AlfalfaGEDB | Msa0145790

M. sativa cultivar zhongmu-4 / Msa0145790

KEGG: -
GO: GO:0001558 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006355 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0012505 GO:0016020 GO:0019219 GO:0019222 GO:0030308 GO:0030544 GO:0031072 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031965 GO:0031967 GO:0031975 GO:0034641 GO:0034645 GO:0040008 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045926 GO:0045934 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051128 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061649 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0140030 GO:0140035 GO:0140036 GO:1901360 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000278 GO:2000279 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145790	XP_013466107.1	100.000	93	0	0	1	93	1	93	1.48e-62	194

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145790	sp\|F4JVB8\|RADL1_ARATH	58.621	87	36	0	7	93	14	100	5.99e-35	117

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145790	A0A072VEW4	100.000	93	0	0	1	93	1	93	7.08e-63	194

TFs/TRs:

Gene ID	Type	Classification
Msa0145790	TF	MYB-related

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003540	Msa0145790	0.986098	1.145276e-165	-8.615850e-47
Msa0058280	Msa0145790	0.966119	1.696737e-125	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145790	MtrunA17_Chr1g0155181	100.000	86	0	0	1	86	1	86	1.59e-61	181
Msa0145790	MtrunA17_Chr3g0141601	73.404	94	21	2	1	93	1	91	8.20e-45	139
Msa0145790	MtrunA17_Chr3g0144631	73.134	67	18	0	5	71	14	80	2.21e-34	112
Msa0145790	MtrunA17_Chr3g0081631	57.447	94	33	3	1	93	4	91	2.51e-32	108
Msa0145790	MtrunA17_Chr7g0255841	57.647	85	30	1	9	93	14	92	1.43e-30	103
Msa0145790	MtrunA17_Chr3g0141641	47.253	91	45	1	6	93	2	92	9.66e-29	99.0
Msa0145790	MtrunA17_Chr5g0404101	65.217	69	24	0	2	70	14	82	1.82e-28	98.6
Msa0145790	MtrunA17_Chr6g0449111	58.571	70	29	0	2	71	5	74	3.15e-28	97.4
Msa0145790	MtrunA17_Chr8g0373111	55.224	67	29	1	4	70	2	67	6.22e-26	91.3
Msa0145790	MtrunA17_Chr8g0373121	55.224	67	29	1	4	70	2	67	6.22e-26	91.3
Msa0145790	MtrunA17_Chr8g0373131	55.224	67	29	1	4	70	2	67	6.25e-26	91.3
Msa0145790	MtrunA17_Chr8g0373101	56.338	71	30	1	4	74	2	71	4.04e-24	86.7
Msa0145790	MtrunA17_Chr5g0404301	61.905	63	23	1	5	67	2	63	5.85e-24	86.3
Msa0145790	MtrunA17_Chr1g0162081	50.602	83	41	0	1	83	6	88	2.61e-23	90.5
Msa0145790	MtrunA17_Chr8g0364741	53.623	69	32	0	1	69	4	72	5.25e-22	83.2
