AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0045550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045550 MtrunA17_Chr1g0212701 99.185 491 4 0 2 492 906 1396 0.0 1001
Msa0045550 MtrunA17_Chr1g0212701 36.765 476 296 4 4 479 164 634 4.32e-90 300
Msa0045550 MtrunA17_Chr7g0222781 90.428 491 47 0 2 492 914 1404 0.0 919
Msa0045550 MtrunA17_Chr7g0222781 37.500 480 287 8 4 479 170 640 4.17e-89 297
Msa0045550 MtrunA17_Chr5g0410921 46.751 477 250 3 3 478 751 1224 2.10e-151 463
Msa0045550 MtrunA17_Chr5g0410921 34.969 489 315 3 1 488 115 601 3.15e-104 337
Msa0045550 MtrunA17_Chr6g0453051 45.625 480 259 2 1 479 766 1244 1.96e-146 450
Msa0045550 MtrunA17_Chr6g0453051 37.787 479 296 2 1 479 122 598 2.92e-109 351
Msa0045550 MtrunA17_Chr8g0366481 46.234 478 253 3 1 477 146 620 1.18e-141 421
Msa0045550 MtrunA17_Chr7g0264631 42.739 482 272 3 1 479 838 1318 8.53e-139 432
Msa0045550 MtrunA17_Chr7g0264631 43.451 481 268 3 1 479 185 663 2.04e-126 399
Msa0045550 MtrunA17_Chr1g0156821 43.096 478 270 2 2 478 753 1229 4.85e-130 407
Msa0045550 MtrunA17_Chr1g0156821 37.838 481 296 3 1 481 132 609 4.16e-93 307
Msa0045550 MtrunA17_Chr1g0180601 42.531 482 273 3 1 479 812 1292 7.34e-130 408
Msa0045550 MtrunA17_Chr1g0180601 44.008 484 261 5 1 479 158 636 2.55e-125 395
Msa0045550 MtrunA17_Chr3g0128381 38.272 486 292 2 2 479 149 634 1.55e-126 382
Msa0045550 MtrunA17_Chr3g0123411 40.452 487 283 4 1 481 662 1147 6.69e-125 391
Msa0045550 MtrunA17_Chr3g0123411 36.162 495 286 8 1 478 6 487 2.21e-93 306
Msa0045550 MtrunA17_Chr4g0041871 40.787 483 282 3 8 487 770 1251 1.54e-123 390
Msa0045550 MtrunA17_Chr4g0041871 35.158 475 303 3 1 472 99 571 1.44e-94 311
Msa0045550 MtrunA17_Chr4g0069361 41.263 475 277 2 8 481 801 1274 2.36e-123 390
Msa0045550 MtrunA17_Chr4g0069361 38.254 481 292 5 1 479 137 614 3.61e-108 349
Msa0045550 MtrunA17_Chr2g0285311 41.667 480 277 3 4 481 786 1264 8.42e-123 388
Msa0045550 MtrunA17_Chr2g0285311 38.144 485 295 5 1 483 128 609 1.68e-105 341
Msa0045550 MtrunA17_Chr6g0481921 41.286 482 280 3 2 481 686 1166 6.35e-122 384
Msa0045550 MtrunA17_Chr6g0481921 38.066 486 296 5 1 484 30 512 1.60e-104 337
Msa0045550 MtrunA17_Chr4g0069351 41.263 475 277 2 8 481 801 1274 3.40e-121 384
Msa0045550 MtrunA17_Chr4g0069351 38.382 482 290 7 1 479 137 614 6.61e-107 345
Msa0045550 MtrunA17_Chr4g0069401 42.316 475 272 2 8 481 799 1272 3.86e-121 384
Msa0045550 MtrunA17_Chr4g0069401 37.526 485 290 6 1 479 132 609 5.54e-103 335
Msa0045550 MtrunA17_Chr2g0285301 42.292 480 274 3 4 481 782 1260 4.56e-121 383
Msa0045550 MtrunA17_Chr2g0285301 38.697 491 289 8 1 483 118 604 1.56e-104 338
Msa0045550 MtrunA17_Chr6g0452171 39.709 481 285 3 2 478 779 1258 5.39e-120 380
Msa0045550 MtrunA17_Chr6g0452171 38.446 489 295 4 1 485 120 606 9.90e-106 342
Msa0045550 MtrunA17_Chr4g0039821 40.632 475 280 2 8 481 799 1272 3.05e-119 379
Msa0045550 MtrunA17_Chr4g0039821 37.630 481 295 5 1 479 135 612 7.30e-100 326
Msa0045550 MtrunA17_Chr4g0069411 43.424 479 269 2 8 485 815 1292 3.28e-119 379
Msa0045550 MtrunA17_Chr4g0069411 38.351 485 286 6 1 479 155 632 5.78e-99 324
Msa0045550 MtrunA17_Chr2g0285191 40.871 482 282 3 2 481 812 1292 1.13e-118 377
Msa0045550 MtrunA17_Chr2g0285191 38.571 490 296 5 1 488 157 643 1.65e-107 347
Msa0045550 MtrunA17_Chr6g0452141 39.085 481 288 3 2 478 776 1255 7.17e-117 372
Msa0045550 MtrunA17_Chr6g0452141 37.681 483 295 4 1 479 121 601 1.29e-107 347
Msa0045550 MtrunA17_Chr6g0452041 39.293 481 287 3 2 478 778 1257 1.07e-116 372
Msa0045550 MtrunA17_Chr6g0452041 38.716 483 290 4 1 479 120 600 5.19e-107 345
Msa0045550 MtrunA17_Chr1g0193991 41.387 476 276 3 8 481 809 1283 1.45e-116 372
Msa0045550 MtrunA17_Chr1g0193991 38.750 480 291 3 1 479 148 625 3.62e-107 346
Msa0045550 MtrunA17_Chr7g0233901 39.004 482 288 3 2 478 754 1234 4.03e-116 370
Msa0045550 MtrunA17_Chr7g0233901 37.628 489 299 4 1 485 116 602 5.41e-106 342
Msa0045550 MtrunA17_Chr6g0452111 39.501 481 286 3 2 478 777 1256 3.35e-115 368
Msa0045550 MtrunA17_Chr6g0452111 38.650 489 294 4 1 485 127 613 2.90e-107 346
Msa0045550 MtrunA17_Chr6g0452061 37.888 483 284 5 2 478 295 767 3.56e-113 352
Msa0045550 MtrunA17_Chr6g0452061 51.724 116 51 3 374 485 13 127 5.35e-24 105
Msa0045550 MtrunA17_Chr6g0452071 40.000 455 261 7 31 478 2 451 4.23e-113 342
Msa0045550 MtrunA17_Chr3g0138211 41.379 493 275 3 8 487 791 1282 1.48e-112 361
Msa0045550 MtrunA17_Chr3g0138211 36.907 485 293 6 1 479 155 632 1.02e-88 295
Msa0045550 MtrunA17_Chr6g0451881 37.759 482 294 4 2 478 765 1245 5.00e-110 353
Msa0045550 MtrunA17_Chr6g0451881 37.320 485 301 3 1 484 120 602 4.15e-107 345
Msa0045550 MtrunA17_Chr3g0119381 40.580 483 277 5 4 481 818 1295 2.37e-109 352
Msa0045550 MtrunA17_Chr3g0119381 37.344 482 290 6 3 478 159 634 3.23e-106 343
Msa0045550 MtrunA17_Chr6g0486841 38.398 487 281 6 1 477 758 1235 3.54e-109 351
Msa0045550 MtrunA17_Chr6g0486841 37.630 481 296 4 1 479 117 595 7.42e-97 317
Msa0045550 MtrunA17_Chr1g0194031 38.125 480 294 3 1 479 143 620 1.43e-107 340
Msa0045550 MtrunA17_Chr6g0451911 39.286 476 276 7 2 470 773 1242 2.15e-107 347
Msa0045550 MtrunA17_Chr6g0451911 36.646 483 300 4 1 479 120 600 9.27e-103 334
Msa0045550 MtrunA17_Chr1g0194001 44.772 373 204 2 97 468 1 372 3.84e-106 321
Msa0045550 MtrunA17_Chr8g0344651 36.439 483 297 4 1 479 357 833 1.38e-99 327
Msa0045550 MtrunA17_Chr8g0344651 39.167 480 287 4 3 479 1002 1479 5.26e-99 325
Msa0045550 MtrunA17_Chr4g0061601 33.265 487 310 8 4 484 151 628 1.77e-80 262
Msa0045550 MtrunA17_Chr6g0452081 51.931 233 107 2 217 449 1 228 4.34e-80 249
Msa0045550 MtrunA17_Chr6g0452051 33.867 375 247 1 1 375 41 414 1.79e-74 241
Msa0045550 MtrunA17_Chr8g0366451 33.773 379 246 3 1 377 74 449 3.17e-73 238
