AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0930730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930730 MtrunA17_Chr8g0391931 91.047 592 10 2 1 549 1 592 0.0 1088
Msa0930730 MtrunA17_Chr3g0122211 44.152 607 269 9 7 546 15 618 5.82e-174 505
Msa0930730 MtrunA17_Chr2g0277061 47.148 596 255 12 5 549 11 597 7.89e-173 502
Msa0930730 MtrunA17_Chr8g0377631 43.366 618 275 10 1 546 3 617 1.07e-170 497
Msa0930730 MtrunA17_Chr8g0385121 44.162 591 275 9 6 549 10 592 1.33e-157 462
Msa0930730 MtrunA17_Chr4g0046841 40.604 596 292 10 6 545 22 611 1.52e-139 417
Msa0930730 MtrunA17_Chr2g0284691 41.681 571 273 14 9 546 22 565 1.44e-126 382
Msa0930730 MtrunA17_Chr4g0013011 36.594 593 298 10 9 546 14 583 4.48e-118 360
Msa0930730 MtrunA17_Chr8g0385131 38.732 568 306 11 6 546 13 565 3.33e-116 355
Msa0930730 MtrunA17_Chr8g0385181 38.366 563 302 10 6 546 13 552 8.30e-114 349
Msa0930730 MtrunA17_Chr8g0385171 38.776 294 135 8 6 269 13 291 6.29e-54 184
Msa0930730 MtrunA17_Chr8g0385161 36.630 273 142 4 273 545 1 242 8.11e-45 159
Msa0930730 MtrunA17_Chr7g0274871 39.695 131 70 5 7 135 128 251 1.13e-19 89.4
Msa0930730 MtrunA17_Chr8g0385141 53.125 64 30 0 120 183 20 83 8.14e-16 75.5
Msa0930730 MtrunA17_Chr8g0385151 57.447 47 20 0 224 270 2 48 1.64e-12 62.4
Msa0930730 MtrunA17_Chr7g0274901 42.353 85 48 1 315 398 1 85 1.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0930730 AT1G14780.1 54.072 614 208 10 5 546 8 619 0.0 665
Msa0930730 AT4G24290.2 45.085 590 265 11 6 545 11 591 1.42e-162 476
Msa0930730 AT4G24290.3 45.085 590 265 11 6 545 11 591 1.42e-162 476
Msa0930730 AT1G28380.1 42.353 595 282 10 6 545 15 603 7.30e-145 431
Msa0930730 AT1G29690.1 39.437 568 289 9 6 546 21 560 2.57e-130 392
Msa0930730 AT4G24290.1 44.586 314 125 7 6 271 11 323 1.71e-72 235

Find 145 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAGAAAATTCCAGATTTC+TGG 0.083759 6_2:-79812335 None:intergenic
CCAGGTCATTGGTTGGTTAC+TGG 0.132677 6_2:+79812519 Msa0930730:CDS
CCCATCACCTCTCTTCTTAA+AGG 0.136687 6_2:+79811070 Msa0930730:CDS
CGTTTCTTTGAAGCAATAAA+TGG 0.146797 6_2:+79812102 Msa0930730:CDS
GGGTATTTCAATACAGTATT+TGG 0.161336 6_2:+79807846 Msa0930730:CDS
TCCCCTCTTTACACATATTA+TGG 0.199778 6_2:-79810966 None:intergenic
TCGACTTGACATCAGATTTC+AGG 0.226789 6_2:+79807334 Msa0930730:CDS
ATCGGTATTTACATAAAGTT+TGG 0.231358 6_2:-79811605 None:intergenic
GAGCTTTCTGTGCCAGGTTT+TGG 0.247637 6_2:+79807414 Msa0930730:CDS
AATTGGACAAAGGGTTCTTC+TGG 0.255985 6_2:+79812306 Msa0930730:CDS
TACTGTATATCCTAACAAAT+TGG 0.278849 6_2:+79812723 Msa0930730:three_prime_UTR
CAGGTCATTGGTTGGTTACT+GGG 0.281666 6_2:+79812520 Msa0930730:CDS
TCAATAGCATCTGGTTTGTT+AGG 0.287722 6_2:-79811034 None:intergenic
GTTGGTTACTGGGGCAAAAT+TGG 0.294384 6_2:+79812530 Msa0930730:CDS
TTCAAGCTGTTCCTTCTTCA+TGG 0.298007 6_2:+79807994 Msa0930730:CDS
TCTGGATTGTCCCAGAAATC+TGG 0.299066 6_2:+79812324 Msa0930730:CDS
CCAGCCGCCTTTGATGTCTT+TGG 0.299845 6_2:+79810748 Msa0930730:CDS
TCTGAGGTTATTGTTCTCTA+AGG 0.301320 6_2:+79812257 Msa0930730:CDS
GAAAATCAAACATACCTTAT+CGG 0.325614 6_2:-79811623 None:intergenic
CAGTGAAATACAATCCTAAA+TGG 0.326415 6_2:+79812154 Msa0930730:CDS
TTCTTAAAGGTGCTCCTGGC+AGG 0.337014 6_2:+79811083 Msa0930730:CDS
TTAGAAAGAAGAAGTGGATA+TGG 0.339600 6_2:-79807963 None:intergenic
ATGCCATCATTTGCAAGTCT+TGG 0.340388 6_2:-79807124 None:intergenic
TTTCTCACTCTCAATTTAAT+GGG 0.346071 6_2:+79811580 Msa0930730:CDS
TCAGATTCATCGAGAACTTT+GGG 0.359267 6_2:+79810223 Msa0930730:intron
ATTCACTGTGGCTGCTCACT+TGG 0.359395 6_2:-79810997 None:intergenic
GTTGACATTAAATGTGATAA+AGG 0.365745 6_2:+79807456 Msa0930730:CDS
ACAAAGTGTTTAGGTATTGA+TGG 0.367267 6_2:+79807906 Msa0930730:CDS
GGCAAAATTGGTGATGGATA+AGG 0.367412 6_2:+79812542 Msa0930730:CDS
TTGGGTTTGATGAGGGTTCA+TGG 0.369436 6_2:+79807865 Msa0930730:CDS
TGCCATCATTTGCAAGTCTT+GGG 0.374914 6_2:-79807123 None:intergenic
TGAGAAAATTCCAGATTTCT+GGG 0.378202 6_2:-79812334 None:intergenic
CATTTAGGATTGTATTTCAC+TGG 0.381293 6_2:-79812153 None:intergenic
CTATATATATCCAATTTGTT+AGG 0.382239 6_2:-79812733 None:intergenic
CTAACAAATTGGATATATAT+AGG 0.383397 6_2:+79812734 Msa0930730:three_prime_UTR
GCAATAAGCACATCAATATC+TGG 0.384136 6_2:+79812357 Msa0930730:CDS
TAATAGATGTTCCACGTGTA+TGG 0.390541 6_2:-79812010 None:intergenic
GGTATTTCAATACAGTATTT+GGG 0.391201 6_2:+79807847 Msa0930730:CDS
CCGCAAATTGTTGCGTTCAA+TGG 0.394225 6_2:+79810772 Msa0930730:CDS
GCAAAATTGGTGATGGATAA+GGG 0.394648 6_2:+79812543 Msa0930730:CDS
TAAACTTACATCGAAGATAA+AGG 0.397739 6_2:-79811129 None:intergenic
ATCAGATTCATCGAGAACTT+TGG 0.399107 6_2:+79810222 Msa0930730:intron
GCAGCTAACACAAAGTGTTT+AGG 0.401057 6_2:+79807897 Msa0930730:CDS
AAAAGAGAGCTTTCTGTGCC+AGG 0.411773 6_2:+79807408 Msa0930730:CDS
ACTACCAAGGATACAAGCTT+TGG 0.419053 6_2:+79811497 Msa0930730:CDS
GTTAAATCAAATTGGACAAA+GGG 0.419356 6_2:+79812297 Msa0930730:CDS
TATCTCTAGTTGTATTATAG+AGG 0.429857 6_2:+79812770 Msa0930730:three_prime_UTR
TCAAGCTGTTCCTTCTTCAT+GGG 0.432632 6_2:+79807995 Msa0930730:CDS
TCGGTATTTACATAAAGTTT+GGG 0.433680 6_2:-79811604 None:intergenic
CCATTGAACGCAACAATTTG+CGG 0.434084 6_2:-79810772 None:intergenic
TTGAAGGAATGAAATGCAAC+AGG 0.437435 6_2:+79811775 Msa0930730:CDS
TTTGGGACTCACATCCTTGT+GGG 0.445545 6_2:+79810240 Msa0930730:CDS
