Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574940 | XP_039685576.1 | 97.466 | 592 | 14 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574940 | sp|Q8L612|MACP1_ARATH | 56.678 | 614 | 234 | 11 | 5 | 588 | 8 | 619 | 0.0 | 706 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574940 | A0A396GWE6 | 97.466 | 592 | 14 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1181 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001840 | Msa0574940 | 0.806275 | 8.903817e-50 | -8.615850e-47 |
| Msa0186320 | Msa0574940 | 0.803267 | 3.782648e-49 | -8.615850e-47 |
| Msa0222980 | Msa0574940 | 0.805629 | 1.217059e-49 | -8.615850e-47 |
| Msa0443020 | Msa0574940 | 0.801228 | 9.938736e-49 | -8.615850e-47 |
| Msa0506860 | Msa0574940 | 0.802273 | 6.067848e-49 | -8.615850e-47 |
| Msa0574940 | Msa0930730 | 0.840769 | 7.124114e-58 | -8.615850e-47 |
| Msa0574940 | Msa1173490 | 0.804369 | 2.232383e-49 | -8.615850e-47 |
| Msa0574940 | Msa1276520 | 0.815749 | 7.882647e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574940 | MtrunA17_Chr8g0391931 | 97.466 | 592 | 14 | 1 | 1 | 591 | 1 | 592 | 0.0 | 1181 |
| Msa0574940 | MtrunA17_Chr3g0122211 | 46.458 | 607 | 297 | 10 | 7 | 588 | 15 | 618 | 0.0 | 542 |
| Msa0574940 | MtrunA17_Chr8g0377631 | 45.793 | 618 | 302 | 10 | 1 | 588 | 3 | 617 | 0.0 | 541 |
| Msa0574940 | MtrunA17_Chr2g0277061 | 47.264 | 603 | 286 | 10 | 5 | 591 | 11 | 597 | 0.0 | 525 |
| Msa0574940 | MtrunA17_Chr8g0385121 | 46.218 | 595 | 299 | 9 | 6 | 591 | 10 | 592 | 3.41e-168 | 491 |
| Msa0574940 | MtrunA17_Chr4g0046841 | 42.450 | 596 | 323 | 8 | 6 | 587 | 22 | 611 | 3.07e-152 | 451 |
| Msa0574940 | MtrunA17_Chr2g0284691 | 41.176 | 595 | 284 | 14 | 9 | 588 | 22 | 565 | 6.28e-131 | 395 |
| Msa0574940 | MtrunA17_Chr4g0013011 | 39.057 | 594 | 324 | 11 | 9 | 588 | 14 | 583 | 1.11e-129 | 392 |
| Msa0574940 | MtrunA17_Chr8g0385131 | 37.627 | 590 | 324 | 13 | 6 | 588 | 13 | 565 | 7.48e-116 | 356 |
| Msa0574940 | MtrunA17_Chr8g0385181 | 37.671 | 584 | 319 | 10 | 6 | 588 | 13 | 552 | 3.63e-113 | 348 |
| Msa0574940 | MtrunA17_Chr8g0385171 | 37.662 | 308 | 161 | 7 | 6 | 311 | 13 | 291 | 3.86e-55 | 189 |
| Msa0574940 | MtrunA17_Chr8g0385161 | 36.630 | 273 | 142 | 4 | 315 | 587 | 1 | 242 | 1.51e-44 | 159 |
| Msa0574940 | MtrunA17_Chr7g0274871 | 38.931 | 131 | 71 | 5 | 7 | 135 | 128 | 251 | 3.37e-18 | 85.1 |
| Msa0574940 | MtrunA17_Chr8g0385141 | 41.176 | 102 | 59 | 1 | 113 | 213 | 13 | 114 | 4.32e-18 | 82.4 |
| Msa0574940 | MtrunA17_Chr8g0385151 | 55.319 | 47 | 21 | 0 | 266 | 312 | 2 | 48 | 4.89e-12 | 60.8 |
| Msa0574940 | MtrunA17_Chr7g0274901 | 42.353 | 85 | 48 | 1 | 357 | 440 | 1 | 85 | 1.71e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574940 | AT1G14780.1 | 56.678 | 614 | 234 | 11 | 5 | 588 | 8 | 619 | 0.0 | 706 |
| Msa0574940 | AT4G24290.2 | 45.700 | 593 | 299 | 11 | 6 | 587 | 11 | 591 | 3.49e-170 | 497 |
| Msa0574940 | AT4G24290.3 | 45.700 | 593 | 299 | 11 | 6 | 587 | 11 | 591 | 3.49e-170 | 497 |
| Msa0574940 | AT1G28380.1 | 43.000 | 600 | 313 | 10 | 6 | 587 | 15 | 603 | 5.19e-152 | 451 |
| Msa0574940 | AT1G29690.1 | 39.594 | 591 | 298 | 10 | 6 | 588 | 21 | 560 | 8.49e-136 | 407 |
| Msa0574940 | AT4G24290.1 | 45.253 | 316 | 162 | 7 | 6 | 313 | 11 | 323 | 9.98e-81 | 258 |
Find 156 sgRNAs with CRISPR-Local
Find 367 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGAAAATTCCAGATTTC+TGG | 0.083759 | 4_1:+78690707 | None:intergenic |
| CCAGGTCATTGGTTGGTTAC+TGG | 0.132677 | 4_1:-78690523 | Msa0574940:CDS |
| CCCATCACCTCTCTTCTTAA+AGG | 0.136687 | 4_1:-78691971 | Msa0574940:CDS |
| GGGTATTTCAATACAGTATT+TGG | 0.161336 | 4_1:-78695721 | Msa0574940:CDS |
| TCGACTTGACATCAGATTTC+AGG | 0.226789 | 4_1:-78696253 | Msa0574940:CDS |
| ATCGGTATTTACATAAAGTT+TGG | 0.231358 | 4_1:+78691439 | None:intergenic |
| TCAATTGCATCTGGTTTGTT+AGG | 0.252614 | 4_1:+78692007 | None:intergenic |
| AATTGGACAAAGGGTTCTTC+TGG | 0.255985 | 4_1:-78690736 | Msa0574940:CDS |
| TACTGTATATCCTAACAAAT+TGG | 0.278849 | 4_1:-78690324 | Msa0574940:three_prime_UTR |
| CAGGTCATTGGTTGGTTACT+GGG | 0.281666 | 4_1:-78690522 | Msa0574940:CDS |
| GTTGGTTACTGGGGCAAAAT+TGG | 0.294384 | 4_1:-78690512 | Msa0574940:CDS |
| TTCAAGCTGTTCCTTCTTCA+TGG | 0.298007 | 4_1:-78695573 | Msa0574940:CDS |
| TCTGGATTGTCCCAGAAATC+TGG | 0.299066 | 4_1:-78690718 | Msa0574940:CDS |
| CCAGCCGCCTTTGATGTCTT+TGG | 0.299845 | 4_1:-78692293 | Msa0574940:CDS |
| TCTGAGGTTATTGTTCTCTA+AGG | 0.301320 | 4_1:-78690785 | Msa0574940:CDS |
| GAAAATCAAACATACCTTAT+CGG | 0.325614 | 4_1:+78691421 | None:intergenic |
| CAGTGAAATACAATCCTAAA+TGG | 0.326415 | 4_1:-78690888 | Msa0574940:CDS |
| TTCTTAAAGGTGCTCCTGGC+AGG | 0.337014 | 4_1:-78691958 | Msa0574940:CDS |
| TTAGAAAGAAGAAGTGGATA+TGG | 0.339600 | 4_1:+78695604 | None:intergenic |
| ATGCCATCATTTGCAAGTCT+TGG | 0.340388 | 4_1:+78696463 | None:intergenic |
| TTTATTAATTTCATTCATTC+CGG | 0.342439 | 4_1:+78696561 | None:intergenic |
| TTTCTCACTCTCAATTTAAT+GGG | 0.346071 | 4_1:-78691464 | Msa0574940:CDS |
| TCCCCTCTTTACACATATTA+CGG | 0.353830 | 4_1:+78692075 | None:intergenic |
| ATTCATTGTGGCTGCTCACT+TGG | 0.356902 | 4_1:+78692044 | None:intergenic |
| TCAGATTCATCGAGAACTTT+GGG | 0.359267 | 4_1:-78692822 | Msa0574940:intron |
| GTTGACATTAAATGTGATAA+AGG | 0.365745 | 4_1:-78696131 | Msa0574940:CDS |
| ACAAAGTGTTTAGGTATTGA+TGG | 0.367267 | 4_1:-78695661 | Msa0574940:CDS |
| GGCAAAATTGGTGATGGATA+AGG | 0.367412 | 4_1:-78690500 | Msa0574940:CDS |
| TTGGGTTTGATGAGGGTTCA+TGG | 0.369436 | 4_1:-78695702 | Msa0574940:CDS |
| TGCCATCATTTGCAAGTCTT+GGG | 0.374914 | 4_1:+78696464 | None:intergenic |
| TGAGAAAATTCCAGATTTCT+GGG | 0.378202 | 4_1:+78690708 | None:intergenic |
| CATTTAGGATTGTATTTCAC+TGG | 0.381293 | 4_1:+78690889 | None:intergenic |
| CTATATATATCCAATTTGTT+AGG | 0.382239 | 4_1:+78690314 | None:intergenic |
| CTAACAAATTGGATATATAT+AGG | 0.383397 | 4_1:-78690313 | Msa0574940:three_prime_UTR |
| GCAATAAGCACATCAATATC+TGG | 0.384136 | 4_1:-78690685 | Msa0574940:CDS |
| TAATAGATGTTCCACGTGTA+TGG | 0.390541 | 4_1:+78691032 | None:intergenic |
| GGTATTTCAATACAGTATTT+GGG | 0.391201 | 4_1:-78695720 | Msa0574940:CDS |
| CCGCAAATTGTTGCGTTCAA+TGG | 0.394225 | 4_1:-78692269 | Msa0574940:CDS |
| GCAAAATTGGTGATGGATAA+GGG | 0.394648 | 4_1:-78690499 | Msa0574940:CDS |
| TAAACTTACATCGAAGATAA+AGG | 0.397739 | 4_1:+78691912 | None:intergenic |
