AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0002210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002210 MtrunA17_Chr8g0348131 96.154 130 5 0 2 131 138 267 6.85e-86 251
Msa0002210 MtrunA17_Chr8g0387631 70.312 128 34 1 2 129 134 257 4.44e-59 183
Msa0002210 MtrunA17_Chr1g0202401 62.931 116 43 0 2 117 127 242 3.09e-45 147
Msa0002210 MtrunA17_Chr5g0442361 40.650 123 69 1 2 124 120 238 1.48e-28 104
Msa0002210 MtrunA17_Chr3g0095441 40.741 108 64 0 3 110 120 227 1.72e-25 96.7
Msa0002210 MtrunA17_Chr4g0005701 35.345 116 75 0 2 117 83 198 2.42e-21 85.1
Msa0002210 MtrunA17_Chr6g0453331 35.246 122 79 0 2 123 73 194 1.37e-20 82.8
Msa0002210 MtrunA17_Chr8g0376101 34.746 118 73 1 12 129 107 220 1.48e-18 78.2
Msa0002210 MtrunA17_Chr1g0209261 38.710 93 53 1 37 129 115 203 4.20e-18 76.6
Msa0002210 MtrunA17_Chr3g0108661 36.697 109 65 1 12 120 133 237 4.44e-17 74.3
Msa0002210 MtrunA17_Chr5g0402811 32.500 120 81 0 2 121 93 212 2.20e-12 61.6
Msa0002210 MtrunA17_Chr1g0208091 32.500 120 77 1 12 131 88 203 6.03e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0002210 AT4G23630.1 70.312 128 34 1 2 129 149 272 4.84e-58 181
Msa0002210 AT4G23630.2 70.312 128 34 1 2 129 149 272 4.84e-58 181
Msa0002210 AT5G41600.1 65.625 128 44 0 2 129 128 255 4.32e-57 178
Msa0002210 AT1G64090.1 66.935 124 41 0 2 125 124 247 9.94e-55 172
Msa0002210 AT1G64090.2 66.935 124 41 0 2 125 140 263 1.17e-54 172
Msa0002210 AT4G11220.1 64.062 128 42 1 2 129 145 268 3.69e-53 168
Msa0002210 AT2G46170.1 60.938 128 46 1 2 129 128 251 2.31e-50 160
Msa0002210 AT3G61560.1 60.000 130 48 1 2 131 128 253 3.93e-50 160
Msa0002210 AT3G61560.2 60.000 130 48 1 2 131 128 253 3.93e-50 160
Msa0002210 AT4G01230.1 50.862 116 57 0 2 117 125 240 2.97e-40 134
Msa0002210 AT4G01230.2 50.862 116 57 0 2 117 127 242 3.68e-40 134
Msa0002210 AT3G61560.3 61.111 72 28 0 2 73 128 199 1.72e-26 98.6
Msa0002210 AT3G10260.1 35.345 116 75 0 2 117 121 236 6.03e-24 92.8
Msa0002210 AT3G10260.2 35.345 116 75 0 2 117 121 236 6.03e-24 92.8
Msa0002210 AT3G10260.3 35.345 116 75 0 2 117 141 256 6.45e-24 93.2
Msa0002210 AT3G18260.1 37.600 125 74 1 5 129 102 222 8.85e-23 89.4
Msa0002210 AT2G15280.1 36.134 119 76 0 2 120 74 192 2.12e-21 85.5
Msa0002210 AT3G10915.6 31.148 122 84 0 2 123 69 190 4.98e-18 76.3
Msa0002210 AT3G10915.3 31.148 122 84 0 2 123 68 189 5.73e-18 76.3
