Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317630 | sp|O82352|RTNLE_ARATH | 60.456 | 263 | 92 | 3 | 1 | 263 | 1 | 251 | 7.03e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317630 | I3S2R5 | 96.629 | 267 | 7 | 1 | 1 | 265 | 1 | 267 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002210 | Msa1317630 | 0.859563 | 3.793348e-63 | -8.615850e-47 |
| Msa0002420 | Msa1317630 | 0.809448 | 1.882891e-50 | -8.615850e-47 |
| Msa0692790 | Msa1317630 | 0.837711 | 4.422905e-57 | -8.615850e-47 |
| Msa0209140 | Msa1317630 | 0.843292 | 1.532412e-58 | -8.615850e-47 |
| Msa0224110 | Msa1317630 | 0.817068 | 3.994926e-52 | -8.615850e-47 |
| Msa1257440 | Msa1317630 | 0.807183 | 5.723245e-50 | -8.615850e-47 |
| Msa1305250 | Msa1317630 | 0.804444 | 2.153827e-49 | -8.615850e-47 |
| Msa1317630 | Msa1373170 | 0.813307 | 2.735072e-51 | -8.615850e-47 |
| Msa1317630 | Msa1413620 | 0.838648 | 2.537561e-57 | -8.615850e-47 |
| Msa1317630 | Msa1441570 | 0.841048 | 6.018522e-58 | -8.615850e-47 |
| Msa0430230 | Msa1317630 | 0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0435570 | Msa1317630 | 0.802037 | 6.783295e-49 | -8.615850e-47 |
| Msa0440430 | Msa1317630 | 0.838909 | 2.172743e-57 | -8.615850e-47 |
| Msa0326710 | Msa1317630 | 0.811564 | 6.573371e-51 | -8.615850e-47 |
| Msa1165090 | Msa1317630 | 0.819430 | 1.166041e-52 | -8.615850e-47 |
| Msa1177520 | Msa1317630 | 0.841703 | 4.046703e-58 | -8.615850e-47 |
| Msa1207190 | Msa1317630 | 0.801681 | 8.028603e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317630 | MtrunA17_Chr8g0348131 | 96.629 | 267 | 7 | 1 | 1 | 265 | 1 | 267 | 0.0 | 511 |
| Msa1317630 | MtrunA17_Chr8g0387631 | 65.038 | 266 | 81 | 3 | 1 | 263 | 1 | 257 | 2.16e-112 | 324 |
| Msa1317630 | MtrunA17_Chr1g0202401 | 57.627 | 236 | 98 | 1 | 18 | 251 | 7 | 242 | 2.42e-93 | 275 |
| Msa1317630 | MtrunA17_Chr3g0095441 | 44.000 | 225 | 124 | 1 | 22 | 244 | 3 | 227 | 3.42e-63 | 198 |
| Msa1317630 | MtrunA17_Chr5g0442361 | 44.286 | 210 | 111 | 2 | 51 | 258 | 33 | 238 | 7.07e-57 | 182 |
| Msa1317630 | MtrunA17_Chr8g0376101 | 35.345 | 232 | 135 | 2 | 32 | 263 | 4 | 220 | 8.29e-47 | 155 |
| Msa1317630 | MtrunA17_Chr1g0209261 | 37.255 | 204 | 118 | 3 | 60 | 263 | 10 | 203 | 1.03e-43 | 147 |
| Msa1317630 | MtrunA17_Chr3g0108661 | 35.652 | 230 | 133 | 2 | 28 | 250 | 16 | 237 | 5.50e-41 | 141 |
| Msa1317630 | MtrunA17_Chr4g0005701 | 34.715 | 193 | 126 | 0 | 59 | 251 | 6 | 198 | 2.45e-33 | 120 |
| Msa1317630 | MtrunA17_Chr5g0402811 | 35.870 | 184 | 118 | 0 | 72 | 255 | 29 | 212 | 4.93e-30 | 112 |
| Msa1317630 | MtrunA17_Chr6g0453331 | 35.912 | 181 | 116 | 0 | 77 | 257 | 14 | 194 | 1.75e-28 | 107 |
| Msa1317630 | MtrunA17_Chr1g0208091 | 34.171 | 199 | 127 | 1 | 67 | 265 | 9 | 203 | 1.36e-22 | 92.4 |
| Msa1317630 | MtrunA17_Chr5g0402701 | 37.778 | 135 | 84 | 0 | 81 | 215 | 346 | 480 | 4.40e-19 | 86.3 |
| Msa1317630 | MtrunA17_Chr3g0136511 | 33.333 | 177 | 96 | 5 | 63 | 226 | 368 | 535 | 4.21e-13 | 68.9 |
| Msa1317630 | MtrunA17_Chr5g0402691 | 32.836 | 134 | 89 | 1 | 81 | 213 | 283 | 416 | 7.19e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317630 | AT2G46170.1 | 60.456 | 263 | 92 | 3 | 1 | 263 | 1 | 251 | 7.15e-108 | 312 |
| Msa1317630 | AT4G23630.1 | 71.498 | 207 | 55 | 1 | 57 | 263 | 70 | 272 | 1.24e-107 | 313 |
| Msa1317630 | AT4G23630.2 | 71.498 | 207 | 55 | 1 | 57 | 263 | 70 | 272 | 1.24e-107 | 313 |