| ATCAGATTCATCGAGAACTT+TGG | 0.399107 | 4_1:-78692823 | Msa0574940:intron |
| GCAGCTAACACAAAGTGTTT+AGG | 0.401057 | 4_1:-78695670 | Msa0574940:CDS |
| AAGAATCACTTGGATGATCT+TGG | 0.408794 | 4_1:-78692709 | Msa0574940:CDS |
| GAGAAAGCTCTTAGCAGCTT+AGG | 0.414265 | 4_1:-78696284 | Msa0574940:CDS |
| ATCCTTGTGGGTCTTAGCAT+TGG | 0.417428 | 4_1:-78692793 | Msa0574940:CDS |
| AAGCTAAAATCAATTGCATC+TGG | 0.418424 | 4_1:+78691998 | None:intergenic |
| ACTACCAAGGATACAAGCTT+TGG | 0.419053 | 4_1:-78691547 | Msa0574940:CDS |
| GTTAAATCAAATTGGACAAA+GGG | 0.419356 | 4_1:-78690745 | Msa0574940:CDS |
| TATCTCTAGTTGTATTATAG+AGG | 0.429857 | 4_1:-78690277 | Msa0574940:three_prime_UTR |
| TCAAGCTGTTCCTTCTTCAT+GGG | 0.432632 | 4_1:-78695572 | Msa0574940:CDS |
| TCGGTATTTACATAAAGTTT+GGG | 0.433680 | 4_1:+78691440 | None:intergenic |
| CCATTGAACGCAACAATTTG+CGG | 0.434084 | 4_1:+78692269 | None:intergenic |
| TTGAAGGAATGAAATGCAAC+AGG | 0.437435 | 4_1:-78691275 | Msa0574940:intron |
| GCAAGACGTGTCTTCCAACT+TGG | 0.440742 | 4_1:-78692746 | Msa0574940:CDS |
| TTTGGGACTCACATCCTTGT+GGG | 0.445545 | 4_1:-78692805 | Msa0574940:CDS |
| CTTGGAGAACAGTTATTTAG+TGG | 0.446466 | 4_1:-78692691 | Msa0574940:CDS |
| CTTAAAGGTGCTCCTGGCAG+GGG | 0.451189 | 4_1:-78691956 | Msa0574940:CDS |
| GAGCCCAAAGCTTGTATCCT+TGG | 0.456844 | 4_1:+78691543 | None:intergenic |
| CACAACACACTCCAGGTCAT+TGG | 0.460697 | 4_1:-78690534 | Msa0574940:CDS |
| CTACCAAGGATACAAGCTTT+GGG | 0.463104 | 4_1:-78691546 | Msa0574940:CDS |
| GGTATGCGTTTGTTTCTTGA+AGG | 0.467322 | 4_1:-78691291 | Msa0574940:CDS |
| AAATTGAAGACACAACAATA+TGG | 0.471714 | 4_1:-78690984 | Msa0574940:CDS |
| TCACTGGTGCTGTACATACA+TGG | 0.473147 | 4_1:+78690905 | None:intergenic |
| AGATGTCAGAGTTATTCAAT+AGG | 0.474106 | 4_1:-78695774 | Msa0574940:CDS |
| TCTCTTCTTAAAGGTGCTCC+TGG | 0.475934 | 4_1:-78691962 | Msa0574940:CDS |
| TGGAGGGAAAGATTTATTGT+TGG | 0.477692 | 4_1:-78692773 | Msa0574940:CDS |
| CGTTTCTTTGAAGCAATAAG+TGG | 0.479522 | 4_1:-78690940 | Msa0574940:CDS |
| TGGGTTTGATGAGGGTTCAT+GGG | 0.483693 | 4_1:-78695701 | Msa0574940:CDS |
| AGAGGTAGATCATTGTGAAC+AGG | 0.483745 | 4_1:+78691521 | None:intergenic |
| ATAGTAGATATGTTTGTACT+TGG | 0.484397 | 4_1:+78691494 | None:intergenic |
| TCTTAAAGGTGCTCCTGGCA+GGG | 0.485486 | 4_1:-78691957 | Msa0574940:CDS |
| AAGTGATTCTTGAGCTCTGA+TGG | 0.490013 | 4_1:+78692721 | None:intergenic |
| ACCTTTAAGAAGAGAGGTGA+TGG | 0.490856 | 4_1:+78691970 | None:intergenic |
| TGTATTATAGAGGTAGTCAT+AGG | 0.492994 | 4_1:-78690267 | Msa0574940:three_prime_UTR |
| AACAAACGCATACCTGTGAT+TGG | 0.494939 | 4_1:+78691300 | None:intergenic |
| TGGGAGAGGAATCCCCTGCC+AGG | 0.495127 | 4_1:+78691944 | None:intergenic |
| AGTATTTAACAAAGAAAACT+TGG | 0.495296 | 4_1:+78690459 | None:intergenic |
| AACCCAAGACTTGCAAATGA+TGG | 0.495833 | 4_1:-78696466 | Msa0574940:five_prime_UTR |
| TTATTTACTACAACGAGACT+TGG | 0.496141 | 4_1:+78696518 | None:intergenic |
| AAGTGAGCAGCCACAATGAA+TGG | 0.499468 | 4_1:-78692042 | Msa0574940:CDS |
| ACATCGAAGATAAAGGTTGA+TGG | 0.499914 | 4_1:+78691919 | None:intergenic |
| GCTCTTAGCAGCTTAGGAAA+AGG | 0.502163 | 4_1:-78696278 | Msa0574940:CDS |
| TTCATTGTGGCTGCTCACTT+GGG | 0.505180 | 4_1:+78692045 | None:intergenic |
| AATAGGTAACAGTTGGCAAA+AGG | 0.508024 | 4_1:-78691323 | Msa0574940:intron |
| AATGTGGCATTTATTGTCAC+AGG | 0.509386 | 4_1:-78690853 | Msa0574940:CDS |
| AACCGTAATATGTGTAAAGA+GGG | 0.513657 | 4_1:-78692077 | Msa0574940:CDS |
| GTTCACAATGATCTACCTCT+TGG | 0.514768 | 4_1:-78691518 | Msa0574940:CDS |
| TAACCGTAATATGTGTAAAG+AGG | 0.516257 | 4_1:-78692078 | Msa0574940:CDS |
| CTTGTGGGTCTTAGCATTGG+AGG | 0.520866 | 4_1:-78692790 | Msa0574940:CDS |
| TGAGGGTACCTTGCAAGTGC+AGG | 0.522200 | 4_1:+78695544 | None:intergenic |
| TTTATCACATTTAATGTCAA+CGG | 0.522581 | 4_1:+78696133 | None:intergenic |
| ACTTTATGTAAATACCGATA+AGG | 0.523405 | 4_1:-78691435 | Msa0574940:intron |
| AAAGGTTGATGGCATGGGAG+AGG | 0.524548 | 4_1:+78691930 | None:intergenic |
| ATTAAATTGAGAGTGAGAAA+AGG | 0.536310 | 4_1:+78691467 | None:intergenic |
| TACAGTATTTGGGTTTGATG+AGG | 0.536814 | 4_1:-78695710 | Msa0574940:CDS |
| ACTTGTTTAGAAAGAAGAAG+TGG | 0.538346 | 4_1:+78695598 | None:intergenic |
| AATGACCTGGAGTGTGTTGT+GGG | 0.542683 | 4_1:+78690536 | None:intergenic |
| GAAGATAAAGGTTGATGGCA+TGG | 0.542889 | 4_1:+78691924 | None:intergenic |
| TGTTAAATCAAATTGGACAA+AGG | 0.543051 | 4_1:-78690746 | Msa0574940:CDS |
| ATTAATTTCATTCATTCCGG+TGG | 0.543764 | 4_1:+78696564 | None:intergenic |
| TACTGGGGCAAAATTGGTGA+TGG | 0.545267 | 4_1:-78690506 | Msa0574940:CDS |
| CAATGACCTGGAGTGTGTTG+TGG | 0.547306 | 4_1:+78690535 | None:intergenic |
| CACTCATAATAGGTAACAGT+TGG | 0.547417 | 4_1:-78691330 | Msa0574940:intron |
| TTGGAGAACAGTTATTTAGT+GGG | 0.548703 | 4_1:-78692690 | Msa0574940:CDS |
| ACAGTATTTGGGTTTGATGA+GGG | 0.549123 | 4_1:-78695709 | Msa0574940:CDS |
| AGGTCATTGGTTGGTTACTG+GGG | 0.549188 | 4_1:-78690521 | Msa0574940:CDS |
| TAATATGTGTAAAGAGGGGA+GGG | 0.551255 | 4_1:-78692072 | Msa0574940:CDS |
| ACTGGTACTGGAGGTCCTGT+TGG | 0.553126 | 4_1:+78690610 | None:intergenic |
| CCAGTAACCAACCAATGACC+TGG | 0.556235 | 4_1:+78690523 | None:intergenic |
| AGCTTACTTGGGTGAAGGTG+AGG | 0.562983 | 4_1:+78696081 | None:intergenic |
| TATGACAAATCTGACATTGG+TGG | 0.565630 | 4_1:+78691578 | None:intergenic |
| AAGATAAAGGTTGATGGCAT+GGG | 0.565900 | 4_1:+78691925 | None:intergenic |
| TAAGGGTAAGATATGTTTGT+GGG | 0.567929 | 4_1:-78690482 | Msa0574940:CDS |
| GCAGGAGGATCCCATGAAGA+AGG | 0.570234 | 4_1:+78695562 | None:intergenic |
| GAGCTCTGATGGTCCCAAGT+TGG | 0.574986 | 4_1:+78692732 | None:intergenic |
| AATAGGAAGAGTTCAATACC+TGG | 0.578976 | 4_1:-78695757 | Msa0574940:CDS |
| CACTGGTGCTGTACATACAT+GGG | 0.579155 | 4_1:+78690906 | None:intergenic |
| TTGTGGGTCTTAGCATTGGA+GGG | 0.579979 | 4_1:-78692789 | Msa0574940:CDS |
| ATAAGGGTAAGATATGTTTG+TGG | 0.580444 | 4_1:-78690483 | Msa0574940:CDS |
| CTTTGGGACTCACATCCTTG+TGG | 0.581257 | 4_1:-78692806 | Msa0574940:CDS |
| GGGATCCTCCTGCACTTGCA+AGG | 0.582684 | 4_1:-78695552 | Msa0574940:intron |
| ATCAGAGCTCAAGAATCACT+TGG | 0.583882 | 4_1:-78692719 | Msa0574940:CDS |
| TTGGGTGAAGGTGAGGATGA+CGG | 0.584337 | 4_1:+78696088 | None:intergenic |
| CCAAAGACATCAAAGGCGGC+TGG | 0.585919 | 4_1:+78692293 | None:intergenic |
| TTCAGGCTCAAATTCTGCAA+AGG | 0.587756 | 4_1:-78696236 | Msa0574940:CDS |