Msa0045550 MtrunA17_Chr7g0227391 32.787 488 302 11 2 477 187 660 6.16e-72 241
Msa0045550 MtrunA17_Chr6g0474071 46.275 255 126 6 232 477 196 448 8.56e-67 221
Msa0045550 MtrunA17_Chr5g0412741 30.801 487 318 10 2 479 218 694 4.67e-64 220
Msa0045550 MtrunA17_Chr3g0128391 28.365 416 285 3 1 416 16 418 5.94e-55 193
Msa0045550 MtrunA17_Chr3g0128391 58.654 104 42 1 374 477 446 548 2.85e-28 118
Msa0045550 MtrunA17_Chr5g0433051 39.773 264 153 4 215 477 439 697 2.03e-54 194
Msa0045550 MtrunA17_Chr5g0433071 33.256 433 267 13 52 477 282 699 1.82e-51 186
Msa0045550 MtrunA17_Chr1g0178481 38.492 252 140 6 229 469 366 613 7.86e-45 166
Msa0045550 MtrunA17_Chr2g0295921 31.387 274 165 6 217 485 1257 1512 1.91e-35 141
Msa0045550 MtrunA17_Chr2g0295921 27.755 245 155 5 229 468 637 864 3.50e-25 110
Msa0045550 MtrunA17_Chr2g0295901 33.068 251 155 5 240 485 1255 1497 3.92e-35 140
Msa0045550 MtrunA17_Chr2g0295901 25.939 293 198 5 181 468 574 852 7.95e-26 112
Msa0045550 MtrunA17_Chr2g0295911 32.824 262 162 6 229 485 1248 1500 4.54e-35 140
Msa0045550 MtrunA17_Chr2g0295911 27.686 242 159 3 229 468 625 852 6.45e-25 109
Msa0045550 MtrunA17_Chr8g0363771 30.741 270 173 5 223 485 1235 1497 3.82e-34 137
Msa0045550 MtrunA17_Chr8g0363771 26.370 292 192 6 196 481 586 860 4.62e-25 109
Msa0045550 MtrunA17_Chr8g0341851 29.927 274 184 5 222 491 1196 1465 3.58e-32 131
Msa0045550 MtrunA17_Chr8g0341851 27.376 263 166 4 227 481 585 830 5.11e-25 109
Msa0045550 MtrunA17_Chr8g0353781 32.246 276 166 8 228 491 1189 1455 9.13e-32 130
Msa0045550 MtrunA17_Chr8g0353781 25.311 241 166 2 241 481 597 823 3.57e-24 107
Msa0045550 MtrunA17_Chr8g0353541 31.716 268 167 6 223 482 805 1064 3.16e-31 128
Msa0045550 MtrunA17_Chr8g0353541 24.260 338 228 7 152 481 115 432 2.45e-25 110
Msa0045550 MtrunA17_Chr8g0341761 32.210 267 161 7 228 482 1183 1441 3.66e-31 128
Msa0045550 MtrunA17_Chr8g0341761 25.369 339 223 7 156 481 499 820 2.14e-25 110
Msa0045550 MtrunA17_Chr1g0195691 32.806 253 163 5 236 485 1264 1512 1.20e-30 126
Msa0045550 MtrunA17_Chr1g0195691 25.740 338 216 10 147 468 543 861 8.71e-23 102
Msa0045550 MtrunA17_Chr2g0333911 29.249 253 169 8 223 472 753 998 1.32e-30 126
Msa0045550 MtrunA17_Chr2g0333911 27.941 204 126 5 259 458 176 362 8.50e-16 80.5
Msa0045550 MtrunA17_Chr8g0341751 31.884 276 167 8 228 491 1022 1288 1.46e-30 126
Msa0045550 MtrunA17_Chr8g0341751 25.490 357 234 8 148 490 319 657 8.77e-27 114
Msa0045550 MtrunA17_Chr8g0376961 33.047 233 151 4 241 472 1196 1424 3.63e-30 125
Msa0045550 MtrunA17_Chr8g0376961 27.809 356 197 18 157 481 487 813 5.85e-19 90.9
Msa0045550 MtrunA17_Chr1g0183191 30.970 268 178 5 222 485 1260 1524 1.02e-29 124
Msa0045550 MtrunA17_Chr1g0183191 28.033 239 158 2 243 481 643 867 1.61e-22 101
Msa0045550 MtrunA17_Chr1g0202221 28.736 261 175 7 228 482 1117 1372 1.09e-29 123
Msa0045550 MtrunA17_Chr1g0202221 24.251 334 225 9 159 481 527 843 2.11e-22 101
Msa0045550 MtrunA17_Chr7g0262191 30.451 266 174 6 228 485 1262 1524 1.86e-29 123
Msa0045550 MtrunA17_Chr7g0262191 27.843 255 167 5 229 481 624 863 5.37e-24 106
Msa0045550 MtrunA17_Chr8g0341811 29.358 327 204 11 182 490 958 1275 2.00e-29 122
Msa0045550 MtrunA17_Chr8g0341811 28.054 221 145 2 261 481 455 661 5.10e-24 106
Msa0045550 MtrunA17_Chr8g0366471 44.697 132 65 3 363 487 7 137 2.05e-29 112
Msa0045550 MtrunA17_Chr8g0337121 30.859 256 168 6 235 485 1248 1499 7.34e-29 121
Msa0045550 MtrunA17_Chr8g0337121 28.085 235 149 6 250 481 634 851 2.76e-20 94.7
Msa0045550 MtrunA17_Chr6g0463181 28.740 254 170 7 235 482 1201 1449 9.01e-29 120
Msa0045550 MtrunA17_Chr6g0463181 28.279 244 161 2 238 481 602 831 1.70e-25 110
Msa0045550 MtrunA17_Chr8g0337191 30.859 256 168 6 235 485 1228 1479 1.22e-28 120
Msa0045550 MtrunA17_Chr8g0337191 28.511 235 148 6 250 481 614 831 6.88e-21 96.7
Msa0045550 MtrunA17_Chr5g0412721 30.120 249 169 4 224 471 1227 1471 1.93e-28 120
Msa0045550 MtrunA17_Chr5g0412721 28.897 263 167 6 222 481 598 843 1.09e-22 102
Msa0045550 MtrunA17_Chr3g0085281 33.032 221 143 4 241 460 1219 1435 3.41e-28 119
Msa0045550 MtrunA17_Chr3g0085281 25.104 482 291 22 37 488 384 825 3.70e-20 94.4
Msa0045550 MtrunA17_Chr6g0463121 28.958 259 172 7 235 485 1217 1471 8.09e-28 118
Msa0045550 MtrunA17_Chr6g0463121 29.167 240 156 2 242 481 619 844 8.17e-27 115
Msa0045550 MtrunA17_Chr2g0285731 28.800 250 157 5 235 479 605 838 1.06e-27 117
Msa0045550 MtrunA17_Chr2g0285731 30.196 255 168 6 223 472 1214 1463 1.16e-25 111
Msa0045550 MtrunA17_Chr6g0463131 26.164 451 264 13 59 481 436 845 1.22e-27 117
Msa0045550 MtrunA17_Chr6g0463131 27.273 253 175 6 235 482 1218 1466 3.42e-27 116
Msa0045550 MtrunA17_Chr5g0445741 31.304 230 153 4 240 468 1248 1473 1.44e-27 117
Msa0045550 MtrunA17_Chr5g0445741 29.658 263 165 6 222 481 609 854 4.05e-23 103
Msa0045550 MtrunA17_Chr6g0463151 28.627 255 172 7 236 485 1037 1286 1.44e-27 117
Msa0045550 MtrunA17_Chr6g0463151 27.459 244 163 2 238 481 433 662 6.58e-24 105
Msa0045550 MtrunA17_Chr3g0101461 30.870 230 154 4 240 468 1059 1284 4.71e-27 115
Msa0045550 MtrunA17_Chr3g0101461 30.864 243 148 6 242 481 431 656 4.37e-24 106
Msa0045550 MtrunA17_Chr5g0412941 28.862 246 170 4 224 468 66 307 9.02e-27 110
Msa0045550 MtrunA17_Chr8g0359291 28.063 253 173 6 235 482 399 647 1.23e-26 113
Msa0045550 MtrunA17_Chr5g0445671 31.304 230 153 4 240 468 857 1082 1.43e-26 114
Msa0045550 MtrunA17_Chr5g0445671 27.757 263 170 5 222 481 218 463 2.39e-22 101
Msa0045550 MtrunA17_Chr6g0463201 30.290 241 157 7 235 470 1223 1457 3.09e-26 113
Msa0045550 MtrunA17_Chr6g0463201 26.053 380 254 9 123 492 497 859 3.05e-24 107
Msa0045550 MtrunA17_Chr6g0463141 28.125 256 173 7 236 485 1243 1493 3.90e-26 112
