Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003100 | sp|Q9LQZ5|SRS5_ARATH | 45.580 | 362 | 152 | 12 | 1 | 333 | 1 | 346 | 8.65e-80 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0003100 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003100 | Msa0050640 | 0.835795 | 1.362606e-56 | -8.615850e-47 |
| Msa0003100 | Msa0050680 | 0.834384 | 3.092857e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003100 | MtrunA17_Chr1g0155791 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 665 |
| Msa0003100 | MtrunA17_Chr3g0142171 | 52.381 | 336 | 108 | 16 | 1 | 330 | 1 | 290 | 1.70e-86 | 262 |
| Msa0003100 | MtrunA17_Chr5g0404781 | 46.023 | 352 | 142 | 12 | 1 | 333 | 1 | 323 | 1.58e-70 | 222 |
| Msa0003100 | MtrunA17_Chr8g0372461 | 44.034 | 352 | 157 | 11 | 1 | 333 | 1 | 331 | 7.98e-69 | 218 |
| Msa0003100 | MtrunA17_Chr5g0441921 | 45.062 | 162 | 82 | 3 | 119 | 273 | 124 | 285 | 1.51e-37 | 137 |
| Msa0003100 | MtrunA17_Chr3g0082511 | 36.279 | 215 | 112 | 6 | 93 | 286 | 107 | 317 | 8.07e-36 | 132 |
| Msa0003100 | MtrunA17_Chr4g0035591 | 41.611 | 149 | 62 | 2 | 116 | 264 | 17 | 140 | 3.15e-34 | 124 |
| Msa0003100 | MtrunA17_Chr8g0353111 | 39.779 | 181 | 96 | 3 | 119 | 286 | 124 | 304 | 2.73e-31 | 120 |
| Msa0003100 | MtrunA17_Chr0c01g0489181 | 59.459 | 37 | 15 | 0 | 117 | 153 | 65 | 101 | 1.98e-13 | 65.9 |
| Msa0003100 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 116 | 153 | 147 | 184 | 1.11e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003100 | AT1G75520.1 | 45.580 | 362 | 152 | 12 | 1 | 333 | 1 | 346 | 8.79e-81 | 249 |
| Msa0003100 | AT1G19790.2 | 45.299 | 351 | 166 | 11 | 1 | 332 | 1 | 344 | 1.82e-79 | 246 |
| Msa0003100 | AT1G19790.1 | 45.299 | 351 | 166 | 11 | 1 | 332 | 1 | 344 | 1.82e-79 | 246 |
| Msa0003100 | AT3G51060.1 | 45.687 | 313 | 136 | 8 | 44 | 333 | 69 | 370 | 4.63e-73 | 230 |
| Msa0003100 | AT5G66350.1 | 42.391 | 368 | 140 | 12 | 1 | 333 | 1 | 331 | 2.62e-67 | 214 |
| Msa0003100 | AT5G66350.3 | 41.598 | 363 | 140 | 12 | 1 | 328 | 1 | 326 | 3.90e-65 | 209 |
| Msa0003100 | AT5G66350.2 | 42.017 | 357 | 135 | 12 | 1 | 322 | 1 | 320 | 8.84e-64 | 205 |
| Msa0003100 | AT2G21400.4 | 42.791 | 215 | 83 | 6 | 116 | 327 | 6 | 183 | 1.34e-46 | 156 |
| Msa0003100 | AT2G21400.2 | 42.791 | 215 | 83 | 6 | 116 | 327 | 7 | 184 | 1.35e-46 | 156 |
| Msa0003100 | AT4G36260.1 | 41.379 | 232 | 93 | 8 | 45 | 266 | 48 | 246 | 6.79e-46 | 159 |
| Msa0003100 | AT2G21400.3 | 41.981 | 212 | 74 | 6 | 116 | 327 | 7 | 169 | 1.46e-44 | 150 |
| Msa0003100 | AT2G21400.1 | 41.981 | 212 | 74 | 6 | 116 | 327 | 6 | 168 | 1.56e-44 | 150 |
| Msa0003100 | AT2G18120.1 | 40.175 | 229 | 85 | 6 | 67 | 266 | 1 | 206 | 1.10e-43 | 150 |
| Msa0003100 | AT2G18120.2 | 40.625 | 224 | 89 | 5 | 67 | 266 | 1 | 204 | 2.95e-41 | 144 |
| Msa0003100 | AT5G12330.1 | 45.625 | 160 | 75 | 3 | 119 | 266 | 112 | 271 | 8.43e-37 | 135 |
| Msa0003100 | AT5G12330.2 | 45.625 | 160 | 75 | 3 | 119 | 266 | 112 | 271 | 8.43e-37 | 135 |
| Msa0003100 | AT5G12330.4 | 45.625 | 160 | 75 | 3 | 119 | 266 | 199 | 358 | 1.26e-36 | 136 |
| Msa0003100 | AT5G33210.2 | 61.538 | 91 | 31 | 2 | 117 | 207 | 15 | 101 | 1.15e-30 | 112 |
| Msa0003100 | AT5G33210.1 | 61.538 | 91 | 31 | 2 | 117 | 207 | 50 | 136 | 1.53e-30 | 114 |
| Msa0003100 | AT3G54430.1 | 35.185 | 162 | 81 | 4 | 115 | 272 | 37 | 178 | 1.75e-22 | 93.2 |
| Msa0003100 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 119 | 164 | 112 | 157 | 5.10e-21 | 90.5 |
Find 71 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCCCTCTGGAGCTTC+TGG | 0.278538 | 1_1:-5621839 | Msa0003100:CDS |
| TCCGATGAATCAACAAGATT+TGG | 0.294425 | 1_1:-5622133 | Msa0003100:CDS |
| AGCTCCTCTTAATGCTTTCA+TGG | 0.295162 | 1_1:-5620974 | Msa0003100:CDS |