| GACACGTCAGAGTTATGTAA+AGG | 0.587773 | 4_1:-78690559 | Msa0574940:CDS |
| AGAACAATAACCTCAGATGT+AGG | 0.590181 | 4_1:+78690791 | None:intergenic |
| GTTGGCAAAAGGCCAATCAC+AGG | 0.591185 | 4_1:-78691312 | Msa0574940:CDS |
| TTTCAAATACGGTGGAAGAG+AGG | 0.591544 | 4_1:+78696404 | None:intergenic |
| AGGAGCACCTTTAAGAAGAG+AGG | 0.595422 | 4_1:+78691964 | None:intergenic |
| GAATCAGCTTACTTGGGTGA+AGG | 0.603291 | 4_1:+78696076 | None:intergenic |
| ACACACTCCAGGTCATTGGT+TGG | 0.604138 | 4_1:-78690530 | Msa0574940:CDS |
| GTTTCTTTGAAGCAATAAGT+GGG | 0.611904 | 4_1:-78690939 | Msa0574940:CDS |
| TGTGTTTGTACTGGTACTGG+AGG | 0.618512 | 4_1:+78690601 | None:intergenic |
| AAAGGCCCACAACACACTCC+AGG | 0.619321 | 4_1:-78690541 | Msa0574940:CDS |
| CAAGACGTGTCTTCCAACTT+GGG | 0.620804 | 4_1:-78692745 | Msa0574940:CDS |
| TCATACTTTCTTGACTACCA+AGG | 0.625611 | 4_1:-78691560 | Msa0574940:CDS |
| GTAATATGTGTAAAGAGGGG+AGG | 0.626457 | 4_1:-78692073 | Msa0574940:CDS |
| TTGCGGACCAAAGACATCAA+AGG | 0.629078 | 4_1:+78692286 | None:intergenic |
| GGGTACCTTGCAAGTGCAGG+AGG | 0.630167 | 4_1:+78695547 | None:intergenic |
| ATAGGAAGAGTTCAATACCT+GGG | 0.632447 | 4_1:-78695756 | Msa0574940:CDS |
| ATGTTTGTACTTGGACCAAG+AGG | 0.635000 | 4_1:+78691503 | None:intergenic |
| TGACGGATTGATAACGTGTA+CGG | 0.638306 | 4_1:+78696105 | None:intergenic |
| CAAAGAGAGTCCTACATCTG+AGG | 0.641177 | 4_1:-78690801 | Msa0574940:CDS |
| ACTGTATTGAAATACCCACT+TGG | 0.645812 | 4_1:+78695727 | None:intergenic |
| AAGTATGACAAATCTGACAT+TGG | 0.647643 | 4_1:+78691575 | None:intergenic |
| CCTTTAAGAAGAGAGGTGAT+GGG | 0.648998 | 4_1:+78691971 | None:intergenic |
| TACCTGGGAAAATACCAAGT+GGG | 0.650959 | 4_1:-78695741 | Msa0574940:CDS |
| CTGTGAGCAGCCATTCATTG+TGG | 0.659623 | 4_1:+78692032 | None:intergenic |
| ACCGTAATATGTGTAAAGAG+GGG | 0.664493 | 4_1:-78692076 | Msa0574940:CDS |
| CTCCAATGCTAAGACCCACA+AGG | 0.668342 | 4_1:+78692791 | None:intergenic |
| AATATGTGTAAAGAGGGGAG+GGG | 0.694252 | 4_1:-78692071 | Msa0574940:CDS |
| CGGACCAAAGACATCAAAGG+CGG | 0.704708 | 4_1:+78692289 | None:intergenic |
| AAATAGAGATCAGAAACACA+AGG | 0.714298 | 4_1:-78692647 | Msa0574940:intron |
| ATACCTGGGAAAATACCAAG+TGG | 0.723262 | 4_1:-78695742 | Msa0574940:CDS |
| ACACAGGTTAGCCATACACG+TGG | 0.725610 | 4_1:-78691043 | Msa0574940:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATAAGAAAGAAAAAAA+AGG | + | chr4_1:78691316-78691335 | None:intergenic | 10.0% |
| !!! | GAAAAAATATGTTTTAAATA+TGG | + | chr4_1:78691732-78691751 | None:intergenic | 10.0% |
| !!! | TTTATGACTAATTTTTTTTT+TGG | - | chr4_1:78691925-78691944 | Msa0574940:CDS | 10.0% |
| !! | ATTTAAATCTATTATTATGT+GGG | - | chr4_1:78692405-78692424 | Msa0574940:intron | 10.0% |
| !! | AATCAATTAACAATATTAAT+GGG | - | chr4_1:78692636-78692655 | Msa0574940:intron | 10.0% |
| !!! | CTATATTTACATTTTTTTTA+CGG | - | chr4_1:78692669-78692688 | Msa0574940:CDS | 10.0% |
| !!! | TAAATTTTTGAATGATTTTT+TGG | - | chr4_1:78692987-78693006 | Msa0574940:intron | 10.0% |
| !! | ATATTGTAAATTAATCATAA+CGG | + | chr4_1:78694385-78694404 | None:intergenic | 10.0% |
| !! | ATTTAGAGATTAATTTATTT+AGG | + | chr4_1:78694950-78694969 | None:intergenic | 10.0% |
| !! | AATCTCTAAATATTATAATA+TGG | - | chr4_1:78694959-78694978 | Msa0574940:intron | 10.0% |
| !! | TTTATTAATTTCATTCATTC+CGG | + | chr4_1:78690267-78690286 | None:intergenic | 15.0% |
| !!! | TTGACTAACATTTTTAATTT+AGG | + | chr4_1:78690340-78690359 | None:intergenic | 15.0% |
| !! | ACGTTAAATCAAAATTATAA+AGG | - | chr4_1:78691705-78691724 | Msa0574940:intron | 15.0% |
| !! | ATTAATTTAACTCATAAAGA+GGG | + | chr4_1:78692055-78692074 | None:intergenic | 15.0% |
| !! | TATTAATTTAACTCATAAAG+AGG | + | chr4_1:78692056-78692075 | None:intergenic | 15.0% |
| !! | CACATAATAATAGATTTAAA+TGG | + | chr4_1:78692406-78692425 | None:intergenic | 15.0% |
| !! | CATTTAAATCTATTATTATG+TGG | - | chr4_1:78692404-78692423 | Msa0574940:intron | 15.0% |
| !! | GAATCAATTAACAATATTAA+TGG | - | chr4_1:78692635-78692654 | Msa0574940:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | chr4_1:78693302-78693321 | None:intergenic | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | + | chr4_1:78693210-78693229 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | - | chr4_1:78693110-78693129 | Msa0574940:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | - | chr4_1:78693302-78693321 | Msa0574940:intron | 15.0% |
| !! | CTAATGTAACAAAAATAAAA+GGG | + | chr4_1:78693376-78693395 | None:intergenic | 15.0% |
| !! | ACTAATGTAACAAAAATAAA+AGG | + | chr4_1:78693377-78693396 | None:intergenic | 15.0% |
| !!! | ATAAATTGATTTTTATAGGA+AGG | - | chr4_1:78693896-78693915 | Msa0574940:intron | 15.0% |
| !!! | TAATTTGATTTTGACAATTT+TGG | - | chr4_1:78695015-78695034 | Msa0574940:intron | 15.0% |
| !! | ATATATAATACTATATGAAG+AGG | + | chr4_1:78695438-78695457 | None:intergenic | 15.0% |
| !! | AAAATATATAAAAAGAAGGA+AGG | - | chr4_1:78696415-78696434 | Msa0574940:five_prime_UTR | 15.0% |
| !!! | CTTTTATTTTTTGATAAAAC+AGG | - | chr4_1:78696451-78696470 | Msa0574940:five_prime_UTR | 15.0% |
| !!! | CAAGTTTTTCTTTTCAAATA+CGG | + | chr4_1:78690435-78690454 | None:intergenic | 20.0% |
| !! | GTCATAAAAACCAAAAAATA+TGG | - | chr4_1:78690504-78690523 | Msa0574940:CDS | 20.0% |
| !! | TTTATCACATTTAATGTCAA+CGG | + | chr4_1:78690695-78690714 | None:intergenic | 20.0% |
| !! | TGTTAAGTTAATACGAAATT+CGG | + | chr4_1:78690972-78690991 | None:intergenic | 20.0% |
| !!! | TTTTTCATATGATTGAGATT+TGG | - | chr4_1:78691009-78691028 | Msa0574940:CDS | 20.0% |
| !!! | TTTTCATATGATTGAGATTT+GGG | - | chr4_1:78691010-78691029 | Msa0574940:CDS | 20.0% |
| !! | AAGAAAGTCATTAATGTAAT+GGG | + | chr4_1:78691464-78691483 | None:intergenic | 20.0% |
| !! | TTACCGTTAATTATACAATT+CGG | - | chr4_1:78691549-78691568 | Msa0574940:CDS | 20.0% |
| !! | ATATACAATATGTAGAAGTA+TGG | - | chr4_1:78692143-78692162 | Msa0574940:intron | 20.0% |
| !!! | GTTAGAAATTCACTTTTTTA+AGG | + | chr4_1:78692197-78692216 | None:intergenic | 20.0% |
| !!! | ATTTTTTTCAAGTAGTATAG+TGG | + | chr4_1:78692219-78692238 | None:intergenic | 20.0% |
| !! | CATTGTTATAAACAAAAATG+AGG | + | chr4_1:78692263-78692282 | None:intergenic | 20.0% |
| !!! | ATACGTTTTTTTGTTTTGTT+AGG | - | chr4_1:78692507-78692526 | Msa0574940:intron | 20.0% |
| !!! | TACGTTTTTTTGTTTTGTTA+GGG | - | chr4_1:78692508-78692527 | Msa0574940:intron | 20.0% |