CTTAAAGGTGCTCCTGGCAG+GGG 0.451189 6_2:+79811085 Msa0930730:CDS
GAGAAAGCTCTTAACAGCTT+AGG 0.455731 6_2:+79807303 Msa0930730:CDS
GAGCCCAAAGCTTGTATCCT+TGG 0.456844 6_2:-79811501 None:intergenic
CACAACACACTCCAGGTCAT+TGG 0.460697 6_2:+79812508 Msa0930730:CDS
CTACCAAGGATACAAGCTTT+GGG 0.463104 6_2:+79811498 Msa0930730:CDS
GGTATGCGTTTGTTTCTTGA+AGG 0.467322 6_2:+79811759 Msa0930730:CDS
ATCCTTGTGGGTCTTAGCGT+TGG 0.468179 6_2:+79810252 Msa0930730:CDS
AAATTGAAGACACAACAATA+TGG 0.471714 6_2:+79812058 Msa0930730:CDS
TCACTGGTGCTGTACATACA+TGG 0.473147 6_2:-79812137 None:intergenic
AGATGTCAGAGTTATTCAAT+AGG 0.474106 6_2:+79807793 Msa0930730:intron
AAGCTAAAATCAATAGCATC+TGG 0.475726 6_2:-79811043 None:intergenic
TCTCTTCTTAAAGGTGCTCC+TGG 0.475934 6_2:+79811079 Msa0930730:CDS
CTTGTGGGTCTTAGCGTTGG+AGG 0.478506 6_2:+79810255 Msa0930730:CDS
GCTCTTAACAGCTTAGGAAA+AGG 0.479625 6_2:+79807309 Msa0930730:CDS
TGGGTTTGATGAGGGTTCAT+GGG 0.483693 6_2:+79807866 Msa0930730:CDS
AGAGGTAGATCATTGTGAAC+AGG 0.483745 6_2:-79811523 None:intergenic
ATAGTAGATATGTTTGTACT+TGG 0.484397 6_2:-79811550 None:intergenic
TCTTAAAGGTGCTCCTGGCA+GGG 0.485486 6_2:+79811084 Msa0930730:CDS
TGGAGGGAAAGATTTATTGT+TGG 0.488064 6_2:+79810272 Msa0930730:CDS
ACCTTTAAGAAGAGAGGTGA+TGG 0.490856 6_2:-79811071 None:intergenic
TGTATTATAGAGGTAGTCAT+AGG 0.492994 6_2:+79812780 Msa0930730:three_prime_UTR
AACCATAATATGTGTAAAGA+GGG 0.493169 6_2:+79810964 Msa0930730:CDS
AACAAACGCATACCTGTGAT+TGG 0.494939 6_2:-79811750 None:intergenic
TGGGAGAGGAATCCCCTGCC+AGG 0.495127 6_2:-79811097 None:intergenic
AGTATTTAACAAAGAAAACT+TGG 0.495296 6_2:-79812583 None:intergenic
AACCCAAGACTTGCAAATGA+TGG 0.495833 6_2:+79807121 Msa0930730:five_prime_UTR
AAGTGAGCAGCCACAGTGAA+TGG 0.496362 6_2:+79810999 Msa0930730:CDS
AATAGGTAACAGTTGGCAAA+AGG 0.508024 6_2:+79811727 Msa0930730:intron
GTTTCTTTGAAGCAATAAAT+GGG 0.508479 6_2:+79812103 Msa0930730:CDS
AATGTGGCATTTATTGTCAC+AGG 0.509386 6_2:+79812189 Msa0930730:CDS
GTTCACAATGATCTACCTCT+TGG 0.514768 6_2:+79811526 Msa0930730:CDS
TAACCATAATATGTGTAAAG+AGG 0.516257 6_2:+79810963 Msa0930730:CDS
AAAGGTTGATAGCATGGGAG+AGG 0.517621 6_2:-79811111 None:intergenic
TGAGGGTACCTTGCAAGTGC+AGG 0.522200 6_2:-79808023 None:intergenic
TTTATCACATTTAATGTCAA+CGG 0.522581 6_2:-79807454 None:intergenic
TTCACTGTGGCTGCTCACTT+GGG 0.522829 6_2:-79810996 None:intergenic
ACTTTATGTAAATACCGATA+AGG 0.523405 6_2:+79811609 Msa0930730:CDS
GAAGATAAAGGTTGATAGCA+TGG 0.525392 6_2:-79811117 None:intergenic
ATTAAATTGAGAGTGAGAAA+AGG 0.536310 6_2:-79811577 None:intergenic
TACAGTATTTGGGTTTGATG+AGG 0.536814 6_2:+79807857 Msa0930730:CDS
TAATATGTGTAAAGAGGGGA+GGG 0.538133 6_2:+79810969 Msa0930730:CDS
ACTTGTTTAGAAAGAAGAAG+TGG 0.538346 6_2:-79807969 None:intergenic
AATGACCTGGAGTGTGTTGT+GGG 0.542683 6_2:-79812506 None:intergenic
TGTTAAATCAAATTGGACAA+AGG 0.543051 6_2:+79812296 Msa0930730:CDS
TACTGGGGCAAAATTGGTGA+TGG 0.545267 6_2:+79812536 Msa0930730:CDS
CAATGACCTGGAGTGTGTTG+TGG 0.547306 6_2:-79812507 None:intergenic
CACTCATAATAGGTAACAGT+TGG 0.547417 6_2:+79811720 Msa0930730:intron
ACAGTATTTGGGTTTGATGA+GGG 0.549123 6_2:+79807858 Msa0930730:CDS
AGGTCATTGGTTGGTTACTG+GGG 0.549188 6_2:+79812521 Msa0930730:CDS
ACTGGTACTGGAGGTCCTGT+TGG 0.553126 6_2:-79812432 None:intergenic
CCAGTAACCAACCAATGACC+TGG 0.556235 6_2:-79812519 None:intergenic
TTGTGGGTCTTAGCGTTGGA+GGG 0.560685 6_2:+79810256 Msa0930730:CDS
AGCTTACTTGGGTGAAGGTG+AGG 0.562983 6_2:-79807506 None:intergenic
TATGACAAATCTGACATTGG+TGG 0.565630 6_2:-79811466 None:intergenic
TAAGGGTAAGATATGTTTGT+GGG 0.567929 6_2:+79812560 Msa0930730:CDS
GCAGGAGGATCCCATGAAGA+AGG 0.570234 6_2:-79808005 None:intergenic
TTGGGTGAAGGTGAGGATGT+CGG 0.578922 6_2:-79807499 None:intergenic
AATAGGAAGAGTTCAATACC+TGG 0.578976 6_2:+79807810 Msa0930730:CDS
CACTGGTGCTGTACATACAT+GGG 0.579155 6_2:-79812136 None:intergenic
ATAAGGGTAAGATATGTTTG+TGG 0.580444 6_2:+79812559 Msa0930730:CDS
AAGATAAAGGTTGATAGCAT+GGG 0.580624 6_2:-79811116 None:intergenic
CTTTGGGACTCACATCCTTG+TGG 0.581257 6_2:+79810239 Msa0930730:CDS
GGGATCCTCCTGCACTTGCA+AGG 0.582684 6_2:+79808015 Msa0930730:CDS
CCAAAGACATCAAAGGCGGC+TGG 0.585919 6_2:-79810748 None:intergenic
TTCAGGCTCAAATTCTGCAA+AGG 0.587756 6_2:+79807351 Msa0930730:CDS
GACACGTCAGAGTTATGTAA+AGG 0.587773 6_2:+79812483 Msa0930730:CDS
AGAACAATAACCTCAGATGT+AGG 0.590181 6_2:-79812251 None:intergenic
GTTGGCAAAAGGCCAATCAC+AGG 0.591185 6_2:+79811738 Msa0930730:CDS
TTTCAAATACGGTGGAAGAG+AGG 0.591544 6_2:-79807183 None:intergenic
AGGAGCACCTTTAAGAAGAG+AGG 0.595422 6_2:-79811077 None:intergenic
ATAATATGTGTAAAGAGGGG+AGG 0.601048 6_2:+79810968 Msa0930730:CDS
GAATCAGCTTACTTGGGTGA+AGG 0.603291 6_2:-79807511 None:intergenic
ACACACTCCAGGTCATTGGT+TGG 0.604138 6_2:+79812512 Msa0930730:CDS
TGTGTTTGTACTGGTACTGG+AGG 0.618512 6_2:-79812441 None:intergenic
AAAGGCCCACAACACACTCC+AGG 0.619321 6_2:+79812501 Msa0930730:CDS
TCATACTTTCTTGACTACCA+AGG 0.625611 6_2:+79811484 Msa0930730:CDS
TTGCGGACCAAAGACATCAA+AGG 0.629078 6_2:-79810755 None:intergenic
GGGTACCTTGCAAGTGCAGG+AGG 0.630167 6_2:-79808020 None:intergenic
ATAGGAAGAGTTCAATACCT+GGG 0.632447 6_2:+79807811 Msa0930730:CDS
TGTCGGATTGATAACGTGTA+CGG 0.634359 6_2:-79807482 None:intergenic
ATGTTTGTACTTGGACCAAG+AGG 0.635000 6_2:-79811541 None:intergenic
