AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0003540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003540 MtrunA17_Chr1g0155181 100.000 86 0 0 1 86 1 86 1.59e-61 181
Msa0003540 MtrunA17_Chr3g0141601 73.404 94 21 2 1 93 1 91 8.20e-45 139
Msa0003540 MtrunA17_Chr3g0144631 73.134 67 18 0 5 71 14 80 2.21e-34 112
Msa0003540 MtrunA17_Chr3g0081631 57.447 94 33 3 1 93 4 91 2.51e-32 108
Msa0003540 MtrunA17_Chr7g0255841 57.647 85 30 1 9 93 14 92 1.43e-30 103
Msa0003540 MtrunA17_Chr3g0141641 47.253 91 45 1 6 93 2 92 9.66e-29 99.0
Msa0003540 MtrunA17_Chr5g0404101 65.217 69 24 0 2 70 14 82 1.82e-28 98.6
Msa0003540 MtrunA17_Chr6g0449111 58.571 70 29 0 2 71 5 74 3.15e-28 97.4
Msa0003540 MtrunA17_Chr8g0373111 55.224 67 29 1 4 70 2 67 6.22e-26 91.3
Msa0003540 MtrunA17_Chr8g0373121 55.224 67 29 1 4 70 2 67 6.22e-26 91.3
Msa0003540 MtrunA17_Chr8g0373131 55.224 67 29 1 4 70 2 67 6.25e-26 91.3
Msa0003540 MtrunA17_Chr8g0373101 56.338 71 30 1 4 74 2 71 4.04e-24 86.7
Msa0003540 MtrunA17_Chr5g0404301 61.905 63 23 1 5 67 2 63 5.85e-24 86.3
Msa0003540 MtrunA17_Chr1g0162081 50.602 83 41 0 1 83 6 88 2.61e-23 90.5
Msa0003540 MtrunA17_Chr8g0364741 53.623 69 32 0 1 69 4 72 5.25e-22 83.2
Msa0003540 MtrunA17_Chr8g0365011 57.576 66 28 0 4 69 5 70 1.73e-21 85.1
Msa0003540 MtrunA17_Chr5g0436501 55.882 68 30 0 2 69 22 89 1.75e-21 85.1
Msa0003540 MtrunA17_Chr3g0104071 52.113 71 34 0 4 74 40 110 2.85e-20 82.4
Msa0003540 MtrunA17_Chr5g0429521 51.389 72 34 1 4 75 26 96 3.16e-20 82.4
Msa0003540 MtrunA17_Chr7g0241761 50.000 72 36 0 2 73 30 101 1.35e-19 80.5
Msa0003540 MtrunA17_Chr4g0062741 48.000 75 35 2 1 71 1 75 1.12e-17 75.5
Msa0003540 MtrunA17_Chr1g0210471 42.254 71 41 0 7 77 24 94 1.84e-16 71.2
Msa0003540 MtrunA17_Chr1g0194071 49.153 59 29 1 5 62 9 67 2.13e-14 62.8
Msa0003540 MtrunA17_Chr7g0270711 47.619 63 32 1 3 64 7 69 1.80e-13 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0003540 AT4G39250.1 58.621 87 36 0 7 93 14 100 6.09e-36 117
Msa0003540 AT1G75250.1 72.464 69 19 0 2 70 7 75 2.12e-33 112
Msa0003540 AT1G75250.2 72.464 69 19 0 2 70 7 75 2.52e-33 111
Msa0003540 AT2G21650.1 55.682 88 38 1 7 93 14 101 1.28e-31 107
Msa0003540 AT1G19510.1 69.841 63 19 0 10 72 15 77 1.60e-28 99.0
Msa0003540 AT2G18328.1 65.079 63 22 0 10 72 14 76 5.40e-27 94.7
Msa0003540 AT5G05790.2 52.632 76 35 1 4 79 28 102 2.50e-21 85.1
Msa0003540 AT5G05790.1 52.632 76 35 1 4 79 28 102 2.50e-21 85.1
Msa0003540 AT5G58900.1 53.030 66 31 0 4 69 31 96 2.66e-20 82.4
Msa0003540 AT2G38090.1 55.556 63 28 0 7 69 29 91 3.30e-20 82.4
Msa0003540 AT3G11280.2 49.315 73 37 0 7 79 33 105 3.41e-19 79.3