| !!! | AATCAAACTTTATTTTAGCA+GGG | + | chr4_1:78692950-78692969 | None:intergenic | 20.0% |
| !!! | TAATCAAACTTTATTTTAGC+AGG | + | chr4_1:78692951-78692970 | None:intergenic | 20.0% |
| !!! | AATTTTGCGATAATTTTTTG+CGG | - | chr4_1:78693145-78693164 | Msa0574940:intron | 20.0% |
| !! | TAAACAAATTTGAATTGAGT+AGG | - | chr4_1:78693239-78693258 | Msa0574940:intron | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+GGG | - | chr4_1:78693240-78693259 | Msa0574940:intron | 20.0% |
| !!! | AAATTTGTTGCAGAATATAT+TGG | + | chr4_1:78693557-78693576 | None:intergenic | 20.0% |
| !! | ATATGCAAAAAATTCAGTTT+AGG | + | chr4_1:78693606-78693625 | None:intergenic | 20.0% |
| !! | TCTTTCAAGAACATAAATTA+AGG | + | chr4_1:78693971-78693990 | None:intergenic | 20.0% |
| !!! | TTTTGAACGTGATTTAAAAA+TGG | - | chr4_1:78694325-78694344 | Msa0574940:intron | 20.0% |
| !! | ATTGAGATCAAATCAAATTA+TGG | + | chr4_1:78694479-78694498 | None:intergenic | 20.0% |
| !! | ACAAACATTTGATTCAAAAT+TGG | - | chr4_1:78694982-78695001 | Msa0574940:intron | 20.0% |
| !! | CAAACATTTGATTCAAAATT+GGG | - | chr4_1:78694983-78695002 | Msa0574940:intron | 20.0% |
| !! | TAACCATAAACATTATGAAT+AGG | + | chr4_1:78695154-78695173 | None:intergenic | 20.0% |
| !! | TATGAGTGAATAAGAAATTT+AGG | + | chr4_1:78695483-78695502 | None:intergenic | 20.0% |
| !! | ATTTCTTATTCACTCATAAT+AGG | - | chr4_1:78695485-78695504 | Msa0574940:intron | 20.0% |
| !!! | TAGTTAGTAGTATTATTTTC+TGG | - | chr4_1:78695593-78695612 | Msa0574940:CDS | 20.0% |
| !!! | ACATTACTATCATGTAATTT+TGG | - | chr4_1:78695637-78695656 | Msa0574940:CDS | 20.0% |
| !! | TATGATTCAATTGTCATAAT+TGG | - | chr4_1:78695664-78695683 | Msa0574940:CDS | 20.0% |
| !!! | CTTTTGTTGTTAAATCAAAT+TGG | - | chr4_1:78696072-78696091 | Msa0574940:intron | 20.0% |
| !!! | AAAGTACTGTTGATTTTTTT+TGG | + | chr4_1:78696178-78696197 | None:intergenic | 20.0% |
| !!! | AAAAAAATCAACAGTACTTT+TGG | - | chr4_1:78696178-78696197 | Msa0574940:CDS | 20.0% |
| !! | ACAAAAAATGTTGAAATTTG+TGG | - | chr4_1:78696244-78696263 | Msa0574940:CDS | 20.0% |
| !! | AGTATTTAACAAAGAAAACT+TGG | + | chr4_1:78696369-78696388 | None:intergenic | 20.0% |
| !!! | TATTTGGATTTTTTGTTCAT+AGG | + | chr4_1:78696394-78696413 | None:intergenic | 20.0% |
| !!! | CTATATATATCCAATTTGTT+AGG | + | chr4_1:78696514-78696533 | None:intergenic | 20.0% |
| !! | CTAACAAATTGGATATATAT+AGG | - | chr4_1:78696512-78696531 | Msa0574940:five_prime_UTR | 20.0% |
| !! | ATACTTCTCTCATTTTCATT+TGG | - | chr4_1:78690482-78690501 | Msa0574940:CDS | 25.0% |
| ! | AAACCAAAAAATATGGATGA+AGG | - | chr4_1:78690511-78690530 | Msa0574940:CDS | 25.0% |
| ! | GTTGACATTAAATGTGATAA+AGG | - | chr4_1:78690694-78690713 | Msa0574940:CDS | 25.0% |
| ! | TTTATTAGATTTGACTCAAG+TGG | - | chr4_1:78690818-78690837 | Msa0574940:CDS | 25.0% |
| ! | GGTATTTCAATACAGTATTT+GGG | - | chr4_1:78691105-78691124 | Msa0574940:intron | 25.0% |
| ! | AAAAAAGGAAGAAATCATGA+GGG | + | chr4_1:78691301-78691320 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAAGAAATCATG+AGG | + | chr4_1:78691302-78691321 | None:intergenic | 25.0% |
| ! | ATTGATTGGTACATAGTATT+TGG | + | chr4_1:78691420-78691439 | None:intergenic | 25.0% |
| ! | ATATGATTTCCATGATTGAT+TGG | + | chr4_1:78691434-78691453 | None:intergenic | 25.0% |
| ! | CAAGAAAGTCATTAATGTAA+TGG | + | chr4_1:78691465-78691484 | None:intergenic | 25.0% |
| ! | CATTACATTAATGACTTTCT+TGG | - | chr4_1:78691463-78691482 | Msa0574940:CDS | 25.0% |
| ! | TACCGTTAATTATACAATTC+GGG | - | chr4_1:78691550-78691569 | Msa0574940:CDS | 25.0% |
| ! | TACCCGAATTGTATAATTAA+CGG | + | chr4_1:78691555-78691574 | None:intergenic | 25.0% |
| ! | TCTATACAATTCAAATGTAG+TGG | + | chr4_1:78691640-78691659 | None:intergenic | 25.0% |
| ! | GTAACATGGAAATATATAAG+AGG | - | chr4_1:78691884-78691903 | Msa0574940:intron | 25.0% |
| ! | TATATAAGAGGTTATCTTGT+TGG | - | chr4_1:78691896-78691915 | Msa0574940:intron | 25.0% |
| ! | AGTCAACTTAATTACATCAA+TGG | - | chr4_1:78692361-78692380 | Msa0574940:intron | 25.0% |
| ! | TAATTACATCAATGGTTTCA+AGG | - | chr4_1:78692369-78692388 | Msa0574940:intron | 25.0% |
| ! | ACAAAAAAACGTATTACTAG+TGG | + | chr4_1:78692501-78692520 | None:intergenic | 25.0% |
| !!! | ACGTTTTTTTGTTTTGTTAG+GGG | - | chr4_1:78692509-78692528 | Msa0574940:intron | 25.0% |
| ! | TTAGAAAAATAGACTACTAG+TGG | + | chr4_1:78692562-78692581 | None:intergenic | 25.0% |
| ! | AGGGCAAAAAAACAAAATTA+GGG | - | chr4_1:78693273-78693292 | Msa0574940:intron | 25.0% |
| ! | TAATAAGTACAATTGCATCT+AGG | - | chr4_1:78693687-78693706 | Msa0574940:intron | 25.0% |
| !!! | AATTGATTTTTATAGGAAGG+AGG | - | chr4_1:78693899-78693918 | Msa0574940:intron | 25.0% |
| !!! | ATTGATTTTTATAGGAAGGA+GGG | - | chr4_1:78693900-78693919 | Msa0574940:intron | 25.0% |
| !!! | TGTTTCTGATCTCTATTTTT+GGG | + | chr4_1:78694176-78694195 | None:intergenic | 25.0% |
| ! | ACCCATAAAAACAACTAATA+AGG | - | chr4_1:78694440-78694459 | Msa0574940:intron | 25.0% |
| !!! | CCCTTATTAGTTGTTTTTAT+GGG | + | chr4_1:78694444-78694463 | None:intergenic | 25.0% |
| ! | CCCATAAAAACAACTAATAA+GGG | - | chr4_1:78694441-78694460 | Msa0574940:intron | 25.0% |
| ! | AATTCAATGTTTGAAGATGT+AGG | + | chr4_1:78694718-78694737 | None:intergenic | 25.0% |
| !! | TCTTCAAACATTGAATTTTC+AGG | - | chr4_1:78694721-78694740 | Msa0574940:intron | 25.0% |
| !! | CTTCAAACATTGAATTTTCA+GGG | - | chr4_1:78694722-78694741 | Msa0574940:intron | 25.0% |
| ! | TAAACTTACATCGAAGATAA+AGG | + | chr4_1:78694916-78694935 | None:intergenic | 25.0% |
| ! | ATAGTAGATATGTTTGTACT+TGG | + | chr4_1:78695334-78695353 | None:intergenic | 25.0% |
| ! | ATTAAATTGAGAGTGAGAAA+AGG | + | chr4_1:78695361-78695380 | None:intergenic | 25.0% |
| !! | TTTTCTCACTCTCAATTTAA+TGG | - | chr4_1:78695360-78695379 | Msa0574940:intron | 25.0% |
| ! | TTTCTCACTCTCAATTTAAT+GGG | - | chr4_1:78695361-78695380 | Msa0574940:intron | 25.0% |
| ! | TCGGTATTTACATAAAGTTT+GGG | + | chr4_1:78695388-78695407 | None:intergenic | 25.0% |
| ! | ATCGGTATTTACATAAAGTT+TGG | + | chr4_1:78695389-78695408 | None:intergenic | 25.0% |
| ! | ACTTTATGTAAATACCGATA+AGG | - | chr4_1:78695390-78695409 | Msa0574940:intron | 25.0% |
| ! | GAAAATCAAACATACCTTAT+CGG | + | chr4_1:78695407-78695426 | None:intergenic | 25.0% |
| ! | ATAATACTATATGAAGAGGA+AGG | + | chr4_1:78695434-78695453 | None:intergenic | 25.0% |
| !! | TTACTATCATGTAATTTTGG+TGG | - | chr4_1:78695640-78695659 | Msa0574940:CDS | 25.0% |