Msa0002210 AT3G10915.2 31.148 122 84 0 2 123 101 222 7.70e-18 76.6
Msa0002210 AT3G10915.7 31.148 122 84 0 2 123 126 247 1.01e-17 76.6
Msa0002210 AT3G10915.4 30.894 123 84 1 2 123 101 223 4.15e-16 72.0
Msa0002210 AT1G68230.2 35.714 126 73 2 4 129 95 212 5.89e-16 71.2
Msa0002210 AT3G10915.5 30.894 123 84 1 2 123 123 245 1.03e-15 71.2
Msa0002210 AT3G19460.1 37.755 98 61 0 2 99 82 179 1.15e-12 62.4
Msa0002210 AT3G19460.5 37.755 98 61 0 2 99 82 179 1.15e-12 62.4
Msa0002210 AT3G19460.4 37.755 98 61 0 2 99 82 179 1.15e-12 62.4
Msa0002210 AT2G46170.2 55.102 49 22 0 2 50 128 176 2.09e-12 61.6

Find 33 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCTTTCAACACACCTTT+TGG 0.257041 1_1:-4062419 None:intergenic
TTTGATTGATTAAAATATTT+GGG 0.294747 1_1:+4062677 Msa0002210:three_prime_UTR
TAGTCCTTGATTAACTTTGC+TGG 0.325176 1_1:+4062617 Msa0002210:three_prime_UTR
GATTTATTGGCTACTCTGTT+TGG 0.331987 1_1:+4062586 Msa0002210:three_prime_UTR
TTAAAATAACACGAATCATC+AGG 0.341305 1_1:-4062741 None:intergenic
TTCTAGGCAGTATTGATACT+TGG 0.392877 1_1:+4062535 Msa0002210:three_prime_UTR
TATTCTTACATATGTAGAAC+AGG 0.397072 1_1:-4062172 None:intergenic
GCAGAAGCAATCTGCAGAAA+TGG 0.411515 1_1:-4061621 None:intergenic
CTGTGGATTCTGTCGATTGT+TGG 0.422020 1_1:+4062128 Msa0002210:CDS
TCCTCAGGAAGATGAACAAT+TGG 0.425388 1_1:-4061597 None:intergenic
TTCTGTCGATTGTTGGGAGC+TGG 0.437564 1_1:+4062135 Msa0002210:CDS
TGTGGATTCTGTCGATTGTT+GGG 0.439036 1_1:+4062129 Msa0002210:CDS
ATCTGCAGAAATGGTTCCTC+AGG 0.452475 1_1:-4061612 None:intergenic
GCCTTGCGTGATATTGGTAC+TGG 0.456671 1_1:+4061675 Msa0002210:CDS
GATAGACCCTCTGGCAGAAA+AGG 0.457105 1_1:+4062325 Msa0002210:CDS
GTATGCTGTGTTTGACGAAA+AGG 0.466260 1_1:+4062370 Msa0002210:CDS
TCTAGGCAGTATTGATACTT+GGG 0.510592 1_1:+4062536 Msa0002210:three_prime_UTR
ATCTTCAGCAAGATCCCAAA+AGG 0.519575 1_1:+4062404 Msa0002210:CDS
TAAAATAACACGAATCATCA+GGG 0.539819 1_1:-4062740 None:intergenic
CATACCAGCAAAGTTAATCA+AGG 0.542205 1_1:-4062621 None:intergenic
ATCCCAAAAGGTGTGTTGAA+AGG 0.543000 1_1:+4062416 Msa0002210:CDS
CACGCAAGGCAGAAAATCCT+CGG 0.571310 1_1:-4061662 None:intergenic
TCCAGTACCAATATCACGCA+AGG 0.574766 1_1:-4061676 None:intergenic
AGTTTGTAGAATGTGTGCTC+CGG 0.579104 1_1:+4062452 Msa0002210:three_prime_UTR
TCCAATTGTTCATCTTCCTG+AGG 0.588534 1_1:+4061596 Msa0002210:CDS
CGAGGACAAGATAGACCCTC+TGG 0.598470 1_1:+4062316 Msa0002210:CDS
CAACAATCGACAGAATCCAC+AGG 0.623018 1_1:-4062127 None:intergenic