Msa0145790	MtrunA17_Chr8g0365011	57.576	66	28	0	4	69	5	70	1.73e-21	85.1
Msa0145790	MtrunA17_Chr5g0436501	55.882	68	30	0	2	69	22	89	1.75e-21	85.1
Msa0145790	MtrunA17_Chr3g0104071	52.113	71	34	0	4	74	40	110	2.85e-20	82.4
Msa0145790	MtrunA17_Chr5g0429521	51.389	72	34	1	4	75	26	96	3.16e-20	82.4
Msa0145790	MtrunA17_Chr7g0241761	50.000	72	36	0	2	73	30	101	1.35e-19	80.5
Msa0145790	MtrunA17_Chr4g0062741	48.000	75	35	2	1	71	1	75	1.12e-17	75.5
Msa0145790	MtrunA17_Chr1g0210471	42.254	71	41	0	7	77	24	94	1.84e-16	71.2
Msa0145790	MtrunA17_Chr1g0194071	49.153	59	29	1	5	62	9	67	2.13e-14	62.8
Msa0145790	MtrunA17_Chr7g0270711	47.619	63	32	1	3	64	7	69	1.80e-13	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0145790	AT4G39250.1	58.621	87	36	0	7	93	14	100	6.09e-36	117
Msa0145790	AT1G75250.1	72.464	69	19	0	2	70	7	75	2.12e-33	112
Msa0145790	AT1G75250.2	72.464	69	19	0	2	70	7	75	2.52e-33	111
Msa0145790	AT2G21650.1	55.682	88	38	1	7	93	14	101	1.28e-31	107
Msa0145790	AT1G19510.1	69.841	63	19	0	10	72	15	77	1.60e-28	99.0
Msa0145790	AT2G18328.1	65.079	63	22	0	10	72	14	76	5.40e-27	94.7
Msa0145790	AT5G05790.2	52.632	76	35	1	4	79	28	102	2.50e-21	85.1
Msa0145790	AT5G05790.1	52.632	76	35	1	4	79	28	102	2.50e-21	85.1
Msa0145790	AT5G58900.1	53.030	66	31	0	4	69	31	96	2.66e-20	82.4
Msa0145790	AT2G38090.1	55.556	63	28	0	7	69	29	91	3.30e-20	82.4
Msa0145790	AT3G11280.2	49.315	73	37	0	7	79	33	105	3.41e-19	79.3
Msa0145790	AT3G11280.1	49.315	73	37	0	7	79	33	105	3.41e-19	79.3
Msa0145790	AT4G36570.1	72.727	44	12	0	7	50	12	55	5.09e-19	73.9
Msa0145790	AT5G08520.1	43.590	78	44	0	1	78	6	83	1.16e-16	72.8
Msa0145790	AT1G49010.1	43.836	73	38	1	2	71	3	75	8.26e-16	70.9
Msa0145790	AT5G23650.1	46.377	69	37	0	1	69	7	75	5.00e-14	65.9
Msa0145790	AT5G01200.1	43.662	71	39	1	5	74	28	98	1.60e-13	63.9
Msa0145790	AT5G04760.1	40.299	67	39	1	3	69	2	67	6.58e-13	62.0

Find 35 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTGCAGCATTTCTGTATT+TGG	0.079428	1_4:+5500216	None:intergenic
GCTAGCTTCTGCCACCTATC+TGG	0.154946	1_4:+5500337	None:intergenic
AGAAATGCTGCAACAATTAA+AGG	0.224298	1_4:-5500208	Msa0145790:CDS
TTGACAGAACGGATCCAATA+TGG	0.314973	1_4:-5499552	Msa0145790:three_prime_UTR
CTAGCTTCTGCCACCTATCT+GGG	0.322954	1_4:+5500338	None:intergenic
GTTGCAGCATTTCTGTATTT+GGG	0.335288	1_4:+5500217	None:intergenic
CACGATGTATCTGTGCTATA+TGG	0.365872	1_4:-5499413	Msa0145790:three_prime_UTR
CAAAAGATTTGAGAATGCTT+TGG	0.369296	1_4:-5500380	Msa0145790:CDS
