Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050680 | XP_003589349.4 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050680 | sp|Q9LQZ5|SRS5_ARATH | 45.580 | 362 | 152 | 12 | 1 | 333 | 1 | 346 | 8.19e-80 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050680 | A0A396JLJ5 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 667 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0050680 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003100 | Msa0050680 | 0.834384 | 3.092857e-56 | -8.615850e-47 |
| Msa0050640 | Msa0050680 | 0.972416 | 9.904672e-135 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050680 | MtrunA17_Chr1g0155791 | 97.337 | 338 | 4 | 3 | 1 | 333 | 1 | 338 | 0.0 | 667 |
| Msa0050680 | MtrunA17_Chr3g0142171 | 52.381 | 336 | 108 | 16 | 1 | 330 | 1 | 290 | 1.18e-86 | 262 |
| Msa0050680 | MtrunA17_Chr5g0404781 | 46.307 | 352 | 141 | 12 | 1 | 333 | 1 | 323 | 4.71e-71 | 223 |
| Msa0050680 | MtrunA17_Chr8g0372461 | 44.034 | 352 | 157 | 11 | 1 | 333 | 1 | 331 | 7.09e-69 | 218 |
| Msa0050680 | MtrunA17_Chr5g0441921 | 45.062 | 162 | 82 | 3 | 119 | 273 | 124 | 285 | 1.40e-37 | 137 |
| Msa0050680 | MtrunA17_Chr3g0082511 | 35.814 | 215 | 113 | 6 | 93 | 286 | 107 | 317 | 5.64e-35 | 130 |
| Msa0050680 | MtrunA17_Chr4g0035591 | 41.611 | 149 | 62 | 2 | 116 | 264 | 17 | 140 | 2.74e-34 | 124 |
| Msa0050680 | MtrunA17_Chr8g0353111 | 39.779 | 181 | 96 | 3 | 119 | 286 | 124 | 304 | 1.61e-31 | 120 |
| Msa0050680 | MtrunA17_Chr0c01g0489181 | 59.459 | 37 | 15 | 0 | 117 | 153 | 65 | 101 | 1.98e-13 | 65.9 |
| Msa0050680 | MtrunA17_Chr2g0281741 | 63.158 | 38 | 14 | 0 | 116 | 153 | 147 | 184 | 1.11e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0050680 | AT1G75520.1 | 45.580 | 362 | 152 | 12 | 1 | 333 | 1 | 346 | 8.33e-81 | 249 |
| Msa0050680 | AT1G19790.2 | 45.299 | 351 | 166 | 11 | 1 | 332 | 1 | 344 | 1.12e-79 | 246 |
| Msa0050680 | AT1G19790.1 | 45.299 | 351 | 166 | 11 | 1 | 332 | 1 | 344 | 1.12e-79 | 246 |
| Msa0050680 | AT3G51060.1 | 45.687 | 313 | 136 | 8 | 44 | 333 | 69 | 370 | 2.08e-73 | 231 |
| Msa0050680 | AT5G66350.1 | 42.391 | 368 | 140 | 12 | 1 | 333 | 1 | 331 | 2.98e-67 | 214 |
| Msa0050680 | AT5G66350.3 | 41.598 | 363 | 140 | 12 | 1 | 328 | 1 | 326 | 3.42e-65 | 209 |
| Msa0050680 | AT5G66350.2 | 42.017 | 357 | 135 | 12 | 1 | 322 | 1 | 320 | 7.20e-64 | 206 |
| Msa0050680 | AT2G21400.4 | 42.791 | 215 | 83 | 6 | 116 | 327 | 6 | 183 | 1.27e-46 | 156 |
| Msa0050680 | AT2G21400.2 | 42.791 | 215 | 83 | 6 | 116 | 327 | 7 | 184 | 1.28e-46 | 156 |
| Msa0050680 | AT4G36260.1 | 41.379 | 232 | 93 | 8 | 45 | 266 | 48 | 246 | 5.73e-46 | 159 |
| Msa0050680 | AT2G21400.3 | 41.981 | 212 | 74 | 6 | 116 | 327 | 7 | 169 | 1.30e-44 | 151 |
| Msa0050680 | AT2G21400.1 | 41.981 | 212 | 74 | 6 | 116 | 327 | 6 | 168 | 1.48e-44 | 150 |
| Msa0050680 | AT2G18120.1 | 40.175 | 229 | 85 | 6 | 67 | 266 | 1 | 206 | 8.89e-44 | 150 |
| Msa0050680 | AT2G18120.2 | 40.625 | 224 | 89 | 5 | 67 | 266 | 1 | 204 | 2.57e-41 | 144 |
| Msa0050680 | AT5G12330.1 | 45.625 | 160 | 75 | 3 | 119 | 266 | 112 | 271 | 8.61e-37 | 135 |
| Msa0050680 | AT5G12330.2 | 45.625 | 160 | 75 | 3 | 119 | 266 | 112 | 271 | 8.61e-37 | 135 |
