Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006090 | XP_003588878.1 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006090 | sp|Q5FV41|FBT2_ARATH | 66.667 | 471 | 154 | 2 | 33 | 501 | 28 | 497 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006090 | Msa0045550 | 0.805421 | 1.345581e-49 | -8.615850e-47 |
| Msa0006090 | Msa0054800 | 0.837365 | 5.426653e-57 | -8.615850e-47 |
| Msa0006090 | Msa1359580 | 0.896410 | 3.790563e-76 | -8.615850e-47 |
| Msa0006090 | Msa1403650 | 0.892100 | 2.166879e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006090 | MtrunA17_Chr1g0150001 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1006 |
| Msa0006090 | MtrunA17_Chr1g0150041 | 42.804 | 271 | 118 | 2 | 35 | 302 | 27 | 263 | 3.38e-69 | 223 |
| Msa0006090 | MtrunA17_Chr1g0150031 | 51.531 | 196 | 89 | 1 | 302 | 497 | 2 | 191 | 1.16e-64 | 208 |
| Msa0006090 | MtrunA17_Chr1g0205221 | 33.333 | 426 | 259 | 9 | 40 | 447 | 93 | 511 | 2.89e-54 | 191 |
| Msa0006090 | MtrunA17_Chr3g0079271 | 27.792 | 403 | 277 | 5 | 74 | 467 | 123 | 520 | 1.62e-30 | 125 |
| Msa0006090 | MtrunA17_Chr2g0293351 | 26.209 | 393 | 269 | 8 | 75 | 454 | 46 | 430 | 3.56e-27 | 114 |
| Msa0006090 | MtrunA17_Chr3g0098661 | 33.333 | 198 | 127 | 2 | 266 | 462 | 295 | 488 | 7.16e-27 | 113 |
| Msa0006090 | MtrunA17_Chr3g0098661 | 27.143 | 210 | 142 | 5 | 37 | 240 | 3 | 207 | 2.58e-15 | 78.6 |
| Msa0006090 | MtrunA17_Chr2g0293371 | 26.567 | 335 | 205 | 9 | 139 | 454 | 28 | 340 | 1.39e-15 | 78.2 |
| Msa0006090 | MtrunA17_Chr2g0293361 | 28.177 | 181 | 125 | 2 | 277 | 454 | 57 | 235 | 3.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0006090 | AT5G25050.1 | 66.667 | 471 | 154 | 2 | 33 | 501 | 28 | 497 | 0.0 | 659 |
| Msa0006090 | AT1G79710.2 | 55.734 | 497 | 216 | 3 | 1 | 497 | 1 | 493 | 0.0 | 591 |
| Msa0006090 | AT1G79710.1 | 55.734 | 497 | 216 | 3 | 1 | 497 | 1 | 493 | 0.0 | 591 |
| Msa0006090 | AT5G25040.4 | 57.228 | 505 | 194 | 7 | 2 | 501 | 3 | 490 | 0.0 | 577 |
| Msa0006090 | AT5G25040.2 | 54.528 | 530 | 194 | 8 | 2 | 501 | 3 | 515 | 0.0 | 564 |
| Msa0006090 | AT5G25040.1 | 58.295 | 434 | 167 | 4 | 2 | 432 | 3 | 425 | 3.91e-179 | 511 |
| Msa0006090 | AT1G79710.3 | 56.140 | 399 | 174 | 1 | 1 | 399 | 1 | 398 | 6.03e-170 | 485 |
| Msa0006090 | AT5G25040.3 | 56.331 | 387 | 155 | 4 | 2 | 385 | 3 | 378 | 1.89e-153 | 442 |
| Msa0006090 | AT5G25040.5 | 60.511 | 352 | 128 | 4 | 152 | 501 | 1 | 343 | 1.57e-149 | 431 |
| Msa0006090 | AT5G10820.1 | 48.571 | 455 | 228 | 2 | 13 | 464 | 23 | 474 | 4.39e-143 | 421 |
| Msa0006090 | AT2G32040.2 | 32.944 | 428 | 265 | 10 | 62 | 477 | 6 | 423 | 1.38e-48 | 173 |
| Msa0006090 | AT2G32040.1 | 32.723 | 437 | 271 | 10 | 53 | 477 | 129 | 554 | 3.76e-48 | 175 |
| Msa0006090 | AT5G54860.1 | 25.873 | 487 | 294 | 9 | 37 | 462 | 3 | 483 | 1.02e-44 | 164 |
| Msa0006090 | AT1G04570.1 | 27.861 | 402 | 270 | 8 | 74 | 465 | 109 | 500 | 9.06e-28 | 117 |
| Msa0006090 | AT2G33280.1 | 27.273 | 407 | 270 | 8 | 74 | 465 | 106 | 501 | 1.60e-27 | 116 |
| Msa0006090 | AT2G33280.3 | 27.475 | 404 | 267 | 8 | 77 | 465 | 1 | 393 | 6.18e-27 | 113 |
| Msa0006090 | AT1G04570.2 | 30.769 | 208 | 137 | 3 | 260 | 465 | 150 | 352 | 2.65e-21 | 96.3 |
| Msa0006090 | AT2G33280.2 | 29.279 | 222 | 146 | 4 | 246 | 465 | 107 | 319 | 7.58e-18 | 85.5 |
| Msa0006090 | AT1G64890.1 | 23.515 | 421 | 297 | 8 | 46 | 456 | 19 | 424 | 4.85e-15 | 77.8 |
Find 109 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTGTGTTGGCAATTT+TGG | 0.063315 | 1_1:-8853022 | Msa0006090:CDS |
| CTTGGATTGTTAAGCCTTTA+TGG | 0.130713 | 1_1:-8854225 | Msa0006090:CDS |
| GGTATAATATTGCTCCTAAA+AGG | 0.175539 | 1_1:+8850831 | None:intergenic |
| TCCAGCTGGACTTATAATTT+TGG | 0.227795 | 1_1:-8852678 | Msa0006090:CDS |
| TCTTCTATTGGTGCACTATT+AGG | 0.233671 | 1_1:-8852877 | Msa0006090:CDS |
| TTTGGAGTAGTTGTTGTTTA+TGG | 0.240305 | 1_1:-8854364 | Msa0006090:CDS |
| TTGATGGTTGCAGGTTTATT+AGG | 0.248071 | 1_1:-8853084 | Msa0006090:intron |
| TTGGATTGTTAAGCCTTTAT+GGG | 0.253679 | 1_1:-8854224 | Msa0006090:CDS |
| GAACAAAGTTTGATAATCTT+TGG | 0.261678 | 1_1:-8850481 | Msa0006090:CDS |
| GGCATCTTTGTTCACCTTAT+AGG | 0.269657 | 1_1:-8852841 | Msa0006090:CDS |
| CAGTTGCTCTATGGTCTATC+AGG | 0.276942 | 1_1:-8850761 | Msa0006090:CDS |
| AGTCAAAGGGTGTTAGAATA+TGG | 0.282434 | 1_1:-8854453 | Msa0006090:CDS |
| GGTTTAGGTGGTGCTCTTGC+TGG | 0.292167 | 1_1:-8854331 | Msa0006090:CDS |
| GGAAGAAGAATGAAAGAGTT+AGG | 0.300985 | 1_1:+8850386 | None:intergenic |
| TGTGCCTTTAGTTCTTCTAT+TGG | 0.305955 | 1_1:-8852889 | Msa0006090:CDS |
| TGCCGGCATCCACAAAGTTT+TGG | 0.309039 | 1_1:+8852343 | None:intergenic |
| GGCTAACCATAGGGCCTATA+AGG | 0.323121 | 1_1:+8852827 | None:intergenic |
| AAGATTATCAAACTTTGTTC+TGG | 0.328960 | 1_1:+8850484 | None:intergenic |
| CATTCAGAGACTTACTCTTT+TGG | 0.332958 | 1_1:-8850787 | Msa0006090:CDS |
| AATCCGGTATACCAAACTTT+AGG | 0.344820 | 1_1:+8850705 | None:intergenic |
| AGCTCAAAGCTTTGTCCATC+TGG | 0.346803 | 1_1:-8850608 | Msa0006090:CDS |
| AATCTAGTACTAACCTTTCA+AGG | 0.365767 | 1_1:+8854642 | None:intergenic |
| CTGGACTTCTTTCATCATCA+TGG | 0.374263 | 1_1:-8850541 | Msa0006090:CDS |
| TATGGAATAAGTCAAGGTTT+AGG | 0.377756 | 1_1:-8854346 | Msa0006090:CDS |
| GCCTTAACAGCAGGGAGTGC+TGG | 0.387976 | 1_1:-8853000 | Msa0006090:CDS |