TGGGGTGTCCTTATCATAGA+TGG	0.425086	1_4:+5500357	None:intergenic
TTTGTAAGTCAATTATTTCA+AGG	0.441484	1_4:-5499375	Msa0145790:three_prime_UTR
TGAAGATTTGAAGCAAATTG+AGG	0.447717	1_4:-5500257	Msa0145790:CDS
TGCTTTGGCCATCTATGATA+AGG	0.453055	1_4:-5500365	Msa0145790:CDS
GATATATAAATGATAAATCA+TGG	0.493737	1_4:-5499328	Msa0145790:three_prime_UTR
CGTATATCATGCATCTAGCT+TGG	0.502919	1_4:-5499506	Msa0145790:three_prime_UTR
ATAGGTGGCAGAAGCTAGCA+AGG	0.504876	1_4:-5500333	Msa0145790:CDS
TTGTAAGTCAATTATTTCAA+GGG	0.512127	1_4:-5499374	Msa0145790:three_prime_UTR
CAGAAGCTAGCAAGGGCTGT+TGG	0.521879	1_4:-5500325	Msa0145790:CDS
GCATTTCTGTATTTGGGCAA+AGG	0.525051	1_4:+5500223	None:intergenic
ATGATAAGGACACCCCAGAT+AGG	0.538561	1_4:-5500351	Msa0145790:CDS
TTCTGTCAATACTTCACTGA+AGG	0.539972	1_4:+5499566	None:intergenic
TGACAGAACGGATCCAATAT+GGG	0.546105	1_4:-5499551	Msa0145790:three_prime_UTR
AAGCTAGCAAGGGCTGTTGG+AGG	0.552500	1_4:-5500322	Msa0145790:CDS
GAATGTCCTCAAGTTCAGCT+TGG	0.559569	1_4:-5500417	Msa0145790:CDS
TATATATCATCATGATCAAG+TGG	0.560225	1_4:+5499343	None:intergenic
AGCTAGCAAGGGCTGTTGGA+GGG	0.566835	1_4:-5500321	Msa0145790:CDS
AGACAGTTGAGGAAGTGAAA+AGG	0.586038	1_4:-5500297	Msa0145790:CDS
TGTTGTCCAAGCTGAACTTG+AGG	0.595382	1_4:+5500411	None:intergenic
GATTTGAAGCAAATTGAGGA+AGG	0.610917	1_4:-5500253	Msa0145790:CDS
TAGCTTCTGCCACCTATCTG+GGG	0.629096	1_4:+5500339	None:intergenic
TCAGTGAAGTATTGACAGAA+CGG	0.642693	1_4:-5499563	Msa0145790:exon
TAGGTGGCAGAAGCTAGCAA+GGG	0.655725	1_4:-5500332	Msa0145790:CDS
ATAAGGACACCCCAGATAGG+TGG	0.660087	1_4:-5500348	Msa0145790:CDS
ATTACAGTGACGAAGAACAA+AGG	0.662329	1_4:-5500180	Msa0145790:intron
TGTTGGAGGGAAGACAGTTG+AGG	0.663833	1_4:-5500308	Msa0145790:CDS
CAGAACGGATCCAATATGGG+TGG	0.678270	1_4:-5499548	Msa0145790:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TATCTACAATTTTTTTTTTA+AGG	+	chr1_4:5499677-5499696	None:intergenic	10.0%
!!!	TATATTTTGTATATCTAATT+TGG	-	chr1_4:5499968-5499987	Msa0145790:intron	10.0%
!!!	TATCTACAATTTTTTTTTTA+AGG	+	chr1_4:5499677-5499696	None:intergenic	10.0%
!!!	TATATTTTGTATATCTAATT+TGG	-	chr1_4:5499968-5499987	Msa0145790:intron	10.0%
!!!	TTTTTTCACTAAATTTAATG+AGG	-	chr1_4:5499928-5499947	Msa0145790:intron	15.0%
!!!	TAATGTAGATTTTTATTACT+AGG	+	chr1_4:5500011-5500030	None:intergenic	15.0%
!!	GATATATAAATGATAAATCA+TGG	-	chr1_4:5500485-5500504	Msa0145790:five_prime_UTR	15.0%
!!!	TTTTTTCACTAAATTTAATG+AGG	-	chr1_4:5499928-5499947	Msa0145790:intron	15.0%
!!!	TAATGTAGATTTTTATTACT+AGG	+	chr1_4:5500011-5500030	None:intergenic	15.0%