CAAAGAGAGTCCTACATCTG+AGG 0.641177 6_2:+79812241 Msa0930730:CDS
ACTGTATTGAAATACCCACT+TGG 0.645812 6_2:-79807840 None:intergenic
AAGTATGACAAATCTGACAT+TGG 0.647643 6_2:-79811469 None:intergenic
CCTTTAAGAAGAGAGGTGAT+GGG 0.648998 6_2:-79811070 None:intergenic
TACCTGGGAAAATACCAAGT+GGG 0.650959 6_2:+79807826 Msa0930730:CDS
ACCATAATATGTGTAAAGAG+GGG 0.658232 6_2:+79810965 Msa0930730:CDS
CTCCAACGCTAAGACCCACA+AGG 0.680760 6_2:-79810254 None:intergenic
AATATGTGTAAAGAGGGGAG+GGG 0.680772 6_2:+79810970 Msa0930730:CDS
CGGACCAAAGACATCAAAGG+CGG 0.704708 6_2:-79810752 None:intergenic
ATACCTGGGAAAATACCAAG+TGG 0.723262 6_2:+79807825 Msa0930730:CDS
ACACAGGTTAGCCATACACG+TGG 0.725610 6_2:+79811999 Msa0930730:intron
CTGTGAGCAGCCATTCACTG+TGG 0.728210 6_2:-79811009 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAAAAATATGTTTTAAATA+TGG - chr6_2:79808516-79808535 None:intergenic 10.0%
!!! TTTTATGACTAATTTTTTTT+TGG + chr6_2:79808704-79808723 Msa0930730:intron 10.0%
!! AATCAATTAACAATATTAAT+GGG + chr6_2:79809405-79809424 Msa0930730:intron 10.0%
!!! CTATATTTACATTTTTTTTA+CGG + chr6_2:79809438-79809457 Msa0930730:intron 10.0%
!! TTAAATAAATTGATTGTTAT+AGG + chr6_2:79810109-79810128 Msa0930730:intron 10.0%
!! TATATATGAAAATTAAACTA+CGG - chr6_2:79810472-79810491 None:intergenic 10.0%
!! ATATTGTAAATTAATCATAA+CGG - chr6_2:79810605-79810624 None:intergenic 10.0%
!! ATTTAGAGATTAATTTATTT+AGG - chr6_2:79811166-79811185 None:intergenic 10.0%
!! AATCTCTAAATATTATAATA+TGG + chr6_2:79811175-79811194 Msa0930730:intron 10.0%
!!! TAAGTTTTTCTTTTCAAATA+CGG - chr6_2:79807197-79807216 None:intergenic 15.0%
!!! TTTTTCATATGATTGAAATT+TGG + chr6_2:79807751-79807770 Msa0930730:intron 15.0%
!!! TTTTCATATGATTGAAATTT+GGG + chr6_2:79807752-79807771 Msa0930730:intron 15.0%
!! TTGAAATAAGAAAGAAAAAA+AGG - chr6_2:79808058-79808077 None:intergenic 15.0%
!! TTATTTACTCAATATTAGAT+TGG + chr6_2:79808377-79808396 Msa0930730:intron 15.0%
!! ATTAATATAACTCATAAAGA+GGG - chr6_2:79808834-79808853 None:intergenic 15.0%
!! TATTAATATAACTCATAAAG+AGG - chr6_2:79808835-79808854 None:intergenic 15.0%
!! ATATAATATATGTAGAAGTA+TGG + chr6_2:79808917-79808936 Msa0930730:intron 15.0%
!! ATTTAGATCTATTATTATGT+GGG + chr6_2:79809178-79809197 Msa0930730:intron 15.0%
!!! TAATACGTTTTTTTTTTGTT+AGG + chr6_2:79809278-79809297 Msa0930730:intron 15.0%
!!! AATACGTTTTTTTTTTGTTA+GGG + chr6_2:79809279-79809298 Msa0930730:intron 15.0%
!! GAATCAATTAACAATATTAA+TGG + chr6_2:79809404-79809423 Msa0930730:intron 15.0%
!!! TTTTAAACGTGATTTAAAAA+TGG + chr6_2:79810545-79810564 Msa0930730:intron 15.0%
!!! TAATTTGATTTTGACAATTT+TGG + chr6_2:79811231-79811250 Msa0930730:intron 15.0%
!! TATAATAATACTATATGAAG+AGG - chr6_2:79811657-79811676 None:intergenic 15.0%
!! CTAAATGTATTATAACAATT+GGG + chr6_2:79811859-79811878 Msa0930730:intron 15.0%
!! AAAATATATAAAAAGAAGGA+AGG + chr6_2:79812632-79812651 Msa0930730:three_prime_UTR 15.0%
!!! CTTTTATTTTTTGATAAAAC+AGG + chr6_2:79812673-79812692 Msa0930730:three_prime_UTR 15.0%
!!! ATACTTCTTTCATTTTCATT+TGG + chr6_2:79807244-79807263 Msa0930730:five_prime_UTR 20.0%
!! GTCATAAAAACCAAAAAATA+TGG + chr6_2:79807266-79807285 Msa0930730:exon 20.0%
!! TTTATCACATTTAATGTCAA+CGG - chr6_2:79807457-79807476 None:intergenic 20.0%
!! TGTTAAGTTAATACGAAATT+CGG - chr6_2:79807714-79807733 None:intergenic 20.0%
!!! TCGTATTAACTTAACATTTT+TGG + chr6_2:79807718-79807737 Msa0930730:intron 20.0%
!! AAGAAAGACATTAATGTAAT+GGG - chr6_2:79808207-79808226 None:intergenic 20.0%
!! TTACCGTTAATTATACAATT+CGG + chr6_2:79808294-79808313 Msa0930730:intron 20.0%
!!! AAATAATTAGACAGTAGTTT+TGG + chr6_2:79808330-79808349 Msa0930730:intron 20.0%
!! GACGTTAAATCAAAATTATA+AGG + chr6_2:79808489-79808508 Msa0930730:intron 20.0%
!!! GTTAGAAATTCACTTTTTTA+AGG - chr6_2:79808971-79808990 None:intergenic 20.0%
!!! TCACTAATATTTTTTTCAAG+TGG - chr6_2:79809001-79809020 None:intergenic 20.0%
!! CATTGTTATAAACAAAAATG+AGG - chr6_2:79809037-79809056 None:intergenic 20.0%
!! CACATAATAATAGATCTAAA+TGG - chr6_2:79809179-79809198 None:intergenic 20.0%
!! CATTTAGATCTATTATTATG+TGG + chr6_2:79809177-79809196 Msa0930730:intron 20.0%
!! AAAAAAAAACGTATTACTAG+TGG - chr6_2:79809274-79809293 None:intergenic 20.0%
!!! ATACGTTTTTTTTTTGTTAG+GGG + chr6_2:79809280-79809299 Msa0930730:intron 20.0%
!!! AAATTTGTTGCAGAATATAT+TGG - chr6_2:79809774-79809793 None:intergenic 20.0%
!! ATATGCAAAAAATTCACTTT+AGG - chr6_2:79809823-79809842 None:intergenic 20.0%
!! ATAAATTGATTGTTATAGGA+AGG + chr6_2:79810113-79810132 Msa0930730:intron 20.0%
!! AGAACATAAATTAAGGATTA+AGG - chr6_2:79810184-79810203 None:intergenic 20.0%
!! TCTTTCAAGAACATAAATTA+AGG - chr6_2:79810191-79810210 None:intergenic 20.0%
!!! TGTTTCTGATCTTTATTTTT+GGG - chr6_2:79810396-79810415 None:intergenic 20.0%
!! ACAAACATTTGATTCAAAAT+TGG + chr6_2:79811198-79811217 Msa0930730:intron 20.0%
!! CAAACATTTGATTCAAAATT+GGG + chr6_2:79811199-79811218 Msa0930730:intron 20.0%
!! TAACCATAAACATTATGAAT+AGG - chr6_2:79811373-79811392 None:intergenic 20.0%
!!! TAGTTAGTAGTATTATTTTC+TGG + chr6_2:79811818-79811837 Msa0930730:intron 20.0%
!! GCTAAATGTATTATAACAAT+TGG + chr6_2:79811858-79811877 Msa0930730:intron 20.0%
!!! CTTTTGTTGTTAAATCAAAT+TGG + chr6_2:79812289-79812308 Msa0930730:CDS 20.0%
!!! AAAGTACTGTTGATTTTTTT+TGG - chr6_2:79812395-79812414 None:intergenic 20.0%