| TGTAGTCCACATAGCCTTGC+CGG | 0.387979 | 1_1:+8852326 | None:intergenic |
| CTTTGTCCATCTGGTATTGA+AGG | 0.389296 | 1_1:-8850599 | Msa0006090:CDS |
| AGAAACCAAGGATGTTGAAT+TGG | 0.391325 | 1_1:-8850321 | Msa0006090:CDS |
| GGTGGTGCTCTTGCTGGTGT+TGG | 0.393991 | 1_1:-8854325 | Msa0006090:CDS |
| CTGGAATTACATCTATTCCT+TGG | 0.397255 | 1_1:-8854243 | Msa0006090:CDS |
| ATGAGATTGAACCTAAAGTT+TGG | 0.398436 | 1_1:-8850716 | Msa0006090:CDS |
| TCCAGCACTCCCTGCTGTTA+AGG | 0.406873 | 1_1:+8852999 | None:intergenic |
| ACCAATAAAACATTCCTTCA+AGG | 0.408629 | 1_1:+8852235 | None:intergenic |
| TGGACTTCTTTCATCATCAT+GGG | 0.415817 | 1_1:-8850540 | Msa0006090:CDS |
| CTATTAGGATTCTCTATTAG+TGG | 0.425299 | 1_1:-8852862 | Msa0006090:CDS |
| CTAGGTGCACCAAAACTTTG+TGG | 0.428219 | 1_1:-8852352 | Msa0006090:intron |
| CGTAATCCTTTAGAGCGTAT+TGG | 0.433360 | 1_1:+8850810 | None:intergenic |
| CAAATCCCTCTGATATTACA+TGG | 0.434024 | 1_1:+8850142 | None:intergenic |
| TTTCTTCCACAGGAAAGTAT+AGG | 0.435044 | 1_1:-8850884 | Msa0006090:intron |
| CTGAGTTTGAATATCCTTGA+AGG | 0.437719 | 1_1:-8852249 | Msa0006090:CDS |
| TCAAATACCTGTGAGAAAGA+TGG | 0.438222 | 1_1:+8852192 | None:intergenic |
| TGTTCACCTTATAGGCCCTA+TGG | 0.452835 | 1_1:-8852833 | Msa0006090:intron |
| TAAACTTATGAAGGTGGAAA+AGG | 0.453542 | 1_1:-8850048 | Msa0006090:three_prime_UTR |
| CTTTCATCATCATGGGGTGG+TGG | 0.454756 | 1_1:-8850533 | Msa0006090:CDS |
| AGACACCAATTCAACATCCT+TGG | 0.456982 | 1_1:+8850316 | None:intergenic |
| GTATTCTGTATTTCATAGAC+AGG | 0.461954 | 1_1:-8850238 | Msa0006090:intron |
| ATCACAACAAAGACGTAATC+CGG | 0.462520 | 1_1:+8850689 | None:intergenic |
| CACCAAAACTTTGTGGATGC+CGG | 0.471200 | 1_1:-8852345 | Msa0006090:CDS |
| GTATAATATTGCTCCTAAAA+GGG | 0.472990 | 1_1:+8850832 | None:intergenic |
| ACCAAAATTATAAGTCCAGC+TGG | 0.476055 | 1_1:+8852677 | None:intergenic |
| TATTGAAATAAATATTGGCT+TGG | 0.478810 | 1_1:+8850207 | None:intergenic |
| GAACCTAAAGTTTGGTATAC+CGG | 0.482350 | 1_1:-8850708 | Msa0006090:CDS |
| ATTATACCAATACGCTCTAA+AGG | 0.485902 | 1_1:-8850816 | Msa0006090:CDS |
| TGCTATCAAGAGAAATGCAT+TGG | 0.489196 | 1_1:-8854396 | Msa0006090:CDS |
| CAAATACCTGTGAGAAAGAT+GGG | 0.493656 | 1_1:+8852193 | None:intergenic |
| CATTGAAGAATCAAGATGTA+TGG | 0.496871 | 1_1:-8852305 | Msa0006090:CDS |
| AGTTCAACCTTCTGAAGCAC+AGG | 0.498974 | 1_1:-8854272 | Msa0006090:CDS |
| TCTCTTGTACACAGTGTTGA+TGG | 0.499772 | 1_1:-8850296 | Msa0006090:CDS |
| CTGTGCAACACATGCATCAA+TGG | 0.501476 | 1_1:+8852957 | None:intergenic |
| TCTTCTTCCAAAAGAAAATG+TGG | 0.503749 | 1_1:-8850372 | Msa0006090:CDS |
| AGTTTAGCATAAACTTATGA+AGG | 0.505493 | 1_1:-8850057 | Msa0006090:three_prime_UTR |
| TCTGAAGCACAGGTTTATGC+TGG | 0.507686 | 1_1:-8854262 | Msa0006090:CDS |
| TGTCAGAAGCAAGGGAAGGA+TGG | 0.513050 | 1_1:+8852923 | None:intergenic |
| TCAGTAAGAAGACCCCATAA+AGG | 0.514757 | 1_1:+8854211 | None:intergenic |
| AAAAGAAAATGTGGATTCAA+AGG | 0.516295 | 1_1:-8850363 | Msa0006090:CDS |
| AAATGAAGAAAGAAAGTCAA+AGG | 0.519772 | 1_1:-8854467 | Msa0006090:CDS |
| GTCAGAAGCAAGGGAAGGAT+GGG | 0.531751 | 1_1:+8852924 | None:intergenic |
| GGTTTGATGACTATTCCAGC+TGG | 0.533339 | 1_1:-8852692 | Msa0006090:CDS |
| AAATTGCCAACACAAGATGA+AGG | 0.535053 | 1_1:+8853025 | None:intergenic |
| GTTGTTTATGGAATAAGTCA+AGG | 0.536630 | 1_1:-8854352 | Msa0006090:CDS |
| GTTAGGGCAAATAGAGAGAA+GGG | 0.537236 | 1_1:-8850177 | Msa0006090:three_prime_UTR |
| TGCACCAATAGAAGAACTAA+AGG | 0.537673 | 1_1:+8852885 | None:intergenic |
| AATATCAGAGGGATTTGAAA+GGG | 0.537945 | 1_1:-8850136 | Msa0006090:three_prime_UTR |
| AACTTTGCATGTCAGAAGCA+AGG | 0.539901 | 1_1:+8852914 | None:intergenic |
| CATAAAGGCTTAACAATCCA+AGG | 0.539921 | 1_1:+8854226 | None:intergenic |
| AAATGACTAGTAGACTAAAG+TGG | 0.544535 | 1_1:-8850649 | Msa0006090:CDS |
| TGAAAACCTTCATCTTGTGT+TGG | 0.550037 | 1_1:-8853031 | Msa0006090:CDS |
| AAATGATTACAATCCTTGAA+AGG | 0.553671 | 1_1:-8854655 | Msa0006090:five_prime_UTR |
| CTAATGTCAATTGATAATGC+TGG | 0.554898 | 1_1:-8850560 | Msa0006090:CDS |
| TTAGCATAAACTTATGAAGG+TGG | 0.555147 | 1_1:-8850054 | Msa0006090:three_prime_UTR |
| AATGAAGAAAGAAAGTCAAA+GGG | 0.555190 | 1_1:-8854466 | Msa0006090:CDS |
| TGTTAGGGCAAATAGAGAGA+AGG | 0.559335 | 1_1:-8850178 | Msa0006090:three_prime_UTR |
| CTTCTTTCATCATCATGGGG+TGG | 0.567293 | 1_1:-8850536 | Msa0006090:CDS |
| TGGATTGTTAAGCCTTTATG+GGG | 0.567662 | 1_1:-8854223 | Msa0006090:CDS |
| GGACTTCTTTCATCATCATG+GGG | 0.573124 | 1_1:-8850539 | Msa0006090:CDS |
| ACAAAACTTCTCTTACAGAC+AGG | 0.574633 | 1_1:-8852627 | Msa0006090:intron |
| ACTTTGCATGTCAGAAGCAA+GGG | 0.576270 | 1_1:+8852915 | None:intergenic |
| AAACTTTGTGGATGCCGGCA+AGG | 0.577788 | 1_1:-8852340 | Msa0006090:CDS |
| GATATTCAAACTCAGTGCAA+AGG | 0.582025 | 1_1:+8852257 | None:intergenic |
| GCATAAACCTGTGCTTCAGA+AGG | 0.585483 | 1_1:+8854265 | None:intergenic |
| TTATTGGTATACAGACTCAA+AGG | 0.588010 | 1_1:-8852220 | Msa0006090:CDS |
| GGAATAAGTCAAGGTTTAGG+TGG | 0.592318 | 1_1:-8854343 | Msa0006090:CDS |
| ATGGAAAGATAACAAAAGCA+TGG | 0.598685 | 1_1:+8853053 | None:intergenic |
| AACAGCAGGGAGTGCTGGAG+TGG | 0.601674 | 1_1:-8852995 | Msa0006090:CDS |
| GGATGGCCCATCTTTCTCAC+AGG | 0.602106 | 1_1:-8852199 | Msa0006090:intron |
| AATGTTCCTTCAATACCAGA+TGG | 0.602463 | 1_1:+8850593 | None:intergenic |