Msa0045550 MtrunA17_Chr6g0463141 24.587 484 293 15 37 481 419 869 3.22e-25 110
Msa0045550 MtrunA17_Chr3g0101441 29.565 230 157 4 240 468 1059 1284 4.03e-26 112
Msa0045550 MtrunA17_Chr3g0101441 30.864 243 148 6 242 481 431 656 2.20e-23 104
Msa0045550 MtrunA17_Chr6g0472531 29.310 232 150 2 238 469 566 783 5.55e-26 112
Msa0045550 MtrunA17_Chr6g0472531 26.877 253 174 7 235 481 1168 1415 1.14e-25 111
Msa0045550 MtrunA17_Chr3g0101471 28.610 367 227 12 122 481 316 654 6.32e-26 112
Msa0045550 MtrunA17_Chr3g0101471 27.839 273 187 6 202 468 1014 1282 1.85e-25 110
Msa0045550 MtrunA17_Chr6g0463391 30.973 226 147 7 237 460 409 627 7.32e-26 111
Msa0045550 MtrunA17_Chr6g0463211 29.762 252 164 8 237 482 1295 1539 1.11e-25 111
Msa0045550 MtrunA17_Chr6g0463211 26.971 241 162 2 241 481 656 882 1.27e-23 105
Msa0045550 MtrunA17_Chr6g0484351 31.461 267 163 7 228 482 390 648 3.12e-25 109
Msa0045550 MtrunA17_Chr8g0341801 30.189 265 175 6 223 482 164 423 5.74e-25 107
Msa0045550 MtrunA17_Chr5g0412921 29.217 332 207 12 159 481 522 834 6.87e-25 108
Msa0045550 MtrunA17_Chr3g0101481 29.787 235 159 5 240 473 1252 1481 1.00e-24 108
Msa0045550 MtrunA17_Chr3g0101481 29.771 262 160 7 221 481 610 848 1.51e-22 102
Msa0045550 MtrunA17_Chr5g0445701 32.967 182 120 2 259 440 11 190 2.41e-24 101
Msa0045550 MtrunA17_Chr3g0080941 30.962 239 155 6 235 468 1224 1457 6.36e-24 106
Msa0045550 MtrunA17_Chr3g0080941 28.063 253 156 8 235 479 605 839 1.75e-23 104
Msa0045550 MtrunA17_Chr3g0080981 30.962 239 155 6 235 468 1223 1456 7.18e-24 105
Msa0045550 MtrunA17_Chr3g0080981 28.063 253 156 8 235 479 605 839 1.51e-23 105
Msa0045550 MtrunA17_Chr6g0471281 26.639 244 165 2 238 481 616 845 6.09e-23 103
Msa0045550 MtrunA17_Chr6g0471281 29.461 241 160 6 235 470 1218 1453 1.03e-21 99.4
Msa0045550 MtrunA17_Chr8g0341791 29.193 161 113 1 321 481 16 175 1.06e-21 96.7
Msa0045550 MtrunA17_Chr6g0484361 28.436 211 136 3 243 452 604 800 2.02e-19 91.7
Msa0045550 MtrunA17_Chr8g0393151 28.095 210 130 5 260 460 35 232 1.56e-18 85.1
Msa0045550 MtrunA17_Chr6g0463401 28.090 178 114 2 241 418 626 789 7.11e-17 84.0
Msa0045550 MtrunA17_Chr2g0285231 47.126 87 45 1 386 472 19 104 7.51e-17 76.3
Msa0045550 MtrunA17_Chr3g0130211 23.695 249 162 7 242 480 35 265 8.76e-15 74.3
Msa0045550 MtrunA17_Chr7g0249091 27.099 262 140 12 243 471 86 329 2.29e-14 74.3
Msa0045550 MtrunA17_Chr8g0349441 25.698 179 115 2 242 420 44 204 3.85e-14 71.6
Msa0045550 MtrunA17_Chr1g0202431 26.457 223 149 8 251 467 42 255 8.74e-14 73.9
Msa0045550 MtrunA17_Chr4g0065231 26.104 249 147 12 246 470 57 292 9.43e-14 73.9
Msa0045550 MtrunA17_Chr6g0452091 25.749 167 123 1 1 167 49 214 4.88e-13 68.9
Msa0045550 MtrunA17_Chr1g0176451 26.087 207 138 8 260 456 23 224 1.30e-12 70.1
Msa0045550 MtrunA17_Chr6g0477811 29.108 213 135 6 260 462 66 272 1.39e-12 70.1
Msa0045550 MtrunA17_Chr8g0393191 24.091 220 154 5 257 467 66 281 2.47e-12 69.3
Msa0045550 MtrunA17_Chr8g0384391 25.551 227 151 10 260 478 56 272 6.43e-12 68.2
Msa0045550 MtrunA17_Chr1g0198931 24.631 203 136 7 271 462 118 314 1.18e-11 67.4
Msa0045550 MtrunA17_Chr1g0200651 26.389 216 143 8 257 462 87 296 1.97e-11 66.6
Msa0045550 MtrunA17_Chr4g0039261 30.233 215 130 9 260 462 51 257 2.89e-11 65.9
Msa0045550 MtrunA17_Chr8g0359931 26.289 194 128 7 257 442 63 249 4.81e-11 65.1
Msa0045550 MtrunA17_Chr4g0074281 24.561 171 103 3 260 421 25 178 5.77e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0045550 AT3G55320.1 89.002 491 54 0 2 492 918 1408 0.0 901
Msa0045550 AT3G55320.1 36.134 476 299 4 4 479 178 648 2.15e-89 298
Msa0045550 AT2G39480.2 87.576 491 61 0 2 492 737 1227 0.0 885
Msa0045550 AT2G39480.2 37.263 475 285 7 9 479 1 466 5.24e-86 288
Msa0045550 AT2G39480.1 87.576 491 61 0 2 492 917 1407 0.0 884
Msa0045550 AT2G39480.1 37.083 480 289 7 4 479 176 646 1.41e-86 290
Msa0045550 AT4G25960.1 46.331 477 252 3 3 478 792 1265 2.59e-145 448
Msa0045550 AT4G25960.1 35.306 490 314 3 1 489 160 647 2.24e-102 333
Msa0045550 AT1G10680.1 45.188 478 258 3 2 478 743 1217 4.62e-144 444
Msa0045550 AT1G10680.1 36.250 480 299 4 1 479 124 597 9.86e-106 342
Msa0045550 AT1G27940.2 44.654 477 262 2 2 477 549 1024 3.44e-143 437
Msa0045550 AT1G27940.2 41.772 395 223 4 87 478 1 391 1.37e-93 306
Msa0045550 AT1G27940.1 44.654 477 262 2 2 477 763 1238 9.85e-141 436
Msa0045550 AT1G27940.1 38.046 481 290 5 1 478 130 605 6.93e-104 337
Msa0045550 AT3G28860.1 43.699 492 269 3 1 491 768 1252 2.62e-139 432
Msa0045550 AT3G28860.1 37.214 481 296 4 1 479 124 600 2.22e-105 341
Msa0045550 AT1G28010.1 43.606 477 267 2 2 477 765 1240 3.23e-131 410
Msa0045550 AT1G28010.1 37.214 481 296 5 1 479 131 607 1.93e-101 330
Msa0045550 AT2G36910.1 41.701 482 277 3 1 479 781 1261 3.23e-130 409
Msa0045550 AT2G36910.1 42.620 481 272 3 1 479 127 605 2.26e-121 385
Msa0045550 AT1G10680.2 45.972 422 226 1 2 423 743 1162 1.70e-128 402
Msa0045550 AT1G10680.2 36.402 478 297 4 3 479 126 597 6.31e-106 342
Msa0045550 AT1G02520.1 41.213 478 276 3 8 481 797 1273 1.37e-125 396
Msa0045550 AT1G02520.1 38.669 481 290 5 1 479 140 617 1.70e-103 336
Msa0045550 AT1G02520.2 41.213 478 276 3 8 481 797 1273 1.37e-125 396
Msa0045550 AT1G02520.2 38.669 481 290 5 1 479 140 617 1.70e-103 336
Msa0045550 AT1G02520.3 41.213 478 276 3 8 481 797 1273 1.37e-125 396
Msa0045550 AT1G02520.3 38.669 481 290 5 1 479 140 617 1.70e-103 336
Msa0045550 AT2G47000.6 41.509 477 276 3 8 482 807 1282 3.51e-124 392
Msa0045550 AT2G47000.6 37.838 481 294 5 1 479 143 620 2.78e-100 328
Msa0045550 AT2G47000.5 41.509 477 276 3 8 482 807 1282 3.51e-124 392
Msa0045550 AT2G47000.5 37.838 481 294 5 1 479 143 620 2.78e-100 328
Msa0045550 AT2G47000.1 41.509 477 276 3 8 482 807 1282 3.51e-124 392