!!! AAAAAAATCAACAGTACTTT+TGG + chr6_2:79812395-79812414 Msa0930730:CDS 20.0%
!! ACAAAAAATGTTGAAATTTG+TGG + chr6_2:79812461-79812480 Msa0930730:CDS 20.0%
!! AGTATTTAACAAAGAAAACT+TGG - chr6_2:79812586-79812605 None:intergenic 20.0%
!!! TATTTGGATTTTTTGTTCAT+AGG - chr6_2:79812611-79812630 None:intergenic 20.0%
!!! CTATATATATCCAATTTGTT+AGG - chr6_2:79812736-79812755 None:intergenic 20.0%
!! CTAACAAATTGGATATATAT+AGG + chr6_2:79812734-79812753 Msa0930730:three_prime_UTR 20.0%
! AAACCAAAAAATATGGATGA+AGG + chr6_2:79807273-79807292 Msa0930730:exon 25.0%
! GTTGACATTAAATGTGATAA+AGG + chr6_2:79807456-79807475 Msa0930730:CDS 25.0%
! TTTATTAGATTTGACTCAAG+TGG + chr6_2:79807580-79807599 Msa0930730:intron 25.0%
! GGTATTTCAATACAGTATTT+GGG + chr6_2:79807847-79807866 Msa0930730:CDS 25.0%
! AAAAAAGGAAGAAATCATGA+GGG - chr6_2:79808043-79808062 None:intergenic 25.0%
! AAAAAAAGGAAGAAATCATG+AGG - chr6_2:79808044-79808063 None:intergenic 25.0%
! ATTGATTGGTACATAGTATT+TGG - chr6_2:79808163-79808182 None:intergenic 25.0%
! ATATGATTTCCATGATTGAT+TGG - chr6_2:79808177-79808196 None:intergenic 25.0%
! CAAGAAAGACATTAATGTAA+TGG - chr6_2:79808208-79808227 None:intergenic 25.0%
! CATTACATTAATGTCTTTCT+TGG + chr6_2:79808206-79808225 Msa0930730:intron 25.0%
! TACCGTTAATTATACAATTC+GGG + chr6_2:79808295-79808314 Msa0930730:intron 25.0%
! TACCCGAATTGTATAATTAA+CGG - chr6_2:79808300-79808319 None:intergenic 25.0%
! TCTATACAATTCAAATGTAG+TGG - chr6_2:79808425-79808444 None:intergenic 25.0%
!!! ATTTTTTTCAAGTGGTATAG+TGG - chr6_2:79808993-79809012 None:intergenic 25.0%
! AGTCAACTTAATTACATCAA+TGG + chr6_2:79809134-79809153 Msa0930730:intron 25.0%
! TAATTACATCAATGGTTTCA+AGG + chr6_2:79809142-79809161 Msa0930730:intron 25.0%
! TTAGAAAAATAGACTACTAG+TGG - chr6_2:79809333-79809352 None:intergenic 25.0%
! TAATAAGTACAATTGCATCT+AGG + chr6_2:79809904-79809923 Msa0930730:intron 25.0%
!!! GTGTTTCTGATCTTTATTTT+TGG - chr6_2:79810397-79810416 None:intergenic 25.0%
! AAATAAAGATCAGAAACACA+AGG + chr6_2:79810398-79810417 Msa0930730:intron 25.0%
! ACCCATAAAAACAACTAATA+AGG + chr6_2:79810656-79810675 Msa0930730:intron 25.0%
!!! CCCTTATTAGTTGTTTTTAT+GGG - chr6_2:79810660-79810679 None:intergenic 25.0%
! CCCATAAAAACAACTAATAA+GGG + chr6_2:79810657-79810676 Msa0930730:intron 25.0%
! ATTGAGATCAAGTCAAATTA+TGG - chr6_2:79810695-79810714 None:intergenic 25.0%
! AATTCAATGTTTGAAGATGT+AGG - chr6_2:79810934-79810953 None:intergenic 25.0%
!! TCTTCAAACATTGAATTTTC+AGG + chr6_2:79810937-79810956 Msa0930730:intron 25.0%
!! CTTCAAACATTGAATTTTCA+GGG + chr6_2:79810938-79810957 Msa0930730:intron 25.0%
! TAACCATAATATGTGTAAAG+AGG + chr6_2:79810963-79810982 Msa0930730:CDS 25.0%
! AACCATAATATGTGTAAAGA+GGG + chr6_2:79810964-79810983 Msa0930730:CDS 25.0%
! TAAACTTACATCGAAGATAA+AGG - chr6_2:79811132-79811151 None:intergenic 25.0%
! ATAGTAGATATGTTTGTACT+TGG - chr6_2:79811553-79811572 None:intergenic 25.0%
! ATTAAATTGAGAGTGAGAAA+AGG - chr6_2:79811580-79811599 None:intergenic 25.0%
!! TTTTCTCACTCTCAATTTAA+TGG + chr6_2:79811579-79811598 Msa0930730:CDS 25.0%
! TTTCTCACTCTCAATTTAAT+GGG + chr6_2:79811580-79811599 Msa0930730:CDS 25.0%
! TCGGTATTTACATAAAGTTT+GGG - chr6_2:79811607-79811626 None:intergenic 25.0%
! ATCGGTATTTACATAAAGTT+TGG - chr6_2:79811608-79811627 None:intergenic 25.0%
! ACTTTATGTAAATACCGATA+AGG + chr6_2:79811609-79811628 Msa0930730:CDS 25.0%
! GAAAATCAAACATACCTTAT+CGG - chr6_2:79811626-79811645 None:intergenic 25.0%
! ATAATACTATATGAAGAGGA+AGG - chr6_2:79811653-79811672 None:intergenic 25.0%
! TATGAGTGAATAAGAAACTT+AGG - chr6_2:79811708-79811727 None:intergenic 25.0%
! GTTTCTTATTCACTCATAAT+AGG + chr6_2:79811710-79811729 Msa0930730:intron 25.0%
! ATGTATTATAACAATTGGGA+TGG + chr6_2:79811863-79811882 Msa0930730:intron 25.0%
! AATTGTGTAAATTTGTCTCT+AGG - chr6_2:79811892-79811911 None:intergenic 25.0%
!! CTACTACAATAGTACAATTT+TGG - chr6_2:79811925-79811944 None:intergenic 25.0%
! AAATTGAAGACACAACAATA+TGG + chr6_2:79812058-79812077 Msa0930730:CDS 25.0%
!!! GTTTCTTTGAAGCAATAAAT+GGG + chr6_2:79812103-79812122 Msa0930730:CDS 25.0%
! TGTTAAATCAAATTGGACAA+AGG + chr6_2:79812296-79812315 Msa0930730:CDS 25.0%
! GTTAAATCAAATTGGACAAA+GGG + chr6_2:79812297-79812316 Msa0930730:CDS 25.0%
!!! AACATTTTTTGTGTTTGTAC+TGG - chr6_2:79812453-79812472 None:intergenic 25.0%
! TACTGTATATCCTAACAAAT+TGG + chr6_2:79812723-79812742 Msa0930730:three_prime_UTR 25.0%
! TATCTCTAGTTGTATTATAG+AGG + chr6_2:79812770-79812789 Msa0930730:three_prime_UTR 25.0%
! GTTTTTCTTTTCAAATACGG+TGG - chr6_2:79807194-79807213 None:intergenic 30.0%
!!! ATGCCTTCATCCATATTTTT+TGG - chr6_2:79807279-79807298 None:intergenic 30.0%
ATTAGTGAATCAGCTTACTT+GGG - chr6_2:79807520-79807539 None:intergenic 30.0%
AATTAGTGAATCAGCTTACT+TGG - chr6_2:79807521-79807540 None:intergenic 30.0%
AGATGTCAGAGTTATTCAAT+AGG + chr6_2:79807793-79807812 Msa0930730:intron 30.0%
GGGTATTTCAATACAGTATT+TGG + chr6_2:79807846-79807865 Msa0930730:CDS 30.0%
!! ACAAAGTGTTTAGGTATTGA+TGG + chr6_2:79807906-79807925 Msa0930730:CDS 30.0%
TTAGAAAGAAGAAGTGGATA+TGG - chr6_2:79807966-79807985 None:intergenic 30.0%
ACTTGTTTAGAAAGAAGAAG+TGG - chr6_2:79807972-79807991 None:intergenic 30.0%
! TTTTCTATCCCAAAGTAAAC+TGG + chr6_2:79808125-79808144 Msa0930730:intron 30.0%