| Msa1317630 | AT5G41600.1 | 62.302 | 252 | 94 | 1 | 13 | 263 | 4 | 255 | 9.32e-105 | 305 |
| Msa1317630 | AT4G11220.1 | 58.456 | 272 | 100 | 3 | 1 | 263 | 1 | 268 | 6.78e-103 | 300 |
| Msa1317630 | AT1G64090.1 | 63.485 | 241 | 85 | 1 | 18 | 258 | 9 | 246 | 1.01e-102 | 300 |
| Msa1317630 | AT3G61560.1 | 59.623 | 265 | 95 | 3 | 1 | 265 | 1 | 253 | 4.77e-101 | 295 |
| Msa1317630 | AT3G61560.2 | 59.623 | 265 | 95 | 3 | 1 | 265 | 1 | 253 | 4.77e-101 | 295 |
| Msa1317630 | AT1G64090.2 | 59.144 | 257 | 86 | 2 | 18 | 258 | 9 | 262 | 1.47e-97 | 287 |
| Msa1317630 | AT3G61560.3 | 59.903 | 207 | 75 | 2 | 1 | 207 | 1 | 199 | 1.25e-77 | 234 |
| Msa1317630 | AT2G46170.2 | 58.378 | 185 | 69 | 2 | 1 | 185 | 1 | 177 | 3.15e-69 | 212 |
| Msa1317630 | AT4G01230.2 | 50.754 | 199 | 95 | 1 | 53 | 251 | 47 | 242 | 1.27e-66 | 207 |
| Msa1317630 | AT4G01230.1 | 49.246 | 199 | 96 | 2 | 53 | 251 | 47 | 240 | 3.91e-62 | 196 |
| Msa1317630 | AT3G10260.1 | 42.786 | 201 | 115 | 0 | 51 | 251 | 36 | 236 | 5.08e-60 | 191 |
| Msa1317630 | AT3G10260.2 | 42.786 | 201 | 115 | 0 | 51 | 251 | 36 | 236 | 5.08e-60 | 191 |
| Msa1317630 | AT3G10260.3 | 42.786 | 201 | 115 | 0 | 51 | 251 | 56 | 256 | 7.59e-60 | 191 |
| Msa1317630 | AT3G18260.1 | 36.957 | 230 | 131 | 2 | 34 | 263 | 7 | 222 | 1.99e-50 | 165 |
| Msa1317630 | AT3G10915.2 | 32.420 | 219 | 144 | 2 | 33 | 251 | 2 | 216 | 1.54e-37 | 132 |
| Msa1317630 | AT2G15280.1 | 34.536 | 194 | 121 | 2 | 64 | 254 | 2 | 192 | 7.89e-37 | 129 |
| Msa1317630 | AT3G10915.7 | 32.474 | 194 | 131 | 0 | 58 | 251 | 48 | 241 | 4.26e-36 | 129 |
| Msa1317630 | AT3G10915.4 | 32.273 | 220 | 144 | 3 | 33 | 251 | 2 | 217 | 7.71e-36 | 127 |
| Msa1317630 | AT1G68230.2 | 37.436 | 195 | 112 | 3 | 71 | 263 | 26 | 212 | 2.73e-33 | 120 |
| Msa1317630 | AT3G10915.5 | 29.032 | 248 | 149 | 4 | 33 | 257 | 2 | 245 | 3.38e-30 | 114 |
| Msa1317630 | AT3G19460.1 | 35.220 | 159 | 103 | 0 | 68 | 226 | 14 | 172 | 9.37e-29 | 108 |
| Msa1317630 | AT3G19460.5 | 35.220 | 159 | 103 | 0 | 68 | 226 | 14 | 172 | 9.37e-29 | 108 |
| Msa1317630 | AT3G19460.4 | 35.220 | 159 | 103 | 0 | 68 | 226 | 14 | 172 | 9.37e-29 | 108 |
| Msa1317630 | AT3G10915.6 | 30.114 | 176 | 123 | 0 | 76 | 251 | 9 | 184 | 2.76e-27 | 104 |
| Msa1317630 | AT3G10915.3 | 30.114 | 176 | 123 | 0 | 76 | 251 | 8 | 183 | 5.63e-27 | 103 |
| Msa1317630 | AT3G54120.1 | 35.329 | 167 | 108 | 0 | 59 | 225 | 7 | 173 | 3.00e-24 | 97.1 |
| Msa1317630 | AT3G19460.3 | 29.534 | 193 | 102 | 1 | 68 | 226 | 14 | 206 | 2.86e-22 | 92.4 |
| Msa1317630 | AT3G19460.7 | 29.534 | 193 | 102 | 1 | 68 | 226 | 14 | 206 | 2.86e-22 | 92.4 |
| Msa1317630 | AT1G68230.1 | 38.406 | 138 | 79 | 2 | 71 | 206 | 26 | 159 | 2.86e-21 | 88.2 |
| Msa1317630 | AT2G23640.1 | 26.316 | 171 | 126 | 0 | 78 | 248 | 18 | 188 | 2.17e-19 | 84.0 |
| Msa1317630 | AT3G10915.1 | 31.373 | 153 | 101 | 2 | 33 | 185 | 2 | 150 | 6.86e-19 | 81.6 |
| Msa1317630 | AT3G19460.2 | 28.804 | 184 | 97 | 1 | 77 | 226 | 7 | 190 | 6.86e-19 | 83.2 |
| Msa1317630 | AT3G19460.6 | 28.804 | 184 | 97 | 1 | 77 | 226 | 7 | 190 | 6.86e-19 | 83.2 |
| Msa1317630 | AT2G15280.2 | 29.915 | 117 | 82 | 0 | 64 | 180 | 2 | 118 | 1.50e-17 | 78.2 |
| Msa1317630 | AT2G01240.1 | 31.655 | 139 | 85 | 3 | 121 | 258 | 1 | 130 | 1.72e-11 | 60.8 |
Find 68 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATTGATTAAAATATT+TGG | 0.138291 | 8_4:-19074728 | Msa1317630:three_prime_UTR |