| CACTCATGTCTTTAGGATCT+TGG | 0.298433 | 1_1:+5620928 | None:intergenic |
| TGAATTCACCGGCGGTGTTC+AGG | 0.312818 | 1_1:-5621254 | Msa0003100:CDS |
| TATATACCTGTGGTAGTAAT+AGG | 0.332609 | 1_1:+5621794 | None:intergenic |
| AGGTCTTCAAGTGGTGGTTT+AGG | 0.350386 | 1_1:-5622097 | Msa0003100:CDS |
| CCACCACCACCAGCAGCATT+TGG | 0.366342 | 1_1:+5621105 | None:intergenic |
| GGTGGTGGCGAGGGTTCTTC+CGG | 0.369737 | 1_1:-5621090 | Msa0003100:CDS |
| CGTTCGCGGCGTTTAGCAGC+TGG | 0.397352 | 1_1:+5621947 | None:intergenic |
| CCTCTTAATGCTTTCATGGC+TGG | 0.408461 | 1_1:-5620970 | Msa0003100:CDS |
| GTGGACAATCTTTCTTAGCT+TGG | 0.415642 | 1_1:+5622041 | None:intergenic |
| TGAGTTGTTGCTGCCGTTCG+CGG | 0.429437 | 1_1:+5621933 | None:intergenic |
| GGCGAGGGTTCTTCCGGTGG+TGG | 0.430350 | 1_1:-5621084 | Msa0003100:CDS |
| ACCAAATCTTGTTGATTCAT+CGG | 0.431484 | 1_1:+5622132 | None:intergenic |
| TTGAAATTAGGGTTGGAGTT+GGG | 0.437119 | 1_1:-5621294 | Msa0003100:intron |
| AGTGGTGGTTTAGGTGGTGG+TGG | 0.442865 | 1_1:-5622088 | Msa0003100:CDS |
| GGTTCTTCCGGTGGTGGCAG+CGG | 0.446891 | 1_1:-5621078 | Msa0003100:CDS |
| TTCGCCACCGCTGCCACCAC+CGG | 0.449406 | 1_1:+5621071 | None:intergenic |
| AAACTCATGTGAAAAGTACT+TGG | 0.464467 | 1_1:-5621973 | Msa0003100:CDS |
| TGCTGCTGGTGGTGGTGGCG+AGG | 0.465766 | 1_1:-5621100 | Msa0003100:CDS |
| AGTCCAAATGCTGCTGGTGG+TGG | 0.470798 | 1_1:-5621108 | Msa0003100:CDS |
| TTGTATGATCAAGGACTTGA+AGG | 0.474373 | 1_1:-5621141 | Msa0003100:CDS |
| GAAAATCAAAATGATCCCTC+TGG | 0.474468 | 1_1:-5621848 | Msa0003100:CDS |
| TGTCTTTAGGATCTTGGAGG+TGG | 0.488834 | 1_1:+5620934 | None:intergenic |
| GCTGCTGGTGGTGGTGGCGA+GGG | 0.489987 | 1_1:-5621099 | Msa0003100:CDS |
| TATAGTGAAGAATACTCAAA+TGG | 0.492700 | 1_1:+5621000 | None:intergenic |
| TCAAGTGGTGGTTTAGGTGG+TGG | 0.495997 | 1_1:-5622091 | Msa0003100:CDS |
| CCAAATGCTGCTGGTGGTGG+TGG | 0.498599 | 1_1:-5621105 | Msa0003100:CDS |
| ATGAAAGCATTAAGAGGAGC+TGG | 0.499046 | 1_1:+5620976 | None:intergenic |
| CCTGTGGTAGTAATAGGTAC+TGG | 0.504192 | 1_1:+5621800 | None:intergenic |
| TTCTCTCTAAGCAGTGGAAG+AGG | 0.504749 | 1_1:-5622400 | Msa0003100:CDS |
| ATTGTTAACATTTGTTGTGG+TGG | 0.506186 | 1_1:+5621023 | None:intergenic |
| GTGTTACAAAACAACATGGC+TGG | 0.510933 | 1_1:-5622427 | None:intergenic |
| TACACTAGTCCAAATGCTGC+TGG | 0.515717 | 1_1:-5621114 | Msa0003100:CDS |
| TCTTCCGGTGGTGGCAGCGG+TGG | 0.515802 | 1_1:-5621075 | Msa0003100:CDS |
| TCTTCAAGTGGTGGTTTAGG+TGG | 0.516785 | 1_1:-5622094 | Msa0003100:CDS |
| AGTAATAGGTACTGGAGTAC+AGG | 0.518362 | 1_1:+5621808 | None:intergenic |
| CCAGCCATGAAAGCATTAAG+AGG | 0.523927 | 1_1:+5620970 | None:intergenic |
| TCATGTCTTTAGGATCTTGG+AGG | 0.529757 | 1_1:+5620931 | None:intergenic |
| TTTGAAATTAGGGTTGGAGT+TGG | 0.534737 | 1_1:-5621295 | Msa0003100:intron |
| GGTGGTGGCAGCGGTGGCGA+AGG | 0.539736 | 1_1:-5621069 | Msa0003100:CDS |
| AACGAAGAGATCTACAACAA+AGG | 0.541118 | 1_1:-5622307 | Msa0003100:CDS |
| GGTTTCTTCTCTCTAAGCAG+TGG | 0.547720 | 1_1:-5622406 | Msa0003100:CDS |
| TTTACACACCTGAACACCGC+CGG | 0.552531 | 1_1:+5621246 | None:intergenic |
| GAAGATTGTTGATGTTGTTG+TGG | 0.555117 | 1_1:+5622271 | None:intergenic |
| TCCACCGGAGCTGAATTCAC+CGG | 0.555263 | 1_1:-5621265 | Msa0003100:CDS |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.557726 | 1_1:-5622006 | Msa0003100:CDS |
| CAGCTGCTAAACGCCGCGAA+CGG | 0.557914 | 1_1:-5621946 | Msa0003100:CDS |
| GTCTTTAGGATCTTGGAGGT+GGG | 0.561171 | 1_1:+5620935 | None:intergenic |
| CCAGTACCTATTACTACCAC+AGG | 0.564967 | 1_1:-5621800 | Msa0003100:intron |
| CAAACTGCTGTGAACATAGG+AGG | 0.565014 | 1_1:-5621183 | Msa0003100:CDS |
| GCCGGTGAATTCAGCTCCGG+TGG | 0.569608 | 1_1:+5621264 | None:intergenic |
| TATCAAACTGCTGTGAACAT+AGG | 0.572121 | 1_1:-5621186 | Msa0003100:CDS |
| GGTGGCGAGGGTTCTTCCGG+TGG | 0.572206 | 1_1:-5621087 | Msa0003100:CDS |