!!	GATATATAAATGATAAATCA+TGG	-	chr1_4:5500485-5500504	Msa0145790:five_prime_UTR	15.0%
!!!	CTTCTTCTTGTTTATAAATA+TGG	-	chr1_4:5500154-5500173	Msa0145790:intron	20.0%
!!!	TCTAATCTAATATTGTTTTC+TGG	-	chr1_4:5500349-5500368	Msa0145790:CDS	20.0%
!!	TTTGTAAGTCAATTATTTCA+AGG	-	chr1_4:5500438-5500457	Msa0145790:five_prime_UTR	20.0%
!!	TTGTAAGTCAATTATTTCAA+GGG	-	chr1_4:5500439-5500458	Msa0145790:five_prime_UTR	20.0%
!!!	CTTCTTCTTGTTTATAAATA+TGG	-	chr1_4:5500154-5500173	Msa0145790:intron	20.0%
!!!	TCTAATCTAATATTGTTTTC+TGG	-	chr1_4:5500349-5500368	Msa0145790:CDS	20.0%
!!	TTTGTAAGTCAATTATTTCA+AGG	-	chr1_4:5500438-5500457	Msa0145790:five_prime_UTR	20.0%
!!	TTGTAAGTCAATTATTTCAA+GGG	-	chr1_4:5500439-5500458	Msa0145790:five_prime_UTR	20.0%
!!	GTTCGTCTTACTAATATTTT+TGG	-	chr1_4:5499767-5499786	Msa0145790:intron	25.0%
!	CGTATAAAACAGTAAGTTTA+TGG	+	chr1_4:5500117-5500136	None:intergenic	25.0%
!!	TATGGAGAAGATTTTTATTG+TGG	-	chr1_4:5500172-5500191	Msa0145790:intron	25.0%
!!	ATGGAGAAGATTTTTATTGT+GGG	-	chr1_4:5500173-5500192	Msa0145790:intron	25.0%
!	TATATATCATCATGATCAAG+TGG	+	chr1_4:5500473-5500492	None:intergenic	25.0%
!!	GTTCGTCTTACTAATATTTT+TGG	-	chr1_4:5499767-5499786	Msa0145790:intron	25.0%
!	CGTATAAAACAGTAAGTTTA+TGG	+	chr1_4:5500117-5500136	None:intergenic	25.0%
!!	TATGGAGAAGATTTTTATTG+TGG	-	chr1_4:5500172-5500191	Msa0145790:intron	25.0%
!!	ATGGAGAAGATTTTTATTGT+GGG	-	chr1_4:5500173-5500192	Msa0145790:intron	25.0%
!	TATATATCATCATGATCAAG+TGG	+	chr1_4:5500473-5500492	None:intergenic	25.0%
	CAAAAGATTTGAGAATGCTT+TGG	-	chr1_4:5499433-5499452	Msa0145790:three_prime_UTR	30.0%
!	TGAAGATTTGAAGCAAATTG+AGG	-	chr1_4:5499556-5499575	Msa0145790:three_prime_UTR	30.0%
	AGAAATGCTGCAACAATTAA+AGG	-	chr1_4:5499605-5499624	Msa0145790:intron	30.0%
	AGTCATTAGAAACTCATACA+CGG	-	chr1_4:5499710-5499729	Msa0145790:intron	30.0%
	AGCAACACAAATTTAAAGAG+AGG	-	chr1_4:5499884-5499903	Msa0145790:intron	30.0%
	GTCTATTGTATTTGTAATGC+AGG	-	chr1_4:5500210-5500229	Msa0145790:CDS	30.0%
!!!	TCTAATATTGTTTTCTGGCT+TGG	-	chr1_4:5500354-5500373	Msa0145790:CDS	30.0%
	CAAAAGATTTGAGAATGCTT+TGG	-	chr1_4:5499433-5499452	Msa0145790:three_prime_UTR	30.0%
!	TGAAGATTTGAAGCAAATTG+AGG	-	chr1_4:5499556-5499575	Msa0145790:three_prime_UTR	30.0%
	AGAAATGCTGCAACAATTAA+AGG	-	chr1_4:5499605-5499624	Msa0145790:intron	30.0%
	AGTCATTAGAAACTCATACA+CGG	-	chr1_4:5499710-5499729	Msa0145790:intron	30.0%
	AGCAACACAAATTTAAAGAG+AGG	-	chr1_4:5499884-5499903	Msa0145790:intron	30.0%