TGAACAATTGGAATGTGAGG+TGG 0.647379 1_1:-4061585 None:intergenic
TCGTACTTGTCATACACGAA+AGG 0.653781 1_1:-4062296 None:intergenic
ATTCTTACATATGTAGAACA+GGG 0.654822 1_1:-4062171 None:intergenic
TTGAGAATTGAAATCAACCG+AGG 0.656314 1_1:+4061645 Msa0002210:CDS
AGATGAACAATTGGAATGTG+AGG 0.665708 1_1:-4061588 None:intergenic
TTTCGTGTATGACAAGTACG+AGG 0.772122 1_1:+4062298 Msa0002210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTTAAGTAATTATAGT+TGG - chr1_1:4061850-4061869 None:intergenic 10.0%
!!! TTTTGATTGATTAAAATATT+TGG + chr1_1:4062676-4062695 Msa0002210:three_prime_UTR 10.0%
!! TTTGATTGATTAAAATATTT+GGG + chr1_1:4062677-4062696 Msa0002210:three_prime_UTR 10.0%
!! ATTATTTAAGTAATTATAGT+TGG - chr1_1:4061850-4061869 None:intergenic 10.0%
!!! TTTTGATTGATTAAAATATT+TGG + chr1_1:4062676-4062695 Msa0002210:three_prime_UTR 10.0%
!! TTTGATTGATTAAAATATTT+GGG + chr1_1:4062677-4062696 Msa0002210:three_prime_UTR 10.0%
!!! GTAGTTTAAAATTTTGAAAA+TGG + chr1_1:4062564-4062583 Msa0002210:three_prime_UTR 15.0%
!!! AATTTTGAAAATGGATTTAT+TGG + chr1_1:4062573-4062592 Msa0002210:three_prime_UTR 15.0%
!!! GTAGTTTAAAATTTTGAAAA+TGG + chr1_1:4062564-4062583 Msa0002210:three_prime_UTR 15.0%
!!! AATTTTGAAAATGGATTTAT+TGG + chr1_1:4062573-4062592 Msa0002210:three_prime_UTR 15.0%
! TTCATAAGTGAATGAATGAT+GGG + chr1_1:4061811-4061830 Msa0002210:intron 25.0%
!! ATGTTGTGTTAGGTAATTTT+TGG + chr1_1:4062104-4062123 Msa0002210:intron 25.0%
! ATTCTTACATATGTAGAACA+GGG - chr1_1:4062174-4062193 None:intergenic 25.0%
! TATTCTTACATATGTAGAAC+AGG - chr1_1:4062175-4062194 None:intergenic 25.0%
! AAACGTATAAACAGTTTGAT+AGG - chr1_1:4062201-4062220 None:intergenic 25.0%
!!! ATACTGTTTTTTAATCTCGA+TGG - chr1_1:4062354-4062373 None:intergenic 25.0%
!!! GTCTTAACTGTTTTTATACT+TGG + chr1_1:4062497-4062516 Msa0002210:three_prime_UTR 25.0%
!!! TTTTATACTTGGCCTTTTTT+TGG + chr1_1:4062508-4062527 Msa0002210:three_prime_UTR 25.0%
! TTCATAAGTGAATGAATGAT+GGG + chr1_1:4061811-4061830 Msa0002210:intron 25.0%
!! ATGTTGTGTTAGGTAATTTT+TGG + chr1_1:4062104-4062123 Msa0002210:intron 25.0%
! ATTCTTACATATGTAGAACA+GGG - chr1_1:4062174-4062193 None:intergenic 25.0%
! TATTCTTACATATGTAGAAC+AGG - chr1_1:4062175-4062194 None:intergenic 25.0%
! AAACGTATAAACAGTTTGAT+AGG - chr1_1:4062201-4062220 None:intergenic 25.0%
!!! ATACTGTTTTTTAATCTCGA+TGG - chr1_1:4062354-4062373 None:intergenic 25.0%