| TAATATCAGAGGGATTTGAA+AGG | 0.603270 | 1_1:-8850137 | Msa0006090:three_prime_UTR |
| TAGCTCCATGTAATATCAGA+GGG | 0.606208 | 1_1:-8850147 | Msa0006090:three_prime_UTR |
| AAAGAGTTAGGATCAACTCT+AGG | 0.610731 | 1_1:+8850398 | None:intergenic |
| TGGTATACAGACTCAAAGGA+TGG | 0.620432 | 1_1:-8852216 | Msa0006090:CDS |
| TTAGCTCCATGTAATATCAG+AGG | 0.624134 | 1_1:-8850148 | Msa0006090:three_prime_UTR |
| AGAAAATGTGGATTCAAAGG+TGG | 0.627950 | 1_1:-8850360 | Msa0006090:CDS |
| TTTGAGCTGAGTACAAGCAT+AGG | 0.628993 | 1_1:+8850623 | None:intergenic |
| AGTTGCTCTATGGTCTATCA+GGG | 0.638082 | 1_1:-8850760 | Msa0006090:CDS |
| TATTGACACTTCAGAAACCA+AGG | 0.638956 | 1_1:-8850333 | Msa0006090:CDS |
| TGGATGCCGGCAAGGCTATG+TGG | 0.641291 | 1_1:-8852332 | Msa0006090:CDS |
| TGAAGAATCAAGATGTATGG+AGG | 0.648173 | 1_1:-8852302 | Msa0006090:CDS |
| TGCATGTCAGAAGCAAGGGA+AGG | 0.650191 | 1_1:+8852919 | None:intergenic |
| GATAAGTACATGTATAGACA+AGG | 0.690907 | 1_1:+8852279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTGAAGTTAATTTTA+TGG | + | chr1_1:8849982-8850001 | None:intergenic | 10.0% |
| !!! | TATTTCAATATTTTTTTGTT+AGG | - | chr1_1:8854535-8854554 | Msa0006090:exon | 10.0% |
| !!! | ATTTCAATATTTTTTTGTTA+GGG | - | chr1_1:8854536-8854555 | Msa0006090:exon | 10.0% |
| !!! | TTGTTATACTTGTTATTTTT+TGG | + | chr1_1:8850193-8850212 | None:intergenic | 15.0% |
| !! | TTGATGTTTATCAAATTAAA+AGG | - | chr1_1:8850704-8850723 | Msa0006090:CDS | 15.0% |
| !!! | GTATGATATTTTTTACTTTT+TGG | - | chr1_1:8853274-8853293 | Msa0006090:intron | 15.0% |
| !!! | TTTTAAAAAATTACTAAGCA+TGG | + | chr1_1:8853699-8853718 | None:intergenic | 15.0% |
| !! | TAGCAATAGTTTATATAATT+TGG | - | chr1_1:8853724-8853743 | Msa0006090:intron | 15.0% |
| !!! | TTAATTTGATAAACATCAAG+AGG | + | chr1_1:8850703-8850722 | None:intergenic | 20.0% |
| !! | AAGCTCGATATATTAAAATT+CGG | - | chr1_1:8850786-8850805 | Msa0006090:CDS | 20.0% |
| !! | ATTATATGTGTTTCTTATAG+TGG | - | chr1_1:8851514-8851533 | Msa0006090:intron | 20.0% |
| !!! | TGATAGATTTTTTTTCTCAT+AGG | - | chr1_1:8852006-8852025 | Msa0006090:intron | 20.0% |
| !!! | GATAGATTTTTTTTCTCATA+GGG | - | chr1_1:8852007-8852026 | Msa0006090:intron | 20.0% |
| !!! | ATAGATTTTTTTTCTCATAG+GGG | - | chr1_1:8852008-8852027 | Msa0006090:intron | 20.0% |
| !! | ATATTTATAGATAAGTTCAC+TGG | - | chr1_1:8853192-8853211 | Msa0006090:intron | 20.0% |
| !! | ATTAGGGAAGTTAAAAATTA+AGG | - | chr1_1:8853325-8853344 | Msa0006090:intron | 20.0% |
| !! | TATAGCATCATATATATTTG+TGG | - | chr1_1:8853430-8853449 | Msa0006090:intron | 20.0% |
| !!! | AAAGTTTTTTCATTCAACTA+GGG | + | chr1_1:8853750-8853769 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTTTCATTCAACT+AGG | + | chr1_1:8853751-8853770 | None:intergenic | 20.0% |
| !!! | TATTGAAATAAATATTGGCT+TGG | + | chr1_1:8854525-8854544 | None:intergenic | 20.0% |
| !!! | ATTTTGCTTGTATAAGATTT+TGG | + | chr1_1:8854738-8854757 | None:intergenic | 20.0% |
| ! | AAATGATTACAATCCTTGAA+AGG | - | chr1_1:8850074-8850093 | Msa0006090:three_prime_UTR | 25.0% |
| ! | AAATGAAGAAAGAAAGTCAA+AGG | - | chr1_1:8850262-8850281 | Msa0006090:intron | 25.0% |
| ! | AATGAAGAAAGAAAGTCAAA+GGG | - | chr1_1:8850263-8850282 | Msa0006090:intron | 25.0% |
| !! | AAATGAAGTAAGGTTTTCTA+CGG | + | chr1_1:8850565-8850584 | None:intergenic | 25.0% |
| ! | AGCTCGATATATTAAAATTC+GGG | - | chr1_1:8850787-8850806 | Msa0006090:CDS | 25.0% |
| ! | TAAGTTAATCTGGCATTAAT+CGG | - | chr1_1:8850817-8850836 | Msa0006090:CDS | 25.0% |
| ! | CTGAAAAAATGGTTATAAGA+GGG | + | chr1_1:8850866-8850885 | None:intergenic | 25.0% |
| ! | CTTAACACAATAGTAATTGA+TGG | - | chr1_1:8850911-8850930 | Msa0006090:intron | 25.0% |
| ! | GTAAACAAATTAGGATCTAA+GGG | - | chr1_1:8851170-8851189 | Msa0006090:intron | 25.0% |
| ! | TAAACAAATTAGGATCTAAG+GGG | - | chr1_1:8851171-8851190 | Msa0006090:intron | 25.0% |
| ! | TTTATCTGAATGCTGAAAAT+GGG | - | chr1_1:8851204-8851223 | Msa0006090:intron | 25.0% |
| !! | TGAAAAACTTTGCAAGTTTT+AGG | + | chr1_1:8851947-8851966 | None:intergenic | 25.0% |
| !!! | TAGATTTTTTTTCTCATAGG+GGG | - | chr1_1:8852009-8852028 | Msa0006090:intron | 25.0% |
| !!! | TAAGAGAAGTTTTGTATATG+AGG | + | chr1_1:8852097-8852116 | None:intergenic | 25.0% |
| ! | ATAAGCACGTAATACTTATA+TGG | + | chr1_1:8852306-8852325 | None:intergenic | 25.0% |
| ! | ATATAAGTATTACGTGCTTA+TGG | - | chr1_1:8852305-8852324 | Msa0006090:CDS | 25.0% |
| !! | TCAGATTAGGTGTTATATTA+GGG | + | chr1_1:8852345-8852364 | None:intergenic | 25.0% |
| !! | ATCAGATTAGGTGTTATATT+AGG | + | chr1_1:8852346-8852365 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAAATCAGATT+AGG | + | chr1_1:8852358-8852377 | None:intergenic | 25.0% |
| !!! | ATCTGATTTTTTCATTCTCT+AGG | - | chr1_1:8852359-8852378 | Msa0006090:intron | 25.0% |
| ! | GAATTTCATGAAGTTTAGAT+TGG | + | chr1_1:8852675-8852694 | None:intergenic | 25.0% |
| ! | TCATGAATACAAAAGACATT+TGG | + | chr1_1:8852912-8852931 | None:intergenic | 25.0% |
| ! | TCTGATTACTCTTCTAATTT+AGG | - | chr1_1:8852946-8852965 | Msa0006090:CDS | 25.0% |
| !!! | TGGTTTTATAATGTTGAGTT+AGG | + | chr1_1:8852979-8852998 | None:intergenic | 25.0% |
| !! | AATCTTTTCACCAAAAGTTA+AGG | - | chr1_1:8853245-8853264 | Msa0006090:intron | 25.0% |