| ACCGCCGGTGAATTCAGCTC+CGG | 0.574562 | 1_1:+5621261 | None:intergenic |
| TAGAGAACCAGAAGCTCCAG+AGG | 0.578477 | 1_1:+5621832 | None:intergenic |
| AACTCATGTGAAAAGTACTT+GGG | 0.591492 | 1_1:-5621972 | Msa0003100:CDS |
| AACAGTTTCACTCATCAAGA+AGG | 0.597990 | 1_1:-5621877 | Msa0003100:CDS |
| TGGATTGTTAACATTTGTTG+TGG | 0.600855 | 1_1:+5621020 | None:intergenic |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.603647 | 1_1:-5622007 | Msa0003100:CDS |
| GTGATGAGGTCTTCAAGTGG+TGG | 0.621009 | 1_1:-5622103 | Msa0003100:CDS |
| GATTTGGTTTAACAGTGATG+AGG | 0.626557 | 1_1:-5622117 | Msa0003100:CDS |
| CAAGTTCTACATCTAAGATG+TGG | 0.632750 | 1_1:+5622022 | None:intergenic |
| GAAGAAAATAACAACAACAG+TGG | 0.647698 | 1_1:-5622355 | Msa0003100:CDS |
| GGAATGAACTGTCAAGATTG+TGG | 0.658447 | 1_1:-5622067 | Msa0003100:CDS |
| ACCGGAGCTGAATTCACCGG+CGG | 0.668533 | 1_1:-5621262 | Msa0003100:CDS |
| AGAGAACCAGAAGCTCCAGA+GGG | 0.671479 | 1_1:+5621833 | None:intergenic |
| GTGTGTAAAAGTGAGTGCAA+TGG | 0.678715 | 1_1:-5621232 | Msa0003100:CDS |
| ACTAGTCCAAATGCTGCTGG+TGG | 0.700201 | 1_1:-5621111 | Msa0003100:CDS |
| ACAGTGATGAGGTCTTCAAG+TGG | 0.705760 | 1_1:-5622106 | Msa0003100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTGATTTGAAATT+AGG | - | chr1_1:5622045-5622064 | Msa0003100:CDS | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | - | chr1_1:5622046-5622065 | Msa0003100:CDS | 10.0% |
| !!! | TTTTTATTTGATTTGAAATT+AGG | - | chr1_1:5622045-5622064 | Msa0003100:CDS | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | - | chr1_1:5622046-5622065 | Msa0003100:CDS | 10.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | - | chr1_1:5621137-5621156 | Msa0003100:CDS | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | + | chr1_1:5621833-5621852 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | - | chr1_1:5622013-5622032 | Msa0003100:CDS | 15.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | - | chr1_1:5621137-5621156 | Msa0003100:CDS | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | + | chr1_1:5621833-5621852 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | - | chr1_1:5622013-5622032 | Msa0003100:CDS | 15.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | - | chr1_1:5621679-5621698 | Msa0003100:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | - | chr1_1:5621680-5621699 | Msa0003100:intron | 20.0% |
| !!! | TAGTTTTTTGATATATAGCT+AGG | - | chr1_1:5621719-5621738 | Msa0003100:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | - | chr1_1:5621804-5621823 | Msa0003100:CDS | 20.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | - | chr1_1:5621679-5621698 | Msa0003100:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | - | chr1_1:5621680-5621699 | Msa0003100:intron | 20.0% |
| !!! | TAGTTTTTTGATATATAGCT+AGG | - | chr1_1:5621719-5621738 | Msa0003100:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | - | chr1_1:5621804-5621823 | Msa0003100:CDS | 20.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | - | chr1_1:5621143-5621162 | Msa0003100:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | + | chr1_1:5621570-5621589 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | - | chr1_1:5621927-5621946 | Msa0003100:CDS | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | - | chr1_1:5621934-5621953 | Msa0003100:CDS | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | - | chr1_1:5621986-5622005 | Msa0003100:CDS | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | - | chr1_1:5622050-5622069 | Msa0003100:CDS | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | + | chr1_1:5622354-5622373 | None:intergenic | 25.