!!! GTCTTAACTGTTTTTATACT+TGG + chr1_1:4062497-4062516 Msa0002210:three_prime_UTR 25.0%
!!! TTTTATACTTGGCCTTTTTT+TGG + chr1_1:4062508-4062527 Msa0002210:three_prime_UTR 25.0%
! TTATTGACTAGAAAGTTCAC+AGG - chr1_1:4061734-4061753 None:intergenic 30.0%
CTTCATAAGTGAATGAATGA+TGG + chr1_1:4061810-4061829 Msa0002210:intron 30.0%
TCATAAGTGAATGAATGATG+GGG + chr1_1:4061812-4061831 Msa0002210:intron 30.0%
CTTCATAAGTGAATGAATGA+CGG + chr1_1:4061810-4061829 Msa0002210:intron 30.0%
TTCATAAGTGAATGAATGAC+GGG + chr1_1:4061935-4061954 Msa0002210:intron 30.0%
!! TTTGTTGTTGATGTTGTGTT+AGG + chr1_1:4062094-4062113 Msa0002210:intron 30.0%
!!! AGCTTTTGTTTTGTTGTTCA+CGG + chr1_1:4062271-4062290 Msa0002210:intron 30.0%
! TTATTGACTAGAAAGTTCAC+AGG - chr1_1:4061734-4061753 None:intergenic 30.0%
CTTCATAAGTGAATGAATGA+TGG + chr1_1:4061810-4061829 Msa0002210:intron 30.0%
TCATAAGTGAATGAATGATG+GGG + chr1_1:4061812-4061831 Msa0002210:intron 30.0%
CTTCATAAGTGAATGAATGA+CGG + chr1_1:4061810-4061829 Msa0002210:intron 30.0%
TTCATAAGTGAATGAATGAC+GGG + chr1_1:4061935-4061954 Msa0002210:intron 30.0%
!! TTTGTTGTTGATGTTGTGTT+AGG + chr1_1:4062094-4062113 Msa0002210:intron 30.0%
!!! AGCTTTTGTTTTGTTGTTCA+CGG + chr1_1:4062271-4062290 Msa0002210:intron 30.0%
AGATGAACAATTGGAATGTG+AGG - chr1_1:4061591-4061610 None:intergenic 35.0%
TTGAGAATTGAAATCAACCG+AGG + chr1_1:4061645-4061664 Msa0002210:CDS 35.0%
CATAAGTGAATGAATGATGG+GGG + chr1_1:4061813-4061832 Msa0002210:intron 35.0%
TCATAAGTGAATGAATGACG+GGG + chr1_1:4061936-4061955 Msa0002210:intron 35.0%
AACAACAAAATCCTTAGCAG+TGG - chr1_1:4062083-4062102 None:intergenic 35.0%
! TTCCTTTCAACACACCTTTT+GGG - chr1_1:4062421-4062440 None:intergenic 35.0%
! TTTCCTTTCAACACACCTTT+TGG - chr1_1:4062422-4062441 None:intergenic 35.0%
!!! GCCTTTTTTTGGATTGTTCT+AGG + chr1_1:4062519-4062538 Msa0002210:three_prime_UTR 35.0%
GCCTAGAACAATCCAAAAAA+AGG - chr1_1:4062523-4062542 None:intergenic 35.0%
!! TTCTAGGCAGTATTGATACT+TGG + chr1_1:4062535-4062554 Msa0002210:three_prime_UTR 35.0%
!! TCTAGGCAGTATTGATACTT+GGG + chr1_1:4062536-4062555 Msa0002210:three_prime_UTR 35.0%
! GATTTATTGGCTACTCTGTT+TGG + chr1_1:4062586-4062605 Msa0002210:three_prime_UTR 35.0%
TAGTCCTTGATTAACTTTGC+TGG + chr1_1:4062617-4062636 Msa0002210:three_prime_UTR 35.0%
CATACCAGCAAAGTTAATCA+AGG - chr1_1:4062624-4062643 None:intergenic 35.0%
AGATGAACAATTGGAATGTG+AGG - chr1_1:4061591-4061610 None:intergenic 35.0%