Msa0045550 AT2G47000.1 37.838 481 294 5 1 479 143 620 2.78e-100 328
Msa0045550 AT3G62150.3 40.956 481 281 3 4 482 813 1292 4.35e-123 390
Msa0045550 AT3G62150.3 37.732 485 289 7 1 479 162 639 3.39e-107 347
Msa0045550 AT3G62150.2 40.956 481 281 3 4 482 813 1292 4.35e-123 390
Msa0045550 AT3G62150.2 37.732 485 289 7 1 479 162 639 3.39e-107 347
Msa0045550 AT3G62150.1 40.956 481 281 3 4 482 813 1292 4.35e-123 390
Msa0045550 AT3G62150.1 37.732 485 289 7 1 479 162 639 3.39e-107 347
Msa0045550 AT1G02530.1 40.586 478 279 3 8 481 792 1268 1.62e-122 388
Msa0045550 AT1G02530.1 38.462 481 291 5 1 479 127 604 8.44e-103 334
Msa0045550 AT4G01830.2 40.881 477 278 3 8 481 516 991 1.94e-122 382
Msa0045550 AT4G01830.2 42.697 356 202 2 125 479 1 355 1.38e-86 286
Msa0045550 AT4G01830.1 40.881 477 278 3 8 481 750 1225 1.25e-120 382
Msa0045550 AT4G01830.1 39.167 480 289 3 1 479 112 589 1.51e-105 341
Msa0045550 AT3G28415.1 40.041 482 284 3 1 478 734 1214 1.68e-120 381
Msa0045550 AT3G28415.1 36.667 480 301 3 1 479 97 574 4.16e-104 337
Msa0045550 AT3G28415.2 40.041 482 284 3 1 478 742 1222 2.79e-120 381
Msa0045550 AT3G28415.2 36.667 480 301 3 1 479 105 582 6.62e-104 337
Msa0045550 AT3G28390.1 40.871 482 280 3 1 478 738 1218 3.48e-120 380
Msa0045550 AT3G28390.1 38.302 483 292 4 1 479 106 586 1.92e-107 346
Msa0045550 AT3G28345.1 40.456 482 282 3 1 478 753 1233 2.34e-119 379
Msa0045550 AT3G28345.1 39.167 480 289 3 1 479 118 595 4.59e-110 353
Msa0045550 AT3G28360.1 40.456 482 282 3 1 478 739 1219 7.12e-118 374
Msa0045550 AT3G28360.1 38.382 482 292 3 1 479 105 584 3.55e-105 340
Msa0045550 AT3G28380.1 39.293 481 287 3 1 477 753 1232 2.03e-117 374
Msa0045550 AT3G28380.1 37.578 479 296 3 1 478 118 594 2.27e-105 341
Msa0045550 AT5G46540.1 40.851 470 276 2 4 472 766 1234 8.46e-116 369
Msa0045550 AT5G46540.1 37.782 487 294 6 1 483 116 597 4.25e-105 340
Msa0045550 AT4G01820.1 40.671 477 279 3 8 481 749 1224 3.81e-114 364
Msa0045550 AT4G01820.1 38.542 480 292 3 1 479 107 584 1.61e-101 330
Msa0045550 AT4G18050.1 40.956 481 266 4 4 482 769 1233 8.68e-108 347
Msa0045550 AT4G18050.1 38.889 486 290 5 1 483 114 595 3.56e-104 338
Msa0045550 AT4G18050.2 40.956 481 266 4 4 482 779 1243 9.26e-108 347
Msa0045550 AT4G18050.2 38.889 486 290 5 1 483 124 605 3.92e-104 338
Msa0045550 AT1G02530.2 38.462 481 291 5 1 479 127 604 2.04e-104 333
Msa0045550 AT1G02530.2 34.568 162 106 0 8 169 792 953 3.47e-26 113
Msa0045550 AT4G01820.2 38.542 480 292 3 1 479 107 584 4.93e-103 330
Msa0045550 AT4G01820.2 32.716 162 109 0 8 169 749 910 3.96e-25 110
Msa0045550 AT2G47000.3 37.838 481 294 5 1 479 143 620 1.21e-101 327
Msa0045550 AT2G47000.3 33.133 166 111 0 8 173 807 972 2.09e-26 114
Msa0045550 AT2G47000.7 37.838 481 294 5 1 479 143 620 1.21e-101 327
Msa0045550 AT2G47000.7 33.133 166 111 0 8 173 807 972 2.09e-26 114
Msa0045550 AT2G47000.4 37.838 481 294 5 1 479 143 620 6.34e-101 327
Msa0045550 AT2G47000.4 32.075 265 180 0 8 272 807 1071 8.21e-42 160
Msa0045550 AT2G47000.2 37.838 481 294 5 1 479 143 620 1.29e-100 327
Msa0045550 AT2G47000.2 38.017 363 224 1 8 369 807 1169 1.93e-80 272
Msa0045550 AT5G39040.1 33.811 488 296 10 4 479 160 632 3.95e-79 259
Msa0045550 AT1G70610.2 31.837 490 309 10 2 479 36 512 1.61e-70 233
Msa0045550 AT1G70610.1 31.837 490 309 10 2 479 217 693 1.32e-68 233
Msa0045550 AT5G58270.1 32.947 431 271 9 52 477 293 710 1.40e-61 214
Msa0045550 AT4G25450.3 45.833 240 127 2 241 478 299 537 2.74e-61 210
Msa0045550 AT4G25450.1 45.833 240 127 2 241 478 468 706 6.25e-60 209
Msa0045550 AT4G28630.1 40.000 265 154 3 215 477 407 668 5.54e-56 198
Msa0045550 AT4G28620.1 40.755 265 152 3 215 477 409 670 1.00e-55 197
Msa0045550 AT5G03910.1 38.376 271 149 6 220 475 367 634 2.54e-42 159
Msa0045550 AT5G39040.2 28.846 364 233 9 4 355 160 509 2.99e-33 132
Msa0045550 AT3G21250.5 32.448 339 197 14 157 482 1127 1446 1.34e-32 132
Msa0045550 AT3G21250.5 27.820 266 159 5 219 481 582 817 6.48e-21 97.4
Msa0045550 AT3G21250.1 32.448 339 197 14 157 482 1121 1440 1.42e-32 132
Msa0045550 AT3G21250.1 27.820 266 159 5 219 481 576 811 6.42e-21 97.4
Msa0045550 AT3G21250.2 32.448 339 197 14 157 482 1132 1451 1.56e-32 132
Msa0045550 AT3G21250.2 28.947 266 167 4 219 481 576 822 1.28e-25 111
Msa0045550 AT3G21250.4 32.448 339 197 14 157 482 1138 1457 1.56e-32 132
Msa0045550 AT3G21250.4 28.947 266 167 4 219 481 582 828 1.43e-25 111
Msa0045550 AT3G21250.6 32.448 339 197 14 157 482 716 1035 2.24e-32 132
Msa0045550 AT3G21250.6 28.947 266 167 4 219 481 160 406 3.06e-25 110
Msa0045550 AT3G21250.3 32.448 339 197 14 157 482 716 1035 2.24e-32 132
Msa0045550 AT3G21250.3 28.947 266 167 4 219 481 160 406 3.06e-25 110
Msa0045550 AT3G62700.1 34.137 249 157 5 236 481 1288 1532 4.54e-31 128
Msa0045550 AT3G62700.1 24.000 350 227 11 150 481 535 863 3.47e-22 101
Msa0045550 AT4G25450.2 44.000 150 82 1 241 388 468 617 3.25e-30 124
Msa0045550 AT3G60160.3 31.419 296 178 8 206 491 1177 1457 8.03e-30 124
Msa0045550 AT3G60160.3 30.864 243 148 3 242 481 593 818 2.21e-22 101
Msa0045550 AT1G04120.1 30.797 276 172 7 218 485 1244 1508 8.41e-30 124
Msa0045550 AT1G04120.1 29.167 240 156 2 242 481 621 846 6.69e-25 109
Msa0045550 AT3G59140.1 29.615 260 174 6 228 482 1189 1444 8.68e-30 124
Msa0045550 AT3G59140.1 27.988 343 204 12 159 481 507 826 5.19e-24 106
Msa0045550 AT3G60160.1 31.419 296 178 8 206 491 1213 1493 9.03e-30 124
Msa0045550 AT3G60160.1 30.864 243 148 3 242 481 629 854 2.43e-22 101
Msa0045550 AT1G04120.3 30.797 276 172 7 218 485 1209 1473 1.02e-29 124
Msa0045550 AT1G04120.3 29.167 240 156 2 242 481 586 811 9.87e-25 108
Msa0045550 AT2G47800.1 32.443 262 165 6 228 481 1252 1509 2.73e-29 122
Msa0045550 AT2G47800.1 25.581 344 229 10 150 481 537 865 8.24e-24 106