| CATTTGTCACATTTCGATTC+TGG | 0.146999 | 8_4:-19076013 | Msa1317630:CDS |
| TCGGGACAGCAACTGCTATT+TGG | 0.157804 | 8_4:-19076074 | Msa1317630:CDS |
| TTTCCTTTCAACACACCTTT+TGG | 0.257041 | 8_4:+19074985 | None:intergenic |
| TTCTGATTCTCATTCTGATT+TGG | 0.273750 | 8_4:-19077005 | Msa1317630:CDS |
| GTTGATTGATTAAAATATTT+GGG | 0.294747 | 8_4:-19074727 | Msa1317630:three_prime_UTR |
| CGGGACAGCAACTGCTATTT+GGG | 0.323494 | 8_4:-19076073 | Msa1317630:CDS |
| TAGTCCTTGATTAACTTTGC+TGG | 0.325176 | 8_4:-19074787 | Msa1317630:three_prime_UTR |
| GATTTATTGGCTACTCTGTT+TGG | 0.331987 | 8_4:-19074818 | Msa1317630:three_prime_UTR |
| TTAAAATAACACGAATCATC+AGG | 0.341305 | 8_4:+19074663 | None:intergenic |
| CAGGCTTCTCCCTTCCAAAA+AGG | 0.354297 | 8_4:+19076939 | None:intergenic |
| TCCTTCACCGATTCAATAAC+CGG | 0.358423 | 8_4:+19076974 | None:intergenic |
| CACCGAGAAGCTTCACTTTG+AGG | 0.367936 | 8_4:-19077044 | Msa1317630:CDS |
| TTCTAGGCAGTATTGATACT+TGG | 0.392877 | 8_4:-19074869 | Msa1317630:three_prime_UTR |
| ATCCTCAAAGTGAAGCTTCT+CGG | 0.394266 | 8_4:+19077042 | None:intergenic |
| TATTCTTACATATGTAGAAC+AGG | 0.397072 | 8_4:+19075233 | None:intergenic |
| AGAGAGTGCAGTGTGGTTAG+AGG | 0.407806 | 8_4:+19077211 | None:intergenic |
| GCAGAAGCAATCTGCAGAAA+TGG | 0.411515 | 8_4:+19075784 | None:intergenic |
| TTCTGATTTGGATAAGAAAC+CGG | 0.414962 | 8_4:-19076993 | Msa1317630:CDS |
| CTGTGGATTCTGTCGATTGT+TGG | 0.422020 | 8_4:-19075277 | Msa1317630:CDS |
| TCAACGAAACCCTAAATCTC+AGG | 0.422908 | 8_4:+19077141 | None:intergenic |
| TTCTGTCGATTGTTGGGAGC+TGG | 0.437564 | 8_4:-19075270 | Msa1317630:CDS |
| TGTGGATTCTGTCGATTGTT+GGG | 0.439036 | 8_4:-19075276 | Msa1317630:CDS |
| TCCTCGGGAAGATGAACAAT+TGG | 0.453205 | 8_4:+19075808 | None:intergenic |
| GCCTTGCGTGATATTGGTAC+TGG | 0.456671 | 8_4:-19075730 | Msa1317630:CDS |
| GATAGACCCTCTGGCAGAAA+AGG | 0.457105 | 8_4:-19075079 | Msa1317630:CDS |
| GTATGCTGTGTTTGACGAAA+AGG | 0.466260 | 8_4:-19075034 | Msa1317630:CDS |
| ATCTGCAGAAATGGTTCCTC+GGG | 0.475440 | 8_4:+19075793 | None:intergenic |
| AAGCCTGTTCATTCCGTCCT+CGG | 0.480171 | 8_4:-19076923 | Msa1317630:CDS |
| TAAGAAACCGGTTATTGAAT+CGG | 0.485712 | 8_4:-19076981 | Msa1317630:CDS |
| AAGTTATCTGCTGGTACACT+CGG | 0.490344 | 8_4:-19076093 | Msa1317630:CDS |
| CAGCTGCTGATGTGTTCTTG+TGG | 0.506480 | 8_4:-19076125 | Msa1317630:CDS |
| TCTAGGCAGTATTGATACTT+GGG | 0.510592 | 8_4:-19074868 | Msa1317630:three_prime_UTR |
| ATCTTCAGCAAGATCCCAAA+AGG | 0.519575 | 8_4:-19075000 | Msa1317630:CDS |
| ATCAGAATGAGAATCAGAAT+CGG | 0.525151 | 8_4:+19077009 | None:intergenic |
| GTGAACAAAGGCATGAGCAT+TGG | 0.527273 | 8_4:+19075966 | None:intergenic |
| AATCTGCAGAAATGGTTCCT+CGG | 0.539562 | 8_4:+19075792 | None:intergenic |
| TAAAATAACACGAATCATCA+GGG | 0.539819 | 8_4:+19074664 | None:intergenic |
| CATACCAGCAAAGTTAATCA+AGG | 0.542205 | 8_4:+19074783 | None:intergenic |
| ATCCCAAAAGGTGTGTTGAA+AGG | 0.543000 | 8_4:-19074988 | Msa1317630:CDS |
| TATTGAATCGGTGAAGGAGA+AGG | 0.548952 | 8_4:-19076969 | Msa1317630:CDS |
| ACGCTTTCCGCCGCCGAGGA+CGG | 0.555526 | 8_4:+19076910 | None:intergenic |
| CACGCAAGGCAGAAAATCCT+CGG | 0.571310 | 8_4:+19075743 | None:intergenic |
| TCCAGTACCAATATCACGCA+AGG | 0.574766 | 8_4:+19075729 | None:intergenic |
| AGTTTGTAGAATGTGTGCTC+CGG | 0.579104 | 8_4:-19074952 | Msa1317630:three_prime_UTR |
| GGAGAAAAGCACCGTGACGG+TGG | 0.582541 | 8_4:-19077101 | Msa1317630:CDS |