| !! | ATCTTTTCACCAAAAGTTAA+GGG | - | chr1_1:8853246-8853265 | Msa0006090:intron | 25.0% |
| ! | TGTACTTAGAAGAAAACATT+AGG | - | chr1_1:8853308-8853327 | Msa0006090:intron | 25.0% |
| ! | GTACTTAGAAGAAAACATTA+GGG | - | chr1_1:8853309-8853328 | Msa0006090:intron | 25.0% |
| ! | GTTAAAAATTAAGGAATCCA+AGG | - | chr1_1:8853334-8853353 | Msa0006090:intron | 25.0% |
| !! | TAACATCTTATTTATCCTTG+AGG | + | chr1_1:8853497-8853516 | None:intergenic | 25.0% |
| ! | GTATAATATTGCTCCTAAAA+GGG | + | chr1_1:8853900-8853919 | None:intergenic | 25.0% |
| ! | AAGATTATCAAACTTTGTTC+TGG | + | chr1_1:8854248-8854267 | None:intergenic | 25.0% |
| !! | GAACAAAGTTTGATAATCTT+TGG | - | chr1_1:8854248-8854267 | Msa0006090:CDS | 25.0% |
| !! | TTTGAATCCACATTTTCTTT+TGG | + | chr1_1:8854367-8854386 | None:intergenic | 25.0% |
| ! | AAAAGAAAATGTGGATTCAA+AGG | - | chr1_1:8854366-8854385 | Msa0006090:CDS | 25.0% |
| ! | AGTTTAGCATAAACTTATGA+AGG | - | chr1_1:8854672-8854691 | Msa0006090:five_prime_UTR | 25.0% |
| AATCTAGTACTAACCTTTCA+AGG | + | chr1_1:8850090-8850109 | None:intergenic | 30.0% | |
| !!! | TCATTTTTTTGCTCAGATTC+TGG | + | chr1_1:8850248-8850267 | None:intergenic | 30.0% |
| ! | AGCATTTTAAACCATTCACT+TGG | + | chr1_1:8850317-8850336 | None:intergenic | 30.0% |
| !!! | ATGCATTGGAGTTTTGTTTT+TGG | - | chr1_1:8850347-8850366 | Msa0006090:CDS | 30.0% |
| !! | TTTGGAGTAGTTGTTGTTTA+TGG | - | chr1_1:8850365-8850384 | Msa0006090:CDS | 30.0% |
| GTTGTTTATGGAATAAGTCA+AGG | - | chr1_1:8850377-8850396 | Msa0006090:CDS | 30.0% | |
| TATGGAATAAGTCAAGGTTT+AGG | - | chr1_1:8850383-8850402 | Msa0006090:CDS | 30.0% | |
| TTGGATTGTTAAGCCTTTAT+GGG | - | chr1_1:8850505-8850524 | Msa0006090:CDS | 30.0% | |
| ! | ACTGATGTTCTTCCTATTTT+TGG | - | chr1_1:8850536-8850555 | Msa0006090:CDS | 30.0% |
| TTTCTACGGTATCCAAAAAT+AGG | + | chr1_1:8850551-8850570 | None:intergenic | 30.0% | |
| !! | AAACCTTACTTCATTTTTGC+TGG | - | chr1_1:8850569-8850588 | Msa0006090:CDS | 30.0% |
| ATACCAGCAAAAATGAAGTA+AGG | + | chr1_1:8850575-8850594 | None:intergenic | 30.0% | |
| ! | TTTCTGATCTTTGTTCTAGA+TGG | - | chr1_1:8850605-8850624 | Msa0006090:CDS | 30.0% |
| ! | TTCTGATCTTTGTTCTAGAT+GGG | - | chr1_1:8850606-8850625 | Msa0006090:CDS | 30.0% |
| AGAGGTTCACAACTTATAAA+GGG | + | chr1_1:8850685-8850704 | None:intergenic | 30.0% | |
| AAGAGGTTCACAACTTATAA+AGG | + | chr1_1:8850686-8850705 | None:intergenic | 30.0% | |
| CGATATATTAAAATTCGGGT+TGG | - | chr1_1:8850791-8850810 | Msa0006090:CDS | 30.0% | |
| GATTAATGCCAGATTAACTT+AGG | + | chr1_1:8850818-8850837 | None:intergenic | 30.0% | |
| AAGTTAATCTGGCATTAATC+GGG | - | chr1_1:8850818-8850837 | Msa0006090:CDS | 30.0% | |
| CCTGAAAAAATGGTTATAAG+AGG | + | chr1_1:8850867-8850886 | None:intergenic | 30.0% | |
| !!! | CCTCTTATAACCATTTTTTC+AGG | - | chr1_1:8850864-8850883 | Msa0006090:CDS | 30.0% |
| TAAGATGTGACCTGAAAAAA+TGG | + | chr1_1:8850877-8850896 | None:intergenic | 30.0% | |
| TCATTTGCACTTAGATACTA+TGG | - | chr1_1:8850943-8850962 | Msa0006090:intron | 30.0% | |
| CATTTGCACTTAGATACTAT+GGG | - | chr1_1:8850944-8850963 | Msa0006090:intron | 30.0% | |
| ! | TTAGTCAAAGGGTTTAAAAC+CGG | - | chr1_1:8850978-8850997 | Msa0006090:intron | 30.0% |
| ! | AAAAGTAATAGTACTGAGCA+GGG | + | chr1_1:8851124-8851143 | None:intergenic | 30.0% |
| GGTAAACAAATTAGGATCTA+AGG | - | chr1_1:8851169-8851188 | Msa0006090:intron | 30.0% | |
| AAACAAATTAGGATCTAAGG+GGG | - | chr1_1:8851172-8851191 | Msa0006090:intron | 30.0% | |
| GTTTATCTGAATGCTGAAAA+TGG | - | chr1_1:8851203-8851222 | Msa0006090:intron | 30.0% | |
| TTATCTGAATGCTGAAAATG+GGG | - | chr1_1:8851205-8851224 | Msa0006090:intron | 30.0% | |
| TTATTCAGTACACTTGTTCT+AGG | - | chr1_1:8851276-8851295 | Msa0006090:intron | 30.0% | |
| ATCTCTTCATCAATTCTTGT+AGG | + | chr1_1:8851579-8851598 | None:intergenic | 30.0% | |
| AGACTACTATATTAGTGAAG+CGG | + | chr1_1:8851609-8851628 | None:intergenic | 30.0% | |
| ATGGAAAGATAACAAAAGCA+TGG | + | chr1_1:8851679-8851698 | None:intergenic | 30.0% | |
| CTATTAGGATTCTCTATTAG+TGG | - | chr1_1:8851867-8851886 | Msa0006090:intron | 30.0% | |
| GGAAGAAAAGAAAAATCAAG+AGG | + | chr1_1:8851926-8851945 | None:intergenic | 30.0% | |
| ! | TCTTTCTATTTTCCTCTGAT+CGG | - | chr1_1:8852181-8852200 | Msa0006090:intron | 30.0% |
| GTGATTTCACAATGTCAATA+TGG | + | chr1_1:8852265-8852284 | None:intergenic | 30.0% | |
| TGCTTATGGTAAAATTTCCA+TGG | - | chr1_1:8852319-8852338 | Msa0006090:CDS | 30.0% | |
| CATTGAAGAATCAAGATGTA+TGG | - | chr1_1:8852424-8852443 | Msa0006090:intron | 30.0% | |
| GATAAGTACATGTATAGACA+AGG | + | chr1_1:8852453-8852472 | None:intergenic | 30.0% | |
| ! | TCCTTGAAGGAATGTTTTAT+TGG | - | chr1_1:8852493-8852512 | Msa0006090:intron | 30.0% |
| ACCAATAAAACATTCCTTCA+AGG | + | chr1_1:8852497-8852516 | None:intergenic | 30.0% | |
| TTATTGGTATACAGACTCAA+AGG | - | chr1_1:8852509-8852528 | Msa0006090:intron | 30.0% | |
| TTTCTCACAGGTATTTGATT+AGG | - | chr1_1:8852542-8852561 | Msa0006090:intron | 30.0% | |
| ! | TTCTCTATGCTCTCTTTTTA+AGG | + | chr1_1:8852875-8852894 | None:intergenic | 30.0% |
| ACTCTTCTAATTTAGGCTTA+AGG | - | chr1_1:8852953-8852972 | Msa0006090:CDS | 30.0% | |
| TAAAACCAACTTGTAAAGTG+AGG | - | chr1_1:8852991-8853010 | Msa0006090:CDS | 30.0% | |
| AAAACCAACTTGTAAAGTGA+GGG | - | chr1_1:8852992-8853011 | Msa0006090:CDS | 30.0% | |
