Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050640 | XP_003589349.4 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050640 | sp|Q9LQZ5|SRS5_ARATH | 45.580 | 362 | 152 | 12 | 1 | 333 | 1 | 346 | 8.19e-80 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050640 | A0A396JLJ5 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0050640 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003100 | Msa0050640 | 0.835795 | 1.362606e-56 | -8.615850e-47 |
| Msa0050640 | Msa0050680 | 0.972416 | 9.904672e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050640 | MtrunA17_Chr1g0155791 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 667 |
| Msa0050640 | MtrunA17_Chr3g0142171 | 52.381 | 336 | 108 | 16 | 1 | 330 | 1 | 290 | 1.18e-86 | 262 |
| Msa0050640 | MtrunA17_Chr5g0404781 | 46.307 | 352 | 141 | 12 | 1 | 333 | 1 | 323 | 4.71e-71 | 223 |
| Msa0050640 | MtrunA17_Chr8g0372461 | 44.034 | 352 | 157 | 11 | 1 | 333 | 1 | 331 | 7.09e-69 | 218 |
| Msa0050640 | MtrunA17_Chr5g0441921 | 45.062 | 162 | 82 | 3 | 119 | 273 | 124 | 285 | 1.40e-37 | 137 |
| Msa0050640 | MtrunA17_Chr3g0082511 | 35.814 | 215 | 113 | 6 | 93 | 286 | 107 | 317 | 5.64e-35 | 130 |
| Msa0050640 | MtrunA17_Chr4g0035591 | 41.611 | 149 | 62 | 2 | 116 | 264 | 17 | 140 | 2.74e-34 | 124 |
| Msa0050640 | MtrunA17_Chr8g0353111 | 39.779 | 181 | 96 | 3 | 119 | 286 | 124 | 304 | 1.61e-31 | 120 |
| Msa0050640 | MtrunA17_Chr0c01g0489181 | 59.459 | 37 | 15 | 0 | 117 | 153 | 65 | 101 | 1.98e-13 | 65.9 |
| Msa0050640 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 116 | 153 | 147 | 184 | 1.11e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050640 | AT1G75520.1 | 45.580 | 362 | 152 | 12 | 1 | 333 | 1 | 346 | 8.33e-81 | 249 |
| Msa0050640 | AT1G19790.2 | 45.299 | 351 | 166 | 11 | 1 | 332 | 1 | 344 | 1.12e-79 | 246 |
| Msa0050640 | AT1G19790.1 | 45.299 | 351 | 166 | 11 | 1 | 332 | 1 | 344 | 1.12e-79 | 246 |
| Msa0050640 | AT3G51060.1 | 45.687 | 313 | 136 | 8 | 44 | 333 | 69 | 370 | 2.08e-73 | 231 |
| Msa0050640 | AT5G66350.1 | 42.391 | 368 | 140 | 12 | 1 | 333 | 1 | 331 | 2.98e-67 | 214 |
| Msa0050640 | AT5G66350.3 | 41.598 | 363 | 140 | 12 | 1 | 328 | 1 | 326 | 3.42e-65 | 209 |
| Msa0050640 | AT5G66350.2 | 42.017 | 357 | 135 | 12 | 1 | 322 | 1 | 320 | 7.20e-64 | 206 |
| Msa0050640 | AT2G21400.4 | 42.791 | 215 | 83 | 6 | 116 | 327 | 6 | 183 | 1.27e-46 | 156 |
| Msa0050640 | AT2G21400.2 | 42.791 | 215 | 83 | 6 | 116 | 327 | 7 | 184 | 1.28e-46 | 156 |
| Msa0050640 | AT4G36260.1 | 41.379 | 232 | 93 | 8 | 45 | 266 | 48 | 246 | 5.73e-46 | 159 |
| Msa0050640 | AT2G21400.3 | 41.981 | 212 | 74 | 6 | 116 | 327 | 7 | 169 | 1.30e-44 | 151 |
| Msa0050640 | AT2G21400.1 | 41.981 | 212 | 74 | 6 | 116 | 327 | 6 | 168 | 1.48e-44 | 150 |
| Msa0050640 | AT2G18120.1 | 40.175 | 229 | 85 | 6 | 67 | 266 | 1 | 206 | 8.89e-44 | 150 |
| Msa0050640 | AT2G18120.2 | 40.625 | 224 | 89 | 5 | 67 | 266 | 1 | 204 | 2.57e-41 | 144 |
| Msa0050640 | AT5G12330.1 | 45.625 | 160 | 75 | 3 | 119 | 266 | 112 | 271 | 8.61e-37 | 135 |
| Msa0050640 | AT5G12330.2 | 45.625 | 160 | 75 | 3 | 119 | 266 | 112 | 271 | 8.61e-37 | 135 |
| Msa0050640 | AT5G12330.4 | 45.625 | 160 | 75 | 3 | 119 | 266 | 199 | 358 | 1.13e-36 | 136 |
| Msa0050640 | AT5G33210.2 | 61.538 | 91 | 31 | 2 | 117 | 207 | 15 | 101 | 1.12e-30 | 112 |
| Msa0050640 | AT5G33210.1 | 61.538 | 91 | 31 | 2 | 117 | 207 | 50 | 136 | 1.56e-30 | 114 |
| Msa0050640 | AT3G54430.1 | 35.185 | 162 | 81 | 4 | 115 | 272 | 37 | 178 | 1.65e-22 | 93.2 |
| Msa0050640 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 119 | 164 | 112 | 157 | 5.00e-21 | 90.5 |
Find 69 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCCCTCTGGAGCTTC+TGG | 0.278538 | 1_2:+4565224 | Msa0050640:CDS |