| ! | AAATTGAAGACACAACAATA+TGG | - | chr4_1:78695841-78695860 | Msa0574940:intron | 25.0% |
| ! | TGTTAAATCAAATTGGACAA+AGG | - | chr4_1:78696079-78696098 | Msa0574940:intron | 25.0% |
| ! | GTTAAATCAAATTGGACAAA+GGG | - | chr4_1:78696080-78696099 | Msa0574940:intron | 25.0% |
| !!! | AACATTTTTTGTGTTTGTAC+TGG | + | chr4_1:78696236-78696255 | None:intergenic | 25.0% |
| ! | TACTGTATATCCTAACAAAT+TGG | - | chr4_1:78696501-78696520 | Msa0574940:five_prime_UTR | 25.0% |
| ! | TATCTCTAGTTGTATTATAG+AGG | - | chr4_1:78696548-78696567 | Msa0574940:five_prime_UTR | 25.0% |
| TTATTTACTACAACGAGACT+TGG | + | chr4_1:78690310-78690329 | None:intergenic | 30.0% | |
| ! | GTTTTTCTTTTCAAATACGG+TGG | + | chr4_1:78690432-78690451 | None:intergenic | 30.0% |
| !!! | ATGCCTTCATCCATATTTTT+TGG | + | chr4_1:78690517-78690536 | None:intergenic | 30.0% |
| ATTAGTGAATCAGCTTACTT+GGG | + | chr4_1:78690758-78690777 | None:intergenic | 30.0% | |
| AATTAGTGAATCAGCTTACT+TGG | + | chr4_1:78690759-78690778 | None:intergenic | 30.0% | |
| TAGTAAAAGTTGAATCAAGC+AGG | - | chr4_1:78690852-78690871 | Msa0574940:CDS | 30.0% | |
| AGATGTCAGAGTTATTCAAT+AGG | - | chr4_1:78691051-78691070 | Msa0574940:intron | 30.0% | |
| GGGTATTTCAATACAGTATT+TGG | - | chr4_1:78691104-78691123 | Msa0574940:intron | 30.0% | |
| !! | ACAAAGTGTTTAGGTATTGA+TGG | - | chr4_1:78691164-78691183 | Msa0574940:intron | 30.0% |
| TTAGAAAGAAGAAGTGGATA+TGG | + | chr4_1:78691224-78691243 | None:intergenic | 30.0% | |
| ACTTGTTTAGAAAGAAGAAG+TGG | + | chr4_1:78691230-78691249 | None:intergenic | 30.0% | |
| TTTCTATCCCAAAGTAAAAC+TGG | - | chr4_1:78691382-78691401 | Msa0574940:intron | 30.0% | |
| ! | GGAAAAACCAGTTTTACTTT+GGG | + | chr4_1:78691392-78691411 | None:intergenic | 30.0% |
| ! | TGGAAAAACCAGTTTTACTT+TGG | + | chr4_1:78691393-78691412 | None:intergenic | 30.0% |
| TACTATGTACCAATCAATCA+TGG | - | chr4_1:78691422-78691441 | Msa0574940:intron | 30.0% | |
| !! | CTTTCTTGGTAATTTTCCTA+CGG | - | chr4_1:78691477-78691496 | Msa0574940:CDS | 30.0% |
| !! | TTTCTTGGTAATTTTCCTAC+GGG | - | chr4_1:78691478-78691497 | Msa0574940:CDS | 30.0% |
| TTCAGAATTGATCTACAACA+TGG | - | chr4_1:78691610-78691629 | Msa0574940:intron | 30.0% | |
| TCATATGATCAAGAGAGATA+TGG | + | chr4_1:78691806-78691825 | None:intergenic | 30.0% | |
| ACAAAAATGTAGTCCAAGTA+TGG | + | chr4_1:78691993-78692012 | None:intergenic | 30.0% | |
| GAGATTAATCACTAGGAATT+TGG | + | chr4_1:78692089-78692108 | None:intergenic | 30.0% | |
| TACCAGCTAAGTTAAGTTAA+CGG | + | chr4_1:78692111-78692130 | None:intergenic | 30.0% | |
| AGCCAGATAATTTGATTGAA+CGG | - | chr4_1:78692428-78692447 | Msa0574940:intron | 30.0% | |
| TATTACTAGTGGCTAACAAA+AGG | + | chr4_1:78692490-78692509 | None:intergenic | 30.0% | |
| GGAGAAAGTTATGATTACAA+TGG | - | chr4_1:78692690-78692709 | Msa0574940:CDS | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | chr4_1:78693333-78693352 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | chr4_1:78693332-78693351 | None:intergenic | 30.0% |
| AAGTAAGGACTAAACTTACA+AGG | + | chr4_1:78693317-78693336 | None:intergenic | 30.0% | |
| CAAGATTAGAACACTATGAA+AGG | - | chr4_1:78693013-78693032 | Msa0574940:intron | 30.0% | |
| CAGGGCAAAAAAACAAAATT+AGG | - | chr4_1:78693272-78693291 | Msa0574940:intron | 30.0% | |
| AAGTAAGGACTAAACTTACA+AGG | - | chr4_1:78693317-78693336 | Msa0574940:intron | 30.0% | |
| !! | TTACAAGGTCGCTATTTTAT+AGG | - | chr4_1:78693332-78693351 | Msa0574940:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | - | chr4_1:78693333-78693352 | Msa0574940:intron | 30.0% |
| ! | TTGAACTGTTCTAAGTGATA+AGG | - | chr4_1:78693430-78693449 | Msa0574940:intron | 30.0% |
| ! | TGAACTGTTCTAAGTGATAA+GGG | - | chr4_1:78693431-78693450 | Msa0574940:intron | 30.0% |
| TTGGAGAACAGTTATTTAGT+GGG | - | chr4_1:78694135-78694154 | Msa0574940:intron | 30.0% | |
| !! | GTGTTTCTGATCTCTATTTT+TGG | + | chr4_1:78694177-78694196 | None:intergenic | 30.0% |
| AAATAGAGATCAGAAACACA+AGG | - | chr4_1:78694178-78694197 | Msa0574940:intron | 30.0% | |
| !!! | GCCCTTATTAGTTGTTTTTA+TGG | + | chr4_1:78694445-78694464 | None:intergenic | 30.0% |
| !!! | GTGTTTTTTTAGCATGTCAA+TGG | + | chr4_1:78694507-78694526 | None:intergenic | 30.0% |
| TTGACATGCTAAAAAAACAC+AGG | - | chr4_1:78694507-78694526 | Msa0574940:intron | 30.0% | |
| !!! | TCTGTCATTTTCTTTCGAAA+TGG | - | chr4_1:78694645-78694664 | Msa0574940:intron | 30.0% |
| TAACCGTAATATGTGTAAAG+AGG | - | chr4_1:78694747-78694766 | Msa0574940:intron | 30.0% | |
| AACCGTAATATGTGTAAAGA+GGG | - | chr4_1:78694748-78694767 | Msa0574940:intron | 30.0% | |
| AAGCTAAAATCAATTGCATC+TGG | + | chr4_1:78694830-78694849 | None:intergenic | 30.0% | |
| ACAAGGTTTAATAAAGCCTT+TGG | - | chr4_1:78695126-78695145 | Msa0574940:intron | 30.0% | |
| CAAGGTTTAATAAAGCCTTT+GGG | - | chr4_1:78695127-78695146 | Msa0574940:intron | 30.0% | |
| GGTCCTATTCATAATGTTTA+TGG | - | chr4_1:78695148-78695167 | Msa0574940:intron | 30.0% | |
| AAGTATGACAAATCTGACAT+TGG | + | chr4_1:78695253-78695272 | None:intergenic | 30.0% | |
| !! | CTTAGCTAACAAGTCATTTT+TGG | + | chr4_1:78695740-78695759 | None:intergenic | 30.0% |
| !! | CAAAAATGACTTGTTAGCTA+AGG | - | chr4_1:78695738-78695757 | Msa0574940:CDS | 30.0% |
| GTTAGCTAAGGTAATTTACA+AGG | - | chr4_1:78695750-78695769 | Msa0574940:CDS | 30.0% | |
| !! | ATTTTGTTGCTAAGCATTGT+TGG | + | chr4_1:78695825-78695844 | None:intergenic | 30.0% |
| !! | GTTTCTTTGAAGCAATAAGT+GGG | - | chr4_1:78695886-78695905 | Msa0574940:intron | 30.0% |
| ! | CATTTAGGATTGTATTTCAC+TGG | + | chr4_1:78695939-78695958 | None:intergenic | 30.0% |
| CAGTGAAATACAATCCTAAA+TGG | - | chr4_1:78695937-78695956 | Msa0574940:intron | 30.0% | |
| !!! | TTTTTTTCAGTGCTCCATTT+AGG | + | chr4_1:78695954-78695973 | None:intergenic | 30.0% |
| TGAGAAAATTCCAGATTTCT+GGG | + | chr4_1:78696120-78696139 | None:intergenic | 30.0% | |
| ATAAGGGTAAGATATGTTTG+TGG | - | chr4_1:78696342-78696361 | Msa0574940:five_prime_UTR | 30.0% | |
| TAAGGGTAAGATATGTTTGT+GGG | - | chr4_1:78696343-78696362 | Msa0574940:five_prime_UTR | 30.0% | |
| TGTATTATAGAGGTAGTCAT+AGG | - | chr4_1:78696558-78696577 | Msa0574940:five_prime_UTR | 30.0% | |
| ! | TCTTTTATGGATCCAAAACC+TGG | + | chr4_1:78690667-78690686 | None:intergenic | 35.0% |
| AATACGAAATTCGGTTGAGA+GGG | + | chr4_1:78690963-78690982 | None:intergenic | 35.0% | |