| ! | ACAAATGTTGATGGAATAAC+AGG | - | chr1_1:8853096-8853115 | Msa0006090:intron | 30.0% |
| ! | CAAATGTTGATGGAATAACA+GGG | - | chr1_1:8853097-8853116 | Msa0006090:intron | 30.0% |
| GATGTTAAATCCTTGTGATT+AGG | - | chr1_1:8853510-8853529 | Msa0006090:intron | 30.0% | |
| ! | TTTGAGACTGTTTGAGAATT+GGG | - | chr1_1:8853580-8853599 | Msa0006090:intron | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr1_1:8853635-8853654 | None:intergenic | 30.0% | |
| ! | ATATTTTCAATCAGCTCAGT+CGG | - | chr1_1:8853872-8853891 | Msa0006090:intron | 30.0% |
| GGTATAATATTGCTCCTAAA+AGG | + | chr1_1:8853901-8853920 | None:intergenic | 30.0% | |
| ATTATACCAATACGCTCTAA+AGG | - | chr1_1:8853913-8853932 | Msa0006090:intron | 30.0% | |
| ATGAGATTGAACCTAAAGTT+TGG | - | chr1_1:8854013-8854032 | Msa0006090:intron | 30.0% | |
| AAATGACTAGTAGACTAAAG+TGG | - | chr1_1:8854080-8854099 | Msa0006090:intron | 30.0% | |
| !! | CTAATGTCAATTGATAATGC+TGG | - | chr1_1:8854169-8854188 | Msa0006090:CDS | 30.0% |
| !!! | TTTGGTTAGCGATTTTGATT+CGG | - | chr1_1:8854266-8854285 | Msa0006090:CDS | 30.0% |
| TCTTCTTCCAAAAGAAAATG+TGG | - | chr1_1:8854357-8854376 | Msa0006090:CDS | 30.0% | |
| ACAAAAGAATGTATCTTCTC+TGG | + | chr1_1:8854473-8854492 | None:intergenic | 30.0% | |
| GTATTCTGTATTTCATAGAC+AGG | - | chr1_1:8854491-8854510 | Msa0006090:CDS | 30.0% | |
| TAATATCAGAGGGATTTGAA+AGG | - | chr1_1:8854592-8854611 | Msa0006090:five_prime_UTR | 30.0% | |
| AATATCAGAGGGATTTGAAA+GGG | - | chr1_1:8854593-8854612 | Msa0006090:five_prime_UTR | 30.0% | |
| TTAGCATAAACTTATGAAGG+TGG | - | chr1_1:8854675-8854694 | Msa0006090:five_prime_UTR | 30.0% | |
| TAAACTTATGAAGGTGGAAA+AGG | - | chr1_1:8854681-8854700 | Msa0006090:five_prime_UTR | 30.0% | |
| !! | AGTCAAAGGGTGTTAGAATA+TGG | - | chr1_1:8850276-8850295 | Msa0006090:intron | 35.0% |
| ! | GTTTTTGCATTCCAAGTGAA+TGG | - | chr1_1:8850303-8850322 | Msa0006090:CDS | 35.0% |
| TGCTATCAAGAGAAATGCAT+TGG | - | chr1_1:8850333-8850352 | Msa0006090:CDS | 35.0% | |
| CTGGAATTACATCTATTCCT+TGG | - | chr1_1:8850486-8850505 | Msa0006090:CDS | 35.0% | |
| CATAAAGGCTTAACAATCCA+AGG | + | chr1_1:8850506-8850525 | None:intergenic | 35.0% | |
| CTTGGATTGTTAAGCCTTTA+TGG | - | chr1_1:8850504-8850523 | Msa0006090:CDS | 35.0% | |
| TGGATTGTTAAGCCTTTATG+GGG | - | chr1_1:8850506-8850525 | Msa0006090:CDS | 35.0% | |
| ! | AGTTTAGTGACTTGTAAGAG+CGG | - | chr1_1:8850751-8850770 | Msa0006090:CDS | 35.0% |
| ACTTGTAAGAGCGGTTTATA+GGG | - | chr1_1:8850760-8850779 | Msa0006090:CDS | 35.0% | |
| ACTTAGATACTATGGGAGAT+TGG | - | chr1_1:8850951-8850970 | Msa0006090:intron | 35.0% | |
| AGATTGGACTCTTAGTCAAA+GGG | - | chr1_1:8850967-8850986 | Msa0006090:intron | 35.0% | |
| !! | CAAGGGTTTTGATATCTACT+AGG | - | chr1_1:8851029-8851048 | Msa0006090:intron | 35.0% |
| ! | TTTTGATATCTACTAGGCCA+CGG | - | chr1_1:8851035-8851054 | Msa0006090:intron | 35.0% |
| CAATACGAAGAACTAAGACA+TGG | - | chr1_1:8851085-8851104 | Msa0006090:intron | 35.0% | |
| ! | CAAAAGTAATAGTACTGAGC+AGG | + | chr1_1:8851125-8851144 | None:intergenic | 35.0% |
| ! | CTGCTCAGTACTATTACTTT+TGG | - | chr1_1:8851123-8851142 | Msa0006090:intron | 35.0% |
| CCATTGTTCCATAACATCTT+GGG | + | chr1_1:8851250-8851269 | None:intergenic | 35.0% | |
| ACCATTGTTCCATAACATCT+TGG | + | chr1_1:8851251-8851270 | None:intergenic | 35.0% | |
| ATGTCTCAATGATTGCAATG+AGG | + | chr1_1:8851334-8851353 | None:intergenic | 35.0% | |
| CTTAGATCGCAAGGATATAA+GGG | - | chr1_1:8851374-8851393 | Msa0006090:intron | 35.0% | |
| TTTCATGAGACAACCTTAGA+AGG | - | chr1_1:8851470-8851489 | Msa0006090:intron | 35.0% | |
| TTCATGAGACAACCTTAGAA+GGG | - | chr1_1:8851471-8851490 | Msa0006090:intron | 35.0% | |
| TCTCGTTTATAACCCTTCTA+AGG | + | chr1_1:8851486-8851505 | None:intergenic | 35.0% | |
| TAGAAGGGTTATAAACGAGA+AGG | - | chr1_1:8851486-8851505 | Msa0006090:intron | 35.0% | |
| !! | TGTGTTTCTTATAGTGGATG+TGG | - | chr1_1:8851520-8851539 | Msa0006090:intron | 35.0% |
| ! | GAATTTTTGTCGCTCATTGA+TGG | - | chr1_1:8851629-8851648 | Msa0006090:intron | 35.0% |
| ! | TTGATGGTTGCAGGTTTATT+AGG | - | chr1_1:8851645-8851664 | Msa0006090:intron | 35.0% |
| ! | ACACAAGATGAAGGTTTTCA+TGG | + | chr1_1:8851698-8851717 | None:intergenic | 35.0% |
| TGAAAACCTTCATCTTGTGT+TGG | - | chr1_1:8851698-8851717 | Msa0006090:intron | 35.0% | |
| AAATTGCCAACACAAGATGA+AGG | + | chr1_1:8851707-8851726 | None:intergenic | 35.0% | |
| !! | TCATCTTGTGTTGGCAATTT+TGG | - | chr1_1:8851707-8851726 | Msa0006090:intron | 35.0% |
| !! | TGTGCCTTTAGTTCTTCTAT+TGG | - | chr1_1:8851840-8851859 | Msa0006090:intron | 35.0% |
| TGCACCAATAGAAGAACTAA+AGG | + | chr1_1:8851847-8851866 | None:intergenic | 35.0% | |
| TCTTCTATTGGTGCACTATT+AGG | - | chr1_1:8851852-8851871 | Msa0006090:intron | 35.0% | |
| AAATCAAGAGGCTAACCATA+GGG | + | chr1_1:8851914-8851933 | None:intergenic | 35.0% | |
| AAAATCAAGAGGCTAACCAT+AGG | + | chr1_1:8851915-8851934 | None:intergenic | 35.0% | |
| ! | TCCAGCTGGACTTATAATTT+TGG | - | chr1_1:8852051-8852070 | Msa0006090:intron | 35.0% |
| ACCAAAATTATAAGTCCAGC+TGG | + | chr1_1:8852055-8852074 | None:intergenic | 35.0% | |
| !! | GCTGGACTTATAATTTTGGT+CGG | - | chr1_1:8852055-8852074 | Msa0006090:intron | 35.0% |
| ACAAAACTTCTCTTACAGAC+AGG | - | chr1_1:8852102-8852121 | Msa0006090:intron | 35.0% | |