	GTCTATTGTATTTGTAATGC+AGG	-	chr1_4:5500210-5500229	Msa0145790:CDS	30.0%
!!!	TCTAATATTGTTTTCTGGCT+TGG	-	chr1_4:5500354-5500373	Msa0145790:CDS	30.0%
!	GATTTGAAGCAAATTGAGGA+AGG	-	chr1_4:5499560-5499579	Msa0145790:exon	35.0%
	GTTGCAGCATTTCTGTATTT+GGG	+	chr1_4:5499599-5499618	None:intergenic	35.0%
	TGTTGCAGCATTTCTGTATT+TGG	+	chr1_4:5499600-5499619	None:intergenic	35.0%
	ATTACAGTGACGAAGAACAA+AGG	-	chr1_4:5499633-5499652	Msa0145790:intron	35.0%
	TTCATTTACACACACCACAA+AGG	-	chr1_4:5500076-5500095	Msa0145790:intron	35.0%
	TTCTGTCAATACTTCACTGA+AGG	+	chr1_4:5500250-5500269	None:intergenic	35.0%
!!	TCAGTGAAGTATTGACAGAA+CGG	-	chr1_4:5500250-5500269	Msa0145790:CDS	35.0%
!!!	CATTTTTTCTCCACCCATAT+TGG	+	chr1_4:5500278-5500297	None:intergenic	35.0%
!	GATTTGAAGCAAATTGAGGA+AGG	-	chr1_4:5499560-5499579	Msa0145790:exon	35.0%
	GTTGCAGCATTTCTGTATTT+GGG	+	chr1_4:5499599-5499618	None:intergenic	35.0%
	TGTTGCAGCATTTCTGTATT+TGG	+	chr1_4:5499600-5499619	None:intergenic	35.0%
	ATTACAGTGACGAAGAACAA+AGG	-	chr1_4:5499633-5499652	Msa0145790:intron	35.0%
	TTCATTTACACACACCACAA+AGG	-	chr1_4:5500076-5500095	Msa0145790:intron	35.0%
	TTCTGTCAATACTTCACTGA+AGG	+	chr1_4:5500250-5500269	None:intergenic	35.0%
!!	TCAGTGAAGTATTGACAGAA+CGG	-	chr1_4:5500250-5500269	Msa0145790:CDS	35.0%
!!!	CATTTTTTCTCCACCCATAT+TGG	+	chr1_4:5500278-5500297	None:intergenic	35.0%
	TGCTTTGGCCATCTATGATA+AGG	-	chr1_4:5499448-5499467	Msa0145790:three_prime_UTR	40.0%
	AGACAGTTGAGGAAGTGAAA+AGG	-	chr1_4:5499516-5499535	Msa0145790:three_prime_UTR	40.0%
	GCATTTCTGTATTTGGGCAA+AGG	+	chr1_4:5499593-5499612	None:intergenic	40.0%
	AGTAAGTTTATGGTCCCTCA+TGG	+	chr1_4:5500107-5500126	None:intergenic	40.0%
	TTGACAGAACGGATCCAATA+TGG	-	chr1_4:5500261-5500280	Msa0145790:CDS	40.0%
	TGACAGAACGGATCCAATAT+GGG	-	chr1_4:5500262-5500281	Msa0145790:CDS	40.0%
	CGTATATCATGCATCTAGCT+TGG	-	chr1_4:5500307-5500326	Msa0145790:CDS	40.0%
	CACGATGTATCTGTGCTATA+TGG	-	chr1_4:5500400-5500419	Msa0145790:CDS	40.0%
	TGTGTGAATGAATGAGCCAA+TGG	+	chr1_4:5499319-5499338	None:intergenic	40.0%
	TGCTTTGGCCATCTATGATA+AGG	-	chr1_4:5499448-5499467	Msa0145790:three_prime_UTR	40.0%
	AGACAGTTGAGGAAGTGAAA+AGG	-	chr1_4:5499516-5499535	Msa0145790:three_prime_UTR	40.0%
	GCATTTCTGTATTTGGGCAA+AGG	+	chr1_4:5499593-5499612	None:intergenic	40.0%
	AGTAAGTTTATGGTCCCTCA+TGG	+	chr1_4:5500107-5500126	None:intergenic	40.0%
	TTGACAGAACGGATCCAATA+TGG	-	chr1_4:5500261-5500280	Msa0145790:CDS	40.0%
	TGACAGAACGGATCCAATAT+GGG	-	chr1_4:5500262-5500281	Msa0145790:CDS	40.0%