| TAATACGAAATTCGGTTGAG+AGG | + | chr4_1:78690964-78690983 | None:intergenic | 35.0% | |
| AATAGGAAGAGTTCAATACC+TGG | - | chr4_1:78691068-78691087 | Msa0574940:intron | 35.0% | |
| ATAGGAAGAGTTCAATACCT+GGG | - | chr4_1:78691069-78691088 | Msa0574940:intron | 35.0% | |
| ACTGTATTGAAATACCCACT+TGG | + | chr4_1:78691101-78691120 | None:intergenic | 35.0% | |
| ! | TACAGTATTTGGGTTTGATG+AGG | - | chr4_1:78691115-78691134 | Msa0574940:intron | 35.0% |
| ! | ACAGTATTTGGGTTTGATGA+GGG | - | chr4_1:78691116-78691135 | Msa0574940:intron | 35.0% |
| ATGATCAAGAGAGATATGGT+CGG | + | chr4_1:78691802-78691821 | None:intergenic | 35.0% | |
| TATGTTAGCATCACCATACT+TGG | - | chr4_1:78691977-78691996 | Msa0574940:CDS | 35.0% | |
| GTTAACGGAGATTAATCACT+AGG | + | chr4_1:78692096-78692115 | None:intergenic | 35.0% | |
| CTCCGTTCAATCAAATTATC+TGG | + | chr4_1:78692433-78692452 | None:intergenic | 35.0% | |
| !!! | TTTGCGATAATTTTTTGCGG+AGG | - | chr4_1:78693148-78693167 | Msa0574940:intron | 35.0% |
| TTCAAATATACCCACTTGCA+AGG | - | chr4_1:78693650-78693669 | Msa0574940:intron | 35.0% | |
| ! | AGTTTGAGTTTGTAGTCTAG+AGG | - | chr4_1:78693813-78693832 | Msa0574940:intron | 35.0% |
| GGAAGGAGGGATTATTTATT+TGG | - | chr4_1:78693913-78693932 | Msa0574940:intron | 35.0% | |
| TTAAGGAACTTCGTCTGTAT+AGG | + | chr4_1:78693954-78693973 | None:intergenic | 35.0% | |
| ATCAGATTCATCGAGAACTT+TGG | - | chr4_1:78694002-78694021 | Msa0574940:intron | 35.0% | |
| TCAGATTCATCGAGAACTTT+GGG | - | chr4_1:78694003-78694022 | Msa0574940:intron | 35.0% | |
| TGGAGGGAAAGATTTATTGT+TGG | - | chr4_1:78694052-78694071 | Msa0574940:intron | 35.0% | |
| AAGAATCACTTGGATGATCT+TGG | - | chr4_1:78694116-78694135 | Msa0574940:intron | 35.0% | |
| CTTGGAGAACAGTTATTTAG+TGG | - | chr4_1:78694134-78694153 | Msa0574940:intron | 35.0% | |
| !!! | TCTGATCTCTATTTTTGGGA+AGG | + | chr4_1:78694172-78694191 | None:intergenic | 35.0% |
| ! | ACGTACATCTTTTGCACAAA+CGG | + | chr4_1:78694590-78694609 | None:intergenic | 35.0% |
| ACCGTAATATGTGTAAAGAG+GGG | - | chr4_1:78694749-78694768 | Msa0574940:intron | 35.0% | |
| TCCCCTCTTTACACATATTA+CGG | + | chr4_1:78694753-78694772 | None:intergenic | 35.0% | |
| TAATATGTGTAAAGAGGGGA+GGG | - | chr4_1:78694753-78694772 | Msa0574940:intron | 35.0% | |
| !! | TCAATTGCATCTGGTTTGTT+AGG | + | chr4_1:78694821-78694840 | None:intergenic | 35.0% |
| !! | AAGATAAAGGTTGATGGCAT+GGG | + | chr4_1:78694903-78694922 | None:intergenic | 35.0% |
| ACATCGAAGATAAAGGTTGA+TGG | + | chr4_1:78694909-78694928 | None:intergenic | 35.0% | |
| GCTTGGAAGTCAATGAATTA+TGG | + | chr4_1:78695099-78695118 | None:intergenic | 35.0% | |
| ACATTATGAATAGGACCCAA+AGG | + | chr4_1:78695145-78695164 | None:intergenic | 35.0% | |
| TTGGTTGTTGAACTAATGAG+AGG | - | chr4_1:78695196-78695215 | Msa0574940:intron | 35.0% | |
| TATGACAAATCTGACATTGG+TGG | + | chr4_1:78695250-78695269 | None:intergenic | 35.0% | |
| TCATACTTTCTTGACTACCA+AGG | - | chr4_1:78695265-78695284 | Msa0574940:intron | 35.0% | |
| CACTCATAATAGGTAACAGT+TGG | - | chr4_1:78695495-78695514 | Msa0574940:intron | 35.0% | |
| AATAGGTAACAGTTGGCAAA+AGG | - | chr4_1:78695502-78695521 | Msa0574940:intron | 35.0% | |
| TTGAAGGAATGAAATGCAAC+AGG | - | chr4_1:78695550-78695569 | Msa0574940:intron | 35.0% | |
| TTATTCCAACTGCTACGATT+AGG | - | chr4_1:78695694-78695713 | Msa0574940:CDS | 35.0% | |
| ! | TTTGGTTCCATATGCTAACA+AGG | + | chr4_1:78695722-78695741 | None:intergenic | 35.0% |
| TAATAGATGTTCCACGTGTA+TGG | + | chr4_1:78695796-78695815 | None:intergenic | 35.0% | |
| !! | CGTTTCTTTGAAGCAATAAG+TGG | - | chr4_1:78695885-78695904 | Msa0574940:intron | 35.0% |
| !! | ATGGAGCACTGAAAAAAATG+TGG | - | chr4_1:78695956-78695975 | Msa0574940:intron | 35.0% |
| AATGTGGCATTTATTGTCAC+AGG | - | chr4_1:78695972-78695991 | Msa0574940:intron | 35.0% | |
| AGAACAATAACCTCAGATGT+AGG | + | chr4_1:78696037-78696056 | None:intergenic | 35.0% | |
| ! | TCTGAGGTTATTGTTCTCTA+AGG | - | chr4_1:78696040-78696059 | Msa0574940:intron | 35.0% |
| CTGAGAAAATTCCAGATTTC+TGG | + | chr4_1:78696121-78696140 | None:intergenic | 35.0% | |
| GCAATAAGCACATCAATATC+TGG | - | chr4_1:78696140-78696159 | Msa0574940:CDS | 35.0% | |
| ! | GATTCTAGTGTTTTTCCAAC+AGG | - | chr4_1:78696200-78696219 | Msa0574940:CDS | 35.0% |
| !! | TTTTGTGTTTGTACTGGTAC+TGG | + | chr4_1:78696230-78696249 | None:intergenic | 35.0% |
| !! | GCAAAATTGGTGATGGATAA+GGG | - | chr4_1:78696326-78696345 | Msa0574940:five_prime_UTR | 35.0% |
| AACCCAAGACTTGCAAATGA+TGG | - | chr4_1:78690359-78690378 | Msa0574940:three_prime_UTR | 40.0% | |
| TGCCATCATTTGCAAGTCTT+GGG | + | chr4_1:78690364-78690383 | None:intergenic | 40.0% | |
| ATGCCATCATTTGCAAGTCT+TGG | + | chr4_1:78690365-78690384 | None:intergenic | 40.0% | |
| TTTCAAATACGGTGGAAGAG+AGG | + | chr4_1:78690424-78690443 | None:intergenic | 40.0% | |
| ! | TCGACTTGACATCAGATTTC+AGG | - | chr4_1:78690572-78690591 | Msa0574940:CDS | 40.0% |
| TTCAGGCTCAAATTCTGCAA+AGG | - | chr4_1:78690589-78690608 | Msa0574940:CDS | 40.0% | |
| ! | AAAAGAGAGTTTTCTGTGCC+AGG | - | chr4_1:78690646-78690665 | Msa0574940:CDS | 40.0% |
| ! | GTCAACGGAGACATCTTTTA+TGG | + | chr4_1:78690680-78690699 | None:intergenic | 40.0% |
| !! | TGACGGATTGATAACGTGTA+CGG | + | chr4_1:78690723-78690742 | None:intergenic | 40.0% |
| GAGGGTAGTAAAGTCTATCA+TGG | + | chr4_1:78690945-78690964 | None:intergenic | 40.0% | |
| !! | TGATTGAGATTTGGGTTGTG+TGG | - | chr4_1:78691018-78691037 | Msa0574940:CDS | 40.0% |
| ATACCTGGGAAAATACCAAG+TGG | - | chr4_1:78691083-78691102 | Msa0574940:intron | 40.0% | |
| TACCTGGGAAAATACCAAGT+GGG | - | chr4_1:78691084-78691103 | Msa0574940:intron | 40.0% | |
| ! | GCAGCTAACACAAAGTGTTT+AGG | - | chr4_1:78691155-78691174 | Msa0574940:intron | 40.0% |
| TTCAAGCTGTTCCTTCTTCA+TGG | - | chr4_1:78691252-78691271 | Msa0574940:intron | 40.0% | |
| TCAAGCTGTTCCTTCTTCAT+GGG | - | chr4_1:78691253-78691272 | Msa0574940:intron | 40.0% | |
| GGTACATAGTATTTGGTACG+TGG | + | chr4_1:78691413-78691432 | None:intergenic | 40.0% | |
| AACCACAACCAGTAAAAGTG+GGG | + | chr4_1:78691509-78691528 | None:intergenic | 40.0% | |
| CAACCACAACCAGTAAAAGT+GGG | + | chr4_1:78691510-78691529 | None:intergenic | 40.0% | |
| TCAACCACAACCAGTAAAAG+TGG | + | chr4_1:78691511-78691530 | None:intergenic | 40.0% | |
| ACATACAATCCAAATTCCCG+CGG | - | chr4_1:78691828-78691847 | Msa0574940:intron | 40.0% | |