TTGAGAATTGAAATCAACCG+AGG + chr1_1:4061645-4061664 Msa0002210:CDS 35.0%
CATAAGTGAATGAATGATGG+GGG + chr1_1:4061813-4061832 Msa0002210:intron 35.0%
TCATAAGTGAATGAATGACG+GGG + chr1_1:4061936-4061955 Msa0002210:intron 35.0%
AACAACAAAATCCTTAGCAG+TGG - chr1_1:4062083-4062102 None:intergenic 35.0%
! TTCCTTTCAACACACCTTTT+GGG - chr1_1:4062421-4062440 None:intergenic 35.0%
! TTTCCTTTCAACACACCTTT+TGG - chr1_1:4062422-4062441 None:intergenic 35.0%
!!! GCCTTTTTTTGGATTGTTCT+AGG + chr1_1:4062519-4062538 Msa0002210:three_prime_UTR 35.0%
GCCTAGAACAATCCAAAAAA+AGG - chr1_1:4062523-4062542 None:intergenic 35.0%
!! TTCTAGGCAGTATTGATACT+TGG + chr1_1:4062535-4062554 Msa0002210:three_prime_UTR 35.0%
!! TCTAGGCAGTATTGATACTT+GGG + chr1_1:4062536-4062555 Msa0002210:three_prime_UTR 35.0%
! GATTTATTGGCTACTCTGTT+TGG + chr1_1:4062586-4062605 Msa0002210:three_prime_UTR 35.0%
TAGTCCTTGATTAACTTTGC+TGG + chr1_1:4062617-4062636 Msa0002210:three_prime_UTR 35.0%
CATACCAGCAAAGTTAATCA+AGG - chr1_1:4062624-4062643 None:intergenic 35.0%
TGAACAATTGGAATGTGAGG+TGG - chr1_1:4061588-4061607 None:intergenic 40.0%
TCCAATTGTTCATCTTCCTG+AGG + chr1_1:4061596-4061615 Msa0002210:CDS 40.0%
TCCTCAGGAAGATGAACAAT+TGG - chr1_1:4061600-4061619 None:intergenic 40.0%
! TTTTCTGCCTTGCGTGATAT+TGG + chr1_1:4061669-4061688 Msa0002210:CDS 40.0%
TTCACAGGTTACGTACAATG+AGG - chr1_1:4061719-4061738 None:intergenic 40.0%
CATAAGTGAATGAATGACGG+GGG + chr1_1:4061937-4061956 Msa0002210:intron 40.0%
! ATAAGTGAATGAATGACGGG+GGG + chr1_1:4061938-4061957 Msa0002210:intron 40.0%
CATGTTATTGACCACTGCTA+AGG + chr1_1:4062069-4062088 Msa0002210:intron 40.0%
!!! GTTAGGTAATTTTTGGCCTG+TGG + chr1_1:4062111-4062130 Msa0002210:intron 40.0%
! TGTGGATTCTGTCGATTGTT+GGG + chr1_1:4062129-4062148 Msa0002210:CDS 40.0%
TCGTACTTGTCATACACGAA+AGG - chr1_1:4062299-4062318 None:intergenic 40.0%
TTTCGTGTATGACAAGTACG+AGG + chr1_1:4062298-4062317 Msa0002210:CDS 40.0%
GTATGCTGTGTTTGACGAAA+AGG + chr1_1:4062370-4062389 Msa0002210:CDS 40.0%
ATCTTCAGCAAGATCCCAAA+AGG + chr1_1:4062404-4062423 Msa0002210:CDS 40.0%
! ATCCCAAAAGGTGTGTTGAA+AGG + chr1_1:4062416-4062435 Msa0002210:CDS 40.0%
AGTTTGTAGAATGTGTGCTC+CGG + chr1_1:4062452-4062471 Msa0002210:three_prime_UTR 40.0%
!!! AGCCTCTTTTTTCTTCTAGC+CGG - chr1_1:4062474-4062493 None:intergenic 40.0%
TTCGTGCTGCGAAAAATGTT+TGG + chr1_1:4062710-4062729 Msa0002210:three_prime_UTR 40.0%