| AAGAACAAGAAGTTATCTGC+TGG | 0.588642 | 8_4:-19076102 | Msa1317630:CDS |
| CGAGGACAAGATAGACCCTC+TGG | 0.598470 | 8_4:-19075088 | Msa1317630:CDS |
| ACCGGTTATTGAATCGGTGA+AGG | 0.598940 | 8_4:-19076975 | Msa1317630:CDS |
| GCCGTCACGATCCACCGTCA+CGG | 0.610496 | 8_4:+19077090 | None:intergenic |
| CAACAATCGACAGAATCCAC+AGG | 0.623018 | 8_4:+19075278 | None:intergenic |
| ATCGGAGAAAAGCACCGTGA+CGG | 0.632245 | 8_4:-19077104 | Msa1317630:CDS |
| TCCAATTGTTCATCTTCCCG+AGG | 0.636881 | 8_4:-19075809 | Msa1317630:CDS |
| AGAATGAGAATCAGAATCGG+AGG | 0.637771 | 8_4:+19077012 | None:intergenic |
| AGAGGCGAGAATCTCAGTGT+GGG | 0.638504 | 8_4:+19077229 | None:intergenic |
| AGTTATCTGCTGGTACACTC+GGG | 0.638812 | 8_4:-19076092 | Msa1317630:CDS |
| AGAGTCTTACTTGTGAACAA+AGG | 0.647132 | 8_4:+19075954 | None:intergenic |
| TGAACAATTGGAATGTGAGG+TGG | 0.647379 | 8_4:+19075820 | None:intergenic |
| AGATGAACAATTGGAATGTG+AGG | 0.652868 | 8_4:+19075817 | None:intergenic |
| TCGTACTTGTCATACACGAA+AGG | 0.653781 | 8_4:+19075108 | None:intergenic |
| ATTCTTACATATGTAGAACA+GGG | 0.654822 | 8_4:+19075234 | None:intergenic |
| TTGAGAATTGAAATCAACCG+AGG | 0.656314 | 8_4:-19075760 | Msa1317630:CDS |
| ACCGTGACGGTGGATCGTGA+CGG | 0.663353 | 8_4:-19077091 | Msa1317630:CDS |
| GTGACGGTGGATCGTGACGG+CGG | 0.663536 | 8_4:-19077088 | Msa1317630:CDS |
| CCTGTTCATTCCGTCCTCGG+CGG | 0.678189 | 8_4:-19076920 | Msa1317630:CDS |
| TCATACGCTTTCCGCCGCCG+AGG | 0.684893 | 8_4:+19076906 | None:intergenic |
| TAGAGGCGAGAATCTCAGTG+TGG | 0.697917 | 8_4:+19077228 | None:intergenic |
| TTTCGTGTATGACAAGTACG+AGG | 0.772122 | 8_4:-19075106 | Msa1317630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTAAGTAATTATAGT+TGG | + | chr8_4:19076312-19076331 | None:intergenic | 10.0% |
| !!! | ATTCAAAGATTTTTTTTTTG+AGG | + | chr8_4:19075379-19075398 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCTTTGAATCA+TGG | - | chr8_4:19075381-19075400 | Msa1317630:intron | 15.0% |
| !!! | AATATTTTGTAATGTTTTGT+AGG | - | chr8_4:19076021-19076040 | Msa1317630:CDS | 15.0% |
| !!! | GTAGTTTAAAATTTTGAAAA+TGG | - | chr8_4:19077027-19077046 | Msa1317630:CDS | 15.0% |
| !!! | AATTTTGAAAATGGATTTAT+TGG | - | chr8_4:19077036-19077055 | Msa1317630:CDS | 15.0% |
| !!! | TGTTGATTGATTAAAATATT+TGG | - | chr8_4:19077139-19077158 | Msa1317630:five_prime_UTR | 15.0% |
| !! | GTTGATTGATTAAAATATTT+GGG | - | chr8_4:19077140-19077159 | Msa1317630:five_prime_UTR | 15.0% |
| !!! | GTGTTATTTTAAAAATATCT+TGG | - | chr8_4:19077215-19077234 | Msa1317630:five_prime_UTR | 15.0% |
| !!! | TTTTAAAAATATCTTGGTAA+AGG | - | chr8_4:19077221-19077240 | Msa1317630:five_prime_UTR | 15.0% |
| !! | AAAAAAGGTTTGAAAATTGA+AGG | + | chr8_4:19074706-19074725 | None:intergenic | 20.0% |
| !! | AACAACTAAAACAATAAAGA+TGG | + | chr8_4:19074995-19075014 | None:intergenic | 20.0% |
| !!! | CTTTATTGTTTTAGTTGTTT+TGG | - | chr8_4:19074996-19075015 | Msa1317630:CDS | 20.0% |
| !! | GACTAGGTAAAAAAAATAAT+TGG | + | chr8_4:19075407-19075426 | None:intergenic | 20.0% |
| !!! | AACAAGAAAAAATATTGACT+AGG | + | chr8_4:19075423-19075442 | None:intergenic | 20.0% |
| !! | TAAATTGTATCTACGAAATT+TGG | - | chr8_4:19075481-19075500 | Msa1317630:intron | 20.0% |
| !! | AAATTGTATCTACGAAATTT+GGG | - | chr8_4:19075482-19075501 | Msa1317630:intron | 20.0% |
| !! | TTTATGTAAGATGTAAAACA+TGG | - | chr8_4:19075553-19075572 | Msa1317630:intron | 20.0% |
| !! | AAAAAAATCTCTTTCGGTTT+TGG | + | chr8_4:19074682-19074701 | None:intergenic | 25.0% |