| TGTAGGTGAAACCATGTTGA+TGG | - | chr4_1:78691856-78691875 | Msa0574940:intron | 40.0% | |
| GTAGGTGAAACCATGTTGAT+GGG | - | chr4_1:78691857-78691876 | Msa0574940:intron | 40.0% | |
| !! | TGAAACCATGTTGATGGGTT+AGG | - | chr4_1:78691862-78691881 | Msa0574940:intron | 40.0% |
| TGTTACCTAACCCATCAACA+TGG | + | chr4_1:78691870-78691889 | None:intergenic | 40.0% | |
| !! | TGTTGATGGGTTAGGTAACA+TGG | - | chr4_1:78691870-78691889 | Msa0574940:intron | 40.0% |
| CTCCGTTAACTTAACTTAGC+TGG | - | chr4_1:78692106-78692125 | Msa0574940:intron | 40.0% | |
| TTGAGTAGGGACTAATACTC+AGG | - | chr4_1:78693253-78693272 | Msa0574940:intron | 40.0% | |
| TGAGTAGGGACTAATACTCA+GGG | - | chr4_1:78693254-78693273 | Msa0574940:intron | 40.0% | |
| AAATATACCCACTTGCAAGG+AGG | - | chr4_1:78693653-78693672 | Msa0574940:intron | 40.0% | |
| ! | AAGTGATTCTTGAGCTCTGA+TGG | + | chr4_1:78694107-78694126 | None:intergenic | 40.0% |
| ATCAGAGCTCAAGAATCACT+TGG | - | chr4_1:78694106-78694125 | Msa0574940:intron | 40.0% | |
| !! | GGTGTTGCTTGCATAACTTT+AGG | + | chr4_1:78694231-78694250 | None:intergenic | 40.0% |
| CCATTGAACGCAACAATTTG+CGG | + | chr4_1:78694559-78694578 | None:intergenic | 40.0% | |
| TTCTTTCGAAATGGTGCTCT+TGG | - | chr4_1:78694654-78694673 | Msa0574940:intron | 40.0% | |
| GTAATATGTGTAAAGAGGGG+AGG | - | chr4_1:78694752-78694771 | Msa0574940:intron | 40.0% | |
| AATATGTGTAAAGAGGGGAG+GGG | - | chr4_1:78694754-78694773 | Msa0574940:intron | 40.0% | |
| ! | CCTTTAAGAAGAGAGGTGAT+GGG | + | chr4_1:78694857-78694876 | None:intergenic | 40.0% |
| ! | ACCTTTAAGAAGAGAGGTGA+TGG | + | chr4_1:78694858-78694877 | None:intergenic | 40.0% |
| !! | GAAGATAAAGGTTGATGGCA+TGG | + | chr4_1:78694904-78694923 | None:intergenic | 40.0% |
| TAAACCTTGTGTTGTGTGCT+TGG | + | chr4_1:78695116-78695135 | None:intergenic | 40.0% | |
| TTGAGCACGTTCTCAATTCT+TGG | - | chr4_1:78695177-78695196 | Msa0574940:intron | 40.0% | |
| ACTACCAAGGATACAAGCTT+TGG | - | chr4_1:78695278-78695297 | Msa0574940:intron | 40.0% | |
| CTACCAAGGATACAAGCTTT+GGG | - | chr4_1:78695279-78695298 | Msa0574940:intron | 40.0% | |
| AGAGGTAGATCATTGTGAAC+AGG | + | chr4_1:78695307-78695326 | None:intergenic | 40.0% | |
| GTTCACAATGATCTACCTCT+TGG | - | chr4_1:78695307-78695326 | Msa0574940:intron | 40.0% | |
| ATGTTTGTACTTGGACCAAG+AGG | + | chr4_1:78695325-78695344 | None:intergenic | 40.0% | |
| AACAAACGCATACCTGTGAT+TGG | + | chr4_1:78695528-78695547 | None:intergenic | 40.0% | |
| ! | GGTATGCGTTTGTTTCTTGA+AGG | - | chr4_1:78695534-78695553 | Msa0574940:intron | 40.0% |
| !! | TTAGGAGCCTTGTTAGCATA+TGG | - | chr4_1:78695712-78695731 | Msa0574940:CDS | 40.0% |
| AATTGGACAAAGGGTTCTTC+TGG | - | chr4_1:78696089-78696108 | Msa0574940:CDS | 40.0% | |
| GACACGTCAGAGTTATGTAA+AGG | - | chr4_1:78696266-78696285 | Msa0574940:CDS | 40.0% | |
| !! | GGCAAAATTGGTGATGGATA+AGG | - | chr4_1:78696325-78696344 | Msa0574940:five_prime_UTR | 40.0% |
| GAGAAAGCTCTTAGCAGCTT+AGG | - | chr4_1:78690541-78690560 | Msa0574940:CDS | 45.0% | |
| GCTCTTAGCAGCTTAGGAAA+AGG | - | chr4_1:78690547-78690566 | Msa0574940:CDS | 45.0% | |
| ! | GAGTTTTCTGTGCCAGGTTT+TGG | - | chr4_1:78690652-78690671 | Msa0574940:CDS | 45.0% |
| GAATCAGCTTACTTGGGTGA+AGG | + | chr4_1:78690752-78690771 | None:intergenic | 45.0% | |
| ! | TACCCACTTGGTATTTTCCC+AGG | + | chr4_1:78691089-78691108 | None:intergenic | 45.0% |
| TTGGGTTTGATGAGGGTTCA+TGG | - | chr4_1:78691123-78691142 | Msa0574940:intron | 45.0% | |
| TGGGTTTGATGAGGGTTCAT+GGG | - | chr4_1:78691124-78691143 | Msa0574940:intron | 45.0% | |
| TACATGTTACCGCGGGAATT+TGG | + | chr4_1:78691840-78691859 | None:intergenic | 45.0% | |
| AAATTCCCGCGGTAACATGT+AGG | - | chr4_1:78691839-78691858 | Msa0574940:intron | 45.0% | |
| TTTCACCTACATGTTACCGC+GGG | + | chr4_1:78691847-78691866 | None:intergenic | 45.0% | |
| GTTTCACCTACATGTTACCG+CGG | + | chr4_1:78691848-78691867 | None:intergenic | 45.0% | |
| ! | TTTGGGACTCACATCCTTGT+GGG | - | chr4_1:78694020-78694039 | Msa0574940:intron | 45.0% |
| ATCCTTGTGGGTCTTAGCAT+TGG | - | chr4_1:78694032-78694051 | Msa0574940:intron | 45.0% | |
| ! | TTGTGGGTCTTAGCATTGGA+GGG | - | chr4_1:78694036-78694055 | Msa0574940:intron | 45.0% |
| CAAGACGTGTCTTCCAACTT+GGG | - | chr4_1:78694080-78694099 | Msa0574940:intron | 45.0% | |
| TTGCGGACCAAAGACATCAA+AGG | + | chr4_1:78694542-78694561 | None:intergenic | 45.0% | |
| CCGCAAATTGTTGCGTTCAA+TGG | - | chr4_1:78694556-78694575 | Msa0574940:intron | 45.0% | |
| TTCATTGTGGCTGCTCACTT+GGG | + | chr4_1:78694783-78694802 | None:intergenic | 45.0% | |
| ATTCATTGTGGCTGCTCACT+TGG | + | chr4_1:78694784-78694803 | None:intergenic | 45.0% | |
| AAGTGAGCAGCCACAATGAA+TGG | - | chr4_1:78694783-78694802 | Msa0574940:intron | 45.0% | |
| CCCATCACCTCTCTTCTTAA+AGG | - | chr4_1:78694854-78694873 | Msa0574940:intron | 45.0% | |
| !! | AGGAGCACCTTTAAGAAGAG+AGG | + | chr4_1:78694864-78694883 | None:intergenic | 45.0% |
| !! | TCTCTTCTTAAAGGTGCTCC+TGG | - | chr4_1:78694863-78694882 | Msa0574940:intron | 45.0% |
| ACTTCCAAGCACACAACACA+AGG | - | chr4_1:78695109-78695128 | Msa0574940:intron | 45.0% | |
| TACAAGGATGTTGCTGACAC+AGG | - | chr4_1:78695766-78695785 | Msa0574940:CDS | 45.0% | |
| !! | CACTGGTGCTGTACATACAT+GGG | + | chr4_1:78695922-78695941 | None:intergenic | 45.0% |
| !! | TCACTGGTGCTGTACATACA+TGG | + | chr4_1:78695923-78695942 | None:intergenic | 45.0% |
| CAAAGAGAGTCCTACATCTG+AGG | - | chr4_1:78696024-78696043 | Msa0574940:intron | 45.0% | |
| TCTGGATTGTCCCAGAAATC+TGG | - | chr4_1:78696107-78696126 | Msa0574940:CDS | 45.0% | |
| ! | TGTGTTTGTACTGGTACTGG+AGG | + | chr4_1:78696227-78696246 | None:intergenic | 45.0% |
| AATGACCTGGAGTGTGTTGT+GGG | + | chr4_1:78696292-78696311 | None:intergenic | 45.0% | |
| ! | CAGGTCATTGGTTGGTTACT+GGG | - | chr4_1:78696303-78696322 | Msa0574940:CDS | 45.0% |
| ! | AGGTCATTGGTTGGTTACTG+GGG | - | chr4_1:78696304-78696323 | Msa0574940:CDS | 45.0% |
| GTTGGTTACTGGGGCAAAAT+TGG | - | chr4_1:78696313-78696332 | Msa0574940:exon | 45.0% | |
| TACTGGGGCAAAATTGGTGA+TGG | - | chr4_1:78696319-78696338 | Msa0574940:exon | 45.0% | |
| !! | TTTATATTAAATTACATATT+TGG | + | chr4_1:78691351-78691370 | None:intergenic | 5.0% |
| !!! | TATTTTTTACTATTTTAAAT+AGG | - | chr4_1:78691756-78691775 | Msa0574940:intron | 5.0% |
| !!! | ATTTTTTACTATTTTAAATA+GGG | - | chr4_1:78691757-78691776 | Msa0574940:intron | 5.0% |