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | - | chr1_1:5621143-5621162 | Msa0003100:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | + | chr1_1:5621570-5621589 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | - | chr1_1:5621927-5621946 | Msa0003100:CDS | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | - | chr1_1:5621934-5621953 | Msa0003100:CDS | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | - | chr1_1:5621986-5622005 | Msa0003100:CDS | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | - | chr1_1:5622050-5622069 | Msa0003100:CDS | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | + | chr1_1:5622354-5622373 | None:intergenic | 25.0% |
| GAAGAAAATAACAACAACAG+TGG | - | chr1_1:5620996-5621015 | Msa0003100:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | - | chr1_1:5621057-5621076 | Msa0003100:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | + | chr1_1:5621222-5621241 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | - | chr1_1:5621378-5621397 | Msa0003100:intron | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | - | chr1_1:5621379-5621398 | Msa0003100:intron | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | + | chr1_1:5621560-5621579 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | + | chr1_1:5621860-5621879 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | + | chr1_1:5621865-5621884 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | - | chr1_1:5621910-5621929 | Msa0003100:CDS | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | - | chr1_1:5622201-5622220 | Msa0003100:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | + | chr1_1:5622331-5622350 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | + | chr1_1:5622334-5622353 | None:intergenic | 30.0% |
| GAAGAAAATAACAACAACAG+TGG | - | chr1_1:5620996-5621015 | Msa0003100:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | - | chr1_1:5621057-5621076 | Msa0003100:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | + | chr1_1:5621222-5621241 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | - | chr1_1:5621378-5621397 | Msa0003100:intron | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | - | chr1_1:5621379-5621398 | Msa0003100:intron | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | + | chr1_1:5621560-5621579 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | + | chr1_1:5621860-5621879 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | + | chr1_1:5621865-5621884 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | - | chr1_1:5621910-5621929 | Msa0003100:CDS | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | - | chr1_1:5622201-5622220 | Msa0003100:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | + | chr1_1:5622331-5622350 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | + | chr1_1:5622334-5622353 | None:intergenic | 30.0% |
| AACGAAGAGATCTACAACAA+AGG | - | chr1_1:5621044-5621063 | Msa0003100:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | + | chr1_1:5621083-5621102 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | - | chr1_1:5621218-5621237 | Msa0003100:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | - | chr1_1:5621234-5621253 | Msa0003100:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | + | chr1_1:5621332-5621351 | None:intergenic | 35.0% |
| AACAGTTTCACTCATCAAGA+AGG | - | chr1_1:5621474-5621493 | Msa0003100:intron | 35.0% | |
| GAAAATCAAAATGATCCCTC+TGG | - | chr1_1:5621503-5621522 | Msa0003100:intron | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | - | chr1_1:5622056-5622075 | Msa0003100:CDS | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | - | chr1_1:5622057-5622076 | Msa0003100:CDS | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | - | chr1_1:5622165-5622184 | Msa0003100:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | - | chr1_1:5622183-5622202 | Msa0003100:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | - | chr1_1:5622210-5622229 | Msa0003100:CDS | 35.0% | |