Msa0003540 AT3G11280.1 49.315 73 37 0 7 79 33 105 3.41e-19 79.3
Msa0003540 AT4G36570.1 72.727 44 12 0 7 50 12 55 5.09e-19 73.9
Msa0003540 AT5G08520.1 43.590 78 44 0 1 78 6 83 1.16e-16 72.8
Msa0003540 AT1G49010.1 43.836 73 38 1 2 71 3 75 8.26e-16 70.9
Msa0003540 AT5G23650.1 46.377 69 37 0 1 69 7 75 5.00e-14 65.9
Msa0003540 AT5G01200.1 43.662 71 39 1 5 74 28 98 1.60e-13 63.9
Msa0003540 AT5G04760.1 40.299 67 39 1 3 69 2 67 6.58e-13 62.0

Find 36 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGCAGCATTTCTGTATT+TGG 0.079428 1_1:+6118142 None:intergenic
GCTAGCTTCTGCCACCTATC+TGG 0.154946 1_1:+6118263 None:intergenic
AGAAATGCTGCAACAATTAA+AGG 0.224298 1_1:-6118134 Msa0003540:CDS
TTGACAGAACGGATCCAATA+TGG 0.314973 1_1:-6117478 Msa0003540:three_prime_UTR
CTAGCTTCTGCCACCTATCT+GGG 0.322954 1_1:+6118264 None:intergenic
GTTGCAGCATTTCTGTATTT+GGG 0.335288 1_1:+6118143 None:intergenic
CACGATGTATCTGTGCTATA+TGG 0.365872 1_1:-6117339 Msa0003540:three_prime_UTR
CAAAAGATTTGAGAATGCTT+TGG 0.369296 1_1:-6118306 Msa0003540:CDS
TGGGGTGTCCTTATCATAGA+TGG 0.425086 1_1:+6118283 None:intergenic
AACATAAACTTATGGTCAAA+TGG 0.434667 1_1:+6117231 None:intergenic
TTTGTAAGTCAATTATTTCA+AGG 0.441484 1_1:-6117301 Msa0003540:three_prime_UTR
TGAAGATTTGAAGCAAATTG+AGG 0.447717 1_1:-6118183 Msa0003540:CDS
TGCTTTGGCCATCTATGATA+AGG 0.453055 1_1:-6118291 Msa0003540:CDS
GATATATAAATGATAAATCA+TGG 0.500557 1_1:-6117254 Msa0003540:three_prime_UTR
CGTATATCATGCATCTAGCT+TGG 0.502919 1_1:-6117432 Msa0003540:three_prime_UTR
ATAGGTGGCAGAAGCTAGCA+AGG 0.504876 1_1:-6118259 Msa0003540:CDS
TTGTAAGTCAATTATTTCAA+GGG 0.512127 1_1:-6117300 Msa0003540:three_prime_UTR
CAGAAGCTAGCAAGGGCTGT+TGG 0.521879 1_1:-6118251 Msa0003540:CDS
GCATTTCTGTATTTGGGCAA+AGG 0.525051 1_1:+6118149 None:intergenic
ATGATAAGGACACCCCAGAT+AGG 0.538561 1_1:-6118277 Msa0003540:CDS
TTCTGTCAATACTTCACTGA+AGG 0.539972 1_1:+6117492 None:intergenic
TGACAGAACGGATCCAATAT+GGG 0.546105 1_1:-6117477 Msa0003540:three_prime_UTR
AAGCTAGCAAGGGCTGTTGG+AGG 0.552500 1_1:-6118248 Msa0003540:CDS
GAATGTCCTCAAGTTCAGCT+TGG 0.559569 1_1:-6118343 Msa0003540:CDS
TATATATCATCATGATCAAG+TGG 0.560225 1_1:+6117269 None:intergenic
AGCTAGCAAGGGCTGTTGGA+GGG 0.566835 1_1:-6118247 Msa0003540:CDS
AGACAGTTGAGGAAGTGAAA+AGG 0.586038 1_1:-6118223 Msa0003540:CDS
TGTTGTCCAAGCTGAACTTG+AGG 0.595382 1_1:+6118337 None:intergenic
GATTTGAAGCAAATTGAGGA+AGG 0.610917 1_1:-6118179 Msa0003540:CDS
TAGCTTCTGCCACCTATCTG+GGG 0.629096 1_1:+6118265 None:intergenic
TCAGTGAAGTATTGACAGAA+CGG 0.642693 1_1:-6117489 Msa0003540:exon
TAGGTGGCAGAAGCTAGCAA+GGG 0.655725 1_1:-6118258 Msa0003540:CDS
ATAAGGACACCCCAGATAGG+TGG 0.660087 1_1:-6118274 Msa0003540:CDS