| Msa0050680 | AT5G12330.4 | 45.625 | 160 | 75 | 3 | 119 | 266 | 199 | 358 | 1.13e-36 | 136 |
| Msa0050680 | AT5G33210.2 | 61.538 | 91 | 31 | 2 | 117 | 207 | 15 | 101 | 1.12e-30 | 112 |
| Msa0050680 | AT5G33210.1 | 61.538 | 91 | 31 | 2 | 117 | 207 | 50 | 136 | 1.56e-30 | 114 |
| Msa0050680 | AT3G54430.1 | 35.185 | 162 | 81 | 4 | 115 | 272 | 37 | 178 | 1.65e-22 | 93.2 |
| Msa0050680 | AT5G12330.3 | 82.609 | 46 | 8 | 0 | 119 | 164 | 112 | 157 | 5.00e-21 | 90.5 |
Find 69 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATCCCTCTGGAGCTTC+TGG | 0.278538 | 1_2:+4668490 | Msa0050680:CDS |
| TCCGATGAATCAACAAGATT+TGG | 0.294425 | 1_2:+4668196 | Msa0050680:CDS |
| AGCTCCTCTTAATGCTTTCA+TGG | 0.295162 | 1_2:+4669351 | Msa0050680:CDS |
| CACTCATGTCTTTAGGATCT+TGG | 0.300540 | 1_2:-4669397 | None:intergenic |
| TGAATTCACCGGCGGTGTTC+AGG | 0.312818 | 1_2:+4669071 | Msa0050680:CDS |
| TATATACCTGTGGTAGTAAT+AGG | 0.332609 | 1_2:-4668535 | None:intergenic |
| AGGTCTTCAAGTGGTGGTTT+AGG | 0.350386 | 1_2:+4668232 | Msa0050680:CDS |
| GGTGGTGGCGAGGGTTCTTC+CGG | 0.367254 | 1_2:+4669235 | Msa0050680:CDS |
| CCACCACCAGCAGCAGCATT+TGG | 0.392576 | 1_2:-4669220 | None:intergenic |
| CGTTCGCGGCGTTTAGCAGC+TGG | 0.397352 | 1_2:-4668382 | None:intergenic |
| CCTCTTAATGCTTTCATGGC+TGG | 0.408461 | 1_2:+4669355 | Msa0050680:CDS |
| GTGGACAATCTTTCTTAGCT+TGG | 0.415642 | 1_2:-4668288 | None:intergenic |
| TGAGTTGTTGCTGCCGTTCG+CGG | 0.429437 | 1_2:-4668396 | None:intergenic |
| GGCGAGGGTTCTTCCGGTGG+TGG | 0.430350 | 1_2:+4669241 | Msa0050680:CDS |
| ACCAAATCTTGTTGATTCAT+CGG | 0.431484 | 1_2:-4668197 | None:intergenic |
| TTGAAATTAGGGTTGGAGTT+GGG | 0.437119 | 1_2:+4669031 | Msa0050680:intron |
| AGTGGTGGTTTAGGTGGTGG+TGG | 0.442865 | 1_2:+4668241 | Msa0050680:CDS |
| GGTTCTTCCGGTGGTGGCAG+CGG | 0.446891 | 1_2:+4669247 | Msa0050680:CDS |
| TTCGCCACCGCTGCCACCAC+CGG | 0.449406 | 1_2:-4669254 | None:intergenic |
| CCAAATGCTGCTGCTGGTGG+TGG | 0.457278 | 1_2:+4669220 | Msa0050680:CDS |
| AAACTCATGTGAAAAGTACT+TGG | 0.464467 | 1_2:+4668356 | Msa0050680:CDS |
| TGCTGCTGCTGGTGGTGGCG+AGG | 0.465038 | 1_2:+4669225 | Msa0050680:CDS |
| TTGTATGATCAAGGACTTGA+AGG | 0.474373 | 1_2:+4669184 | Msa0050680:CDS |
| GAAAATCAAAATGATCCCTC+TGG | 0.474468 | 1_2:+4668481 | Msa0050680:CDS |
| TGTCTTTAGGATCTTGGAGG+TGG | 0.488834 | 1_2:-4669391 | None:intergenic |
| GCTGCTGCTGGTGGTGGCGA+GGG | 0.489260 | 1_2:+4669226 | Msa0050680:CDS |
| TCATGTCTTTAGGATCTTGG+AGG | 0.489282 | 1_2:-4669394 | None:intergenic |
| TATAGTGAAGAATACTCAAA+TGG | 0.492700 | 1_2:-4669325 | None:intergenic |
| TCAAGTGGTGGTTTAGGTGG+TGG | 0.495997 | 1_2:+4668238 | Msa0050680:CDS |
| ATGAAAGCATTAAGAGGAGC+TGG | 0.499046 | 1_2:-4669349 | None:intergenic |
| CCTGTGGTAGTAATAGGTAC+TGG | 0.504192 | 1_2:-4668529 | None:intergenic |
| TTCTCTCTAAGCAGTGGAAG+AGG | 0.504749 | 1_2:+4667929 | Msa0050680:CDS |
| ATTGTTAACATTTGTTGTGG+TGG | 0.506186 | 1_2:-4669302 | None:intergenic |
| GTGTTACAAAACAACATGGC+TGG | 0.510933 | 1_2:+4667902 | None:intergenic |
| TCTTCCGGTGGTGGCAGCGG+TGG | 0.515802 | 1_2:+4669250 | Msa0050680:CDS |
| TCTTCAAGTGGTGGTTTAGG+TGG | 0.516785 | 1_2:+4668235 | Msa0050680:CDS |
| AGTAATAGGTACTGGAGTAC+AGG | 0.518362 | 1_2:-4668521 | None:intergenic |