TGGAAAAACCAGTTTACTTT+GGG - chr6_2:79808136-79808155 None:intergenic 30.0%
TACTATGTACCAATCAATCA+TGG + chr6_2:79808165-79808184 Msa0930730:intron 30.0%
!! CTTTCTTGGTAATTTTCCTA+CGG + chr6_2:79808220-79808239 Msa0930730:intron 30.0%
ATTGGATCAAATCTACAACA+TGG + chr6_2:79808395-79808414 Msa0930730:intron 30.0%
TCATATGATCAAGAGAGATA+TGG - chr6_2:79808590-79808609 None:intergenic 30.0%
TTAGGTAACATGGAAATAAG+AGG + chr6_2:79808664-79808683 Msa0930730:intron 30.0%
GAAATAAGAGGTTATCTTGT+TGG + chr6_2:79808676-79808695 Msa0930730:intron 30.0%
ACAAAAATGTAGTCCAAGTA+TGG - chr6_2:79808772-79808791 None:intergenic 30.0%
GAGATTAATCACTAGGAATT+TGG - chr6_2:79808868-79808887 None:intergenic 30.0%
TACCAGCTAAGTTAAGTTAA+CGG - chr6_2:79808890-79808909 None:intergenic 30.0%
TATTACTAGTGGCTAACAAA+AGG - chr6_2:79809263-79809282 None:intergenic 30.0%
GGAGAAAGTTATGATTACAA+TGG + chr6_2:79809459-79809478 Msa0930730:intron 30.0%
! TTGAACTGTTCTAAGTGATA+AGG + chr6_2:79809647-79809666 Msa0930730:intron 30.0%
! TGAACTGTTCTAAGTGATAA+GGG + chr6_2:79809648-79809667 Msa0930730:intron 30.0%
AATTGATTGTTATAGGAAGG+AGG + chr6_2:79810116-79810135 Msa0930730:intron 30.0%
ATTGATTGTTATAGGAAGGA+GGG + chr6_2:79810117-79810136 Msa0930730:intron 30.0%
TTGGAGAACAGTTATTTAGT+GGG + chr6_2:79810355-79810374 Msa0930730:intron 30.0%
!!! TCTGATCTTTATTTTTGGGA+AGG - chr6_2:79810392-79810411 None:intergenic 30.0%
!!! GCCCTTATTAGTTGTTTTTA+TGG - chr6_2:79810661-79810680 None:intergenic 30.0%
!!! GTGTTTTTTTAGCATGTCAA+TGG - chr6_2:79810723-79810742 None:intergenic 30.0%
TTGACATGCTAAAAAAACAC+AGG + chr6_2:79810723-79810742 Msa0930730:intron 30.0%
! ACATACATCTTTTGCACAAA+CGG - chr6_2:79810806-79810825 None:intergenic 30.0%
!!! TCTGTCATTTTCTTTCGAAA+TGG + chr6_2:79810861-79810880 Msa0930730:intron 30.0%
ACCATAATATGTGTAAAGAG+GGG + chr6_2:79810965-79810984 Msa0930730:CDS 30.0%
AAGCTAAAATCAATAGCATC+TGG - chr6_2:79811046-79811065 None:intergenic 30.0%
!! AAGATAAAGGTTGATAGCAT+GGG - chr6_2:79811119-79811138 None:intergenic 30.0%
ACAAGGTTTAATAAAGCCTT+TGG + chr6_2:79811342-79811361 Msa0930730:intron 30.0%
CAAGGTTTAATAAAGCCTTT+GGG + chr6_2:79811343-79811362 Msa0930730:intron 30.0%
CCATAAACATTATGAATAGG+AGG - chr6_2:79811370-79811389 None:intergenic 30.0%
CCTCCTATTCATAATGTTTA+TGG + chr6_2:79811367-79811386 Msa0930730:intron 30.0%
AAGTATGACAAATCTGACAT+TGG - chr6_2:79811472-79811491 None:intergenic 30.0%
TGTACTATTGTAGTAGCATA+TGG + chr6_2:79811929-79811948 Msa0930730:intron 30.0%
!! CTTAACCAACAAGTCATTTT+TGG - chr6_2:79811957-79811976 None:intergenic 30.0%
!! CAAAAATGACTTGTTGGTTA+AGG + chr6_2:79811955-79811974 Msa0930730:intron 30.0%
GTTGGTTAAGGTAATTTACA+AGG + chr6_2:79811967-79811986 Msa0930730:intron 30.0%
AAGGTAATTTACAAGGATGT+TGG + chr6_2:79811974-79811993 Msa0930730:intron 30.0%
!! ATTTTGTTGCTAAGCATTGT+TGG - chr6_2:79812042-79812061 None:intergenic 30.0%
!! CGTTTCTTTGAAGCAATAAA+TGG + chr6_2:79812102-79812121 Msa0930730:CDS 30.0%
! CATTTAGGATTGTATTTCAC+TGG - chr6_2:79812156-79812175 None:intergenic 30.0%
CAGTGAAATACAATCCTAAA+TGG + chr6_2:79812154-79812173 Msa0930730:CDS 30.0%
!!! TTTTTTTCAGTGCTCCATTT+AGG - chr6_2:79812171-79812190 None:intergenic 30.0%
TGAGAAAATTCCAGATTTCT+GGG - chr6_2:79812337-79812356 None:intergenic 30.0%
ATAAGGGTAAGATATGTTTG+TGG + chr6_2:79812559-79812578 Msa0930730:CDS 30.0%
TAAGGGTAAGATATGTTTGT+GGG + chr6_2:79812560-79812579 Msa0930730:CDS 30.0%
TGTATTATAGAGGTAGTCAT+AGG + chr6_2:79812780-79812799 Msa0930730:three_prime_UTR 30.0%
! TCTTTTATGGATCCAAAACC+TGG - chr6_2:79807429-79807448 None:intergenic 35.0%
AATACGAAATTCGGTTGAGA+GGG - chr6_2:79807705-79807724 None:intergenic 35.0%
TAATACGAAATTCGGTTGAG+AGG - chr6_2:79807706-79807725 None:intergenic 35.0%
!! TGATTGAAATTTGGGTTGTG+TGG + chr6_2:79807760-79807779 Msa0930730:intron 35.0%
AATAGGAAGAGTTCAATACC+TGG + chr6_2:79807810-79807829 Msa0930730:CDS 35.0%
ATAGGAAGAGTTCAATACCT+GGG + chr6_2:79807811-79807830 Msa0930730:CDS 35.0%
ACTGTATTGAAATACCCACT+TGG - chr6_2:79807843-79807862 None:intergenic 35.0%
! TACAGTATTTGGGTTTGATG+AGG + chr6_2:79807857-79807876 Msa0930730:CDS 35.0%
! ACAGTATTTGGGTTTGATGA+GGG + chr6_2:79807858-79807877 Msa0930730:CDS 35.0%
GTGGAAAAACCAGTTTACTT+TGG - chr6_2:79808137-79808156 None:intergenic 35.0%
ATGATCAAGAGAGATATGGT+TGG - chr6_2:79808586-79808605 None:intergenic 35.0%
TATGTTAGCATCACCATACT+TGG + chr6_2:79808756-79808775 Msa0930730:intron 35.0%
GTTAACGGAGATTAATCACT+AGG - chr6_2:79808875-79808894 None:intergenic 35.0%
AGCCAGAGAATTTGATTGAA+CGG + chr6_2:79809201-79809220 Msa0930730:intron 35.0%
TTCAAATATACCCACTTGCA+AGG + chr6_2:79809867-79809886 Msa0930730:intron 35.0%
! AGTTTGAGTTTGTAGTCTAG+AGG + chr6_2:79810030-79810049 Msa0930730:intron 35.0%
TATAGGAAGGAGGGATTATT+TGG + chr6_2:79810126-79810145 Msa0930730:intron 35.0%
TTAAGGAACTTCGTCTGTAT+AGG - chr6_2:79810167-79810186 None:intergenic 35.0%
ATCAGATTCATCGAGAACTT+TGG + chr6_2:79810222-79810241 Msa0930730:intron 35.0%
TCAGATTCATCGAGAACTTT+GGG + chr6_2:79810223-79810242 Msa0930730:intron 35.0%
TGGAGGGAAAGATTTATTGT+TGG + chr6_2:79810272-79810291 Msa0930730:CDS 35.0%
AAGAATCACTTGGATGATCT+TGG + chr6_2:79810336-79810355 Msa0930730:intron 35.0%
CTTGGAGAACAGTTATTTAG+TGG + chr6_2:79810354-79810373 Msa0930730:intron 35.0%