| ! | GAAGGAAAAAAAATCTCTTT+CGG | + | chr8_4:19074688-19074707 | None:intergenic | 25.0% |
| ! | ATGTGAATGAAAATTGTGAT+TGG | - | chr8_4:19075077-19075096 | Msa1317630:CDS | 25.0% |
| !! | TTTGTGATCAATTTTTCTAG+TGG | - | chr8_4:19075182-19075201 | Msa1317630:intron | 25.0% |
| ! | TGAATTGTATCTATGAATCA+TGG | - | chr8_4:19075227-19075246 | Msa1317630:intron | 25.0% |
| ! | ATGTAAAACATGGTAATTTG+TGG | - | chr8_4:19075563-19075582 | Msa1317630:intron | 25.0% |
| !!! | ATTCTGACTTTTTAGTGTTA+TGG | - | chr8_4:19075595-19075614 | Msa1317630:intron | 25.0% |
| !!! | ATTTGGTTCTCTGTTTTTAT+TGG | - | chr8_4:19075626-19075645 | Msa1317630:intron | 25.0% |
| !! | AATTTCATCTCTTCTTTTAG+AGG | + | chr8_4:19075672-19075691 | None:intergenic | 25.0% |
| !!! | GAAGAGATGAAATTTTAGTT+TGG | - | chr8_4:19075678-19075697 | Msa1317630:intron | 25.0% |
| ! | TTCATAAGTGAATGAATGAT+GGG | - | chr8_4:19076273-19076292 | Msa1317630:intron | 25.0% |
| !! | ATGTTGTGTTAGGTAATTTT+TGG | - | chr8_4:19076566-19076585 | Msa1317630:intron | 25.0% |
| ! | ATTCTTACATATGTAGAACA+GGG | + | chr8_4:19076636-19076655 | None:intergenic | 25.0% |
| ! | TATTCTTACATATGTAGAAC+AGG | + | chr8_4:19076637-19076656 | None:intergenic | 25.0% |
| ! | AACGTATAAATCAGTTTGAT+AGG | + | chr8_4:19076663-19076682 | None:intergenic | 25.0% |
| !!! | ATACTGTTTTTTAATCTCGA+TGG | + | chr8_4:19076817-19076836 | None:intergenic | 25.0% |
| !!! | GTCTTAACTGTTTTTATACT+TGG | - | chr8_4:19076960-19076979 | Msa1317630:CDS | 25.0% |
| !!! | TTTTATACTTGGCCTTTTTT+TGG | - | chr8_4:19076971-19076990 | Msa1317630:CDS | 25.0% |
| ! | TAAAATAACACGAATCATCA+GGG | + | chr8_4:19077206-19077225 | None:intergenic | 25.0% |
| ! | TTAAAATAACACGAATCATC+AGG | + | chr8_4:19077207-19077226 | None:intergenic | 25.0% |
| !!! | AACCTTTTTTCCTGAGATTT+AGG | - | chr8_4:19074716-19074735 | Msa1317630:three_prime_UTR | 30.0% |
| !!! | ACCTTTTTTCCTGAGATTTA+GGG | - | chr8_4:19074717-19074736 | Msa1317630:three_prime_UTR | 30.0% |
| ! | TTTAGGGTTTCGTTGAAAAA+TGG | - | chr8_4:19074733-19074752 | Msa1317630:three_prime_UTR | 30.0% |
| ATCAGAATGAGAATCAGAAT+CGG | + | chr8_4:19074861-19074880 | None:intergenic | 30.0% | |
| TTCTGATTCTCATTCTGATT+TGG | - | chr8_4:19074862-19074881 | Msa1317630:three_prime_UTR | 30.0% | |
| !! | TTCTGATTTGGATAAGAAAC+CGG | - | chr8_4:19074874-19074893 | Msa1317630:three_prime_UTR | 30.0% |
| TAAGAAACCGGTTATTGAAT+CGG | - | chr8_4:19074886-19074905 | Msa1317630:three_prime_UTR | 30.0% | |
| ! | CTTTACCTCTGACATAATTT+TGG | - | chr8_4:19075343-19075362 | Msa1317630:intron | 30.0% |
| GTAATCCAAAATTATGTCAG+AGG | + | chr8_4:19075351-19075370 | None:intergenic | 30.0% | |
| ATTATTGCGTATTTGTCTGA+TGG | - | chr8_4:19075705-19075724 | Msa1317630:CDS | 30.0% | |
| TTATTGCGTATTTGTCTGAT+GGG | - | chr8_4:19075706-19075725 | Msa1317630:CDS | 30.0% | |
| !!! | TTCTTGCACTATTGTTTTTG+TGG | - | chr8_4:19075877-19075896 | Msa1317630:intron | 30.0% |
| ! | TTATTGACTAGAAAGTTCAC+AGG | + | chr8_4:19076196-19076215 | None:intergenic | 30.0% |
| CTTCATAAGTGAATGAATGA+TGG | - | chr8_4:19076272-19076291 | Msa1317630:intron | 30.0% | |
| TCATAAGTGAATGAATGATG+GGG | - | chr8_4:19076274-19076293 | Msa1317630:intron | 30.0% | |
| CTTCATAAGTGAATGAATGA+CGG | - | chr8_4:19076272-19076291 | Msa1317630:intron | 30.0% | |
| TTCATAAGTGAATGAATGAC+GGG | - | chr8_4:19076397-19076416 | Msa1317630:intron | 30.0% | |