| TCCGATGAATCAACAAGATT+TGG | 0.294425 | 1_2:+4564930 | Msa0050640:CDS |
| AGCTCCTCTTAATGCTTTCA+TGG | 0.295162 | 1_2:+4566085 | Msa0050640:CDS |
| CACTCATGTCTTTAGGATCT+TGG | 0.300540 | 1_2:-4566131 | None:intergenic |
| TGAATTCACCGGCGGTGTTC+AGG | 0.312818 | 1_2:+4565805 | Msa0050640:CDS |
| TATATACCTGTGGTAGTAAT+AGG | 0.332609 | 1_2:-4565269 | None:intergenic |
| AGGTCTTCAAGTGGTGGTTT+AGG | 0.350386 | 1_2:+4564966 | Msa0050640:CDS |
| GGTGGTGGCGAGGGTTCTTC+CGG | 0.367254 | 1_2:+4565969 | Msa0050640:CDS |
| CCACCACCAGCAGCAGCATT+TGG | 0.392576 | 1_2:-4565954 | None:intergenic |
| CGTTCGCGGCGTTTAGCAGC+TGG | 0.397352 | 1_2:-4565116 | None:intergenic |
| CCTCTTAATGCTTTCATGGC+TGG | 0.408461 | 1_2:+4566089 | Msa0050640:CDS |
| GTGGACAATCTTTCTTAGCT+TGG | 0.415642 | 1_2:-4565022 | None:intergenic |
| TGAGTTGTTGCTGCCGTTCG+CGG | 0.429437 | 1_2:-4565130 | None:intergenic |
| GGCGAGGGTTCTTCCGGTGG+TGG | 0.430350 | 1_2:+4565975 | Msa0050640:CDS |
| ACCAAATCTTGTTGATTCAT+CGG | 0.431484 | 1_2:-4564931 | None:intergenic |
| TTGAAATTAGGGTTGGAGTT+GGG | 0.437119 | 1_2:+4565765 | Msa0050640:intron |
| AGTGGTGGTTTAGGTGGTGG+TGG | 0.442865 | 1_2:+4564975 | Msa0050640:CDS |
| GGTTCTTCCGGTGGTGGCAG+CGG | 0.446891 | 1_2:+4565981 | Msa0050640:CDS |
| TTCGCCACCGCTGCCACCAC+CGG | 0.449406 | 1_2:-4565988 | None:intergenic |
| CCAAATGCTGCTGCTGGTGG+TGG | 0.457278 | 1_2:+4565954 | Msa0050640:CDS |
| AAACTCATGTGAAAAGTACT+TGG | 0.464467 | 1_2:+4565090 | Msa0050640:CDS |
| TGCTGCTGCTGGTGGTGGCG+AGG | 0.465038 | 1_2:+4565959 | Msa0050640:CDS |
| TTGTATGATCAAGGACTTGA+AGG | 0.474373 | 1_2:+4565918 | Msa0050640:CDS |
| GAAAATCAAAATGATCCCTC+TGG | 0.474468 | 1_2:+4565215 | Msa0050640:CDS |
| TGTCTTTAGGATCTTGGAGG+TGG | 0.488834 | 1_2:-4566125 | None:intergenic |
| GCTGCTGCTGGTGGTGGCGA+GGG | 0.489260 | 1_2:+4565960 | Msa0050640:CDS |
| TCATGTCTTTAGGATCTTGG+AGG | 0.489282 | 1_2:-4566128 | None:intergenic |
| TATAGTGAAGAATACTCAAA+TGG | 0.492700 | 1_2:-4566059 | None:intergenic |
| TCAAGTGGTGGTTTAGGTGG+TGG | 0.495997 | 1_2:+4564972 | Msa0050640:CDS |
| ATGAAAGCATTAAGAGGAGC+TGG | 0.499046 | 1_2:-4566083 | None:intergenic |
| CCTGTGGTAGTAATAGGTAC+TGG | 0.504192 | 1_2:-4565263 | None:intergenic |
| TTCTCTCTAAGCAGTGGAAG+AGG | 0.504749 | 1_2:+4564663 | Msa0050640:CDS |
| ATTGTTAACATTTGTTGTGG+TGG | 0.506186 | 1_2:-4566036 | None:intergenic |
| GTGTTACAAAACAACATGGC+TGG | 0.510933 | 1_2:+4564636 | None:intergenic |
| TCTTCCGGTGGTGGCAGCGG+TGG | 0.515802 | 1_2:+4565984 | Msa0050640:CDS |
| TCTTCAAGTGGTGGTTTAGG+TGG | 0.516785 | 1_2:+4564969 | Msa0050640:CDS |
| AGTAATAGGTACTGGAGTAC+AGG | 0.518362 | 1_2:-4565255 | None:intergenic |
| CCAGCCATGAAAGCATTAAG+AGG | 0.523927 | 1_2:-4566089 | None:intergenic |
| TTTGAAATTAGGGTTGGAGT+TGG | 0.534737 | 1_2:+4565764 | Msa0050640:intron |
| GGTGGTGGCAGCGGTGGCGA+AGG | 0.539736 | 1_2:+4565990 | Msa0050640:CDS |
| AACGAAGAGATCTACAACAA+AGG | 0.541118 | 1_2:+4564756 | Msa0050640:CDS |
| GGTTTCTTCTCTCTAAGCAG+TGG | 0.547720 | 1_2:+4564657 | Msa0050640:CDS |
| TTTACACACCTGAACACCGC+CGG | 0.552531 | 1_2:-4565813 | None:intergenic |
| GAAGATTGTTGATGTTGTTG+TGG | 0.555117 | 1_2:-4564792 | None:intergenic |
| TCCACCGGAGCTGAATTCAC+CGG | 0.555263 | 1_2:+4565794 | Msa0050640:CDS |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.557726 | 1_2:+4565057 | Msa0050640:CDS |
| CAGCTGCTAAACGCCGCGAA+CGG | 0.557914 | 1_2:+4565117 | Msa0050640:CDS |
| GTCTTTAGGATCTTGGAGGT+GGG | 0.561171 | 1_2:-4566124 | None:intergenic |
| CCAGTACCTATTACTACCAC+AGG | 0.564967 | 1_2:+4565263 | Msa0050640:CDS |
| CAAACTGCTGTGAACATAGG+AGG | 0.565014 | 1_2:+4565876 | Msa0050640:CDS |
| ACTAGTCCAAATGCTGCTGC+TGG | 0.565581 | 1_2:+4565948 | Msa0050640:CDS |
| GCCGGTGAATTCAGCTCCGG+TGG | 0.569608 | 1_2:-4565795 | None:intergenic |