TCCCCTCTTTACACATATTA+TGG - chr6_2:79810969-79810988 None:intergenic 35.0%
ATAATATGTGTAAAGAGGGG+AGG + chr6_2:79810968-79810987 Msa0930730:CDS 35.0%
TAATATGTGTAAAGAGGGGA+GGG + chr6_2:79810969-79810988 Msa0930730:CDS 35.0%
!! TCAATAGCATCTGGTTTGTT+AGG - chr6_2:79811037-79811056 None:intergenic 35.0%
!! GAAGATAAAGGTTGATAGCA+TGG - chr6_2:79811120-79811139 None:intergenic 35.0%
TTGGTTGTTGAACTAATGAG+AGG + chr6_2:79811415-79811434 Msa0930730:intron 35.0%
TATGACAAATCTGACATTGG+TGG - chr6_2:79811469-79811488 None:intergenic 35.0%
TCATACTTTCTTGACTACCA+AGG + chr6_2:79811484-79811503 Msa0930730:CDS 35.0%
CACTCATAATAGGTAACAGT+TGG + chr6_2:79811720-79811739 Msa0930730:intron 35.0%
AATAGGTAACAGTTGGCAAA+AGG + chr6_2:79811727-79811746 Msa0930730:intron 35.0%
TTGAAGGAATGAAATGCAAC+AGG + chr6_2:79811775-79811794 Msa0930730:CDS 35.0%
! TGGAACCAAAAATGACTTGT+TGG + chr6_2:79811949-79811968 Msa0930730:intron 35.0%
TAATAGATGTTCCACGTGTA+TGG - chr6_2:79812013-79812032 None:intergenic 35.0%
!! ATGGAGCACTGAAAAAAATG+TGG + chr6_2:79812173-79812192 Msa0930730:CDS 35.0%
AATGTGGCATTTATTGTCAC+AGG + chr6_2:79812189-79812208 Msa0930730:CDS 35.0%
AGAACAATAACCTCAGATGT+AGG - chr6_2:79812254-79812273 None:intergenic 35.0%
! TCTGAGGTTATTGTTCTCTA+AGG + chr6_2:79812257-79812276 Msa0930730:CDS 35.0%
CTGAGAAAATTCCAGATTTC+TGG - chr6_2:79812338-79812357 None:intergenic 35.0%
GCAATAAGCACATCAATATC+TGG + chr6_2:79812357-79812376 Msa0930730:CDS 35.0%
! GATTCTAGTGTTTTTCCAAC+AGG + chr6_2:79812417-79812436 Msa0930730:CDS 35.0%
!! TTTTGTGTTTGTACTGGTAC+TGG - chr6_2:79812447-79812466 None:intergenic 35.0%
!! GCAAAATTGGTGATGGATAA+GGG + chr6_2:79812543-79812562 Msa0930730:CDS 35.0%
AACCCAAGACTTGCAAATGA+TGG + chr6_2:79807121-79807140 Msa0930730:five_prime_UTR 40.0%
TGCCATCATTTGCAAGTCTT+GGG - chr6_2:79807126-79807145 None:intergenic 40.0%
ATGCCATCATTTGCAAGTCT+TGG - chr6_2:79807127-79807146 None:intergenic 40.0%
TTTCAAATACGGTGGAAGAG+AGG - chr6_2:79807186-79807205 None:intergenic 40.0%
GAGAAAGCTCTTAACAGCTT+AGG + chr6_2:79807303-79807322 Msa0930730:CDS 40.0%
GCTCTTAACAGCTTAGGAAA+AGG + chr6_2:79807309-79807328 Msa0930730:CDS 40.0%
! TCGACTTGACATCAGATTTC+AGG + chr6_2:79807334-79807353 Msa0930730:CDS 40.0%
TTCAGGCTCAAATTCTGCAA+AGG + chr6_2:79807351-79807370 Msa0930730:CDS 40.0%
! GTCAACGGAGACATCTTTTA+TGG - chr6_2:79807442-79807461 None:intergenic 40.0%
!! TGTCGGATTGATAACGTGTA+CGG - chr6_2:79807485-79807504 None:intergenic 40.0%
GAGGGTAGTAAAGTCTATCA+TGG - chr6_2:79807687-79807706 None:intergenic 40.0%
ATACCTGGGAAAATACCAAG+TGG + chr6_2:79807825-79807844 Msa0930730:CDS 40.0%
TACCTGGGAAAATACCAAGT+GGG + chr6_2:79807826-79807845 Msa0930730:CDS 40.0%
! GCAGCTAACACAAAGTGTTT+AGG + chr6_2:79807897-79807916 Msa0930730:CDS 40.0%
TTCAAGCTGTTCCTTCTTCA+TGG + chr6_2:79807994-79808013 Msa0930730:CDS 40.0%
TCAAGCTGTTCCTTCTTCAT+GGG + chr6_2:79807995-79808014 Msa0930730:CDS 40.0%
GGTACATAGTATTTGGTACG+TGG - chr6_2:79808156-79808175 None:intergenic 40.0%
AACCACAACCAGTAAAAGTG+GGG - chr6_2:79808254-79808273 None:intergenic 40.0%
CAACCACAACCAGTAAAAGT+GGG - chr6_2:79808255-79808274 None:intergenic 40.0%
TCAACCACAACCAGTAAAAG+TGG - chr6_2:79808256-79808275 None:intergenic 40.0%
ACATACAATCCAAATTCCCG+CGG + chr6_2:79808612-79808631 Msa0930730:intron 40.0%
TGTAGGTGAAACCATGTTGA+TGG + chr6_2:79808640-79808659 Msa0930730:intron 40.0%
GTAGGTGAAACCATGTTGAT+GGG + chr6_2:79808641-79808660 Msa0930730:intron 40.0%
!! TGAAACCATGTTGATGGGTT+AGG + chr6_2:79808646-79808665 Msa0930730:intron 40.0%
TGTTACCTAACCCATCAACA+TGG - chr6_2:79808654-79808673 None:intergenic 40.0%
!! TGTTGATGGGTTAGGTAACA+TGG + chr6_2:79808654-79808673 Msa0930730:intron 40.0%
CTCCGTTAACTTAACTTAGC+TGG + chr6_2:79808885-79808904 Msa0930730:intron 40.0%
CTCCGTTCAATCAAATTCTC+TGG - chr6_2:79809206-79809225 None:intergenic 40.0%
AAATATACCCACTTGCAAGG+AGG + chr6_2:79809870-79809889 Msa0930730:intron 40.0%
! AAGTGATTCTTGAGCTCTGA+TGG - chr6_2:79810327-79810346 None:intergenic 40.0%
ATCAGAGCTCAAGAATCACT+TGG + chr6_2:79810326-79810345 Msa0930730:intron 40.0%
!! GGTGTTGCTTGCATAACTTT+AGG - chr6_2:79810451-79810470 None:intergenic 40.0%
CCATTGAACGCAACAATTTG+CGG - chr6_2:79810775-79810794 None:intergenic 40.0%
AATATGTGTAAAGAGGGGAG+GGG + chr6_2:79810970-79810989 Msa0930730:CDS 40.0%
! CCTTTAAGAAGAGAGGTGAT+GGG - chr6_2:79811073-79811092 None:intergenic 40.0%
! ACCTTTAAGAAGAGAGGTGA+TGG - chr6_2:79811074-79811093 None:intergenic 40.0%
GCTTGGAAGTCAATGAAGTA+TGG - chr6_2:79811315-79811334 None:intergenic 40.0%
TAAACCTTGTGTTGTGTGCT+TGG - chr6_2:79811332-79811351 None:intergenic 40.0%
TTATGAATAGGAGGACCCAA+AGG - chr6_2:79811361-79811380 None:intergenic 40.0%
TTGAGCACGTTCTCAATTCT+TGG + chr6_2:79811396-79811415 Msa0930730:intron 40.0%
ACTACCAAGGATACAAGCTT+TGG + chr6_2:79811497-79811516 Msa0930730:CDS 40.0%
CTACCAAGGATACAAGCTTT+GGG + chr6_2:79811498-79811517 Msa0930730:CDS 40.0%
AGAGGTAGATCATTGTGAAC+AGG - chr6_2:79811526-79811545 None:intergenic 40.0%
GTTCACAATGATCTACCTCT+TGG + chr6_2:79811526-79811545 Msa0930730:CDS 40.0%
ATGTTTGTACTTGGACCAAG+AGG - chr6_2:79811544-79811563 None:intergenic 40.0%
AACAAACGCATACCTGTGAT+TGG - chr6_2:79811753-79811772 None:intergenic 40.0%
! GGTATGCGTTTGTTTCTTGA+AGG + chr6_2:79811759-79811778 Msa0930730:CDS 40.0%
AATTGGACAAAGGGTTCTTC+TGG + chr6_2:79812306-79812325 Msa0930730:CDS 40.0%