ATTACAGTGACGAAGAACAA+AGG 0.662329 1_1:-6118106 Msa0003540:intron
TGTTGGAGGGAAGACAGTTG+AGG 0.663833 1_1:-6118234 Msa0003540:CDS
CAGAACGGATCCAATATGGG+TGG 0.678270 1_1:-6117474 Msa0003540:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTACAATTTTTTTTTTTA+AGG + chr1_1:6117603-6117622 None:intergenic 10.0%
!!! TATATTTTGTATATCTAATT+TGG - chr1_1:6117895-6117914 Msa0003540:intron 10.0%
!!! ATCTACAATTTTTTTTTTTA+AGG + chr1_1:6117603-6117622 None:intergenic 10.0%
!!! TATATTTTGTATATCTAATT+TGG - chr1_1:6117895-6117914 Msa0003540:intron 10.0%
!!! TTTTTTCACTAAATTTAATG+AGG - chr1_1:6117855-6117874 Msa0003540:intron 15.0%
!!! TAATGTAGATTTTTATTACT+AGG + chr1_1:6117938-6117957 None:intergenic 15.0%
!! GATATATAAATGATAAATCA+TGG - chr1_1:6118411-6118430 Msa0003540:five_prime_UTR 15.0%
!!! TTTTTTCACTAAATTTAATG+AGG - chr1_1:6117855-6117874 Msa0003540:intron 15.0%
!!! TAATGTAGATTTTTATTACT+AGG + chr1_1:6117938-6117957 None:intergenic 15.0%
!! GATATATAAATGATAAATCA+TGG - chr1_1:6118411-6118430 Msa0003540:five_prime_UTR 15.0%
!!! GTTCGTCTTATTAATATTTT+TGG - chr1_1:6117694-6117713 Msa0003540:intron 20.0%
!!! CTTCTTCTTGTTTATAAATA+TGG - chr1_1:6118080-6118099 Msa0003540:intron 20.0%
!!! TCTAATCTAATATTGTTTTC+TGG - chr1_1:6118275-6118294 Msa0003540:CDS 20.0%
!! TTTGTAAGTCAATTATTTCA+AGG - chr1_1:6118364-6118383 Msa0003540:five_prime_UTR 20.0%
!! TTGTAAGTCAATTATTTCAA+GGG - chr1_1:6118365-6118384 Msa0003540:five_prime_UTR 20.0%
!!! GTTCGTCTTATTAATATTTT+TGG - chr1_1:6117694-6117713 Msa0003540:intron 20.0%
!!! CTTCTTCTTGTTTATAAATA+TGG - chr1_1:6118080-6118099 Msa0003540:intron 20.0%
!!! TCTAATCTAATATTGTTTTC+TGG - chr1_1:6118275-6118294 Msa0003540:CDS 20.0%
!! TTTGTAAGTCAATTATTTCA+AGG - chr1_1:6118364-6118383 Msa0003540:five_prime_UTR 20.0%
!! TTGTAAGTCAATTATTTCAA+GGG - chr1_1:6118365-6118384 Msa0003540:five_prime_UTR 20.0%
! CGTATAAAACAGTAAGTTTA+TGG + chr1_1:6118044-6118063 None:intergenic 25.0%
!! TATGGAGAAGATTTTTATTG+TGG - chr1_1:6118098-6118117 Msa0003540:intron 25.0%
!! ATGGAGAAGATTTTTATTGT+GGG - chr1_1:6118099-6118118 Msa0003540:intron 25.0%
! TATATATCATCATGATCAAG+TGG + chr1_1:6118399-6118418 None:intergenic 25.0%
! CGTATAAAACAGTAAGTTTA+TGG + chr1_1:6118044-6118063 None:intergenic 25.0%
!! TATGGAGAAGATTTTTATTG+TGG - chr1_1:6118098-6118117 Msa0003540:intron 25.0%
!! ATGGAGAAGATTTTTATTGT+GGG - chr1_1:6118099-6118118 Msa0003540:intron 25.0%
! TATATATCATCATGATCAAG+TGG + chr1_1:6118399-6118418 None:intergenic 25.0%
CAAAAGATTTGAGAATGCTT+TGG - chr1_1:6117359-6117378 Msa0003540:three_prime_UTR 30.0%
! TGAAGATTTGAAGCAAATTG+AGG - chr1_1:6117482-6117501 Msa0003540:three_prime_UTR 30.0%