| ATTCTCAGAAACATCGTAGT+AGG | - | chr1_1:8852221-8852240 | Msa0006090:CDS | 35.0% | |
| TGAAGAATCAAGATGTATGG+AGG | - | chr1_1:8852427-8852446 | Msa0006090:intron | 35.0% | |
| GATATTCAAACTCAGTGCAA+AGG | + | chr1_1:8852475-8852494 | None:intergenic | 35.0% | |
| CTGAGTTTGAATATCCTTGA+AGG | - | chr1_1:8852480-8852499 | Msa0006090:intron | 35.0% | |
| CAAATACCTGTGAGAAAGAT+GGG | + | chr1_1:8852539-8852558 | None:intergenic | 35.0% | |
| TCAAATACCTGTGAGAAAGA+TGG | + | chr1_1:8852540-8852559 | None:intergenic | 35.0% | |
| GCATTTCATCTTCCCTTATA+TGG | - | chr1_1:8852604-8852623 | Msa0006090:intron | 35.0% | |
| TGAAATTCTCATGTCTACTG+TGG | - | chr1_1:8852687-8852706 | Msa0006090:CDS | 35.0% | |
| GTCTTGCATCAAATGATAGA+AGG | + | chr1_1:8852725-8852744 | None:intergenic | 35.0% | |
| TTTGCATCAAGTGAGTTAGA+AGG | - | chr1_1:8852791-8852810 | Msa0006090:intron | 35.0% | |
| ! | TTGACTCGAAATAAAGCTCT+CGG | + | chr1_1:8852840-8852859 | None:intergenic | 35.0% |
| ! | AGGGATTTTACTTATAGCAG+TGG | - | chr1_1:8853116-8853135 | Msa0006090:intron | 35.0% |
| ! | GATTTTACTTATAGCAGTGG+CGG | - | chr1_1:8853119-8853138 | Msa0006090:intron | 35.0% |
| TAGATAAGTTCACTGGAACT+TGG | - | chr1_1:8853199-8853218 | Msa0006090:intron | 35.0% | |
| ! | ATACTCGAACCCTTAACTTT+TGG | + | chr1_1:8853258-8853277 | None:intergenic | 35.0% |
| ! | TCATTTGTACTTTTGCCAAG+TGG | + | chr1_1:8853400-8853419 | None:intergenic | 35.0% |
| ATATATATTTGTGGCTGCCA+TGG | - | chr1_1:8853439-8853458 | Msa0006090:intron | 35.0% | |
| CTTATTTATCCTTGAGGTAG+AGG | + | chr1_1:8853491-8853510 | None:intergenic | 35.0% | |
| CAAAAAGACTCCTAATCACA+AGG | + | chr1_1:8853523-8853542 | None:intergenic | 35.0% | |
| ! | CTTGTGATTAGGAGTCTTTT+TGG | - | chr1_1:8853521-8853540 | Msa0006090:intron | 35.0% |
| !! | CTTTGAGACTGTTTGAGAAT+TGG | - | chr1_1:8853579-8853598 | Msa0006090:intron | 35.0% |
| TTCAATAAGCTCTCCATGAT+AGG | - | chr1_1:8853654-8853673 | Msa0006090:intron | 35.0% | |
| AAATGCAAGACAAAGGTTAC+TGG | + | chr1_1:8853827-8853846 | None:intergenic | 35.0% | |
| TGGAAGAAAATGCAAGACAA+AGG | + | chr1_1:8853834-8853853 | None:intergenic | 35.0% | |
| ! | TTTCTTCCACAGGAAAGTAT+AGG | - | chr1_1:8853845-8853864 | Msa0006090:intron | 35.0% |
| ATGAAACCTATACTTTCCTG+TGG | + | chr1_1:8853854-8853873 | None:intergenic | 35.0% | |
| ! | CATTCAGAGACTTACTCTTT+TGG | - | chr1_1:8853942-8853961 | Msa0006090:intron | 35.0% |
| GAACCTAAAGTTTGGTATAC+CGG | - | chr1_1:8854021-8854040 | Msa0006090:intron | 35.0% | |
| AATCCGGTATACCAAACTTT+AGG | + | chr1_1:8854027-8854046 | None:intergenic | 35.0% | |
| ATCACAACAAAGACGTAATC+CGG | + | chr1_1:8854043-8854062 | None:intergenic | 35.0% | |
| AATGTTCCTTCAATACCAGA+TGG | + | chr1_1:8854139-8854158 | None:intergenic | 35.0% | |
| TGGACTTCTTTCATCATCAT+GGG | - | chr1_1:8854189-8854208 | Msa0006090:CDS | 35.0% | |
| ACTAAAAACAGCATGCAAAG+TGG | + | chr1_1:8854310-8854329 | None:intergenic | 35.0% | |
| AAAGAGTTAGGATCAACTCT+AGG | + | chr1_1:8854334-8854353 | None:intergenic | 35.0% | |
| GGAAGAAGAATGAAAGAGTT+AGG | + | chr1_1:8854346-8854365 | None:intergenic | 35.0% | |
| AGAAAATGTGGATTCAAAGG+TGG | - | chr1_1:8854369-8854388 | Msa0006090:CDS | 35.0% | |
| TATTGACACTTCAGAAACCA+AGG | - | chr1_1:8854396-8854415 | Msa0006090:CDS | 35.0% | |
| AGAAACCAAGGATGTTGAAT+TGG | - | chr1_1:8854408-8854427 | Msa0006090:CDS | 35.0% | |
| TTAGCTCCATGTAATATCAG+AGG | - | chr1_1:8854581-8854600 | Msa0006090:five_prime_UTR | 35.0% | |
| TAGCTCCATGTAATATCAGA+GGG | - | chr1_1:8854582-8854601 | Msa0006090:five_prime_UTR | 35.0% | |
| CAAATCCCTCTGATATTACA+TGG | + | chr1_1:8854590-8854609 | None:intergenic | 35.0% | |
| GGAATAAGTCAAGGTTTAGG+TGG | - | chr1_1:8850386-8850405 | Msa0006090:CDS | 40.0% | |
| TCAGTAAGAAGACCCCATAA+AGG | + | chr1_1:8850521-8850540 | None:intergenic | 40.0% | |
| GACTTGTAAGAGCGGTTTAT+AGG | - | chr1_1:8850759-8850778 | Msa0006090:CDS | 40.0% | |
| ! | GGCATTAATCGGGTTGTATA+TGG | - | chr1_1:8850828-8850847 | Msa0006090:CDS | 40.0% |
| ! | AATCGGGTTGTATATGGTGA+TGG | - | chr1_1:8850834-8850853 | Msa0006090:CDS | 40.0% |
| GAGATTGGACTCTTAGTCAA+AGG | - | chr1_1:8850966-8850985 | Msa0006090:intron | 40.0% | |
| AAAACCGGTCTTTGAGCATT+TGG | - | chr1_1:8850993-8851012 | Msa0006090:intron | 40.0% | |
| AAACCGGTCTTTGAGCATTT+GGG | - | chr1_1:8850994-8851013 | Msa0006090:intron | 40.0% | |
| ! | ACTTTTGGCGCTTTTGCTTT+TGG | - | chr1_1:8851138-8851157 | Msa0006090:intron | 40.0% |
| !! | CTTTTGGCGCTTTTGCTTTT+GGG | - | chr1_1:8851139-8851158 | Msa0006090:intron | 40.0% |
| AATGGGGTCATTATCTCCTT+TGG | - | chr1_1:8851221-8851240 | Msa0006090:intron | 40.0% | |
| ATAACATCTTGGGAAGCCAA+AGG | + | chr1_1:8851240-8851259 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCCAAGATGTTA+TGG | - | chr1_1:8851239-8851258 | Msa0006090:intron | 40.0% |
| CCCAAGATGTTATGGAACAA+TGG | - | chr1_1:8851247-8851266 | Msa0006090:intron | 40.0% | |
| GTCAAATGTAGCTTCAGTTG+CGG | - | chr1_1:8851308-8851327 | Msa0006090:intron | 40.0% | |
| GCTTAGATCGCAAGGATATA+AGG | - | chr1_1:8851373-8851392 | Msa0006090:intron | 40.0% | |
| ATATAAGGGACACAGTCTCT+AGG | - | chr1_1:8851388-8851407 | Msa0006090:intron | 40.0% | |
| !!! | CAATTTTGGCCTTAACAGCA+GGG | - | chr1_1:8851721-8851740 | Msa0006090:intron | 40.0% |