GACACGTCAGAGTTATGTAA+AGG + chr6_2:79812483-79812502 Msa0930730:CDS 40.0%
!! GGCAAAATTGGTGATGGATA+AGG + chr6_2:79812542-79812561 Msa0930730:CDS 40.0%
AAAAGAGAGCTTTCTGTGCC+AGG + chr6_2:79807408-79807427 Msa0930730:CDS 45.0%
GAATCAGCTTACTTGGGTGA+AGG - chr6_2:79807514-79807533 None:intergenic 45.0%
CTCAAGTGGTCAATGAAAGC+AGG + chr6_2:79807594-79807613 Msa0930730:intron 45.0%
! TACCCACTTGGTATTTTCCC+AGG - chr6_2:79807831-79807850 None:intergenic 45.0%
TTGGGTTTGATGAGGGTTCA+TGG + chr6_2:79807865-79807884 Msa0930730:CDS 45.0%
TGGGTTTGATGAGGGTTCAT+GGG + chr6_2:79807866-79807885 Msa0930730:CDS 45.0%
TACATGTTACCGCGGGAATT+TGG - chr6_2:79808624-79808643 None:intergenic 45.0%
AAATTCCCGCGGTAACATGT+AGG + chr6_2:79808623-79808642 Msa0930730:intron 45.0%
TTTCACCTACATGTTACCGC+GGG - chr6_2:79808631-79808650 None:intergenic 45.0%
GTTTCACCTACATGTTACCG+CGG - chr6_2:79808632-79808651 None:intergenic 45.0%
! TTTGGGACTCACATCCTTGT+GGG + chr6_2:79810240-79810259 Msa0930730:CDS 45.0%
TTGCGGACCAAAGACATCAA+AGG - chr6_2:79810758-79810777 None:intergenic 45.0%
CCGCAAATTGTTGCGTTCAA+TGG + chr6_2:79810772-79810791 Msa0930730:CDS 45.0%
TTCTTTCGAAATGGTGCTCG+TGG + chr6_2:79810870-79810889 Msa0930730:intron 45.0%
CCCATCACCTCTCTTCTTAA+AGG + chr6_2:79811070-79811089 Msa0930730:CDS 45.0%
!! AGGAGCACCTTTAAGAAGAG+AGG - chr6_2:79811080-79811099 None:intergenic 45.0%
!! TCTCTTCTTAAAGGTGCTCC+TGG + chr6_2:79811079-79811098 Msa0930730:CDS 45.0%
!! AAAGGTTGATAGCATGGGAG+AGG - chr6_2:79811114-79811133 None:intergenic 45.0%
ACTTCCAAGCACACAACACA+AGG + chr6_2:79811325-79811344 Msa0930730:intron 45.0%
!! TACAAGGATGTTGGTGACAC+AGG + chr6_2:79811983-79812002 Msa0930730:intron 45.0%
!! CACTGGTGCTGTACATACAT+GGG - chr6_2:79812139-79812158 None:intergenic 45.0%
!! TCACTGGTGCTGTACATACA+TGG - chr6_2:79812140-79812159 None:intergenic 45.0%
CAAAGAGAGTCCTACATCTG+AGG + chr6_2:79812241-79812260 Msa0930730:CDS 45.0%
TCTGGATTGTCCCAGAAATC+TGG + chr6_2:79812324-79812343 Msa0930730:CDS 45.0%
! TGTGTTTGTACTGGTACTGG+AGG - chr6_2:79812444-79812463 None:intergenic 45.0%
AATGACCTGGAGTGTGTTGT+GGG - chr6_2:79812509-79812528 None:intergenic 45.0%
! CAGGTCATTGGTTGGTTACT+GGG + chr6_2:79812520-79812539 Msa0930730:CDS 45.0%
! AGGTCATTGGTTGGTTACTG+GGG + chr6_2:79812521-79812540 Msa0930730:CDS 45.0%
GTTGGTTACTGGGGCAAAAT+TGG + chr6_2:79812530-79812549 Msa0930730:CDS 45.0%
TACTGGGGCAAAATTGGTGA+TGG + chr6_2:79812536-79812555 Msa0930730:CDS 45.0%
!! ATATTATTAAATTACATATT+TGG - chr6_2:79808092-79808111 None:intergenic 5.0%
!!! TATTTTTTACTATTTTAAAT+AGG + chr6_2:79808540-79808559 Msa0930730:intron 5.0%
!!! ATTTTTTACTATTTTAAATA+GGG + chr6_2:79808541-79808560 Msa0930730:intron 5.0%
!!! CTTTTTATATATTTTTTATT+TGG - chr6_2:79812627-79812646 None:intergenic 5.0%
!! ATAAAAAATATATAAAAAGA+AGG + chr6_2:79812628-79812647 Msa0930730:three_prime_UTR 5.0%
! GAGCTTTCTGTGCCAGGTTT+TGG + chr6_2:79807414-79807433 Msa0930730:CDS 50.0%
TTGGGTGAAGGTGAGGATGT+CGG - chr6_2:79807502-79807521 None:intergenic 50.0%
AGCTTACTTGGGTGAAGGTG+AGG - chr6_2:79807509-79807528 None:intergenic 50.0%
!! GTCCCCACTTTTACTGGTTG+TGG + chr6_2:79808249-79808268 Msa0930730:intron 50.0%
ACCCACTTGCAAGGAGGATA+TGG + chr6_2:79809876-79809895 Msa0930730:intron 50.0%
CCCATATCCTCCTTGCAAGT+GGG - chr6_2:79809880-79809899 None:intergenic 50.0%
CCCACTTGCAAGGAGGATAT+GGG + chr6_2:79809877-79809896 Msa0930730:intron 50.0%
CCACTTGCAAGGAGGATATG+GGG + chr6_2:79809878-79809897 Msa0930730:intron 50.0%
!! CTTTGGGACTCACATCCTTG+TGG + chr6_2:79810239-79810258 Msa0930730:CDS 50.0%
ATCCTTGTGGGTCTTAGCGT+TGG + chr6_2:79810252-79810271 Msa0930730:CDS 50.0%
! TTGTGGGTCTTAGCGTTGGA+GGG + chr6_2:79810256-79810275 Msa0930730:CDS 50.0%
CAAGACGTGTCTTCCACCTT+GGG + chr6_2:79810300-79810319 Msa0930730:intron 50.0%
CGGACCAAAGACATCAAAGG+CGG - chr6_2:79810755-79810774 None:intergenic 50.0%
TTCACTGTGGCTGCTCACTT+GGG - chr6_2:79810999-79811018 None:intergenic 50.0%
ATTCACTGTGGCTGCTCACT+TGG - chr6_2:79811000-79811019 None:intergenic 50.0%
AAGTGAGCAGCCACAGTGAA+TGG + chr6_2:79810999-79811018 Msa0930730:CDS 50.0%
!! TTCTTAAAGGTGCTCCTGGC+AGG + chr6_2:79811083-79811102 Msa0930730:CDS 50.0%
!! TCTTAAAGGTGCTCCTGGCA+GGG + chr6_2:79811084-79811103 Msa0930730:CDS 50.0%
GAGCCCAAAGCTTGTATCCT+TGG - chr6_2:79811504-79811523 None:intergenic 50.0%
GTTGGCAAAAGGCCAATCAC+AGG + chr6_2:79811738-79811757 Msa0930730:CDS 50.0%
! ACACAGGTTAGCCATACACG+TGG + chr6_2:79811999-79812018 Msa0930730:intron 50.0%
CAATGACCTGGAGTGTGTTG+TGG - chr6_2:79812510-79812529 None:intergenic 50.0%
CACAACACACTCCAGGTCAT+TGG + chr6_2:79812508-79812527 Msa0930730:CDS 50.0%
ACACACTCCAGGTCATTGGT+TGG + chr6_2:79812512-79812531 Msa0930730:CDS 50.0%
CCAGTAACCAACCAATGACC+TGG - chr6_2:79812522-79812541 None:intergenic 50.0%
! CCAGGTCATTGGTTGGTTAC+TGG + chr6_2:79812519-79812538 Msa0930730:CDS 50.0%
GCAGGAGGATCCCATGAAGA+AGG - chr6_2:79808008-79808027 None:intergenic 55.0%
!! TGAGGGTACCTTGCAAGTGC+AGG - chr6_2:79808026-79808045 None:intergenic 55.0%
!! CTGCGTGTCCCCACTTTTAC+TGG + chr6_2:79808243-79808262 Msa0930730:intron 55.0%
CCCCATATCCTCCTTGCAAG+TGG - chr6_2:79809881-79809900 None:intergenic 55.0%
CTCCAACGCTAAGACCCACA+AGG - chr6_2:79810257-79810276 None:intergenic 55.0%