| TATCAAACTGCTGTGAACAT+AGG | 0.572121 | 1_2:+4565873 | Msa0050640:CDS |
| GGTGGCGAGGGTTCTTCCGG+TGG | 0.572206 | 1_2:+4565972 | Msa0050640:CDS |
| ACCGCCGGTGAATTCAGCTC+CGG | 0.574562 | 1_2:-4565798 | None:intergenic |
| TAGAGAACCAGAAGCTCCAG+AGG | 0.578477 | 1_2:-4565231 | None:intergenic |
| AGTCCAAATGCTGCTGCTGG+TGG | 0.584415 | 1_2:+4565951 | Msa0050640:CDS |
| AACTCATGTGAAAAGTACTT+GGG | 0.591492 | 1_2:+4565091 | Msa0050640:CDS |
| TGGATTGTTAACATTTGTTG+TGG | 0.600855 | 1_2:-4566039 | None:intergenic |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.603647 | 1_2:+4565056 | Msa0050640:CDS |
| GTGATGAGGTCTTCAAGTGG+TGG | 0.621009 | 1_2:+4564960 | Msa0050640:CDS |
| GATTTGGTTTAACAGTGATG+AGG | 0.626557 | 1_2:+4564946 | Msa0050640:CDS |
| CAAGTTCTACATCTAAGATG+TGG | 0.632750 | 1_2:-4565041 | None:intergenic |
| GAAGAAAATAACAACAACAG+TGG | 0.647698 | 1_2:+4564708 | Msa0050640:CDS |
| GGAATGAACTGTCAAGATTG+TGG | 0.658447 | 1_2:+4564996 | Msa0050640:CDS |
| ACCGGAGCTGAATTCACCGG+CGG | 0.668533 | 1_2:+4565797 | Msa0050640:CDS |
| AGAGAACCAGAAGCTCCAGA+GGG | 0.671479 | 1_2:-4565230 | None:intergenic |
| GTGTGTAAAAGTGAGTGCAA+TGG | 0.678715 | 1_2:+4565827 | Msa0050640:CDS |
| ACAGTGATGAGGTCTTCAAG+TGG | 0.705760 | 1_2:+4564957 | Msa0050640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTGATTTGAAATT+AGG | + | chr1_2:4565753-4565772 | Msa0050640:intron | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | + | chr1_2:4565754-4565773 | Msa0050640:intron | 10.0% |
| !!! | TTTTTATTTGATTTGAAATT+AGG | + | chr1_2:4565753-4565772 | Msa0050640:intron | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | + | chr1_2:4565754-4565773 | Msa0050640:intron | 10.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | + | chr1_2:4564849-4564868 | Msa0050640:CDS | 15.0% |
| !!! | TAATTTTTTGATATATAGCT+AGG | + | chr1_2:4565425-4565444 | Msa0050640:intron | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | - | chr1_2:4565539-4565558 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | + | chr1_2:4565719-4565738 | Msa0050640:intron | 15.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | + | chr1_2:4564849-4564868 | Msa0050640:CDS | 15.0% |
| !!! | TAATTTTTTGATATATAGCT+AGG | + | chr1_2:4565425-4565444 | Msa0050640:intron | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | - | chr1_2:4565539-4565558 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | + | chr1_2:4565719-4565738 | Msa0050640:intron | 15.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | + | chr1_2:4565385-4565404 | Msa0050640:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | + | chr1_2:4565386-4565405 | Msa0050640:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | + | chr1_2:4565510-4565529 | Msa0050640:intron | 20.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | + | chr1_2:4565385-4565404 | Msa0050640:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | + | chr1_2:4565386-4565405 | Msa0050640:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | + | chr1_2:4565510-4565529 | Msa0050640:intron | 20.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | + | chr1_2:4564855-4564874 | Msa0050640:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | - | chr1_2:4565282-4565301 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | + | chr1_2:4565633-4565652 | Msa0050640:intron | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | + | chr1_2:4565640-4565659 | Msa0050640:intron | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | + | chr1_2:4565692-4565711 | Msa0050640:intron | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | + | chr1_2:4565758-4565777 | Msa0050640:intron | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | - | chr1_2:4566062-4566081 | None:intergenic | 25.