| !!! | TAATTTGATAAATTTTATTT+TGG | - | chr4_1:78692813-78692832 | Msa0574940:CDS | 5.0% |
| !!! | AATTTGATAAATTTTATTTT+GGG | - | chr4_1:78692814-78692833 | Msa0574940:CDS | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | + | chr4_1:78692917-78692936 | None:intergenic | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | + | chr4_1:78692918-78692937 | None:intergenic | 5.0% |
| !!! | TTAAATAAATTGATTTTTAT+AGG | - | chr4_1:78693892-78693911 | Msa0574940:intron | 5.0% |
| !!! | CTTTTTATATATTTTTTATT+TGG | + | chr4_1:78696410-78696429 | None:intergenic | 5.0% |
| !! | ATAAAAAATATATAAAAAGA+AGG | - | chr4_1:78696411-78696430 | Msa0574940:five_prime_UTR | 5.0% |
| TTGGGTGAAGGTGAGGATGA+CGG | + | chr4_1:78690740-78690759 | None:intergenic | 50.0% | |
| AGCTTACTTGGGTGAAGGTG+AGG | + | chr4_1:78690747-78690766 | None:intergenic | 50.0% | |
| !! | GTCCCCACTTTTACTGGTTG+TGG | - | chr4_1:78691504-78691523 | Msa0574940:CDS | 50.0% |
| ACCCACTTGCAAGGAGGATA+TGG | - | chr4_1:78693659-78693678 | Msa0574940:intron | 50.0% | |
| CCCATATCCTCCTTGCAAGT+GGG | + | chr4_1:78693663-78693682 | None:intergenic | 50.0% | |
| CCCACTTGCAAGGAGGATAT+GGG | - | chr4_1:78693660-78693679 | Msa0574940:intron | 50.0% | |
| CCACTTGCAAGGAGGATATG+GGG | - | chr4_1:78693661-78693680 | Msa0574940:intron | 50.0% | |
| !! | CTTTGGGACTCACATCCTTG+TGG | - | chr4_1:78694019-78694038 | Msa0574940:intron | 50.0% |
| CTCCAATGCTAAGACCCACA+AGG | + | chr4_1:78694037-78694056 | None:intergenic | 50.0% | |
| ! | CTTGTGGGTCTTAGCATTGG+AGG | - | chr4_1:78694035-78694054 | Msa0574940:intron | 50.0% |
| GCAAGACGTGTCTTCCAACT+TGG | - | chr4_1:78694079-78694098 | Msa0574940:intron | 50.0% | |
| CGGACCAAAGACATCAAAGG+CGG | + | chr4_1:78694539-78694558 | None:intergenic | 50.0% | |
| CTGTGAGCAGCCATTCATTG+TGG | + | chr4_1:78694796-78694815 | None:intergenic | 50.0% | |
| !! | TTCTTAAAGGTGCTCCTGGC+AGG | - | chr4_1:78694867-78694886 | Msa0574940:intron | 50.0% |
| !! | TCTTAAAGGTGCTCCTGGCA+GGG | - | chr4_1:78694868-78694887 | Msa0574940:intron | 50.0% |
| !! | AAAGGTTGATGGCATGGGAG+AGG | + | chr4_1:78694898-78694917 | None:intergenic | 50.0% |
| GAGCCCAAAGCTTGTATCCT+TGG | + | chr4_1:78695285-78695304 | None:intergenic | 50.0% | |
| GTTGGCAAAAGGCCAATCAC+AGG | - | chr4_1:78695513-78695532 | Msa0574940:intron | 50.0% | |
| AGGCTCCTAATCGTAGCAGT+TGG | + | chr4_1:78695702-78695721 | None:intergenic | 50.0% | |
| ! | ACACAGGTTAGCCATACACG+TGG | - | chr4_1:78695782-78695801 | Msa0574940:intron | 50.0% |
| CAATGACCTGGAGTGTGTTG+TGG | + | chr4_1:78696293-78696312 | None:intergenic | 50.0% | |
| CACAACACACTCCAGGTCAT+TGG | - | chr4_1:78696291-78696310 | Msa0574940:CDS | 50.0% | |
| ACACACTCCAGGTCATTGGT+TGG | - | chr4_1:78696295-78696314 | Msa0574940:CDS | 50.0% | |
| CCAGTAACCAACCAATGACC+TGG | + | chr4_1:78696305-78696324 | None:intergenic | 50.0% | |
| ! | CCAGGTCATTGGTTGGTTAC+TGG | - | chr4_1:78696302-78696321 | Msa0574940:CDS | 50.0% |
| GCAGGAGGATCCCATGAAGA+AGG | + | chr4_1:78691266-78691285 | None:intergenic | 55.0% | |
| !! | TGAGGGTACCTTGCAAGTGC+AGG | + | chr4_1:78691284-78691303 | None:intergenic | 55.0% |
| CCCCATATCCTCCTTGCAAG+TGG | + | chr4_1:78693664-78693683 | None:intergenic | 55.0% | |
| ! | GAGCTCTGATGGTCCCAAGT+TGG | + | chr4_1:78694096-78694115 | None:intergenic | 55.0% |
| CCAAAGACATCAAAGGCGGC+TGG | + | chr4_1:78694535-78694554 | None:intergenic | 55.0% | |
| CCAGCCGCCTTTGATGTCTT+TGG | - | chr4_1:78694532-78694551 | Msa0574940:intron | 55.0% | |
| !! | CTTAAAGGTGCTCCTGGCAG+GGG | - | chr4_1:78694869-78694888 | Msa0574940:intron | 55.0% |
| ! | ACTGGTACTGGAGGTCCTGT+TGG | + | chr4_1:78696218-78696237 | None:intergenic | 55.0% |
| AAAGGCCCACAACACACTCC+AGG | - | chr4_1:78696284-78696303 | Msa0574940:CDS | 55.0% | |
| GGGATCCTCCTGCACTTGCA+AGG | - | chr4_1:78691273-78691292 | Msa0574940:intron | 60.0% | |
| GGGTACCTTGCAAGTGCAGG+AGG | + | chr4_1:78691281-78691300 | None:intergenic | 60.0% | |
| AAAAGTGGGGACACGCCCGT+AGG | + | chr4_1:78691496-78691515 | None:intergenic | 60.0% | |
| !! | GGGCGTGTCCCCACTTTTAC+TGG | - | chr4_1:78691498-78691517 | Msa0574940:CDS | 60.0% |
| TGGGAGAGGAATCCCCTGCC+AGG | + | chr4_1:78694884-78694903 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78690264 | 78696583 | 78690264 | ID=Msa0574940;Name=Msa0574940 |
| chr4_1 | mRNA | 78690264 | 78696583 | 78690264 | ID=Msa0574940-mRNA-1;Parent=Msa0574940;Name=Msa0574940-mRNA-1;_AED=0.09;_eAED=0.09;_QI=259|1|1|1|1|1|8|186|591 |
| chr4_1 | exon | 78690264 | 78691059 | 78690264 | ID=Msa0574940-mRNA-1:exon:27975;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78691276 | 78691340 | 78691276 | ID=Msa0574940-mRNA-1:exon:27974;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78691436 | 78691605 | 78691436 | ID=Msa0574940-mRNA-1:exon:27973;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78691921 | 78692104 | 78691921 | ID=Msa0574940-mRNA-1:exon:27972;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78692244 | 78692318 | 78692244 | ID=Msa0574940-mRNA-1:exon:27971;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78692648 | 78692840 | 78692648 | ID=Msa0574940-mRNA-1:exon:27970;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78695553 | 78695794 | 78695553 | ID=Msa0574940-mRNA-1:exon:27969;Parent=Msa0574940-mRNA-1 |
| chr4_1 | exon | 78696088 | 78696583 | 78696088 | ID=Msa0574940-mRNA-1:exon:27968;Parent=Msa0574940-mRNA-1 |
| chr4_1 | five_prime_UTR | 78696325 | 78696583 | 78696325 | ID=Msa0574940-mRNA-1:five_prime_utr;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78696088 | 78696324 | 78696088 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78695553 | 78695794 | 78695553 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78692648 | 78692840 | 78692648 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78692244 | 78692318 | 78692244 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78691921 | 78692104 | 78691921 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78691436 | 78691605 | 78691436 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78691276 | 78691340 | 78691276 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | CDS | 78690450 | 78691059 | 78690450 | ID=Msa0574940-mRNA-1:cds;Parent=Msa0574940-mRNA-1 |
| chr4_1 | three_prime_UTR | 78690264 | 78690449 | 78690264 | ID=Msa0574940-mRNA-1:three_prime_utr;Parent=Msa0574940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