| CCAGCCATGAAAGCATTAAG+AGG | 0.523927 | 1_2:-4669355 | None:intergenic |
| TTTGAAATTAGGGTTGGAGT+TGG | 0.534737 | 1_2:+4669030 | Msa0050680:intron |
| GGTGGTGGCAGCGGTGGCGA+AGG | 0.539736 | 1_2:+4669256 | Msa0050680:CDS |
| AACGAAGAGATCTACAACAA+AGG | 0.541118 | 1_2:+4668022 | Msa0050680:CDS |
| GGTTTCTTCTCTCTAAGCAG+TGG | 0.547720 | 1_2:+4667923 | Msa0050680:CDS |
| TTTACACACCTGAACACCGC+CGG | 0.552531 | 1_2:-4669079 | None:intergenic |
| GAAGATTGTTGATGTTGTTG+TGG | 0.555117 | 1_2:-4668058 | None:intergenic |
| TCCACCGGAGCTGAATTCAC+CGG | 0.555263 | 1_2:+4669060 | Msa0050680:CDS |
| GAACTTGTTGCAAGAGTCGA+GGG | 0.557726 | 1_2:+4668323 | Msa0050680:CDS |
| CAGCTGCTAAACGCCGCGAA+CGG | 0.557914 | 1_2:+4668383 | Msa0050680:CDS |
| GTCTTTAGGATCTTGGAGGT+GGG | 0.561171 | 1_2:-4669390 | None:intergenic |
| CCAGTACCTATTACTACCAC+AGG | 0.564967 | 1_2:+4668529 | Msa0050680:CDS |
| CAAACTGCTGTGAACATAGG+AGG | 0.565014 | 1_2:+4669142 | Msa0050680:CDS |
| ACTAGTCCAAATGCTGCTGC+TGG | 0.565581 | 1_2:+4669214 | Msa0050680:CDS |
| GCCGGTGAATTCAGCTCCGG+TGG | 0.569608 | 1_2:-4669061 | None:intergenic |
| TATCAAACTGCTGTGAACAT+AGG | 0.572121 | 1_2:+4669139 | Msa0050680:CDS |
| GGTGGCGAGGGTTCTTCCGG+TGG | 0.572206 | 1_2:+4669238 | Msa0050680:CDS |
| ACCGCCGGTGAATTCAGCTC+CGG | 0.574562 | 1_2:-4669064 | None:intergenic |
| TAGAGAACCAGAAGCTCCAG+AGG | 0.578477 | 1_2:-4668497 | None:intergenic |
| AGTCCAAATGCTGCTGCTGG+TGG | 0.584415 | 1_2:+4669217 | Msa0050680:CDS |
| AACTCATGTGAAAAGTACTT+GGG | 0.591492 | 1_2:+4668357 | Msa0050680:CDS |
| TGGATTGTTAACATTTGTTG+TGG | 0.600855 | 1_2:-4669305 | None:intergenic |
| AGAACTTGTTGCAAGAGTCG+AGG | 0.603647 | 1_2:+4668322 | Msa0050680:CDS |
| GTGATGAGGTCTTCAAGTGG+TGG | 0.621009 | 1_2:+4668226 | Msa0050680:CDS |
| GATTTGGTTTAACAGTGATG+AGG | 0.626557 | 1_2:+4668212 | Msa0050680:CDS |
| CAAGTTCTACATCTAAGATG+TGG | 0.632750 | 1_2:-4668307 | None:intergenic |
| GAAGAAAATAACAACAACAG+TGG | 0.647698 | 1_2:+4667974 | Msa0050680:CDS |
| GGAATGAACTGTCAAGATTG+TGG | 0.658447 | 1_2:+4668262 | Msa0050680:CDS |
| ACCGGAGCTGAATTCACCGG+CGG | 0.668533 | 1_2:+4669063 | Msa0050680:CDS |
| AGAGAACCAGAAGCTCCAGA+GGG | 0.671479 | 1_2:-4668496 | None:intergenic |
| GTGTGTAAAAGTGAGTGCAA+TGG | 0.678715 | 1_2:+4669093 | Msa0050680:CDS |
| ACAGTGATGAGGTCTTCAAG+TGG | 0.705760 | 1_2:+4668223 | Msa0050680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTTGATTTGAAATT+AGG | + | chr1_2:4669019-4669038 | Msa0050680:intron | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | + | chr1_2:4669020-4669039 | Msa0050680:intron | 10.0% |
| !!! | TTTTTATTTGATTTGAAATT+AGG | + | chr1_2:4669019-4669038 | Msa0050680:intron | 10.0% |
| !!! | TTTTATTTGATTTGAAATTA+GGG | + | chr1_2:4669020-4669039 | Msa0050680:intron | 10.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | + | chr1_2:4668115-4668134 | Msa0050680:CDS | 15.0% |
| !!! | TAATTTTTTGATATATAGCT+AGG | + | chr1_2:4668691-4668710 | Msa0050680:intron | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | - | chr1_2:4668805-4668824 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | + | chr1_2:4668985-4669004 | Msa0050680:intron | 15.0% |