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | + | chr1_2:4564855-4564874 | Msa0050640:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | - | chr1_2:4565282-4565301 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | + | chr1_2:4565633-4565652 | Msa0050640:intron | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | + | chr1_2:4565640-4565659 | Msa0050640:intron | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | + | chr1_2:4565692-4565711 | Msa0050640:intron | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | + | chr1_2:4565758-4565777 | Msa0050640:intron | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | - | chr1_2:4566062-4566081 | None:intergenic | 25.0% |
| GAAGAAAATAACAACAACAG+TGG | + | chr1_2:4564708-4564727 | Msa0050640:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | + | chr1_2:4564769-4564788 | Msa0050640:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | - | chr1_2:4564934-4564953 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | + | chr1_2:4565090-4565109 | Msa0050640:CDS | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | + | chr1_2:4565091-4565110 | Msa0050640:CDS | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | - | chr1_2:4565272-4565291 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | - | chr1_2:4565566-4565585 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | - | chr1_2:4565571-4565590 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | + | chr1_2:4565616-4565635 | Msa0050640:intron | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | + | chr1_2:4565909-4565928 | Msa0050640:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | - | chr1_2:4566039-4566058 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | - | chr1_2:4566042-4566061 | None:intergenic | 30.0% |
| GAAGAAAATAACAACAACAG+TGG | + | chr1_2:4564708-4564727 | Msa0050640:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | + | chr1_2:4564769-4564788 | Msa0050640:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | - | chr1_2:4564934-4564953 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | + | chr1_2:4565090-4565109 | Msa0050640:CDS | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | + | chr1_2:4565091-4565110 | Msa0050640:CDS | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | - | chr1_2:4565272-4565291 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | - | chr1_2:4565566-4565585 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | - | chr1_2:4565571-4565590 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | + | chr1_2:4565616-4565635 | Msa0050640:intron | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | + | chr1_2:4565909-4565928 | Msa0050640:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | - | chr1_2:4566039-4566058 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | - | chr1_2:4566042-4566061 | None:intergenic | 30.0% |
| AACGAAGAGATCTACAACAA+AGG | + | chr1_2:4564756-4564775 | Msa0050640:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | - | chr1_2:4564795-4564814 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | + | chr1_2:4564930-4564949 | Msa0050640:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | + | chr1_2:4564946-4564965 | Msa0050640:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | - | chr1_2:4565044-4565063 | None:intergenic | 35.0% |
| GAAAATCAAAATGATCCCTC+TGG | + | chr1_2:4565215-4565234 | Msa0050640:CDS | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | + | chr1_2:4565764-4565783 | Msa0050640:intron | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | + | chr1_2:4565765-4565784 | Msa0050640:intron | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | + | chr1_2:4565873-4565892 | Msa0050640:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | + | chr1_2:4565891-4565910 | Msa0050640:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | + | chr1_2:4565918-4565937 | Msa0050640:CDS | 35.0% | |