Msa0045550 AT2G34660.1 28.197 305 192 5 179 479 556 837 1.89e-28 120
Msa0045550 AT2G34660.1 29.020 255 176 4 220 472 1217 1468 7.34e-24 106
Msa0045550 AT2G34660.2 28.197 305 192 5 179 479 556 837 1.89e-28 120
Msa0045550 AT2G34660.2 29.020 255 176 4 220 472 1217 1468 7.34e-24 106
Msa0045550 AT2G34660.3 27.445 317 203 5 167 479 257 550 2.94e-28 119
Msa0045550 AT2G34660.3 29.020 255 176 4 220 472 930 1181 1.38e-23 105
Msa0045550 AT3G60970.1 30.822 292 185 7 206 491 760 1040 3.40e-28 119
Msa0045550 AT3G60970.1 26.331 357 228 7 122 471 100 428 1.33e-26 114
Msa0045550 AT1G04120.2 30.435 276 168 9 218 485 1244 1503 1.62e-27 117
Msa0045550 AT1G04120.2 29.167 240 156 2 242 481 621 846 7.18e-25 109
Msa0045550 AT2G07680.5 28.731 268 176 8 208 468 1136 1395 5.28e-27 115
Msa0045550 AT2G07680.5 27.670 206 134 3 259 463 583 774 4.51e-17 85.1
Msa0045550 AT2G07680.1 28.731 268 176 8 208 468 1130 1389 5.52e-27 115
Msa0045550 AT2G07680.1 27.670 206 134 3 259 463 577 768 4.84e-17 85.1
Msa0045550 AT2G07680.3 28.731 268 176 8 208 468 1152 1411 5.55e-27 115
Msa0045550 AT2G07680.3 27.670 206 134 3 259 463 599 790 4.90e-17 85.1
Msa0045550 AT2G07680.4 28.731 268 176 8 208 468 1127 1386 5.57e-27 115
Msa0045550 AT2G07680.4 27.670 206 134 3 259 463 574 765 4.83e-17 85.1
Msa0045550 AT2G07680.6 28.413 271 179 8 208 471 1053 1315 5.76e-27 115
Msa0045550 AT2G07680.6 27.670 206 134 3 259 463 500 691 5.38e-17 85.1
Msa0045550 AT1G30400.2 27.869 305 193 8 179 479 556 837 4.16e-26 113
Msa0045550 AT1G30400.2 30.864 243 157 7 235 472 1226 1462 5.83e-23 103
Msa0045550 AT1G30400.1 27.869 305 193 8 179 479 556 837 4.16e-26 113
Msa0045550 AT1G30400.1 30.864 243 157 7 235 472 1226 1462 5.83e-23 103
Msa0045550 AT3G13100.1 32.599 227 145 5 241 466 1239 1458 6.55e-26 112
Msa0045550 AT3G13100.1 27.917 240 157 5 243 481 624 848 2.25e-17 86.3
Msa0045550 AT3G13100.2 32.599 227 145 5 241 466 994 1213 8.65e-26 112
Msa0045550 AT3G13100.2 27.917 240 157 5 243 481 379 603 4.09e-17 85.5
Msa0045550 AT1G30420.1 31.225 253 160 7 228 471 1213 1460 2.93e-25 110
Msa0045550 AT1G30420.1 27.711 249 165 5 233 479 603 838 1.20e-21 99.8
Msa0045550 AT3G13090.1 29.344 259 163 5 235 478 1199 1452 5.48e-25 109
Msa0045550 AT3G13090.1 27.801 241 158 5 242 481 600 825 3.69e-17 85.5
Msa0045550 AT3G13080.1 29.771 262 174 6 213 468 1234 1491 1.52e-24 108
Msa0045550 AT3G13080.1 28.090 267 161 7 218 481 626 864 1.25e-15 80.9
Msa0045550 AT1G30410.2 31.760 233 152 5 241 471 1233 1460 3.34e-24 107
Msa0045550 AT1G30410.2 27.888 251 162 4 233 479 603 838 1.60e-21 99.4
Msa0045550 AT1G30410.6 31.760 233 152 5 241 471 1233 1460 3.34e-24 107
Msa0045550 AT1G30410.6 27.888 251 162 4 233 479 603 838 1.60e-21 99.4
Msa0045550 AT1G30410.4 31.760 233 152 5 241 471 1233 1460 3.34e-24 107
Msa0045550 AT1G30410.4 27.888 251 162 4 233 479 603 838 1.60e-21 99.4
Msa0045550 AT1G30410.1 31.760 233 152 5 241 471 1236 1463 3.34e-24 107
Msa0045550 AT1G30410.1 27.888 251 162 4 233 479 606 841 1.64e-21 99.0
Msa0045550 AT1G30410.5 31.760 233 152 5 241 471 1118 1345 5.78e-24 106
Msa0045550 AT1G30410.5 27.888 251 162 4 233 479 488 723 2.52e-21 98.6
Msa0045550 AT3G13080.5 29.200 250 167 6 213 456 1234 1479 8.15e-24 106
Msa0045550 AT3G13080.5 28.090 267 161 7 218 481 626 864 1.03e-15 80.9
Msa0045550 AT3G60160.2 31.330 233 140 3 242 471 629 844 1.67e-22 102
Msa0045550 AT3G60160.2 35.000 140 83 4 206 339 1213 1350 3.22e-13 73.2
Msa0045550 AT1G30420.2 27.711 249 165 5 233 479 603 838 7.94e-22 100
Msa0045550 AT1G30410.3 27.888 251 162 4 233 479 603 838 1.64e-21 99.0
Msa0045550 AT1G30410.3 32.847 137 86 4 241 375 1233 1365 1.33e-11 67.8
Msa0045550 AT1G67940.1 29.064 203 136 3 260 460 44 240 3.26e-20 90.9
Msa0045550 AT2G07680.2 27.670 206 134 3 259 463 599 790 2.19e-17 86.3
Msa0045550 AT3G13080.3 28.090 267 161 7 218 481 626 864 5.21e-16 81.6
Msa0045550 AT3G13080.4 28.090 267 161 7 218 481 626 864 5.21e-16 81.6
Msa0045550 AT5G19410.2 28.854 253 148 14 234 467 53 292 6.40e-16 80.9
Msa0045550 AT5G19410.1 28.854 253 148 14 234 467 44 283 7.34e-16 80.9
Msa0045550 AT3G13080.2 28.090 267 161 7 218 481 626 864 1.11e-15 80.9
Msa0045550 AT1G53270.1 27.477 222 147 8 255 467 45 261 4.15e-15 78.6
Msa0045550 AT1G65410.1 27.099 262 140 11 243 471 85 328 2.12e-14 75.1
Msa0045550 AT4G33460.1 25.984 254 142 10 242 475 39 266 7.90e-14 72.0
Msa0045550 AT5G52860.1 24.603 252 177 8 223 467 3 248 1.96e-12 70.1
Msa0045550 AT1G17840.1 29.577 213 134 7 260 462 69 275 3.99e-12 69.3
Msa0045550 AT1G71330.1 32.759 116 76 2 367 481 22 136 4.07e-12 67.8
Msa0045550 AT4G25750.1 24.268 239 164 6 242 469 5 237 5.68e-12 68.6
Msa0045550 AT2G41700.2 24.291 247 170 9 245 482 1413 1651 7.90e-12 68.6
Msa0045550 AT2G41700.1 24.380 242 166 9 245 477 1455 1688 3.28e-11 66.6
Msa0045550 AT1G51500.1 31.707 205 119 10 271 462 55 251 4.86e-11 65.9

Find 141 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCAGTTGTGGGAGTTTC+AGG 0.145917 1_1:-77489415 Msa0045550:CDS
CGATTAATGCAACCTCATTT+TGG 0.197050 1_1:-77488809 Msa0045550:CDS
AAAGATAGAAATTTGAAGTT+TGG 0.248624 1_1:-77488547 Msa0045550:three_prime_UTR
GTTTGGTTGGTTTGAGGATT+TGG 0.250632 1_1:-77488530 Msa0045550:three_prime_UTR
TTTGCACTTGTGGAGCCTTT+TGG 0.262053 1_1:-77489655 Msa0045550:CDS
CGCTCAACGTCTTTCAAGTC+TGG 0.288939 1_1:-77488355 Msa0045550:three_prime_UTR
GGCTCTTGACACTCTTATAA+TGG 0.292575 1_1:-77488969 Msa0045550:CDS
TTGTGGATGCTGAATTCTTT+TGG 0.297681 1_1:-77488506 Msa0045550:three_prime_UTR
GAGCACTATTATATCTTTGA+TGG 0.301118 1_1:-77489383 Msa0045550:CDS
TGGTTTGAGGATTTGGGTTG+TGG 0.301649 1_1:-77488523 Msa0045550:three_prime_UTR
CATAATTAGCTATAGTTTAG+AGG 0.302367 1_1:-77488259 Msa0045550:three_prime_UTR