TGAACAATTGGAATGTGAGG+TGG - chr1_1:4061588-4061607 None:intergenic 40.0%
TCCAATTGTTCATCTTCCTG+AGG + chr1_1:4061596-4061615 Msa0002210:CDS 40.0%
TCCTCAGGAAGATGAACAAT+TGG - chr1_1:4061600-4061619 None:intergenic 40.0%
! TTTTCTGCCTTGCGTGATAT+TGG + chr1_1:4061669-4061688 Msa0002210:CDS 40.0%
TTCACAGGTTACGTACAATG+AGG - chr1_1:4061719-4061738 None:intergenic 40.0%
CATAAGTGAATGAATGACGG+GGG + chr1_1:4061937-4061956 Msa0002210:intron 40.0%
! ATAAGTGAATGAATGACGGG+GGG + chr1_1:4061938-4061957 Msa0002210:intron 40.0%
CATGTTATTGACCACTGCTA+AGG + chr1_1:4062069-4062088 Msa0002210:intron 40.0%
!!! GTTAGGTAATTTTTGGCCTG+TGG + chr1_1:4062111-4062130 Msa0002210:intron 40.0%
! TGTGGATTCTGTCGATTGTT+GGG + chr1_1:4062129-4062148 Msa0002210:CDS 40.0%
TCGTACTTGTCATACACGAA+AGG - chr1_1:4062299-4062318 None:intergenic 40.0%
TTTCGTGTATGACAAGTACG+AGG + chr1_1:4062298-4062317 Msa0002210:CDS 40.0%
GTATGCTGTGTTTGACGAAA+AGG + chr1_1:4062370-4062389 Msa0002210:CDS 40.0%
ATCTTCAGCAAGATCCCAAA+AGG + chr1_1:4062404-4062423 Msa0002210:CDS 40.0%
! ATCCCAAAAGGTGTGTTGAA+AGG + chr1_1:4062416-4062435 Msa0002210:CDS 40.0%
AGTTTGTAGAATGTGTGCTC+CGG + chr1_1:4062452-4062471 Msa0002210:three_prime_UTR 40.0%
!!! AGCCTCTTTTTTCTTCTAGC+CGG - chr1_1:4062474-4062493 None:intergenic 40.0%
TTCGTGCTGCGAAAAATGTT+TGG + chr1_1:4062710-4062729 Msa0002210:three_prime_UTR 40.0%
ATCTGCAGAAATGGTTCCTC+AGG - chr1_1:4061615-4061634 None:intergenic 45.0%
GCAGAAGCAATCTGCAGAAA+TGG - chr1_1:4061624-4061643 None:intergenic 45.0%
TCCAGTACCAATATCACGCA+AGG - chr1_1:4061679-4061698 None:intergenic 45.0%
CAACAATCGACAGAATCCAC+AGG - chr1_1:4062130-4062149 None:intergenic 45.0%
! CTGTGGATTCTGTCGATTGT+TGG + chr1_1:4062128-4062147 Msa0002210:CDS 45.0%
CTCCGGCTAGAAGAAAAAAG+AGG + chr1_1:4062469-4062488 Msa0002210:three_prime_UTR 45.0%
ATCTGCAGAAATGGTTCCTC+AGG - chr1_1:4061615-4061634 None:intergenic 45.0%
GCAGAAGCAATCTGCAGAAA+TGG - chr1_1:4061624-4061643 None:intergenic 45.0%
TCCAGTACCAATATCACGCA+AGG - chr1_1:4061679-4061698 None:intergenic 45.0%
CAACAATCGACAGAATCCAC+AGG - chr1_1:4062130-4062149 None:intergenic 45.0%
! CTGTGGATTCTGTCGATTGT+TGG + chr1_1:4062128-4062147 Msa0002210:CDS 45.0%
CTCCGGCTAGAAGAAAAAAG+AGG + chr1_1:4062469-4062488 Msa0002210:three_prime_UTR 45.0%
CACGCAAGGCAGAAAATCCT+CGG - chr1_1:4061665-4061684 None:intergenic 50.0%
GCCTTGCGTGATATTGGTAC+TGG + chr1_1:4061675-4061694 Msa0002210:CDS 50.0%