! CTTGTGGGTCTTAGCGTTGG+AGG + chr6_2:79810255-79810274 Msa0930730:CDS 55.0%
GCAAGACGTGTCTTCCACCT+TGG + chr6_2:79810299-79810318 Msa0930730:intron 55.0%
! CTTGAGCTCTGATGGTCCCA+AGG - chr6_2:79810319-79810338 None:intergenic 55.0%
CCAAAGACATCAAAGGCGGC+TGG - chr6_2:79810751-79810770 None:intergenic 55.0%
CCAGCCGCCTTTGATGTCTT+TGG + chr6_2:79810748-79810767 Msa0930730:CDS 55.0%
CTGTGAGCAGCCATTCACTG+TGG - chr6_2:79811012-79811031 None:intergenic 55.0%
!! CTTAAAGGTGCTCCTGGCAG+GGG + chr6_2:79811085-79811104 Msa0930730:CDS 55.0%
! ACTGGTACTGGAGGTCCTGT+TGG - chr6_2:79812435-79812454 None:intergenic 55.0%
AAAGGCCCACAACACACTCC+AGG + chr6_2:79812501-79812520 Msa0930730:CDS 55.0%
GGGATCCTCCTGCACTTGCA+AGG + chr6_2:79808015-79808034 Msa0930730:CDS 60.0%
GGGTACCTTGCAAGTGCAGG+AGG - chr6_2:79808023-79808042 None:intergenic 60.0%
! GAGCTCTGATGGTCCCAAGG+TGG - chr6_2:79810316-79810335 None:intergenic 60.0%
AAGTGGGGACACGCAGCCGT+AGG - chr6_2:79808239-79808258 None:intergenic 65.0%
TGGGAGAGGAATCCCCTGCC+AGG - chr6_2:79811100-79811119 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 79807102 79812805 79807102 ID=Msa0930730;Name=Msa0930730
chr6_2 mRNA 79807102 79812805 79807102 ID=Msa0930730-mRNA-1;Parent=Msa0930730;Name=Msa0930730-mRNA-1;_AED=0.11;_eAED=0.11;_QI=183|0.85|0.87|1|1|1|8|191|549
chr6_2 exon 79807102 79807521 79807102 ID=Msa0930730-mRNA-1:exon:13853;Parent=Msa0930730-mRNA-1
chr6_2 exon 79807795 79808036 79807795 ID=Msa0930730-mRNA-1:exon:13854;Parent=Msa0930730-mRNA-1
chr6_2 exon 79810227 79810293 79810227 ID=Msa0930730-mRNA-1:exon:13855;Parent=Msa0930730-mRNA-1
chr6_2 exon 79810745 79810819 79810745 ID=Msa0930730-mRNA-1:exon:13856;Parent=Msa0930730-mRNA-1
chr6_2 exon 79810959 79811142 79810959 ID=Msa0930730-mRNA-1:exon:13857;Parent=Msa0930730-mRNA-1
chr6_2 exon 79811461 79811630 79811461 ID=Msa0930730-mRNA-1:exon:13858;Parent=Msa0930730-mRNA-1
chr6_2 exon 79811732 79811796 79811732 ID=Msa0930730-mRNA-1:exon:13859;Parent=Msa0930730-mRNA-1
chr6_2 exon 79812005 79812805 79812005 ID=Msa0930730-mRNA-1:exon:13860;Parent=Msa0930730-mRNA-1
chr6_2 five_prime_UTR 79807102 79807284 79807102 ID=Msa0930730-mRNA-1:five_prime_utr;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79807285 79807521 79807285 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79807795 79808036 79807795 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79810227 79810293 79810227 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79810745 79810819 79810745 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79810959 79811142 79810959 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79811461 79811630 79811461 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79811732 79811796 79811732 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 CDS 79812005 79812614 79812005 ID=Msa0930730-mRNA-1:cds;Parent=Msa0930730-mRNA-1
chr6_2 three_prime_UTR 79812615 79812805 79812615 ID=Msa0930730-mRNA-1:three_prime_utr;Parent=Msa0930730-mRNA-1
Gene Sequence

>Msa0930730

ATGGATGAAGGCATAGTTGAGAAAGCTCTTAACAGCTTAGGAAAAGGCTTCGACTTGACATCAGATTTCAGGCTCAAATTCTGCAAAGGTGAAGAACGTTTGATTCTTCTCAATGAAATAGAGAAAAGAGAGCTTTCTGTGCCAGGTTTTGGATCCATAAAAGATGTCTCCGTTGACATTAAATGTGATAAAGGCGACCGTACACGTTATCAATCCGACATCCTCACCTTCACCCAAATGTCAGAGTTATTCAATAGGAAGAGTTCAATACCTGGGAAAATACCAAGTGGGTATTTCAATACAGTATTTGGGTTTGATGAGGGTTCATGGGCAGCTGAAGCAGCTAACACAAAGTGTTTAGGTATTGATGGATATTTGATAAAACTATTCAATCTTCATATTGATCCATATCCACTTCTTCTTTCTAAACAAGTCATTCAAGCTGTTCCTTCTTCATGGGATCCTCCTGCACTTGCAAGATTCATCGAGAACTTTGGGACTCACATCCTTGTGGGTCTTAGCGTTGGAGGGAAAGATTTATTGTTGGTACCAGCCGCCTTTGATGTCTTTGGTCCGCAAATTGTTGCGTTCAATGGCTCTACATCCGTTTGTGCAAAAGATGGAATAACCATAATATGTGTAAAGAGGGGAGGGGATACCCAAGTGAGCAGCCACAGTGAATGGCTGCTCACAGTTCCTAACAAACCAGATGCTATTGATTTTAGCTTCATTCCCATCACCTCTCTTCTTAAAGGTGCTCCTGGCAGGGGATTCCTCTCCCATGCTATCAACCTTTATCTTCGATATAAGCCACCAATGTCAGATTTGTCATACTTTCTTGACTACCAAGGATACAAGCTTTGGGCTCCTGTTCACAATGATCTACCTCTTGGTCCAAGTACAAACATATCTACTATTTCACCTTTTCTCACTCTCAATTTAATGGGTCCCAAACTTTATGTAAATACCGATAAGGTAACAGTTGGCAAAAGGCCAATCACAGGTATGCGTTTGTTTCTTGAAGGAATGAAATGCAACAGGTTAGCCATACACGTGGAACATCTATTAAACACTCCAACAATGCTTAGCAACAAAATTGAAGACACAACAATATGGTCAGAAGAAATCAACGATGAACGTTTCTTTGAAGCAATAAATGGGAAGAAATTTTCCCATGTATGTACAGCACCAGTGAAATACAATCCTAAATGGAGCACTGAAAAAAATGTGGCATTTATTGTCACAGGAGCACAACTTCATGTGCAGAAACATGACACAAAGAGAGTCCTACATCTGAGGTTATTGTTCTCTAAGGTGTCAAATTCTTTTGTTGTTAAATCAAATTGGACAAAGGGTTCTTCTGGATTGTCCCAGAAATCTGGAATTTTCTCAGCAATAAGCACATCAATATCTGGTTCTAGTAAAGACCAAAAAAAATCAACAGTACTTTTGGATTCTAGTGTTTTTCCAACAGGACCTCCAGTACCAGTACAAACACAAAAAATGTTGAAATTTGTGGACACGTCAGAGTTATGTAAAGGCCCACAACACACTCCAGGTCATTGGTTGGTTACTGGGGCAAAATTGGTGATGGATAAGGGTAAGATATGTTTGTGGGCCAAGTTTTCTTTGTTAAATACTGACCTATGA

Protein sequence

>Msa0930730

MDEGIVEKALNSLGKGFDLTSDFRLKFCKGEERLILLNEIEKRELSVPGFGSIKDVSVDIKCDKGDRTRYQSDILTFTQMSELFNRKSSIPGKIPSGYFNTVFGFDEGSWAAEAANTKCLGIDGYLIKLFNLHIDPYPLLLSKQVIQAVPSSWDPPALARFIENFGTHILVGLSVGGKDLLLVPAAFDVFGPQIVAFNGSTSVCAKDGITIICVKRGGDTQVSSHSEWLLTVPNKPDAIDFSFIPITSLLKGAPGRGFLSHAINLYLRYKPPMSDLSYFLDYQGYKLWAPVHNDLPLGPSTNISTISPFLTLNLMGPKLYVNTDKVTVGKRPITGMRLFLEGMKCNRLAIHVEHLLNTPTMLSNKIEDTTIWSEEINDERFFEAINGKKFSHVCTAPVKYNPKWSTEKNVAFIVTGAQLHVQKHDTKRVLHLRLLFSKVSNSFVVKSNWTKGSSGLSQKSGIFSAISTSISGSSKDQKKSTVLLDSSVFPTGPPVPVQTQKMLKFVDTSELCKGPQHTPGHWLVTGAKLVMDKGKICLWAKFSLLNTDL*