| AACGAAGAGATCTACAACAA+AGG | - | chr1_1:5621044-5621063 | Msa0003100:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | + | chr1_1:5621083-5621102 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | - | chr1_1:5621218-5621237 | Msa0003100:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | - | chr1_1:5621234-5621253 | Msa0003100:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | + | chr1_1:5621332-5621351 | None:intergenic | 35.0% |
| AACAGTTTCACTCATCAAGA+AGG | - | chr1_1:5621474-5621493 | Msa0003100:intron | 35.0% | |
| GAAAATCAAAATGATCCCTC+TGG | - | chr1_1:5621503-5621522 | Msa0003100:intron | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | - | chr1_1:5622056-5622075 | Msa0003100:CDS | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | - | chr1_1:5622057-5622076 | Msa0003100:CDS | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | - | chr1_1:5622165-5622184 | Msa0003100:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | - | chr1_1:5622183-5622202 | Msa0003100:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | - | chr1_1:5622210-5622229 | Msa0003100:CDS | 35.0% | |
| GGAATGAACTGTCAAGATTG+TGG | - | chr1_1:5621284-5621303 | Msa0003100:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | + | chr1_1:5621313-5621332 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | + | chr1_1:5621546-5621565 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | - | chr1_1:5622119-5622138 | Msa0003100:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | - | chr1_1:5622182-5622201 | Msa0003100:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | + | chr1_1:5622378-5622397 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | - | chr1_1:5622377-5622396 | Msa0003100:CDS | 40.0% | |
| GGAATGAACTGTCAAGATTG+TGG | - | chr1_1:5621284-5621303 | Msa0003100:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | + | chr1_1:5621313-5621332 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | + | chr1_1:5621546-5621565 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | - | chr1_1:5622119-5622138 | Msa0003100:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | - | chr1_1:5622182-5622201 | Msa0003100:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | + | chr1_1:5622378-5622397 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | - | chr1_1:5622377-5622396 | Msa0003100:CDS | 40.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | - | chr1_1:5620945-5620964 | Msa0003100:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | - | chr1_1:5620951-5620970 | Msa0003100:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | - | chr1_1:5621245-5621264 | Msa0003100:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | - | chr1_1:5621254-5621273 | Msa0003100:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | - | chr1_1:5621257-5621276 | Msa0003100:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr1_1:5621344-5621363 | Msa0003100:intron | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr1_1:5621345-5621364 | Msa0003100:intron | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | + | chr1_1:5621554-5621573 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | - | chr1_1:5621551-5621570 | Msa0003100:intron | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | - | chr1_1:5621768-5621787 | Msa0003100:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | - | chr1_1:5622071-5622090 | Msa0003100:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | - | chr1_1:5622168-5622187 | Msa0003100:CDS | 45.0% | |