| AACGAAGAGATCTACAACAA+AGG | + | chr1_2:4564756-4564775 | Msa0050640:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | - | chr1_2:4564795-4564814 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | + | chr1_2:4564930-4564949 | Msa0050640:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | + | chr1_2:4564946-4564965 | Msa0050640:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | - | chr1_2:4565044-4565063 | None:intergenic | 35.0% |
| GAAAATCAAAATGATCCCTC+TGG | + | chr1_2:4565215-4565234 | Msa0050640:CDS | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | + | chr1_2:4565764-4565783 | Msa0050640:intron | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | + | chr1_2:4565765-4565784 | Msa0050640:intron | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | + | chr1_2:4565873-4565892 | Msa0050640:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | + | chr1_2:4565891-4565910 | Msa0050640:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | + | chr1_2:4565918-4565937 | Msa0050640:CDS | 35.0% | |
| GGAATGAACTGTCAAGATTG+TGG | + | chr1_2:4564996-4565015 | Msa0050640:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | - | chr1_2:4565025-4565044 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | - | chr1_2:4565258-4565277 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | + | chr1_2:4565827-4565846 | Msa0050640:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | + | chr1_2:4565890-4565909 | Msa0050640:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | - | chr1_2:4566086-4566105 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | + | chr1_2:4566085-4566104 | Msa0050640:CDS | 40.0% | |
| GGAATGAACTGTCAAGATTG+TGG | + | chr1_2:4564996-4565015 | Msa0050640:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | - | chr1_2:4565025-4565044 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | - | chr1_2:4565258-4565277 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | + | chr1_2:4565827-4565846 | Msa0050640:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | + | chr1_2:4565890-4565909 | Msa0050640:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | - | chr1_2:4566086-4566105 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | + | chr1_2:4566085-4566104 | Msa0050640:CDS | 40.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | + | chr1_2:4564657-4564676 | Msa0050640:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | + | chr1_2:4564663-4564682 | Msa0050640:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | + | chr1_2:4564957-4564976 | Msa0050640:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | + | chr1_2:4564966-4564985 | Msa0050640:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | + | chr1_2:4564969-4564988 | Msa0050640:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | + | chr1_2:4565056-4565075 | Msa0050640:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | + | chr1_2:4565057-4565076 | Msa0050640:CDS | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | - | chr1_2:4565266-4565285 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | + | chr1_2:4565263-4565282 | Msa0050640:CDS | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | + | chr1_2:4565474-4565493 | Msa0050640:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | + | chr1_2:4565779-4565798 | Msa0050640:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | + | chr1_2:4565876-4565895 | Msa0050640:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | - | chr1_2:4566092-4566111 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | + | chr1_2:4566089-4566108 | Msa0050640:CDS | 45.