| !! | TTTGTTGTTGATGTTGTGTT+AGG | - | chr8_4:19076556-19076575 | Msa1317630:intron | 30.0% |
| !!! | AGCTTTTGTTTTGTTGTTCA+CGG | - | chr8_4:19076734-19076753 | Msa1317630:intron | 30.0% |
| ACCCTAAATCTCAGGAAAAA+AGG | + | chr8_4:19074721-19074740 | None:intergenic | 35.0% | |
| TTGAAAAATGGCTGACGAAT+CGG | - | chr8_4:19074745-19074764 | Msa1317630:three_prime_UTR | 35.0% | |
| ! | GTGTTATGGTATTGCTGATT+TGG | - | chr8_4:19075609-19075628 | Msa1317630:intron | 35.0% |
| AAGAACAAGAAGTTATCTGC+TGG | - | chr8_4:19075765-19075784 | Msa1317630:CDS | 35.0% | |
| CATTTGTCACATTTCGATTC+TGG | - | chr8_4:19075854-19075873 | Msa1317630:intron | 35.0% | |
| AGAGTCTTACTTGTGAACAA+AGG | + | chr8_4:19075916-19075935 | None:intergenic | 35.0% | |
| TATTCATCACATGCAGCAAA+TGG | + | chr8_4:19075995-19076014 | None:intergenic | 35.0% | |
| AGATGAACAATTGGAATGTG+AGG | + | chr8_4:19076053-19076072 | None:intergenic | 35.0% | |
| TTGAGAATTGAAATCAACCG+AGG | - | chr8_4:19076107-19076126 | Msa1317630:CDS | 35.0% | |
| CATAAGTGAATGAATGATGG+GGG | - | chr8_4:19076275-19076294 | Msa1317630:intron | 35.0% | |
| TCATAAGTGAATGAATGACG+GGG | - | chr8_4:19076398-19076417 | Msa1317630:intron | 35.0% | |
| AACAACAAAATCCTTAGCAG+TGG | + | chr8_4:19076545-19076564 | None:intergenic | 35.0% | |
| ! | TTCCTTTCAACACACCTTTT+GGG | + | chr8_4:19076884-19076903 | None:intergenic | 35.0% |
| ! | TTTCCTTTCAACACACCTTT+TGG | + | chr8_4:19076885-19076904 | None:intergenic | 35.0% |
| !!! | GCCTTTTTTTGGATTGTTCT+AGG | - | chr8_4:19076982-19077001 | Msa1317630:CDS | 35.0% |
| GCCTAGAACAATCCAAAAAA+AGG | + | chr8_4:19076986-19077005 | None:intergenic | 35.0% | |
| !! | TTCTAGGCAGTATTGATACT+TGG | - | chr8_4:19076998-19077017 | Msa1317630:CDS | 35.0% |
| !! | TCTAGGCAGTATTGATACTT+GGG | - | chr8_4:19076999-19077018 | Msa1317630:CDS | 35.0% |
| ! | GATTTATTGGCTACTCTGTT+TGG | - | chr8_4:19077049-19077068 | Msa1317630:CDS | 35.0% |
| TAGTCCTTGATTAACTTTGC+TGG | - | chr8_4:19077080-19077099 | Msa1317630:CDS | 35.0% | |
| CATACCAGCAAAGTTAATCA+AGG | + | chr8_4:19077087-19077106 | None:intergenic | 35.0% | |
| TCAACGAAACCCTAAATCTC+AGG | + | chr8_4:19074729-19074748 | None:intergenic | 40.0% | |
| ATCCTCAAAGTGAAGCTTCT+CGG | + | chr8_4:19074828-19074847 | None:intergenic | 40.0% | |
| AGAATGAGAATCAGAATCGG+AGG | + | chr8_4:19074858-19074877 | None:intergenic | 40.0% | |
| !! | TCCTTCACCGATTCAATAAC+CGG | + | chr8_4:19074896-19074915 | None:intergenic | 40.0% |
| TATTGAATCGGTGAAGGAGA+AGG | - | chr8_4:19074898-19074917 | Msa1317630:three_prime_UTR | 40.0% | |
| ! | GAGAAGGTTTTTCGCCTTTT+TGG | - | chr8_4:19074914-19074933 | Msa1317630:three_prime_UTR | 40.0% |
| ! | AGGTTTTTCGCCTTTTTGGA+AGG | - | chr8_4:19074918-19074937 | Msa1317630:three_prime_UTR | 40.0% |
| !! | GGTTTTTCGCCTTTTTGGAA+GGG | - | chr8_4:19074919-19074938 | Msa1317630:three_prime_UTR | 40.0% |
| TGCCAAAGGACGAATTGTAT+GGG | - | chr8_4:19075278-19075297 | Msa1317630:CDS | 40.0% | |
| TTCCCATACAATTCGTCCTT+TGG | + | chr8_4:19075283-19075302 | None:intergenic | 40.0% | |
| TTCTACACACAAATCGCACT+TGG | + | chr8_4:19075308-19075327 | None:intergenic | 40.0% | |
| !! | TCTTTTAGAGGCATGCATCA+CGG | + | chr8_4:19075660-19075679 | None:intergenic | 40.0% |
| AAGTTATCTGCTGGTACACT+CGG | - | chr8_4:19075774-19075793 | Msa1317630:CDS | 40.0% | |
| CATGCAGCAAATGGTTAGAT+AGG | + | chr8_4:19075986-19076005 | None:intergenic | 40.0% | |