| !!! | ATTAACAATTTTTACTCTTT+TGG | + | chr1_2:4668115-4668134 | Msa0050680:CDS | 15.0% |
| !!! | TAATTTTTTGATATATAGCT+AGG | + | chr1_2:4668691-4668710 | Msa0050680:intron | 15.0% |
| !! | ATAGAATATATAGACTAATT+AGG | - | chr1_2:4668805-4668824 | None:intergenic | 15.0% |
| !!! | TCTTTTTGAATTTTTTGATT+TGG | + | chr1_2:4668985-4669004 | Msa0050680:intron | 15.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | + | chr1_2:4668651-4668670 | Msa0050680:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | + | chr1_2:4668652-4668671 | Msa0050680:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | + | chr1_2:4668776-4668795 | Msa0050680:intron | 20.0% |
| !! | TAAAATGAAAAGATATTACG+AGG | + | chr1_2:4668651-4668670 | Msa0050680:intron | 20.0% |
| !! | AAAATGAAAAGATATTACGA+GGG | + | chr1_2:4668652-4668671 | Msa0050680:intron | 20.0% |
| !! | TCTATGAATCTATGATAAAT+AGG | + | chr1_2:4668776-4668795 | Msa0050680:intron | 20.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | + | chr1_2:4668121-4668140 | Msa0050680:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | - | chr1_2:4668548-4668567 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | + | chr1_2:4668899-4668918 | Msa0050680:intron | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | + | chr1_2:4668906-4668925 | Msa0050680:intron | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | + | chr1_2:4668958-4668977 | Msa0050680:intron | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | + | chr1_2:4669024-4669043 | Msa0050680:intron | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | - | chr1_2:4669328-4669347 | None:intergenic | 25.0% |
| !!! | AATTTTTACTCTTTTGGTGT+TGG | + | chr1_2:4668121-4668140 | Msa0050680:CDS | 25.0% |
| ! | TTTCTACATATATATACCTG+TGG | - | chr1_2:4668548-4668567 | None:intergenic | 25.0% |
| ! | TGAAGGATGAAAAAATTGTT+AGG | + | chr1_2:4668899-4668918 | Msa0050680:intron | 25.0% |
| ! | TGAAAAAATTGTTAGGTAAG+TGG | + | chr1_2:4668906-4668925 | Msa0050680:intron | 25.0% |
| ! | TAGCTATATAGAAACAATTG+AGG | + | chr1_2:4668958-4668977 | Msa0050680:intron | 25.0% |
| !!! | ATTTGATTTGAAATTAGGGT+TGG | + | chr1_2:4669024-4669043 | Msa0050680:intron | 25.0% |
| ! | TATAGTGAAGAATACTCAAA+TGG | - | chr1_2:4669328-4669347 | None:intergenic | 25.0% |
| GAAGAAAATAACAACAACAG+TGG | + | chr1_2:4667974-4667993 | Msa0050680:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | + | chr1_2:4668035-4668054 | Msa0050680:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | - | chr1_2:4668200-4668219 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | + | chr1_2:4668356-4668375 | Msa0050680:CDS | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | + | chr1_2:4668357-4668376 | Msa0050680:CDS | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | - | chr1_2:4668538-4668557 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | - | chr1_2:4668832-4668851 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | - | chr1_2:4668837-4668856 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | + | chr1_2:4668882-4668901 | Msa0050680:intron | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | + | chr1_2:4669175-4669194 | Msa0050680:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | - | chr1_2:4669305-4669324 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | - | chr1_2:4669308-4669327 | None:intergenic | 30.0% |
