561438-3561457 | None:intergenic | 50.0% | |
| ! | CCAGGTCATTGGTTGGTTAC+TGG | - | chr1_1:3561435-3561454 | Msa0001840:CDS | 50.0% |
| GCAGGAGGATCCCATGAAGA+AGG | + | chr1_1:3556921-3556940 | None:intergenic | 55.0% | |
| !! | TGAGGGTACCTTGCAAGTGC+AGG | + | chr1_1:3556939-3556958 | None:intergenic | 55.0% |
| !! | CTGCGTGTCCCCACTTTTAC+TGG | - | chr1_1:3557156-3557175 | Msa0001840:intron | 55.0% |
| CCCCATATCCTCCTTGCAAG+TGG | + | chr1_1:3558795-3558814 | None:intergenic | 55.0% | |
| CTCCAACGCTAAGACCCACA+AGG | + | chr1_1:3559164-3559183 | None:intergenic | 55.0% | |
| ! | CTTGTGGGTCTTAGCGTTGG+AGG | - | chr1_1:3559162-3559181 | Msa0001840:intron | 55.0% |
| GCAAGACGTGTCTTCCACCT+TGG | - | chr1_1:3559206-3559225 | Msa0001840:intron | 55.0% | |
| ! | CTTGAGCTCTGATGGTCCCA+AGG | + | chr1_1:3559226-3559245 | None:intergenic | 55.0% |
| CCAAAGACATCAAAGGCGGC+TGG | + | chr1_1:3559662-3559681 | None:intergenic | 55.0% | |
| CCAGCCGCCTTTGATGTCTT+TGG | - | chr1_1:3559659-3559678 | Msa0001840:intron | 55.0% | |
| CTGTGAGCAGCCATTCACTG+TGG | + | chr1_1:3559923-3559942 | None:intergenic | 55.0% | |
| !! | CTTAAAGGTGCTCCTGGCAG+GGG | - | chr1_1:3559996-3560015 | Msa0001840:intron | 55.0% |
| ! | ACTGGTACTGGAGGTCCTGT+TGG | + | chr1_1:3561351-3561370 | None:intergenic | 55.0% |
| AAAGGCCCACAACACACTCC+AGG | - | chr1_1:3561417-3561436 | Msa0001840:CDS | 55.0% | |
| GGGATCCTCCTGCACTTGCA+AGG | - | chr1_1:3556928-3556947 | Msa0001840:intron | 60.0% | |
| GGGTACCTTGCAAGTGCAGG+AGG | + | chr1_1:3556936-3556955 | None:intergenic | 60.0% | |
| ! | GAGCTCTGATGGTCCCAAGG+TGG | + | chr1_1:3559223-3559242 | None:intergenic | 60.0% |
| AAGTGGGGACACGCAGCCGT+AGG | + | chr1_1:3557152-3557171 | None:intergenic | 65.0% | |
| TGGGAGAGGAATCCCCTGCC+AGG | + | chr1_1:3560011-3560030 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 3556013 | 3561721 | 3556013 | ID=Msa0001840;Name=Msa0001840 |
| chr1_1 | mRNA | 3556013 | 3561721 | 3556013 | ID=Msa0001840-mRNA-1;Parent=Msa0001840;Name=Msa0001840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=183|1|1|1|1|1|8|191|591 |
| chr1_1 | exon | 3556013 | 3556813 | 3556013 | ID=Msa0001840-mRNA-1:exon:1037;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3557030 | 3557094 | 3557030 | ID=Msa0001840-mRNA-1:exon:1036;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3557193 | 3557362 | 3557193 | ID=Msa0001840-mRNA-1:exon:1035;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3557681 | 3557864 | 3557681 | ID=Msa0001840-mRNA-1:exon:1034;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3558004 | 3558078 | 3558004 | ID=Msa0001840-mRNA-1:exon:1033;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3558408 | 3558600 | 3558408 | ID=Msa0001840-mRNA-1:exon:1032;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3560785 | 3561026 | 3560785 | ID=Msa0001840-mRNA-1:exon:1031;Parent=Msa0001840-mRNA-1 |
| chr1_1 | exon | 3561302 | 3561721 | 3561302 | ID=Msa0001840-mRNA-1:exon:1030;Parent=Msa0001840-mRNA-1 |
| chr1_1 | five_prime_UTR | 3561539 | 3561721 | 3561539 | ID=Msa0001840-mRNA-1:five_prime_utr;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3561302 | 3561538 | 3561302 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3560785 | 3561026 | 3560785 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3558408 | 3558600 | 3558408 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3558004 | 3558078 | 3558004 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3557681 | 3557864 | 3557681 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3557193 | 3557362 | 3557193 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3557030 | 3557094 | 3557030 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | CDS | 3556204 | 3556813 | 3556204 | ID=Msa0001840-mRNA-1:cds;Parent=Msa0001840-mRNA-1 |
| chr1_1 | three_prime_UTR | 3556013 | 3556203 | 3556013 | ID=Msa0001840-mRNA-1:three_prime_utr;Parent=Msa0001840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