ATGTCAGGTGGAGGTTTGTA+TGG 0.316932 1_1:-77488647 Msa0045550:three_prime_UTR
TTTGGTTGGTTTGAGGATTT+GGG 0.318580 1_1:-77488529 Msa0045550:three_prime_UTR
CTCTTTCATTTCAGCTTCAC+TGG 0.324395 1_1:+77489198 None:intergenic
ATGGTTGTTGAGAAGATAAT+TGG 0.326905 1_1:+77489253 None:intergenic
CAAAATGAGGTTGCATTAAT+CGG 0.331202 1_1:+77488810 None:intergenic
GACAATATAGTCGTGCTTAA+TGG 0.332668 1_1:-77488893 Msa0045550:CDS
TTGAAGCCACCCAATGTATA+TGG 0.336534 1_1:-77489535 Msa0045550:CDS
AATGCACCGAAAGGCATCTT+TGG 0.343392 1_1:-77489947 Msa0045550:CDS
TGTGAGTAATTGACTAATAT+TGG 0.347984 1_1:-77488741 Msa0045550:three_prime_UTR
TTGTAGAAATTGTGGCTTGC+TGG 0.349363 1_1:-77489991 Msa0045550:intron
CTTGTAATGCCCTTCTACTC+TGG 0.351689 1_1:-77489759 Msa0045550:CDS
TTGCTTAATACCAGCACTTC+AGG 0.354170 1_1:+77489469 None:intergenic
AGCTTCACTGGCATTATGTC+TGG 0.356367 1_1:+77489210 None:intergenic
TTTAAGCAGAGCTTTCTTCA+TGG 0.358542 1_1:-77489829 Msa0045550:CDS
AGCTATTGTGACTCTTATAC+AGG 0.359571 1_1:-77488388 Msa0045550:three_prime_UTR
TTGCAGTGTACCAGAGTAGA+AGG 0.373696 1_1:+77489749 None:intergenic
CGACAATTTATCCATGCGTT+TGG 0.379592 1_1:-77490502 Msa0045550:CDS
ATATACATTGGGTGGCTTCA+AGG 0.384002 1_1:+77489537 None:intergenic
CAGACTTTCTATATTTATAC+AGG 0.384082 1_1:-77490442 Msa0045550:CDS
TAAAACTATATAATCTGAAA+TGG 0.395378 1_1:-77489309 Msa0045550:CDS
GGTTGGCGCACGGCATTGAT+AGG 0.402110 1_1:-77488609 Msa0045550:three_prime_UTR
AGTAAAACTTGGCCAGCAAC+TGG 0.412427 1_1:+77489346 None:intergenic
ATTTGCTACATTTGCACTTG+TGG 0.413710 1_1:-77489665 Msa0045550:CDS
TCCTTGCCAGCAATGAATCA+TGG 0.419083 1_1:+77488846 None:intergenic
TGGAGGACGGATTGTGGAAG+AGG 0.420617 1_1:-77488873 Msa0045550:CDS
GCAATCCTCTGTTTCTGTCC+TGG 0.425040 1_1:+77489085 None:intergenic
TTCAAGGCTGAGCTTTCATC+AGG 0.426321 1_1:+77489553 None:intergenic
AAATGCACCTATCTTGTTGT+TGG 0.434154 1_1:-77489041 Msa0045550:CDS
GCTCTTGACACTCTTATAAT+GGG 0.434333 1_1:-77488968 Msa0045550:CDS
TTTCTTCATGGATTGGCCAT+TGG 0.434389 1_1:-77489817 Msa0045550:CDS
TTTGAAGTTTGGTTGGTTTG+AGG 0.435784 1_1:-77488536 Msa0045550:three_prime_UTR
CCCTCCCATCCAGTAAAACT+TGG 0.437045 1_1:+77489335 None:intergenic
GGGGACCCATGATTCATTGC+TGG 0.437535 1_1:-77488852 Msa0045550:CDS
TTATCTTCTCAACAACCATA+AGG 0.439450 1_1:-77489249 Msa0045550:CDS
CTGTGTTTCTGCTATTGCCC+AGG 0.443986 1_1:-77490331 Msa0045550:intron
TCGCACAAACGTAGCATCAT+TGG 0.444476 1_1:+77490479 None:intergenic
TCCTACTCGGCCTGAAGTGC+TGG 0.450003 1_1:-77489479 Msa0045550:CDS
AGATATTATGATCCAGTTGC+TGG 0.452971 1_1:-77489358 Msa0045550:CDS
GCAGAGCTTTCTTCATGGAT+TGG 0.456089 1_1:-77489824 Msa0045550:CDS
TTGTGCTGGTAATAAGGTAA+TGG 0.457832 1_1:-77489881 Msa0045550:CDS
TGTGGCTTTAGCAACACTTC+CGG 0.458612 1_1:-77490358 Msa0045550:CDS
CCACCTTGGTCTGGTTCAGC+AGG 0.458627 1_1:-77489278 Msa0045550:CDS
TTACGTCGCTTGAGTATGTA+AGG 0.461376 1_1:+77489625 None:intergenic
GCTTCATCCAACAACAAGAT+AGG 0.466204 1_1:+77489034 None:intergenic
GTTGTGGGAGTTTCAGGGTC+AGG 0.466412 1_1:-77489409 Msa0045550:CDS
GTATGGGAATGATGAAGCTT+GGG 0.466971 1_1:-77488630 Msa0045550:three_prime_UTR
GCTAAGGAGCCACCTTGGTC+TGG 0.469086 1_1:-77489287 Msa0045550:CDS
AGCCTCTTGCACTACTCGGC+TGG 0.473926 1_1:+77488988 None:intergenic
TGTATGGGAATGATGAAGCT+TGG 0.474387 1_1:-77488631 Msa0045550:three_prime_UTR
CTCAATGCTTCCATATACAT+TGG 0.475946 1_1:+77489525 None:intergenic
ATAGAAATTTGAAGTTTGGT+TGG 0.476203 1_1:-77488543 Msa0045550:three_prime_UTR
CAAGAACCAAAGATGCCTTT+CGG 0.476540 1_1:+77489941 None:intergenic
TATCTTCTCAACAACCATAA+GGG 0.485858 1_1:-77489248 Msa0045550:CDS
GCCATGCTACGTAATGAGAT+TGG 0.486728 1_1:-77490552 Msa0045550:CDS
TTGATTTGCTGTACAATGAC+AGG 0.487248 1_1:-77488433 Msa0045550:three_prime_UTR
ATAAGGTAATGGAACTCTAC+AGG 0.493151 1_1:-77489870 Msa0045550:CDS
TTGCAGTTGTGGGAGTTTCA+GGG 0.497796 1_1:-77489414 Msa0045550:CDS
TTGAAAGACGTTGAGCGAAA+AGG 0.498641 1_1:+77488361 None:intergenic
ATAGCAGAAACACAGAGAAC+CGG 0.505961 1_1:+77490339 None:intergenic
GACTCTTGTAATTCAAGCAC+TGG 0.508109 1_1:+77488229 None:intergenic
CAAGAGCCTCTTGCACTACT+CGG 0.508607 1_1:+77488984 None:intergenic
CAGCATCGGCTTGTTTAGAG+TGG 0.514280 1_1:-77488773 Msa0045550:exon
CGTCTTTCAAGTCTGGATGA+TGG 0.516448 1_1:-77488348 Msa0045550:three_prime_UTR
GCTTAATGGAGGACGGATTG+TGG 0.521790 1_1:-77488879 Msa0045550:CDS
CAAACGCATGGATAAATTGT+CGG 0.522854 1_1:+77490503 None:intergenic
TATATAATCTGAAATGGCTA+AGG 0.530526 1_1:-77489303 Msa0045550:CDS
TCCTGCTTGAGTTGAATCAC+TGG 0.531626 1_1:-77488698 Msa0045550:three_prime_UTR
GGGACAAACAATTGCAGTTG+TGG 0.531853 1_1:-77489425 Msa0045550:CDS
TCAATGCTTCCATATACATT+GGG 0.532052 1_1:+77489526 None:intergenic
GATTCATTGCTGGCAAGGAA+TGG 0.532598 1_1:-77488842 Msa0045550:CDS
AGCATCATTGGCCAAACGCA+TGG 0.533367 1_1:+77490491 None:intergenic
GTAAGACTTTGCGTCAGCAT+CGG 0.533646 1_1:-77488787 Msa0045550:CDS
GGACAAACAATTGCAGTTGT+GGG 0.535839 1_1:-77489424 Msa0045550:CDS
AACAGAGGATTGCAATTGCA+AGG 0.538231 1_1:-77489075 Msa0045550:CDS
ATGTAAGGAGCCAATCCAAA+AGG 0.539337 1_1:+77489640 None:intergenic
AGAGGTGTTGACTTAACTCC+AGG 0.540567 1_1:-77489103 Msa0045550:CDS
CGCAAAGTCTTACCAAAATG+AGG 0.541206 1_1:+77488797 None:intergenic
CCCATGATTCATTGCTGGCA+AGG 0.547459 1_1:-77488847 Msa0045550:CDS
TCCAATCTCATTACGTAGCA+TGG 0.549646 1_1:+77490551 None:intergenic
GCAAATCAATAATATACCAT+GGG 0.550588 1_1:+77488447 None:intergenic
TGTCAGGTGGAGGTTTGTAT+GGG 0.550672 1_1:-77488646 Msa0045550:three_prime_UTR
CAGTGAAGCTGAAATGAAAG+AGG 0.552289 1_1:-77489197 Msa0045550:CDS
CTTGTAATTCAAGCACTGGA+TGG 0.553563 1_1:+77488233 None:intergenic
ACCAGTGATTCAACTCAAGC+AGG 0.554437 1_1:+77488697 None:intergenic
GGAGGACGGATTGTGGAAGA+GGG 0.555500 1_1:-77488872 Msa0045550:CDS
GAGTATCGTAACCATGAGGC+AGG 0.561684 1_1:+77489137 None:intergenic