| GAAGAAAATAACAACAACAG+TGG | + | chr1_2:4667974-4667993 | Msa0050680:CDS | 30.0% | |
| !!! | ACAACAAAGGTTTTGAGATA+TGG | + | chr1_2:4668035-4668054 | Msa0050680:CDS | 30.0% |
| !! | ACCAAATCTTGTTGATTCAT+CGG | - | chr1_2:4668200-4668219 | None:intergenic | 30.0% |
| !! | AAACTCATGTGAAAAGTACT+TGG | + | chr1_2:4668356-4668375 | Msa0050680:CDS | 30.0% |
| !! | AACTCATGTGAAAAGTACTT+GGG | + | chr1_2:4668357-4668376 | Msa0050680:CDS | 30.0% |
| TATATACCTGTGGTAGTAAT+AGG | - | chr1_2:4668538-4668557 | None:intergenic | 30.0% | |
| TTGATAGAGTATGAAAGGAA+TGG | - | chr1_2:4668832-4668851 | None:intergenic | 30.0% | |
| !! | CTAAGTTGATAGAGTATGAA+AGG | - | chr1_2:4668837-4668856 | None:intergenic | 30.0% |
| ! | TTCTCTTTCTTTTCTTCTGA+AGG | + | chr1_2:4668882-4668901 | Msa0050680:intron | 30.0% |
| ! | AAGGGAATTTTGTATGATCA+AGG | + | chr1_2:4669175-4669194 | Msa0050680:CDS | 30.0% |
| !! | ATTGTTAACATTTGTTGTGG+TGG | - | chr1_2:4669305-4669324 | None:intergenic | 30.0% |
| ! | TGGATTGTTAACATTTGTTG+TGG | - | chr1_2:4669308-4669327 | None:intergenic | 30.0% |
| AACGAAGAGATCTACAACAA+AGG | + | chr1_2:4668022-4668041 | Msa0050680:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | - | chr1_2:4668061-4668080 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | + | chr1_2:4668196-4668215 | Msa0050680:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | + | chr1_2:4668212-4668231 | Msa0050680:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | - | chr1_2:4668310-4668329 | None:intergenic | 35.0% |
| GAAAATCAAAATGATCCCTC+TGG | + | chr1_2:4668481-4668500 | Msa0050680:CDS | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | + | chr1_2:4669030-4669049 | Msa0050680:intron | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | + | chr1_2:4669031-4669050 | Msa0050680:intron | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | + | chr1_2:4669139-4669158 | Msa0050680:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | + | chr1_2:4669157-4669176 | Msa0050680:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | + | chr1_2:4669184-4669203 | Msa0050680:CDS | 35.0% | |
| AACGAAGAGATCTACAACAA+AGG | + | chr1_2:4668022-4668041 | Msa0050680:CDS | 35.0% | |
| GAAGATTGTTGATGTTGTTG+TGG | - | chr1_2:4668061-4668080 | None:intergenic | 35.0% | |
| TCCGATGAATCAACAAGATT+TGG | + | chr1_2:4668196-4668215 | Msa0050680:CDS | 35.0% | |
| ! | GATTTGGTTTAACAGTGATG+AGG | + | chr1_2:4668212-4668231 | Msa0050680:CDS | 35.0% |
| ! | CAAGTTCTACATCTAAGATG+TGG | - | chr1_2:4668310-4668329 | None:intergenic | 35.0% |
| GAAAATCAAAATGATCCCTC+TGG | + | chr1_2:4668481-4668500 | Msa0050680:CDS | 35.0% | |
| ! | TTTGAAATTAGGGTTGGAGT+TGG | + | chr1_2:4669030-4669049 | Msa0050680:intron | 35.0% |
| TTGAAATTAGGGTTGGAGTT+GGG | + | chr1_2:4669031-4669050 | Msa0050680:intron | 35.0% | |
| TATCAAACTGCTGTGAACAT+AGG | + | chr1_2:4669139-4669158 | Msa0050680:CDS | 35.0% | |
| ! | ATAGGAGGAAGAGTTTTCAA+GGG | + | chr1_2:4669157-4669176 | Msa0050680:CDS | 35.0% |
| TTGTATGATCAAGGACTTGA+AGG | + | chr1_2:4669184-4669203 | Msa0050680:CDS | 35.0% | |