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | + | chr1_2:4564657-4564676 | Msa0050640:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | + | chr1_2:4564663-4564682 | Msa0050640:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | + | chr1_2:4564957-4564976 | Msa0050640:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | + | chr1_2:4564966-4564985 | Msa0050640:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | + | chr1_2:4564969-4564988 | Msa0050640:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | + | chr1_2:4565056-4565075 | Msa0050640:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | + | chr1_2:4565057-4565076 | Msa0050640:CDS | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | - | chr1_2:4565266-4565285 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | + | chr1_2:4565263-4565282 | Msa0050640:CDS | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | + | chr1_2:4565474-4565493 | Msa0050640:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | + | chr1_2:4565779-4565798 | Msa0050640:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | + | chr1_2:4565876-4565895 | Msa0050640:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | - | chr1_2:4566092-4566111 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | + | chr1_2:4566089-4566108 | Msa0050640:CDS | 45.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | + | chr1_2:4564960-4564979 | Msa0050640:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | + | chr1_2:4564972-4564991 | Msa0050640:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | + | chr1_2:4565224-4565243 | Msa0050640:CDS | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | - | chr1_2:4565233-4565252 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | - | chr1_2:4565234-4565253 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | - | chr1_2:4565816-4565835 | None:intergenic | 50.0% | |
| ACTAGTCCAAATGCTGCTGC+TGG | + | chr1_2:4565948-4565967 | Msa0050640:CDS | 50.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | + | chr1_2:4564960-4564979 | Msa0050640:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | + | chr1_2:4564972-4564991 | Msa0050640:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | + | chr1_2:4565224-4565243 | Msa0050640:CDS | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | - | chr1_2:4565233-4565252 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | - | chr1_2:4565234-4565253 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | - | chr1_2:4565816-4565835 | None:intergenic | 50.0% | |
| ACTAGTCCAAATGCTGCTGC+TGG | + | chr1_2:4565948-4565967 | Msa0050640:CDS | 50.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | + | chr1_2:4564975-4564994 | Msa0050640:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | - | chr1_2:4565133-4565152 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | + | chr1_2:4565794-4565813 | Msa0050640:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | + | chr1_2:4565805-4565824 | Msa0050640:CDS | 55.0% | |
| AGTCCAAATGCTGCTGCTGG+TGG | + | chr1_2:4565951-4565970 | Msa0050640:CDS | 55.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | + | chr1_2:4564975-4564994 | Msa0050640:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | - | chr1_2:4565133-4565152 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | + | chr1_2:4565794-4565813 | Msa0050640:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | + | chr1_2:4565805-4565824 | Msa0050640:CDS | 55.0% | |