AGAAATGCTGCAACAATTAA+AGG - chr1_1:6117531-6117550 Msa0003540:intron 30.0%
AGTCATTAGAAACTCATACA+CGG - chr1_1:6117637-6117656 Msa0003540:intron 30.0%
GTCTATTGTATTTGTAATGC+AGG - chr1_1:6118136-6118155 Msa0003540:CDS 30.0%
!!! TCTAATATTGTTTTCTGGCT+TGG - chr1_1:6118280-6118299 Msa0003540:CDS 30.0%
CAAAAGATTTGAGAATGCTT+TGG - chr1_1:6117359-6117378 Msa0003540:three_prime_UTR 30.0%
! TGAAGATTTGAAGCAAATTG+AGG - chr1_1:6117482-6117501 Msa0003540:three_prime_UTR 30.0%
AGAAATGCTGCAACAATTAA+AGG - chr1_1:6117531-6117550 Msa0003540:intron 30.0%
AGTCATTAGAAACTCATACA+CGG - chr1_1:6117637-6117656 Msa0003540:intron 30.0%
GTCTATTGTATTTGTAATGC+AGG - chr1_1:6118136-6118155 Msa0003540:CDS 30.0%
!!! TCTAATATTGTTTTCTGGCT+TGG - chr1_1:6118280-6118299 Msa0003540:CDS 30.0%
! GATTTGAAGCAAATTGAGGA+AGG - chr1_1:6117486-6117505 Msa0003540:exon 35.0%
GTTGCAGCATTTCTGTATTT+GGG + chr1_1:6117525-6117544 None:intergenic 35.0%
TGTTGCAGCATTTCTGTATT+TGG + chr1_1:6117526-6117545 None:intergenic 35.0%
ATTACAGTGACGAAGAACAA+AGG - chr1_1:6117559-6117578 Msa0003540:intron 35.0%
TTCATTTACACACACCACAA+AGG - chr1_1:6118003-6118022 Msa0003540:intron 35.0%
TTCTGTCAATACTTCACTGA+AGG + chr1_1:6118176-6118195 None:intergenic 35.0%
!! TCAGTGAAGTATTGACAGAA+CGG - chr1_1:6118176-6118195 Msa0003540:CDS 35.0%
!!! CATTTTTTCTCCACCCATAT+TGG + chr1_1:6118204-6118223 None:intergenic 35.0%
! GATTTGAAGCAAATTGAGGA+AGG - chr1_1:6117486-6117505 Msa0003540:exon 35.0%
GTTGCAGCATTTCTGTATTT+GGG + chr1_1:6117525-6117544 None:intergenic 35.0%
TGTTGCAGCATTTCTGTATT+TGG + chr1_1:6117526-6117545 None:intergenic 35.0%
ATTACAGTGACGAAGAACAA+AGG - chr1_1:6117559-6117578 Msa0003540:intron 35.0%
TTCATTTACACACACCACAA+AGG - chr1_1:6118003-6118022 Msa0003540:intron 35.0%
TTCTGTCAATACTTCACTGA+AGG + chr1_1:6118176-6118195 None:intergenic 35.0%
!! TCAGTGAAGTATTGACAGAA+CGG - chr1_1:6118176-6118195 Msa0003540:CDS 35.0%
!!! CATTTTTTCTCCACCCATAT+TGG + chr1_1:6118204-6118223 None:intergenic 35.0%
TGCTTTGGCCATCTATGATA+AGG - chr1_1:6117374-6117393 Msa0003540:three_prime_UTR 40.0%
AGACAGTTGAGGAAGTGAAA+AGG - chr1_1:6117442-6117461 Msa0003540:three_prime_UTR 40.0%
GCATTTCTGTATTTGGGCAA+AGG + chr1_1:6117519-6117538 None:intergenic 40.0%
AGTAAGTTTATGGTCCCTCA+TGG + chr1_1:6118034-6118053 None:intergenic 40.0%
TTGACAGAACGGATCCAATA+TGG - chr1_1:6118187-6118206 Msa0003540:CDS 40.0%
TGACAGAACGGATCCAATAT+GGG - chr1_1:6118188-6118207 Msa0003540:CDS 40.0%
CGTATATCATGCATCTAGCT+TGG - chr1_1:6118233-6118252 Msa0003540:CDS 40.0%
CACGATGTATCTGTGCTATA+TGG - chr1_1:6118326-6118345 Msa0003540:CDS 40.0%
TGTGTGAATGAATGAGCCAA+TGG + chr1_1:6117245-6117264 None:intergenic 40.0%