| GGAATGAACTGTCAAGATTG+TGG | + | chr1_2:4668262-4668281 | Msa0050680:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | - | chr1_2:4668291-4668310 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | - | chr1_2:4668524-4668543 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | + | chr1_2:4669093-4669112 | Msa0050680:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | + | chr1_2:4669156-4669175 | Msa0050680:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | - | chr1_2:4669352-4669371 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | + | chr1_2:4669351-4669370 | Msa0050680:CDS | 40.0% | |
| GGAATGAACTGTCAAGATTG+TGG | + | chr1_2:4668262-4668281 | Msa0050680:CDS | 40.0% | |
| GTGGACAATCTTTCTTAGCT+TGG | - | chr1_2:4668291-4668310 | None:intergenic | 40.0% | |
| !! | AGTAATAGGTACTGGAGTAC+AGG | - | chr1_2:4668524-4668543 | None:intergenic | 40.0% |
| GTGTGTAAAAGTGAGTGCAA+TGG | + | chr1_2:4669093-4669112 | Msa0050680:CDS | 40.0% | |
| ! | CATAGGAGGAAGAGTTTTCA+AGG | + | chr1_2:4669156-4669175 | Msa0050680:CDS | 40.0% |
| !! | ATGAAAGCATTAAGAGGAGC+TGG | - | chr1_2:4669352-4669371 | None:intergenic | 40.0% |
| AGCTCCTCTTAATGCTTTCA+TGG | + | chr1_2:4669351-4669370 | Msa0050680:CDS | 40.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | + | chr1_2:4667923-4667942 | Msa0050680:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | + | chr1_2:4667929-4667948 | Msa0050680:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | + | chr1_2:4668223-4668242 | Msa0050680:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | + | chr1_2:4668232-4668251 | Msa0050680:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | + | chr1_2:4668235-4668254 | Msa0050680:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | + | chr1_2:4668322-4668341 | Msa0050680:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | + | chr1_2:4668323-4668342 | Msa0050680:CDS | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | - | chr1_2:4668532-4668551 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | + | chr1_2:4668529-4668548 | Msa0050680:CDS | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | + | chr1_2:4668740-4668759 | Msa0050680:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | + | chr1_2:4669045-4669064 | Msa0050680:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | + | chr1_2:4669142-4669161 | Msa0050680:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | - | chr1_2:4669358-4669377 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | + | chr1_2:4669355-4669374 | Msa0050680:CDS | 45.0% | |
| GGTTTCTTCTCTCTAAGCAG+TGG | + | chr1_2:4667923-4667942 | Msa0050680:CDS | 45.0% | |
| TTCTCTCTAAGCAGTGGAAG+AGG | + | chr1_2:4667929-4667948 | Msa0050680:CDS | 45.0% | |
| ACAGTGATGAGGTCTTCAAG+TGG | + | chr1_2:4668223-4668242 | Msa0050680:CDS | 45.0% | |
| AGGTCTTCAAGTGGTGGTTT+AGG | + | chr1_2:4668232-4668251 | Msa0050680:CDS | 45.0% | |
| TCTTCAAGTGGTGGTTTAGG+TGG | + | chr1_2:4668235-4668254 | Msa0050680:CDS | 45.0% | |
| !! | AGAACTTGTTGCAAGAGTCG+AGG | + | chr1_2:4668322-4668341 | Msa0050680:CDS | 45.0% |
| !! | GAACTTGTTGCAAGAGTCGA+GGG | + | chr1_2:4668323-4668342 | Msa0050680:CDS | 45.0% |