| AGTCCAAATGCTGCTGCTGG+TGG | + | chr1_2:4565951-4565970 | Msa0050640:CDS | 55.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | + | chr1_2:4565117-4565136 | Msa0050640:CDS | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | + | chr1_2:4565797-4565816 | Msa0050640:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | - | chr1_2:4565801-4565820 | None:intergenic | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | - | chr1_2:4565957-4565976 | None:intergenic | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | + | chr1_2:4565954-4565973 | Msa0050640:CDS | 60.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | + | chr1_2:4565117-4565136 | Msa0050640:CDS | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | + | chr1_2:4565797-4565816 | Msa0050640:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | - | chr1_2:4565801-4565820 | None:intergenic | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | - | chr1_2:4565957-4565976 | None:intergenic | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | + | chr1_2:4565954-4565973 | Msa0050640:CDS | 60.0% | |
| CGTTCGCGGCGTTTAGCAGC+TGG | - | chr1_2:4565119-4565138 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | - | chr1_2:4565798-4565817 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | + | chr1_2:4565969-4565988 | Msa0050640:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | + | chr1_2:4565981-4566000 | Msa0050640:CDS | 65.0% |
| CGTTCGCGGCGTTTAGCAGC+TGG | - | chr1_2:4565119-4565138 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | - | chr1_2:4565798-4565817 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | + | chr1_2:4565969-4565988 | Msa0050640:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | + | chr1_2:4565981-4566000 | Msa0050640:CDS | 65.0% |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | + | chr1_2:4565959-4565978 | Msa0050640:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | + | chr1_2:4565960-4565979 | Msa0050640:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | + | chr1_2:4565972-4565991 | Msa0050640:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | + | chr1_2:4565975-4565994 | Msa0050640:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | + | chr1_2:4565984-4566003 | Msa0050640:CDS | 70.0% |
| TTCGCCACCGCTGCCACCAC+CGG | - | chr1_2:4565991-4566010 | None:intergenic | 70.0% | |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | + | chr1_2:4565959-4565978 | Msa0050640:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | + | chr1_2:4565960-4565979 | Msa0050640:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | + | chr1_2:4565972-4565991 | Msa0050640:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | + | chr1_2:4565975-4565994 | Msa0050640:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | + | chr1_2:4565984-4566003 | Msa0050640:CDS | 70.0% |
| TTCGCCACCGCTGCCACCAC+CGG | - | chr1_2:4565991-4566010 | None:intergenic | 70.0% | |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | + | chr1_2:4565990-4566009 | Msa0050640:CDS | 75.0% |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | + | chr1_2:4565990-4566009 | Msa0050640:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4564651 | 4566142 | 4564651 | ID=Msa0050640;Name=Msa0050640 |
| chr1_2 | mRNA | 4564651 | 4566142 | 4564651 | ID=Msa0050640-mRNA-1;Parent=Msa0050640;Name=Msa0050640-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0|1|1|1|2|0|333 |
| chr1_2 | exon | 4564651 | 4565284 | 4564651 | ID=Msa0050640-mRNA-1:exon:1180;Parent=Msa0050640-mRNA-1 |
| chr1_2 | exon | 4565775 | 4566142 | 4565775 | ID=Msa0050640-mRNA-1:exon:1181;Parent=Msa0050640-mRNA-1 |
| chr1_2 | CDS | 4564651 | 4565284 | 4564651 | ID=Msa0050640-mRNA-1:cds;Parent=Msa0050640-mRNA-1 |
| chr1_2 | CDS | 4565775 | 4566142 | 4565775 | ID=Msa0050640-mRNA-1:cds;Parent=Msa0050640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