AGCATCGGCTTGTTTAGAGT+GGG 0.562737 1_1:-77488772 Msa0045550:exon
GACTAACGCTATTGTCCCCA+TGG 0.564513 1_1:-77488463 Msa0045550:three_prime_UTR
ATGCTTCCATATACATTGGG+TGG 0.566855 1_1:+77489529 None:intergenic
CCTTGCCAGCAATGAATCAT+GGG 0.567527 1_1:+77488847 None:intergenic
CATGGTTACGATACTCATGT+TGG 0.567908 1_1:-77489130 Msa0045550:CDS
ATTTCAGTCTCAAAGTCAGT+GGG 0.569124 1_1:-77489447 Msa0045550:CDS
AGAAGCATCTACTGCACTCA+AGG 0.571687 1_1:-77489704 Msa0045550:CDS
TAGGAAGAGGATACTGTAGC+AGG 0.571944 1_1:-77488584 Msa0045550:three_prime_UTR
TTCATTAGTAGCCTGCCTCA+TGG 0.572366 1_1:-77489148 Msa0045550:CDS
ATTGTCAACATGCCTCATCA+TGG 0.575720 1_1:+77488910 None:intergenic
ATGAAGCTTGGGTTGGCGCA+CGG 0.576803 1_1:-77488619 Msa0045550:three_prime_UTR
AGCAAATCAATAATATACCA+TGG 0.577793 1_1:+77488446 None:intergenic
GTCCAGCCGAGTAGTGCAAG+AGG 0.579102 1_1:-77488990 Msa0045550:CDS
GCACTGGAGAATAGCTCTTG+TGG 0.581228 1_1:-77490376 Msa0045550:CDS
CCTGTGAGCTATTAAAATAG+TGG 0.585902 1_1:+77488937 None:intergenic
AAATGGCTAAGGAGCCACCT+TGG 0.589919 1_1:-77489292 Msa0045550:CDS
TGCTACGTAATGAGATTGGA+TGG 0.590634 1_1:-77490548 Msa0045550:CDS
CTCACAGGGCTGCCATGATG+AGG 0.597095 1_1:-77488922 Msa0045550:CDS
GCATTGATAGGCATAGGAAG+AGG 0.606873 1_1:-77488597 Msa0045550:three_prime_UTR
GCTATTGTGACTCTTATACA+GGG 0.614313 1_1:-77488387 Msa0045550:three_prime_UTR
GATACTCATGTTGGAATGAG+AGG 0.616383 1_1:-77489121 Msa0045550:CDS
GGGAATGATGAAGCTTGGGT+TGG 0.619433 1_1:-77488626 Msa0045550:three_prime_UTR
AATTTCAGTCTCAAAGTCAG+TGG 0.623475 1_1:-77489448 Msa0045550:CDS
GAGGACGGATTGTGGAAGAG+GGG 0.632764 1_1:-77488871 Msa0045550:CDS
ACAGAGGATTGCAATTGCAA+GGG 0.633925 1_1:-77489074 Msa0045550:CDS
AATATAGTCGTGCTTAATGG+AGG 0.634372 1_1:-77488890 Msa0045550:CDS
TAGTCGTGCTTAATGGAGGA+CGG 0.634585 1_1:-77488886 Msa0045550:CDS
GCTTGTTTAGAGTGGGAGTG+TGG 0.636290 1_1:-77488765 Msa0045550:exon
TGCAGTGTACCAGAGTAGAA+GGG 0.640229 1_1:+77489750 None:intergenic
GATTGGATGGTATGATGATG+AGG 0.640417 1_1:-77490535 Msa0045550:CDS
ACCAGCACTTCAGGCCGAGT+AGG 0.641205 1_1:+77489478 None:intergenic
CGCACGGCATTGATAGGCAT+AGG 0.648839 1_1:-77488603 Msa0045550:three_prime_UTR
TTCAGTCTCAAAGTCAGTGG+GGG 0.649900 1_1:-77489445 Msa0045550:CDS
CATACAGGAAATGCACCGAA+AGG 0.654100 1_1:-77489956 Msa0045550:CDS
AAAGCCGAATGCAAAACCAA+TGG 0.667025 1_1:+77489801 None:intergenic
GTTCCTGCTGAACCAGACCA+AGG 0.675863 1_1:+77489275 None:intergenic
TAACTCCAGGACAGAAACAG+AGG 0.680518 1_1:-77489090 Msa0045550:CDS
GCTGTACAATGACAGGAAGG+TGG 0.693895 1_1:-77488426 Msa0045550:three_prime_UTR
CCTGCTGAACCAGACCAAGG+TGG 0.706368 1_1:+77489278 None:intergenic
TTTCAGTCTCAAAGTCAGTG+GGG 0.711519 1_1:-77489446 Msa0045550:CDS
CTATAGCTAATTATGTACAG+AGG 0.714199 1_1:+77488267 None:intergenic
TTTGCTGTACAATGACAGGA+AGG 0.724901 1_1:-77488429 Msa0045550:three_prime_UTR
CAAATCAATAATATACCATG+GGG 0.727883 1_1:+77488448 None:intergenic
ACATGAGTATCGTAACCATG+AGG 0.744929 1_1:+77489133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATACATTAATGAAT+AGG + chr1_1:77490324-77490343 None:intergenic 10.0%
!! TAAAACTATATAATCTGAAA+TGG - chr1_1:77489328-77489347 Msa0045550:CDS 15.0%
!!! AAAATATAAGTGTTTGTTTT+CGG + chr1_1:77490502-77490521 None:intergenic 15.0%
!!! CAATGAAAATTTTAAATGTC+AGG - chr1_1:77489975-77489994 Msa0045550:CDS 20.0%
!!! AAAGATAGAAATTTGAAGTT+TGG - chr1_1:77490090-77490109 Msa0045550:intron 20.0%
! CAGACTTTCTATATTTATAC+AGG - chr1_1:77488195-77488214 Msa0045550:three_prime_UTR 25.0%
!! TTGAAATTCATTTTCATCCA+TGG - chr1_1:77488449-77488468 Msa0045550:three_prime_UTR 25.0%
! AACATAAATGAGAATTTCCA+TGG + chr1_1:77488469-77488488 None:intergenic 25.0%
!! TTTTAACCTTGTAGAAATTG+TGG - chr1_1:77488638-77488657 Msa0045550:three_prime_UTR 25.0%
!!! TTGATTTTTGTTATCCTACT+CGG - chr1_1:77489145-77489164 Msa0045550:CDS 25.0%
!! TATATAATCTGAAATGGCTA+AGG - chr1_1:77489334-77489353 Msa0045550:CDS 25.0%
!! ATATATGATGTTTTCCCTTA+TGG + chr1_1:77489406-77489425 None:intergenic 25.0%
! TGTGAGTAATTGACTAATAT+TGG - chr1_1:77489896-77489915 Msa0045550:CDS 25.0%
!! TGAAAATTTTAAATGTCAGG+TGG - chr1_1:77489978-77489997 Msa0045550:CDS 25.0%
!! ATAGAAATTTGAAGTTTGGT+TGG - chr1_1:77490094-77490113 Msa0045550:intron 25.0%
! CAAATCAATAATATACCATG+GGG + chr1_1:77490192-77490211 None:intergenic 25.0%
! GCAAATCAATAATATACCAT+GGG + chr1_1:77490193-77490212 None:intergenic 25.0%
! AGCAAATCAATAATATACCA+TGG + chr1_1:77490194-77490213 None:intergenic 25.0%
! CATAATTAGCTATAGTTTAG+AGG - chr1_1:77490378-77490397 Msa0045550:CDS 25.0%
AACCACTCAAGAATATTACA+TGG + chr1_1:77488356-77488375 None:intergenic 30.0%
ATGTAATATTCTTGAGTGGT+TGG - chr1_1:77488355-77488374 Msa0045550:three_prime_UTR 30.0%
! CTTTCATCAGGATCAATTTT+AGG + chr1_1:77489075-77489094 None:intergenic 30.0%
TCAATGCTTCCATATACATT+GGG + chr1_1:77489114-77489133 None:intergenic 30.0%
GAGCACTATTATATCTTTGA+TGG - chr1_1:77489254-77489273 Msa0045550:CDS 30.0%
ATGGTTGTTGAGAAGATAAT+TGG + chr1_1:77489387-77489406 None:intergenic 30.0%
TTATCTTCTCAACAACCATA+AGG - chr1_1:77489388-77489407 Msa0045550:CDS 30.0%
TATCTTCTCAACAACCATAA+GGG - chr1_1:77489389-77489408 Msa0045550:CDS 30.0%
!!! CACTATTTTAATAGCTCACA+GGG - chr1_1:77489701-77489720 Msa0045550:CDS 30.0%
CAAAATGAGGTTGCATTAAT+CGG + chr1_1:77489830-77489849 None:intergenic 30.0%
! AAATTTTAAATGTCAGGTGG+AGG - chr1_1:77489981-77490000 Msa0045550:CDS 30.0%
CTATAGCTAATTATGTACAG+AGG + chr1_1:77490373-77490392 None:intergenic 30.0%
! AGTCACAAGTTTTCTTTTGT+TGG - chr1_1:77490427-77490446 Msa0045550:CDS 30.0%
CAAACGCATGGATAAATTGT+CGG + chr1_1:77488137-77488156 None:intergenic 35.0%
!!! GTTGTTGTTGCTTTTCTCAT+TGG - chr1_1:77488229-77488248 Msa0045550:three_prime_UTR 35.0%
AAAAGAGTAGATGCATACCT+GGG + chr1_1:77488326-77488345 None:intergenic 35.0%