| CCTGTGGTAGTAATAGGTAC+TGG | - | chr1_2:4668532-4668551 | None:intergenic | 45.0% | |
| CCAGTACCTATTACTACCAC+AGG | + | chr1_2:4668529-4668548 | Msa0050680:CDS | 45.0% | |
| GCTTAGTGATAGAGATCTCG+AGG | + | chr1_2:4668740-4668759 | Msa0050680:intron | 45.0% | |
| ! | GGAGTTGGGAAATTTTCCAC+CGG | + | chr1_2:4669045-4669064 | Msa0050680:CDS | 45.0% |
| CAAACTGCTGTGAACATAGG+AGG | + | chr1_2:4669142-4669161 | Msa0050680:CDS | 45.0% | |
| !! | CCAGCCATGAAAGCATTAAG+AGG | - | chr1_2:4669358-4669377 | None:intergenic | 45.0% |
| CCTCTTAATGCTTTCATGGC+TGG | + | chr1_2:4669355-4669374 | Msa0050680:CDS | 45.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | + | chr1_2:4668226-4668245 | Msa0050680:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | + | chr1_2:4668238-4668257 | Msa0050680:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | + | chr1_2:4668490-4668509 | Msa0050680:CDS | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | - | chr1_2:4668499-4668518 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | - | chr1_2:4668500-4668519 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | - | chr1_2:4669082-4669101 | None:intergenic | 50.0% | |
| ACTAGTCCAAATGCTGCTGC+TGG | + | chr1_2:4669214-4669233 | Msa0050680:CDS | 50.0% | |
| GTGATGAGGTCTTCAAGTGG+TGG | + | chr1_2:4668226-4668245 | Msa0050680:CDS | 50.0% | |
| TCAAGTGGTGGTTTAGGTGG+TGG | + | chr1_2:4668238-4668257 | Msa0050680:CDS | 50.0% | |
| !! | AATGATCCCTCTGGAGCTTC+TGG | + | chr1_2:4668490-4668509 | Msa0050680:CDS | 50.0% |
| AGAGAACCAGAAGCTCCAGA+GGG | - | chr1_2:4668499-4668518 | None:intergenic | 50.0% | |
| TAGAGAACCAGAAGCTCCAG+AGG | - | chr1_2:4668500-4668519 | None:intergenic | 50.0% | |
| TTTACACACCTGAACACCGC+CGG | - | chr1_2:4669082-4669101 | None:intergenic | 50.0% | |
| ACTAGTCCAAATGCTGCTGC+TGG | + | chr1_2:4669214-4669233 | Msa0050680:CDS | 50.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | + | chr1_2:4668241-4668260 | Msa0050680:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | - | chr1_2:4668399-4668418 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | + | chr1_2:4669060-4669079 | Msa0050680:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | + | chr1_2:4669071-4669090 | Msa0050680:CDS | 55.0% | |
| AGTCCAAATGCTGCTGCTGG+TGG | + | chr1_2:4669217-4669236 | Msa0050680:CDS | 55.0% | |
| ! | AGTGGTGGTTTAGGTGGTGG+TGG | + | chr1_2:4668241-4668260 | Msa0050680:CDS | 55.0% |
| TGAGTTGTTGCTGCCGTTCG+CGG | - | chr1_2:4668399-4668418 | None:intergenic | 55.0% | |
| TCCACCGGAGCTGAATTCAC+CGG | + | chr1_2:4669060-4669079 | Msa0050680:CDS | 55.0% | |
| TGAATTCACCGGCGGTGTTC+AGG | + | chr1_2:4669071-4669090 | Msa0050680:CDS | 55.0% | |
| AGTCCAAATGCTGCTGCTGG+TGG | + | chr1_2:4669217-4669236 | Msa0050680:CDS | 55.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | + | chr1_2:4668383-4668402 | Msa0050680:CDS | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | + | chr1_2:4669063-4669082 | Msa0050680:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | - | chr1_2:4669067-4669086 | None:intergenic | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | - | chr1_2:4669223-4669242 | None:intergenic | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | + | chr1_2:4669220-4669239 | Msa0050680:CDS | 60.0% | |