	CGTATATCATGCATCTAGCT+TGG	-	chr1_4:5500307-5500326	Msa0145790:CDS	40.0%
	CACGATGTATCTGTGCTATA+TGG	-	chr1_4:5500400-5500419	Msa0145790:CDS	40.0%
	GAATGTCCTCAAGTTCAGCT+TGG	-	chr1_4:5499396-5499415	Msa0145790:three_prime_UTR	45.0%
	TGTTGTCCAAGCTGAACTTG+AGG	+	chr1_4:5499405-5499424	None:intergenic	45.0%
!	TGGGGTGTCCTTATCATAGA+TGG	+	chr1_4:5499459-5499478	None:intergenic	45.0%
	ATGATAAGGACACCCCAGAT+AGG	-	chr1_4:5499462-5499481	Msa0145790:three_prime_UTR	45.0%
	ATACACGGATAGACGAGTCA+GGG	-	chr1_4:5499725-5499744	Msa0145790:intron	45.0%
!	ACCACAAAGGTACAACCATG+AGG	-	chr1_4:5500089-5500108	Msa0145790:intron	45.0%
!	CCACAAAGGTACAACCATGA+GGG	-	chr1_4:5500090-5500109	Msa0145790:intron	45.0%
	GAATGTCCTCAAGTTCAGCT+TGG	-	chr1_4:5499396-5499415	Msa0145790:three_prime_UTR	45.0%
	TGTTGTCCAAGCTGAACTTG+AGG	+	chr1_4:5499405-5499424	None:intergenic	45.0%
!	TGGGGTGTCCTTATCATAGA+TGG	+	chr1_4:5499459-5499478	None:intergenic	45.0%
	ATGATAAGGACACCCCAGAT+AGG	-	chr1_4:5499462-5499481	Msa0145790:three_prime_UTR	45.0%
	ATACACGGATAGACGAGTCA+GGG	-	chr1_4:5499725-5499744	Msa0145790:intron	45.0%
!	ACCACAAAGGTACAACCATG+AGG	-	chr1_4:5500089-5500108	Msa0145790:intron	45.0%
!	CCACAAAGGTACAACCATGA+GGG	-	chr1_4:5500090-5500109	Msa0145790:intron	45.0%
	ATAAGGACACCCCAGATAGG+TGG	-	chr1_4:5499465-5499484	Msa0145790:three_prime_UTR	50.0%
	TAGCTTCTGCCACCTATCTG+GGG	+	chr1_4:5499477-5499496	None:intergenic	50.0%
	CTAGCTTCTGCCACCTATCT+GGG	+	chr1_4:5499478-5499497	None:intergenic	50.0%
	ATAGGTGGCAGAAGCTAGCA+AGG	-	chr1_4:5499480-5499499	Msa0145790:three_prime_UTR	50.0%
	TAGGTGGCAGAAGCTAGCAA+GGG	-	chr1_4:5499481-5499500	Msa0145790:three_prime_UTR	50.0%
	TGTTGGAGGGAAGACAGTTG+AGG	-	chr1_4:5499505-5499524	Msa0145790:three_prime_UTR	50.0%
	CATACACGGATAGACGAGTC+AGG	-	chr1_4:5499724-5499743	Msa0145790:intron	50.0%
!	ACGAGTCAGGGTTTGAAACC+AGG	-	chr1_4:5499737-5499756	Msa0145790:intron	50.0%
	GTAAGACGAACGAAGTGACC+TGG	+	chr1_4:5499758-5499777	None:intergenic	50.0%
	CCCTCATGGTTGTACCTTTG+TGG	+	chr1_4:5500093-5500112	None:intergenic	50.0%
	CAGAACGGATCCAATATGGG+TGG	-	chr1_4:5500265-5500284	Msa0145790:CDS	50.0%
	ATAAGGACACCCCAGATAGG+TGG	-	chr1_4:5499465-5499484	Msa0145790:three_prime_UTR	50.0%
	TAGCTTCTGCCACCTATCTG+GGG	+	chr1_4:5499477-5499496	None:intergenic	50.0%
	CTAGCTTCTGCCACCTATCT+GGG	+	chr1_4:5499478-5499497	None:intergenic	50.0%
	ATAGGTGGCAGAAGCTAGCA+AGG	-	chr1_4:5499480-5499499	Msa0145790:three_prime_UTR	50.0%