| TGAACAATTGGAATGTGAGG+TGG | + | chr8_4:19076050-19076069 | None:intergenic | 40.0% | |
| AATCTGCAGAAATGGTTCCT+CGG | + | chr8_4:19076078-19076097 | None:intergenic | 40.0% | |
| ! | TTTTCTGCCTTGCGTGATAT+TGG | - | chr8_4:19076131-19076150 | Msa1317630:intron | 40.0% |
| TTCACAGGTTACGTACAATG+AGG | + | chr8_4:19076181-19076200 | None:intergenic | 40.0% | |
| CATAAGTGAATGAATGACGG+GGG | - | chr8_4:19076399-19076418 | Msa1317630:intron | 40.0% | |
| ! | ATAAGTGAATGAATGACGGG+GGG | - | chr8_4:19076400-19076419 | Msa1317630:intron | 40.0% |
| CATGTTATTGACCACTGCTA+AGG | - | chr8_4:19076531-19076550 | Msa1317630:intron | 40.0% | |
| !!! | GTTAGGTAATTTTTGGCCTG+TGG | - | chr8_4:19076573-19076592 | Msa1317630:intron | 40.0% |
| ! | TGTGGATTCTGTCGATTGTT+GGG | - | chr8_4:19076591-19076610 | Msa1317630:intron | 40.0% |
| TCGTACTTGTCATACACGAA+AGG | + | chr8_4:19076762-19076781 | None:intergenic | 40.0% | |
| TTTCGTGTATGACAAGTACG+AGG | - | chr8_4:19076761-19076780 | Msa1317630:intron | 40.0% | |
| GTATGCTGTGTTTGACGAAA+AGG | - | chr8_4:19076833-19076852 | Msa1317630:intron | 40.0% | |
| ATCTTCAGCAAGATCCCAAA+AGG | - | chr8_4:19076867-19076886 | Msa1317630:intron | 40.0% | |
| ! | ATCCCAAAAGGTGTGTTGAA+AGG | - | chr8_4:19076879-19076898 | Msa1317630:intron | 40.0% |
| AGTTTGTAGAATGTGTGCTC+CGG | - | chr8_4:19076915-19076934 | Msa1317630:CDS | 40.0% | |
| !!! | AGCCTCTTTTTTCTTCTAGC+CGG | + | chr8_4:19076937-19076956 | None:intergenic | 40.0% |
| TTCGTGCTGCGAAAAATGTT+TGG | - | chr8_4:19077173-19077192 | Msa1317630:five_prime_UTR | 40.0% | |
| ACCGGTTATTGAATCGGTGA+AGG | - | chr8_4:19074892-19074911 | Msa1317630:three_prime_UTR | 45.0% | |
| GCTCTTAATGACTCTGCCAA+AGG | - | chr8_4:19075264-19075283 | Msa1317630:CDS | 45.0% | |
| CTGCCAAAGGACGAATTGTA+TGG | - | chr8_4:19075277-19075296 | Msa1317630:CDS | 45.0% | |
| AGTTATCTGCTGGTACACTC+GGG | - | chr8_4:19075775-19075794 | Msa1317630:CDS | 45.0% | |
| ! | GTGAACAAAGGCATGAGCAT+TGG | + | chr8_4:19075904-19075923 | None:intergenic | 45.0% |
| TCCAATTGTTCATCTTCCCG+AGG | - | chr8_4:19076058-19076077 | Msa1317630:CDS | 45.0% | |
| TCCTCGGGAAGATGAACAAT+TGG | + | chr8_4:19076062-19076081 | None:intergenic | 45.0% | |
| ATCTGCAGAAATGGTTCCTC+GGG | + | chr8_4:19076077-19076096 | None:intergenic | 45.0% | |
| GCAGAAGCAATCTGCAGAAA+TGG | + | chr8_4:19076086-19076105 | None:intergenic | 45.0% | |
| TCCAGTACCAATATCACGCA+AGG | + | chr8_4:19076141-19076160 | None:intergenic | 45.0% | |
| CAACAATCGACAGAATCCAC+AGG | + | chr8_4:19076592-19076611 | None:intergenic | 45.0% | |
| ! | CTGTGGATTCTGTCGATTGT+TGG | - | chr8_4:19076590-19076609 | Msa1317630:intron | 45.0% |
| CTCCGGCTAGAAGAAAAAAG+AGG | - | chr8_4:19076932-19076951 | Msa1317630:CDS | 45.0% | |
| AGAGGCGAGAATCTCAGTGT+GGG | + | chr8_4:19074641-19074660 | None:intergenic | 50.0% | |
| TAGAGGCGAGAATCTCAGTG+TGG | + | chr8_4:19074642-19074661 | None:intergenic | 50.0% | |
| ! | AGAGAGTGCAGTGTGGTTAG+AGG | + | chr8_4:19074659-19074678 | None:intergenic | 50.0% |
| !!! | GTTTTGGAGAGAGTGCAGTG+TGG | + | chr8_4:19074666-19074685 | None:intergenic | 50.0% |
| !! | ATCGGAGAAAAGCACCGTGA+CGG | - | chr8_4:19074763-19074782 | Msa1317630:three_prime_UTR | 50.0% |
| CACCGAGAAGCTTCACTTTG+AGG | - | chr8_4:19074823-19074842 | Msa1317630:three_prime_UTR | 50.0% | |
| CAGGCTTCTCCCTTCCAAAA+AGG | + | chr8_4:19074931-19074950 | None:intergenic | 50.0% | |
| AAGCCTGTTCATTCCGTCCT+CGG | - | chr8_4:19074944-19074963 | Msa1317630:three_prime_UTR | 50.0% | |