| CAGCTGCTAAACGCCGCGAA+CGG | + | chr1_2:4668383-4668402 | Msa0050680:CDS | 60.0% | |
| ACCGGAGCTGAATTCACCGG+CGG | + | chr1_2:4669063-4669082 | Msa0050680:CDS | 60.0% | |
| ACCGCCGGTGAATTCAGCTC+CGG | - | chr1_2:4669067-4669086 | None:intergenic | 60.0% | |
| CCACCACCAGCAGCAGCATT+TGG | - | chr1_2:4669223-4669242 | None:intergenic | 60.0% | |
| CCAAATGCTGCTGCTGGTGG+TGG | + | chr1_2:4669220-4669239 | Msa0050680:CDS | 60.0% | |
| CGTTCGCGGCGTTTAGCAGC+TGG | - | chr1_2:4668385-4668404 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | - | chr1_2:4669064-4669083 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | + | chr1_2:4669235-4669254 | Msa0050680:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | + | chr1_2:4669247-4669266 | Msa0050680:CDS | 65.0% |
| CGTTCGCGGCGTTTAGCAGC+TGG | - | chr1_2:4668385-4668404 | None:intergenic | 65.0% | |
| GCCGGTGAATTCAGCTCCGG+TGG | - | chr1_2:4669064-4669083 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCGAGGGTTCTTC+CGG | + | chr1_2:4669235-4669254 | Msa0050680:CDS | 65.0% |
| ! | GGTTCTTCCGGTGGTGGCAG+CGG | + | chr1_2:4669247-4669266 | Msa0050680:CDS | 65.0% |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | + | chr1_2:4669225-4669244 | Msa0050680:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | + | chr1_2:4669226-4669245 | Msa0050680:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | + | chr1_2:4669238-4669257 | Msa0050680:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | + | chr1_2:4669241-4669260 | Msa0050680:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | + | chr1_2:4669250-4669269 | Msa0050680:CDS | 70.0% |
| TTCGCCACCGCTGCCACCAC+CGG | - | chr1_2:4669257-4669276 | None:intergenic | 70.0% | |
| !! | TGCTGCTGCTGGTGGTGGCG+AGG | + | chr1_2:4669225-4669244 | Msa0050680:CDS | 70.0% |
| !! | GCTGCTGCTGGTGGTGGCGA+GGG | + | chr1_2:4669226-4669245 | Msa0050680:CDS | 70.0% |
| GGTGGCGAGGGTTCTTCCGG+TGG | + | chr1_2:4669238-4669257 | Msa0050680:CDS | 70.0% | |
| GGCGAGGGTTCTTCCGGTGG+TGG | + | chr1_2:4669241-4669260 | Msa0050680:CDS | 70.0% | |
| ! | TCTTCCGGTGGTGGCAGCGG+TGG | + | chr1_2:4669250-4669269 | Msa0050680:CDS | 70.0% |
| TTCGCCACCGCTGCCACCAC+CGG | - | chr1_2:4669257-4669276 | None:intergenic | 70.0% | |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | + | chr1_2:4669256-4669275 | Msa0050680:CDS | 75.0% |
| ! | GGTGGTGGCAGCGGTGGCGA+AGG | + | chr1_2:4669256-4669275 | Msa0050680:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 4667917 | 4669408 | 4667917 | ID=Msa0050680;Name=Msa0050680 |
| chr1_2 | mRNA | 4667917 | 4669408 | 4667917 | ID=Msa0050680-mRNA-1;Parent=Msa0050680;Name=Msa0050680-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0|1|1|1|2|0|333 |
| chr1_2 | exon | 4667917 | 4668550 | 4667917 | ID=Msa0050680-mRNA-1:exon:1228;Parent=Msa0050680-mRNA-1 |
| chr1_2 | exon | 4669041 | 4669408 | 4669041 | ID=Msa0050680-mRNA-1:exon:1229;Parent=Msa0050680-mRNA-1 |
| chr1_2 | CDS | 4667917 | 4668550 | 4667917 | ID=Msa0050680-mRNA-1:cds;Parent=Msa0050680-mRNA-1 |
| chr1_2 | CDS | 4669041 | 4669408 | 4669041 | ID=Msa0050680-mRNA-1:cds;Parent=Msa0050680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