| ACTTTGCATGTCAGAAGCAA+GGG | + | chr1_1:8851817-8851836 | None:intergenic | 40.0% | |
| AACTTTGCATGTCAGAAGCA+AGG | + | chr1_1:8851818-8851837 | None:intergenic | 40.0% | |
| GGCATCTTTGTTCACCTTAT+AGG | - | chr1_1:8851888-8851907 | Msa0006090:intron | 40.0% | |
| !!! | TTTTTCTCATAGGGGGTGTT+TGG | - | chr1_1:8852016-8852035 | Msa0006090:intron | 40.0% |
| ! | TAGGTGTTATATTAGGGCCA+TGG | + | chr1_1:8852339-8852358 | None:intergenic | 40.0% |
| TGGTATACAGACTCAAAGGA+TGG | - | chr1_1:8852513-8852532 | Msa0006090:intron | 40.0% | |
| TCTTCCCTTATATGGACAAG+TGG | - | chr1_1:8852612-8852631 | Msa0006090:intron | 40.0% | |
| TGCACCACTTGTCCATATAA+GGG | + | chr1_1:8852619-8852638 | None:intergenic | 40.0% | |
| TTGCACCACTTGTCCATATA+AGG | + | chr1_1:8852620-8852639 | None:intergenic | 40.0% | |
| AAGTGGTGCAATTGTTGTGA+AGG | - | chr1_1:8852629-8852648 | Msa0006090:CDS | 40.0% | |
| TGCAATTGTTGTGAAGGTAG+TGG | - | chr1_1:8852635-8852654 | Msa0006090:CDS | 40.0% | |
| GCAATTGTTGTGAAGGTAGT+GGG | - | chr1_1:8852636-8852655 | Msa0006090:CDS | 40.0% | |
| CTCTCGGAGTACATGTAAAT+GGG | + | chr1_1:8852824-8852843 | None:intergenic | 40.0% | |
| ATAGCCCTCACTTTACAAGT+TGG | + | chr1_1:8852999-8853018 | None:intergenic | 40.0% | |
| ! | ACTTTTGCCATATCTCGATG+TGG | - | chr1_1:8853035-8853054 | Msa0006090:CDS | 40.0% |
| ! | CTTTTGCCATATCTCGATGT+GGG | - | chr1_1:8853036-8853055 | Msa0006090:CDS | 40.0% |
| AGAACGTGGACAAATGTTGA+TGG | - | chr1_1:8853087-8853106 | Msa0006090:intron | 40.0% | |
| AGTTCACTGGAACTTGGTAT+TGG | - | chr1_1:8853205-8853224 | Msa0006090:intron | 40.0% | |
| ATTTATCCTTGAGGTAGAGG+CGG | + | chr1_1:8853488-8853507 | None:intergenic | 40.0% | |
| ! | TTGAGAATTGGGAGAGCATA+TGG | - | chr1_1:8853591-8853610 | Msa0006090:intron | 40.0% |
| ! | TGAGAATTGGGAGAGCATAT+GGG | - | chr1_1:8853592-8853611 | Msa0006090:intron | 40.0% |
| ! | TGTCTTGCATTTTCTTCCAC+AGG | - | chr1_1:8853835-8853854 | Msa0006090:intron | 40.0% |
| !! | CGTAATCCTTTAGAGCGTAT+TGG | + | chr1_1:8853922-8853941 | None:intergenic | 40.0% |
| ! | TTTTGGACTCAGTTGCTCTA+TGG | - | chr1_1:8853959-8853978 | Msa0006090:intron | 40.0% |
| AGTTGCTCTATGGTCTATCA+GGG | - | chr1_1:8853969-8853988 | Msa0006090:intron | 40.0% | |
| TTTGAGCTGAGTACAAGCAT+AGG | + | chr1_1:8854109-8854128 | None:intergenic | 40.0% | |
| ! | CTTTGTCCATCTGGTATTGA+AGG | - | chr1_1:8854130-8854149 | Msa0006090:intron | 40.0% |
| CTGGACTTCTTTCATCATCA+TGG | - | chr1_1:8854188-8854207 | Msa0006090:CDS | 40.0% | |
| GGACTTCTTTCATCATCATG+GGG | - | chr1_1:8854190-8854209 | Msa0006090:CDS | 40.0% | |
| AGACACCAATTCAACATCCT+TGG | + | chr1_1:8854416-8854435 | None:intergenic | 40.0% | |
| ! | TCTCTTGTACACAGTGTTGA+TGG | - | chr1_1:8854433-8854452 | Msa0006090:CDS | 40.0% |
| TGTTAGGGCAAATAGAGAGA+AGG | - | chr1_1:8854551-8854570 | Msa0006090:five_prime_UTR | 40.0% | |
| GTTAGGGCAAATAGAGAGAA+GGG | - | chr1_1:8854552-8854571 | Msa0006090:five_prime_UTR | 40.0% | |
| !! | AGTTCAACCTTCTGAAGCAC+AGG | - | chr1_1:8850457-8850476 | Msa0006090:CDS | 45.0% |
| GCATAAACCTGTGCTTCAGA+AGG | + | chr1_1:8850467-8850486 | None:intergenic | 45.0% | |
| ! | TCTGAAGCACAGGTTTATGC+TGG | - | chr1_1:8850467-8850486 | Msa0006090:CDS | 45.0% |
| GGGTTGGACCTAAGTTAATC+TGG | - | chr1_1:8850807-8850826 | Msa0006090:CDS | 45.0% | |
| CTGAGCAGGGTTTCAAATTG+CGG | + | chr1_1:8851111-8851130 | None:intergenic | 45.0% | |
| GTGGGTGGGGTAAACAAATT+AGG | - | chr1_1:8851161-8851180 | Msa0006090:intron | 45.0% | |
| !!! | GCAATTTTGGCCTTAACAGC+AGG | - | chr1_1:8851720-8851739 | Msa0006090:intron | 45.0% |
| CTGTGCAACACATGCATCAA+TGG | + | chr1_1:8851775-8851794 | None:intergenic | 45.0% | |
| TGTTCACCTTATAGGCCCTA+TGG | - | chr1_1:8851896-8851915 | Msa0006090:intron | 45.0% | |
| ! | GGTTTGATGACTATTCCAGC+TGG | - | chr1_1:8852037-8852056 | Msa0006090:intron | 45.0% |
| CTAGGTGCACCAAAACTTTG+TGG | - | chr1_1:8852377-8852396 | Msa0006090:intron | 45.0% | |
| CACCAAAACTTTGTGGATGC+CGG | - | chr1_1:8852384-8852403 | Msa0006090:intron | 45.0% | |
| !! | TTGTTGTGAAGGTAGTGGGT+TGG | - | chr1_1:8852640-8852659 | Msa0006090:CDS | 45.0% |
| GCTCTCGGAGTACATGTAAA+TGG | + | chr1_1:8852825-8852844 | None:intergenic | 45.0% | |
| TGAGATCCCACATCGAGATA+TGG | + | chr1_1:8853045-8853064 | None:intergenic | 45.0% | |
| CTCAACACACTCTCATGTTC+AGG | - | chr1_1:8853061-8853080 | Msa0006090:CDS | 45.0% | |
| TCATGTTCAGGACTAGAACG+TGG | - | chr1_1:8853073-8853092 | Msa0006090:CDS | 45.0% | |
| ATGGTAGAACAGCGACGATT+AGG | + | chr1_1:8853680-8853699 | None:intergenic | 45.0% | |
| CAGTTGCTCTATGGTCTATC+AGG | - | chr1_1:8853968-8853987 | Msa0006090:intron | 45.0% | |
| ! | AGCTCAAAGCTTTGTCCATC+TGG | - | chr1_1:8854121-8854140 | Msa0006090:intron | 45.0% |
| CTTCTTTCATCATCATGGGG+TGG | - | chr1_1:8854193-8854212 | Msa0006090:CDS | 45.0% | |
| !! | AAAAATATTGAAATAAATAT+TGG | + | chr1_1:8854530-8854549 | None:intergenic | 5.0% |
| CCACCCAAATGCTCAAAGAC+CGG | + | chr1_1:8851000-8851019 | None:intergenic | 50.0% | |
| TATCTACTAGGCCACGGTTC+AGG | - | chr1_1:8851041-8851060 | Msa0006090:intron | 50.0% | |
| !! | TTGGCGCTTTTGCTTTTGGG+TGG | - | chr1_1:8851142-8851161 | Msa0006090:intron | 50.0% |
| !! | TGGCGCTTTTGCTTTTGGGT+GGG | - | chr1_1:8851143-8851162 | Msa0006090:intron | 50.0% |
| !! | GCTTTTGCTTTTGGGTGGGT+GGG | - | chr1_1:8851147-8851166 | Msa0006090:intron | 50.0% |