! TTCTGTCGATTGTTGGGAGC+TGG + chr1_1:4062135-4062154 Msa0002210:CDS 50.0%
GATAGACCCTCTGGCAGAAA+AGG + chr1_1:4062325-4062344 Msa0002210:CDS 50.0%
! TGGATGCCTTTTCTGCCAGA+GGG - chr1_1:4062334-4062353 None:intergenic 50.0%
! ATGGATGCCTTTTCTGCCAG+AGG - chr1_1:4062335-4062354 None:intergenic 50.0%
CACGCAAGGCAGAAAATCCT+CGG - chr1_1:4061665-4061684 None:intergenic 50.0%
GCCTTGCGTGATATTGGTAC+TGG + chr1_1:4061675-4061694 Msa0002210:CDS 50.0%
! TTCTGTCGATTGTTGGGAGC+TGG + chr1_1:4062135-4062154 Msa0002210:CDS 50.0%
GATAGACCCTCTGGCAGAAA+AGG + chr1_1:4062325-4062344 Msa0002210:CDS 50.0%
! TGGATGCCTTTTCTGCCAGA+GGG - chr1_1:4062334-4062353 None:intergenic 50.0%
! ATGGATGCCTTTTCTGCCAG+AGG - chr1_1:4062335-4062354 None:intergenic 50.0%
CGAGGACAAGATAGACCCTC+TGG + chr1_1:4062316-4062335 Msa0002210:CDS 55.0%
CGAGGACAAGATAGACCCTC+TGG + chr1_1:4062316-4062335 Msa0002210:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 4061576 4062754 4061576 ID=Msa0002210;Name=Msa0002210
chr1_1 mRNA 4061576 4062754 4061576 ID=Msa0002210-mRNA-1;Parent=Msa0002210;Name=Msa0002210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.66|1|1|1|3|303|131
chr1_1 exon 4061576 4061722 4061576 ID=Msa0002210-mRNA-1:exon:1194;Parent=Msa0002210-mRNA-1
chr1_1 exon 4062116 4062185 4062116 ID=Msa0002210-mRNA-1:exon:1195;Parent=Msa0002210-mRNA-1
chr1_1 exon 4062273 4062754 4062273 ID=Msa0002210-mRNA-1:exon:1196;Parent=Msa0002210-mRNA-1
chr1_1 CDS 4061576 4061722 4061576 ID=Msa0002210-mRNA-1:cds;Parent=Msa0002210-mRNA-1
chr1_1 CDS 4062116 4062185 4062116 ID=Msa0002210-mRNA-1:cds;Parent=Msa0002210-mRNA-1
chr1_1 CDS 4062273 4062451 4062273 ID=Msa0002210-mRNA-1:cds;Parent=Msa0002210-mRNA-1
chr1_1 three_prime_UTR 4062452 4062754 4062452 ID=Msa0002210-mRNA-1:three_prime_utr;Parent=Msa0002210-mRNA-1
Gene Sequence

>Msa0002210

TGTAGGACTCCACCTCACATTCCAATTGTTCATCTTCCTGAGGAACCATTTCTGCAGATTGCTTCTGCATTGAGAATTGAAATCAACCGAGGATTTTCTGCCTTGCGTGATATTGGTACTGGAAAAGATGTGAAGAAATTCCTCATTGTAATTTTTGGCCTGTGGATTCTGTCGATTGTTGGGAGCTGGAGCAATTTCTTAACCCTGTTCTACATATCTTTTGTTTTGTTGTTCACGGTGCCTTTCGTGTATGACAAGTACGAGGACAAGATAGACCCTCTGGCAGAAAAGGCATCCATCGAGATTAAAAAACAGTATGCTGTGTTTGACGAAAAGGTCTTGAGCAAGATCTTCAGCAAGATCCCAAAAGGTGTGTTGAAAGGAAAATTAGCTTAG
Protein sequence

>Msa0002210

CRTPPHIPIVHLPEEPFLQIASALRIEINRGFSALRDIGTGKDVKKFLIVIFGLWILSIVGSWSNFLTLFYISFVLLFTVPFVYDKYEDKIDPLAEKASIEIKKQYAVFDEKVLSKIFSKIPKGVLKGKLA*