| CAGCTGCTGATGTGTTCTTG+TGG | - | chr8_4:19075742-19075761 | Msa1317630:CDS | 50.0% | |
| TCGGGACAGCAACTGCTATT+TGG | - | chr8_4:19075793-19075812 | Msa1317630:CDS | 50.0% | |
| ! | CGGGACAGCAACTGCTATTT+GGG | - | chr8_4:19075794-19075813 | Msa1317630:CDS | 50.0% |
| CACGCAAGGCAGAAAATCCT+CGG | + | chr8_4:19076127-19076146 | None:intergenic | 50.0% | |
| GCCTTGCGTGATATTGGTAC+TGG | - | chr8_4:19076137-19076156 | Msa1317630:intron | 50.0% | |
| ! | TTCTGTCGATTGTTGGGAGC+TGG | - | chr8_4:19076597-19076616 | Msa1317630:intron | 50.0% |
| GATAGACCCTCTGGCAGAAA+AGG | - | chr8_4:19076788-19076807 | Msa1317630:intron | 50.0% | |
| ! | TGGATGCCTTTTCTGCCAGA+GGG | + | chr8_4:19076797-19076816 | None:intergenic | 50.0% |
| ! | ATGGATGCCTTTTCTGCCAG+AGG | + | chr8_4:19076798-19076817 | None:intergenic | 50.0% |
| CGAGGACAAGATAGACCCTC+TGG | - | chr8_4:19076779-19076798 | Msa1317630:intron | 55.0% | |
| !! | GGAGAAAAGCACCGTGACGG+TGG | - | chr8_4:19074766-19074785 | Msa1317630:three_prime_UTR | 60.0% |
| ACCGTGACGGTGGATCGTGA+CGG | - | chr8_4:19074776-19074795 | Msa1317630:three_prime_UTR | 60.0% | |
| CCTGTTCATTCCGTCCTCGG+CGG | - | chr8_4:19074947-19074966 | Msa1317630:three_prime_UTR | 60.0% | |
| GCCGTCACGATCCACCGTCA+CGG | + | chr8_4:19074780-19074799 | None:intergenic | 65.0% | |
| GTGACGGTGGATCGTGACGG+CGG | - | chr8_4:19074779-19074798 | Msa1317630:three_prime_UTR | 65.0% | |
| CCGCCGAGGACGGAATGAAC+AGG | + | chr8_4:19074950-19074969 | None:intergenic | 65.0% | |
| GTTCATTCCGTCCTCGGCGG+CGG | - | chr8_4:19074950-19074969 | Msa1317630:three_prime_UTR | 65.0% | |
| TCATACGCTTTCCGCCGCCG+AGG | + | chr8_4:19074964-19074983 | None:intergenic | 65.0% | |
| ACGCTTTCCGCCGCCGAGGA+CGG | + | chr8_4:19074960-19074979 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 19074622 | 19077267 | 19074622 | ID=Msa1317630;Name=Msa1317630 |
| chr8_4 | mRNA | 19074622 | 19077267 | 19074622 | ID=Msa1317630-mRNA-1;Parent=Msa1317630;Name=Msa1317630-mRNA-1;_AED=0.06;_eAED=0.06;_QI=130|1|1|1|1|1|5|353|265 |
| chr8_4 | exon | 19074622 | 19075153 | 19074622 | ID=Msa1317630-mRNA-1:exon:7027;Parent=Msa1317630-mRNA-1 |
| chr8_4 | exon | 19075242 | 19075311 | 19075242 | ID=Msa1317630-mRNA-1:exon:7026;Parent=Msa1317630-mRNA-1 |
| chr8_4 | exon | 19075705 | 19075846 | 19075705 | ID=Msa1317630-mRNA-1:exon:7025;Parent=Msa1317630-mRNA-1 |
| chr8_4 | exon | 19075964 | 19076144 | 19075964 | ID=Msa1317630-mRNA-1:exon:7024;Parent=Msa1317630-mRNA-1 |
| chr8_4 | exon | 19076912 | 19077267 | 19076912 | ID=Msa1317630-mRNA-1:exon:7023;Parent=Msa1317630-mRNA-1 |
| chr8_4 | five_prime_UTR | 19077138 | 19077267 | 19077138 | ID=Msa1317630-mRNA-1:five_prime_utr;Parent=Msa1317630-mRNA-1 |
| chr8_4 | CDS | 19076912 | 19077137 | 19076912 | ID=Msa1317630-mRNA-1:cds;Parent=Msa1317630-mRNA-1 |
| chr8_4 | CDS | 19075964 | 19076144 | 19075964 | ID=Msa1317630-mRNA-1:cds;Parent=Msa1317630-mRNA-1 |
| chr8_4 | CDS | 19075705 | 19075846 | 19075705 | ID=Msa1317630-mRNA-1:cds;Parent=Msa1317630-mRNA-1 |
| chr8_4 | CDS | 19075242 | 19075311 | 19075242 | ID=Msa1317630-mRNA-1:cds;Parent=Msa1317630-mRNA-1 |
| chr8_4 | CDS | 19074975 | 19075153 | 19074975 | ID=Msa1317630-mRNA-1:cds;Parent=Msa1317630-mRNA-1 |
| chr8_4 | three_prime_UTR | 19074622 | 19074974 | 19074622 | ID=Msa1317630-mRNA-1:three_prime_utr;Parent=Msa1317630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