TGCTTTGGCCATCTATGATA+AGG - chr1_1:6117374-6117393 Msa0003540:three_prime_UTR 40.0%
AGACAGTTGAGGAAGTGAAA+AGG - chr1_1:6117442-6117461 Msa0003540:three_prime_UTR 40.0%
GCATTTCTGTATTTGGGCAA+AGG + chr1_1:6117519-6117538 None:intergenic 40.0%
AGTAAGTTTATGGTCCCTCA+TGG + chr1_1:6118034-6118053 None:intergenic 40.0%
TTGACAGAACGGATCCAATA+TGG - chr1_1:6118187-6118206 Msa0003540:CDS 40.0%
TGACAGAACGGATCCAATAT+GGG - chr1_1:6118188-6118207 Msa0003540:CDS 40.0%
CGTATATCATGCATCTAGCT+TGG - chr1_1:6118233-6118252 Msa0003540:CDS 40.0%
CACGATGTATCTGTGCTATA+TGG - chr1_1:6118326-6118345 Msa0003540:CDS 40.0%
GAATGTCCTCAAGTTCAGCT+TGG - chr1_1:6117322-6117341 Msa0003540:three_prime_UTR 45.0%
TGTTGTCCAAGCTGAACTTG+AGG + chr1_1:6117331-6117350 None:intergenic 45.0%
! TGGGGTGTCCTTATCATAGA+TGG + chr1_1:6117385-6117404 None:intergenic 45.0%
ATGATAAGGACACCCCAGAT+AGG - chr1_1:6117388-6117407 Msa0003540:three_prime_UTR 45.0%
ATACACGGATAGACGAGTCA+GGG - chr1_1:6117652-6117671 Msa0003540:intron 45.0%
ATAAGACGAACGAAGTGACC+TGG + chr1_1:6117685-6117704 None:intergenic 45.0%
! ACCACAAAGGTACAACCATG+AGG - chr1_1:6118016-6118035 Msa0003540:intron 45.0%
! CCACAAAGGTACAACCATGA+GGG - chr1_1:6118017-6118036 Msa0003540:intron 45.0%
GAATGTCCTCAAGTTCAGCT+TGG - chr1_1:6117322-6117341 Msa0003540:three_prime_UTR 45.0%
TGTTGTCCAAGCTGAACTTG+AGG + chr1_1:6117331-6117350 None:intergenic 45.0%
! TGGGGTGTCCTTATCATAGA+TGG + chr1_1:6117385-6117404 None:intergenic 45.0%
ATGATAAGGACACCCCAGAT+AGG - chr1_1:6117388-6117407 Msa0003540:three_prime_UTR 45.0%
ATACACGGATAGACGAGTCA+GGG - chr1_1:6117652-6117671 Msa0003540:intron 45.0%
ATAAGACGAACGAAGTGACC+TGG + chr1_1:6117685-6117704 None:intergenic 45.0%
! ACCACAAAGGTACAACCATG+AGG - chr1_1:6118016-6118035 Msa0003540:intron 45.0%
! CCACAAAGGTACAACCATGA+GGG - chr1_1:6118017-6118036 Msa0003540:intron 45.0%
ATAAGGACACCCCAGATAGG+TGG - chr1_1:6117391-6117410 Msa0003540:three_prime_UTR 50.0%
TAGCTTCTGCCACCTATCTG+GGG + chr1_1:6117403-6117422 None:intergenic 50.0%
CTAGCTTCTGCCACCTATCT+GGG + chr1_1:6117404-6117423 None:intergenic 50.0%
ATAGGTGGCAGAAGCTAGCA+AGG - chr1_1:6117406-6117425 Msa0003540:three_prime_UTR 50.0%
TAGGTGGCAGAAGCTAGCAA+GGG - chr1_1:6117407-6117426 Msa0003540:three_prime_UTR 50.0%
TGTTGGAGGGAAGACAGTTG+AGG - chr1_1:6117431-6117450 Msa0003540:three_prime_UTR 50.0%
CATACACGGATAGACGAGTC+AGG - chr1_1:6117651-6117670 Msa0003540:intron 50.0%
! ACGAGTCAGGGTTTGAAACC+AGG - chr1_1:6117664-6117683 Msa0003540:intron 50.0%
CCCTCATGGTTGTACCTTTG+TGG + chr1_1:6118020-6118039 None:intergenic 50.0%
CAGAACGGATCCAATATGGG+TGG - chr1_1:6118191-6118210 Msa0003540:CDS 50.0%
ATAAGGACACCCCAGATAGG+TGG - chr1_1:6117391-6117410 Msa0003540:three_prime_UTR 50.0%