| !! | CTTTTGCTTTTGGGTGGGTG+GGG | - | chr1_1:8851148-8851167 | Msa0006090:intron | 50.0% |
| CGATCTAAGCTGCGACATCA+AGG | + | chr1_1:8851363-8851382 | None:intergenic | 50.0% | |
| ATGTCGCAGCTTAGATCGCA+AGG | - | chr1_1:8851365-8851384 | Msa0006090:intron | 50.0% | |
| ! | TGTCGCTCATTGATGGTTGC+AGG | - | chr1_1:8851636-8851655 | Msa0006090:intron | 50.0% |
| GTCAGAAGCAAGGGAAGGAT+GGG | + | chr1_1:8851808-8851827 | None:intergenic | 50.0% | |
| TGTCAGAAGCAAGGGAAGGA+TGG | + | chr1_1:8851809-8851828 | None:intergenic | 50.0% | |
| TGCATGTCAGAAGCAAGGGA+AGG | + | chr1_1:8851813-8851832 | None:intergenic | 50.0% | |
| GGCTAACCATAGGGCCTATA+AGG | + | chr1_1:8851905-8851924 | None:intergenic | 50.0% | |
| CTTGTGCATGATCCGATCAG+AGG | + | chr1_1:8852196-8852215 | None:intergenic | 50.0% | |
| ! | TGCCGGCATCCACAAAGTTT+TGG | + | chr1_1:8852389-8852408 | None:intergenic | 50.0% |
| AAACTTTGTGGATGCCGGCA+AGG | - | chr1_1:8852389-8852408 | Msa0006090:intron | 50.0% | |
| ! | TGTAGTCCACATAGCCTTGC+CGG | + | chr1_1:8852406-8852425 | None:intergenic | 50.0% |
| AGGTATGCACGTTCGTACCT+TGG | + | chr1_1:8853354-8853373 | None:intergenic | 50.0% | |
| CGTGCATACCTCTGCTTAAC+AGG | - | chr1_1:8853363-8853382 | Msa0006090:intron | 50.0% | |
| TTTGCCAAGTGGCTATGCAC+AGG | + | chr1_1:8853389-8853408 | None:intergenic | 50.0% | |
| AGCGACGATTAGGCCTATCA+TGG | + | chr1_1:8853670-8853689 | None:intergenic | 50.0% | |
| !! | AGCTCAGTCGGTTCCCTTTT+AGG | - | chr1_1:8853884-8853903 | Msa0006090:intron | 50.0% |
| CTTTCATCATCATGGGGTGG+TGG | - | chr1_1:8854196-8854215 | Msa0006090:CDS | 50.0% | |
| GGTTTAGGTGGTGCTCTTGC+TGG | - | chr1_1:8850398-8850417 | Msa0006090:CDS | 55.0% | |
| CCGGTCTTTGAGCATTTGGG+TGG | - | chr1_1:8850997-8851016 | Msa0006090:intron | 55.0% | |
| TTTGGGTGGTCGCGACTTCA+AGG | - | chr1_1:8851011-8851030 | Msa0006090:intron | 55.0% | |
| TTGGGTGGTCGCGACTTCAA+GGG | - | chr1_1:8851012-8851031 | Msa0006090:intron | 55.0% | |
| GTCAAACGCAACCTGAACCG+TGG | + | chr1_1:8851055-8851074 | None:intergenic | 55.0% | |
| !! | CGCTTTTGCTTTTGGGTGGG+TGG | - | chr1_1:8851146-8851165 | Msa0006090:intron | 55.0% |
| TCCAGCACTCCCTGCTGTTA+AGG | + | chr1_1:8851733-8851752 | None:intergenic | 55.0% | |
| GGATGGCCCATCTTTCTCAC+AGG | - | chr1_1:8852530-8852549 | Msa0006090:intron | 55.0% | |
| TGCACAGGCCTGTTAAGCAG+AGG | + | chr1_1:8853374-8853393 | None:intergenic | 55.0% | |
| GGTGGTGCTCTTGCTGGTGT+TGG | - | chr1_1:8850404-8850423 | Msa0006090:CDS | 60.0% | |
| ! | GCCTTAACAGCAGGGAGTGC+TGG | - | chr1_1:8851729-8851748 | Msa0006090:intron | 60.0% |
| !! | AACAGCAGGGAGTGCTGGAG+TGG | - | chr1_1:8851734-8851753 | Msa0006090:intron | 60.0% |
| TGGATGCCGGCAAGGCTATG+TGG | - | chr1_1:8852397-8852416 | Msa0006090:intron | 60.0% | |
| CAGGCCTGTGCATAGCCACT+TGG | - | chr1_1:8853382-8853401 | Msa0006090:intron | 60.0% | |
| CTTGTGACAGGGGGATGCCA+TGG | + | chr1_1:8853459-8853478 | None:intergenic | 60.0% | |
| CATGGCATCCCCCTGTCACA+AGG | - | chr1_1:8853457-8853476 | Msa0006090:intron | 60.0% | |
| CGGAGCTTCCTTGTGACAGG+GGG | + | chr1_1:8853468-8853487 | None:intergenic | 60.0% | |
| GCGGAGCTTCCTTGTGACAG+GGG | + | chr1_1:8853469-8853488 | None:intergenic | 60.0% | |
| GGCGGAGCTTCCTTGTGACA+GGG | + | chr1_1:8853470-8853489 | None:intergenic | 60.0% | |
| AGGCGGAGCTTCCTTGTGAC+AGG | + | chr1_1:8853471-8853490 | None:intergenic | 60.0% | |
| GAAGCTCCGCCTCTACCTCA+AGG | - | chr1_1:8853479-8853498 | Msa0006090:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 8849974 | 8854777 | 8849974 | ID=Msa0006090;Name=Msa0006090 |
| chr1_1 | mRNA | 8849974 | 8854777 | 8849974 | ID=Msa0006090-mRNA-1;Parent=Msa0006090;Name=Msa0006090-mRNA-1;_AED=0.04;_eAED=0.04;_QI=238|1|1|1|0.8|0.66|6|278|504 |
| chr1_1 | exon | 8849974 | 8850249 | 8849974 | ID=Msa0006090-mRNA-1:exon:3140;Parent=Msa0006090-mRNA-1 |
| chr1_1 | exon | 8850284 | 8850894 | 8850284 | ID=Msa0006090-mRNA-1:exon:3139;Parent=Msa0006090-mRNA-1 |
| chr1_1 | exon | 8852200 | 8852370 | 8852200 | ID=Msa0006090-mRNA-1:exon:3138;Parent=Msa0006090-mRNA-1 |
| chr1_1 | exon | 8852628 | 8852723 | 8852628 | ID=Msa0006090-mRNA-1:exon:3137;Parent=Msa0006090-mRNA-1 |
| chr1_1 | exon | 8852834 | 8853093 | 8852834 | ID=Msa0006090-mRNA-1:exon:3136;Parent=Msa0006090-mRNA-1 |
| chr1_1 | exon | 8854161 | 8854777 | 8854161 | ID=Msa0006090-mRNA-1:exon:3135;Parent=Msa0006090-mRNA-1 |
| chr1_1 | five_prime_UTR | 8854540 | 8854777 | 8854540 | ID=Msa0006090-mRNA-1:five_prime_utr;Parent=Msa0006090-mRNA-1 |
| chr1_1 | CDS | 8854161 | 8854539 | 8854161 | ID=Msa0006090-mRNA-1:cds;Parent=Msa0006090-mRNA-1 |
| chr1_1 | CDS | 8852834 | 8853093 | 8852834 | ID=Msa0006090-mRNA-1:cds;Parent=Msa0006090-mRNA-1 |
| chr1_1 | CDS | 8852628 | 8852723 | 8852628 | ID=Msa0006090-mRNA-1:cds;Parent=Msa0006090-mRNA-1 |
| chr1_1 | CDS | 8852200 | 8852370 | 8852200 | ID=Msa0006090-mRNA-1:cds;Parent=Msa0006090-mRNA-1 |
| chr1_1 | CDS | 8850286 | 8850894 | 8850286 | ID=Msa0006090-mRNA-1:cds;Parent=Msa0006090-mRNA-1 |
| chr1_1 | three_prime_UTR | 8850284 | 8850285 | 8850284 | ID=Msa0006090-mRNA-1:three_prime_utr;Parent=Msa0006090-mRNA-1 |
| chr1_1 | three_prime_UTR | 8849974 | 8850249 | 8849974 | ID=Msa0006090-mRNA-1:three_prime_utr;Parent=Msa0006090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