| TACACTAGTCCAAATGCTGC+TGG | - | chr1_1:5622237-5622256 | Msa0003100:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | + | chr1_1:5622384-5622403 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | - | chr1_1:5622381-5622400 | Msa0003100:CDS | 45.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | - | chr1_1:5620945-5620964 | Msa0003100:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | - | chr1_1:5620951-5620970 | Msa0003100:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | - | chr1_1:5621245-5621264 | Msa0003100:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | - | chr1_1:5621254-5621273 | Msa0003100:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | - | chr1_1:5621257-5621276 | Msa0003100:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | - | chr1_1:5621344-5621363 | Msa0003100:intron | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | - | chr1_1:5621345-5621364 | Msa0003100:intron | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | + | chr1_1:5621554-5621573 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | - | chr1_1:5621551-5621570 | Msa0003100:intron | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | - | chr1_1:5621768-5621787 | Msa0003100:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | - | chr1_1:5622071-5622090 | Msa0003100:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | - | chr1_1:5622168-5622187 | Msa0003100:CDS | 45.0% | |
| TACACTAGTCCAAATGCTGC+TGG | - | chr1_1:5622237-5622256 | Msa0003100:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | + | chr1_1:5622384-5622403 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | - | chr1_1:5622381-5622400 | Msa0003100:CDS | 45.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | - | chr1_1:5621248-5621267 | Msa0003100:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | - | chr1_1:5621260-5621279 | Msa0003100:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | - | chr1_1:5621512-5621531 | Msa0003100:intron | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | + | chr1_1:5621521-5621540 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | + | chr1_1:5621522-5621541 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | + | chr1_1:5622108-5622127 | None:intergenic | 50.0% | |
| ACTAGTCCAAATGCTGCTGG+TGG | - | chr1_1:5622240-5622259 | Msa0003100:CDS | 50.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | - | chr1_1:5621248-5621267 | Msa0003100:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | - | chr1_1:5621260-5621279 | Msa0003100:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | - | chr1_1:5621512-5621531 | Msa0003100:intron | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | + | chr1_1:5621521-5621540 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | + | chr1_1:5621522-5621541 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | + | chr1_1:5622108-5622127 | None:intergenic | 50.0% | |
| ACTAGTCCAAATGCTGCTGG+TGG | - | chr1_1:5622240-5622259 | Msa0003100:CDS | 50.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | - | chr1_1:5621263-5621282 | Msa0003100:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | + | chr1_1:5621421-5621440 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | - | chr1_1:5622086-5622105 | Msa0003100:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | - | chr1_1:5622097-5622116 | Msa0003100:CDS | 55.0% | |
| AGTCCAAATGCTGCTGGTGG+TGG | - | chr1_1:5622243-5622262 | Msa0003100:CDS | 55.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | - | chr1_1:5621263-5621282 | Msa0003100:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | + | chr1_1:5621421-5621440 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | - | chr1_1:5622086-5622105 | Msa0003100:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | - | chr1_1:5622097-5622116 | Msa0003100:CDS | 55.0% | |