TAGCTTCTGCCACCTATCTG+GGG + chr1_1:6117403-6117422 None:intergenic 50.0%
CTAGCTTCTGCCACCTATCT+GGG + chr1_1:6117404-6117423 None:intergenic 50.0%
ATAGGTGGCAGAAGCTAGCA+AGG - chr1_1:6117406-6117425 Msa0003540:three_prime_UTR 50.0%
TAGGTGGCAGAAGCTAGCAA+GGG - chr1_1:6117407-6117426 Msa0003540:three_prime_UTR 50.0%
TGTTGGAGGGAAGACAGTTG+AGG - chr1_1:6117431-6117450 Msa0003540:three_prime_UTR 50.0%
CATACACGGATAGACGAGTC+AGG - chr1_1:6117651-6117670 Msa0003540:intron 50.0%
! ACGAGTCAGGGTTTGAAACC+AGG - chr1_1:6117664-6117683 Msa0003540:intron 50.0%
CCCTCATGGTTGTACCTTTG+TGG + chr1_1:6118020-6118039 None:intergenic 50.0%
CAGAACGGATCCAATATGGG+TGG - chr1_1:6118191-6118210 Msa0003540:CDS 50.0%
! GCTAGCTTCTGCCACCTATC+TGG + chr1_1:6117405-6117424 None:intergenic 55.0%
CAGAAGCTAGCAAGGGCTGT+TGG - chr1_1:6117414-6117433 Msa0003540:three_prime_UTR 55.0%
AAGCTAGCAAGGGCTGTTGG+AGG - chr1_1:6117417-6117436 Msa0003540:three_prime_UTR 55.0%
AGCTAGCAAGGGCTGTTGGA+GGG - chr1_1:6117418-6117437 Msa0003540:three_prime_UTR 55.0%
! GCTAGCTTCTGCCACCTATC+TGG + chr1_1:6117405-6117424 None:intergenic 55.0%
CAGAAGCTAGCAAGGGCTGT+TGG - chr1_1:6117414-6117433 Msa0003540:three_prime_UTR 55.0%
AAGCTAGCAAGGGCTGTTGG+AGG - chr1_1:6117417-6117436 Msa0003540:three_prime_UTR 55.0%
AGCTAGCAAGGGCTGTTGGA+GGG - chr1_1:6117418-6117437 Msa0003540:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 6117244 6118443 6117244 ID=Msa0003540;Name=Msa0003540
chr1_1 mRNA 6117244 6118443 6117244 ID=Msa0003540-mRNA-1;Parent=Msa0003540;Name=Msa0003540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=80|1|1|1|1|1|2|261|93
chr1_1 exon 6117244 6117529 6117244 ID=Msa0003540-mRNA-1:exon:1946;Parent=Msa0003540-mRNA-1
chr1_1 exon 6118107 6118443 6118107 ID=Msa0003540-mRNA-1:exon:1945;Parent=Msa0003540-mRNA-1
chr1_1 five_prime_UTR 6118364 6118443 6118364 ID=Msa0003540-mRNA-1:five_prime_utr;Parent=Msa0003540-mRNA-1
chr1_1 CDS 6118107 6118363 6118107 ID=Msa0003540-mRNA-1:cds;Parent=Msa0003540-mRNA-1
chr1_1 CDS 6117505 6117529 6117505 ID=Msa0003540-mRNA-1:cds;Parent=Msa0003540-mRNA-1
chr1_1 three_prime_UTR 6117244 6117504 6117244 ID=Msa0003540-mRNA-1:three_prime_utr;Parent=Msa0003540-mRNA-1
Gene Sequence

>Msa0003540

ATGTCCTCAAGTTCAGCTTGGACAACAAAGCAAAACAAAAGATTTGAGAATGCTTTGGCCATCTATGATAAGGACACCCCAGATAGGTGGCAGAAGCTAGCAAGGGCTGTTGGAGGGAAGACAGTTGAGGAAGTGAAAAGGCATTATGAGATGTTAGTTGAAGATTTGAAGCAAATTGAGGAAGGTCATGTTCCTTTGCCCAAATACAGAAATGCTGCAACAATTAAAGGTTACAATTACAGTGACGAAGAACAAAGGTTGAAGTATCTAAGCCTTCAGTGA
Protein sequence

>Msa0003540

MSSSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNAATIKGYNYSDEEQRLKYLSLQ*