	TAGGTGGCAGAAGCTAGCAA+GGG	-	chr1_4:5499481-5499500	Msa0145790:three_prime_UTR	50.0%
	TGTTGGAGGGAAGACAGTTG+AGG	-	chr1_4:5499505-5499524	Msa0145790:three_prime_UTR	50.0%
	CATACACGGATAGACGAGTC+AGG	-	chr1_4:5499724-5499743	Msa0145790:intron	50.0%
!	ACGAGTCAGGGTTTGAAACC+AGG	-	chr1_4:5499737-5499756	Msa0145790:intron	50.0%
	GTAAGACGAACGAAGTGACC+TGG	+	chr1_4:5499758-5499777	None:intergenic	50.0%
	CCCTCATGGTTGTACCTTTG+TGG	+	chr1_4:5500093-5500112	None:intergenic	50.0%
	CAGAACGGATCCAATATGGG+TGG	-	chr1_4:5500265-5500284	Msa0145790:CDS	50.0%
!	GCTAGCTTCTGCCACCTATC+TGG	+	chr1_4:5499479-5499498	None:intergenic	55.0%
	CAGAAGCTAGCAAGGGCTGT+TGG	-	chr1_4:5499488-5499507	Msa0145790:three_prime_UTR	55.0%
	AAGCTAGCAAGGGCTGTTGG+AGG	-	chr1_4:5499491-5499510	Msa0145790:three_prime_UTR	55.0%
	AGCTAGCAAGGGCTGTTGGA+GGG	-	chr1_4:5499492-5499511	Msa0145790:three_prime_UTR	55.0%
!	GCTAGCTTCTGCCACCTATC+TGG	+	chr1_4:5499479-5499498	None:intergenic	55.0%
	CAGAAGCTAGCAAGGGCTGT+TGG	-	chr1_4:5499488-5499507	Msa0145790:three_prime_UTR	55.0%
	AAGCTAGCAAGGGCTGTTGG+AGG	-	chr1_4:5499491-5499510	Msa0145790:three_prime_UTR	55.0%
	AGCTAGCAAGGGCTGTTGGA+GGG	-	chr1_4:5499492-5499511	Msa0145790:three_prime_UTR	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	5499318	5500517	5499318	ID=Msa0145790;Name=Msa0145790
chr1_4	mRNA	5499318	5500517	5499318	ID=Msa0145790-mRNA-1;Parent=Msa0145790;Name=Msa0145790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=80\|1\|1\|1\|1\|1\|2\|261\|93
chr1_4	exon	5499318	5499603	5499318	ID=Msa0145790-mRNA-1:exon:2306;Parent=Msa0145790-mRNA-1
chr1_4	exon	5500181	5500517	5500181	ID=Msa0145790-mRNA-1:exon:2305;Parent=Msa0145790-mRNA-1
chr1_4	five_prime_UTR	5500438	5500517	5500438	ID=Msa0145790-mRNA-1:five_prime_utr;Parent=Msa0145790-mRNA-1
chr1_4	CDS	5500181	5500437	5500181	ID=Msa0145790-mRNA-1:cds;Parent=Msa0145790-mRNA-1
chr1_4	CDS	5499579	5499603	5499579	ID=Msa0145790-mRNA-1:cds;Parent=Msa0145790-mRNA-1
chr1_4	three_prime_UTR	5499318	5499578	5499318	ID=Msa0145790-mRNA-1:three_prime_utr;Parent=Msa0145790-mRNA-1

Gene Sequence	>Msa0145790 ATGTCCTCAAGTTCAGCTTGGACAACAAAGCAAAACAAAAGATTTGAGAATGCTTTGGCCATCTATGATAAGGACACCCCAGATAGGTGGCAGAAGCTAGCAAGGGCTGTTGGAGGGAAGACAGTTGAGGAAGTGAAAAGGCATTATGAGATGTTAGTTGAAGATTTGAAGCAAATTGAGGAAGGTCATGTTCCTTTGCCCAAATACAGAAATGCTGCAACAATTAAAGGTTACAATTACAGTGACGAAGAACAAAGGTTGAAGTATCTAAGCCTTCAGTGA
Protein sequence	>Msa0145790 MSSSSAWTTKQNKRFENALAIYDKDTPDRWQKLARAVGGKTVEEVKRHYEMLVEDLKQIEEGHVPLPKYRNAATIKGYNYSDEEQRLKYLSLQ*