| AGTCCAAATGCTGCTGGTGG+TGG | - | chr1_1:5622243-5622262 | Msa0003100:CDS | 55.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | - | chr1_1:5621405-5621424 | Msa0003100:intron | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | - | chr1_1:5622089-5622108 | Msa0003100:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | + | chr1_1:5622093-5622112 | None:intergenic | 60.0% | |
| CCACCACCACCAGCAGCATT+TGG | + | chr1_1:5622249-5622268 | None:intergenic | 60.0% | |
| !! | CCAAATGCTGCTGGTGGTGG+TGG | - | chr1_1:5622246-5622265 | Msa0003100:CDS | 60.0% |
| CAGCTGCTAAACGCCGCGAA+CGG | - | chr1_1:5621405-5621424 | Msa0003100:intron | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | - | chr1_1:5622089-5622108 | Msa0003100:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | + | chr1_1:5622093-5622112 | None:intergenic | 60.0% | |
| CCACCACCACCAGCAGCATT+TGG | + | chr1_1:5622249-5622268 | None:intergenic | 60.0% | |
| !! | CCAAATGCTGCTGGTGGTGG+TGG | - | chr1_1:5622246-5622265 | Msa0003100:CDS | 60.0% |
| CGTTCGCGGCGTTTAGCAGC+TGG | + | chr1_1:5621407-5621426 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | + | chr1_1:5622090-5622109 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | - | chr1_1:5622261-5622280 | Msa0003100:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | - | chr1_1:5622273-5622292 | Msa0003100:CDS | 65.0% |
| CGTTCGCGGCGTTTAGCAGC+TGG | + | chr1_1:5621407-5621426 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | + | chr1_1:5622090-5622109 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | - | chr1_1:5622261-5622280 | Msa0003100:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | - | chr1_1:5622273-5622292 | Msa0003100:CDS | 65.0% |
| !! | TGCTGCTGGTGGTGGTGGCG+AGG | - | chr1_1:5622251-5622270 | Msa0003100:CDS | 70.0% |
| !! | GCTGCTGGTGGTGGTGGCGA+GGG | - | chr1_1:5622252-5622271 | Msa0003100:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | - | chr1_1:5622264-5622283 | Msa0003100:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | - | chr1_1:5622267-5622286 | Msa0003100:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | - | chr1_1:5622276-5622295 | Msa0003100:CDS | 70.0% |
| TTCGCCACCGCTGCCACCAC+CGG | + | chr1_1:5622283-5622302 | None:intergenic | 70.0% | |
| !! | TGCTGCTGGTGGTGGTGGCG+AGG | - | chr1_1:5622251-5622270 | Msa0003100:CDS | 70.0% |
| !! | GCTGCTGGTGGTGGTGGCGA+GGG | - | chr1_1:5622252-5622271 | Msa0003100:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | - | chr1_1:5622264-5622283 | Msa0003100:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | - | chr1_1:5622267-5622286 | Msa0003100:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | - | chr1_1:5622276-5622295 | Msa0003100:CDS | 70.0% |
| TTCGCCACCGCTGCCACCAC+CGG | + | chr1_1:5622283-5622302 | None:intergenic | 70.0% | |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | - | chr1_1:5622282-5622301 | Msa0003100:CDS | 75.0% |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | - | chr1_1:5622282-5622301 | Msa0003100:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 5620939 | 5622434 | 5620939 | ID=Msa0003100;Name=Msa0003100 |
| chr1_1 | mRNA | 5620939 | 5622434 | 5620939 | ID=Msa0003100-mRNA-1;Parent=Msa0003100;Name=Msa0003100-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0|1|1|1|2|0|333 |
| chr1_1 | exon | 5621801 | 5622434 | 5621801 | ID=Msa0003100-mRNA-1:exon:1666;Parent=Msa0003100-mRNA-1 |
| chr1_1 | exon | 5620939 | 5621306 | 5620939 | ID=Msa0003100-mRNA-1:exon:1665;Parent=Msa0003100-mRNA-1 |
| chr1_1 | CDS | 5621801 | 5622434 | 5621801 | ID=Msa0003100-mRNA-1:cds;Parent=Msa0003100-mRNA-1 |
| chr1_1 | CDS | 5620939 | 5621306 | 5620939 | ID=Msa0003100-mRNA-1:cds;Parent=Msa0003100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