TGCCATGTAATATTCTTGAG+TGG - chr1_1:77488351-77488370 Msa0045550:three_prime_UTR 35.0%
TGTGAATGACTTAACAATGC+TGG - chr1_1:77488550-77488569 Msa0045550:three_prime_UTR 35.0%
!! TGCATTTTGTGCTGGTAATA+AGG - chr1_1:77488750-77488769 Msa0045550:three_prime_UTR 35.0%
! TTGTGCTGGTAATAAGGTAA+TGG - chr1_1:77488756-77488775 Msa0045550:three_prime_UTR 35.0%
!! ATAAGGTAATGGAACTCTAC+AGG - chr1_1:77488767-77488786 Msa0045550:exon 35.0%
TTTAAGCAGAGCTTTCTTCA+TGG - chr1_1:77488808-77488827 Msa0045550:CDS 35.0%
! ATTTGCTACATTTGCACTTG+TGG - chr1_1:77488972-77488991 Msa0045550:CDS 35.0%
CTCAATGCTTCCATATACAT+TGG + chr1_1:77489115-77489134 None:intergenic 35.0%
AATTTCAGTCTCAAAGTCAG+TGG - chr1_1:77489189-77489208 Msa0045550:CDS 35.0%
ATTTCAGTCTCAAAGTCAGT+GGG - chr1_1:77489190-77489209 Msa0045550:CDS 35.0%
AGATATTATGATCCAGTTGC+TGG - chr1_1:77489279-77489298 Msa0045550:CDS 35.0%
! ACAAGATAGGTGCATTTTTC+AGG + chr1_1:77489593-77489612 None:intergenic 35.0%
! AAATGCACCTATCTTGTTGT+TGG - chr1_1:77489596-77489615 Msa0045550:CDS 35.0%
GCTCTTGACACTCTTATAAT+GGG - chr1_1:77489669-77489688 Msa0045550:CDS 35.0%
CCTGTGAGCTATTAAAATAG+TGG + chr1_1:77489703-77489722 None:intergenic 35.0%
!!! CCACTATTTTAATAGCTCAC+AGG - chr1_1:77489700-77489719 Msa0045550:CDS 35.0%
GACAATATAGTCGTGCTTAA+TGG - chr1_1:77489744-77489763 Msa0045550:CDS 35.0%
AATATAGTCGTGCTTAATGG+AGG - chr1_1:77489747-77489766 Msa0045550:CDS 35.0%
! CGATTAATGCAACCTCATTT+TGG - chr1_1:77489828-77489847 Msa0045550:CDS 35.0%
!! TTTGAAGTTTGGTTGGTTTG+AGG - chr1_1:77490101-77490120 Msa0045550:intron 35.0%
!! TTTGGTTGGTTTGAGGATTT+GGG - chr1_1:77490108-77490127 Msa0045550:intron 35.0%
! TTGTGGATGCTGAATTCTTT+TGG - chr1_1:77490131-77490150 Msa0045550:intron 35.0%
!! TTGATTTGCTGTACAATGAC+AGG - chr1_1:77490204-77490223 Msa0045550:intron 35.0%
AGCTATTGTGACTCTTATAC+AGG - chr1_1:77490249-77490268 Msa0045550:intron 35.0%
GCTATTGTGACTCTTATACA+GGG - chr1_1:77490250-77490269 Msa0045550:intron 35.0%
! CACAAGTTTTCTTTTGTTGG+TGG - chr1_1:77490430-77490449 Msa0045550:CDS 35.0%
!! AAGTTTTCTTTTGTTGGTGG+AGG - chr1_1:77490433-77490452 Msa0045550:CDS 35.0%
TCCAATCTCATTACGTAGCA+TGG + chr1_1:77488089-77488108 None:intergenic 40.0%
TGCTACGTAATGAGATTGGA+TGG - chr1_1:77488089-77488108 Msa0045550:three_prime_UTR 40.0%
! GATTGGATGGTATGATGATG+AGG - chr1_1:77488102-77488121 Msa0045550:three_prime_UTR 40.0%
CGACAATTTATCCATGCGTT+TGG - chr1_1:77488135-77488154 Msa0045550:three_prime_UTR 40.0%
ATAGCAGAAACACAGAGAAC+CGG + chr1_1:77488301-77488320 None:intergenic 40.0%
CAAAAGAGTAGATGCATACC+TGG + chr1_1:77488327-77488346 None:intergenic 40.0%
! CAGGTATGCATCTACTCTTT+TGG - chr1_1:77488325-77488344 Msa0045550:three_prime_UTR 40.0%
! AAATCGCTGCATTTTGCTAG+AGG + chr1_1:77488430-77488449 None:intergenic 40.0%
TTTGCATAATGCACGTGCTA+AGG - chr1_1:77488608-77488627 Msa0045550:three_prime_UTR 40.0%
AGCAAGCCACAATTTCTACA+AGG + chr1_1:77488647-77488666 None:intergenic 40.0%
! TTGTAGAAATTGTGGCTTGC+TGG - chr1_1:77488646-77488665 Msa0045550:three_prime_UTR 40.0%
CAAGAACCAAAGATGCCTTT+CGG + chr1_1:77488699-77488718 None:intergenic 40.0%
! ACTGTTGTTGCATTTTGTGC+TGG - chr1_1:77488742-77488761 Msa0045550:three_prime_UTR 40.0%
!! TTTCTTCATGGATTGGCCAT+TGG - chr1_1:77488820-77488839 Msa0045550:CDS 40.0%
!!! TTGGCCATTGGTTTTGCATT+CGG - chr1_1:77488832-77488851 Msa0045550:CDS 40.0%
AAAGCCGAATGCAAAACCAA+TGG + chr1_1:77488839-77488858 None:intergenic 40.0%
ATGTAAGGAGCCAATCCAAA+AGG + chr1_1:77489000-77489019 None:intergenic 40.0%
TTACGTCGCTTGAGTATGTA+AGG + chr1_1:77489015-77489034 None:intergenic 40.0%
ATATACATTGGGTGGCTTCA+AGG + chr1_1:77489103-77489122 None:intergenic 40.0%
TTGAAGCCACCCAATGTATA+TGG - chr1_1:77489102-77489121 Msa0045550:CDS 40.0%
ATGCTTCCATATACATTGGG+TGG + chr1_1:77489111-77489130 None:intergenic 40.0%
TTGCTTAATACCAGCACTTC+AGG + chr1_1:77489171-77489190 None:intergenic 40.0%
TTTCAGTCTCAAAGTCAGTG+GGG - chr1_1:77489191-77489210 Msa0045550:CDS 40.0%
GGACAAACAATTGCAGTTGT+GGG - chr1_1:77489213-77489232 Msa0045550:CDS 40.0%
CTCTTTCATTTCAGCTTCAC+TGG + chr1_1:77489442-77489461 None:intergenic 40.0%
CAGTGAAGCTGAAATGAAAG+AGG - chr1_1:77489440-77489459 Msa0045550:CDS 40.0%
! ACATGAGTATCGTAACCATG+AGG + chr1_1:77489507-77489526 None:intergenic 40.0%
CATGGTTACGATACTCATGT+TGG - chr1_1:77489507-77489526 Msa0045550:CDS 40.0%
GATACTCATGTTGGAATGAG+AGG - chr1_1:77489516-77489535 Msa0045550:CDS 40.0%
AACAGAGGATTGCAATTGCA+AGG - chr1_1:77489562-77489581 Msa0045550:CDS 40.0%
ACAGAGGATTGCAATTGCAA+GGG - chr1_1:77489563-77489582 Msa0045550:CDS 40.0%
GCTTCATCCAACAACAAGAT+AGG + chr1_1:77489606-77489625 None:intergenic 40.0%
GGCTCTTGACACTCTTATAA+TGG - chr1_1:77489668-77489687 Msa0045550:CDS 40.0%
ATTGTCAACATGCCTCATCA+TGG + chr1_1:77489730-77489749 None:intergenic 40.0%
CGCAAAGTCTTACCAAAATG+AGG + chr1_1:77489843-77489862 None:intergenic 40.0%
TGTATGGGAATGATGAAGCT+TGG - chr1_1:77490006-77490025 Msa0045550:intron 40.0%
GTATGGGAATGATGAAGCTT+GGG - chr1_1:77490007-77490026 Msa0045550:intron 40.0%
!! GTTTGGTTGGTTTGAGGATT+TGG - chr1_1:77490107-77490126 Msa0045550:intron 40.0%
! TTTGCTGTACAATGACAGGA+AGG - chr1_1:77490208-77490227 Msa0045550:intron 40.0%
TTGAAAGACGTTGAGCGAAA+AGG + chr1_1:77490279-77490298 None:intergenic 40.0%
!! CTTGTAATTCAAGCACTGGA+TGG + chr1_1:77490407-77490426 None:intergenic 40.0%
GACTCTTGTAATTCAAGCAC+TGG + chr1_1:77490411-77490430 None:intergenic 40.0%
!! TTTTCTTTTGTTGGTGGAGG+TGG - chr1_1:77490436-77490455 Msa0045550:CDS 40.0%
!! TTTCTTTTGTTGGTGGAGGT+GGG - chr1_1:77490437-77490456 Msa0045550:CDS 40.0%
! TGTTTTCGGCAAAATACACG+TGG + chr1_1:77490488-77490507 None:intergenic 40.0%
GCCATGCTACGTAATGAGAT+TGG - chr1_1:77488085-77488104 Msa0045550:three_prime_UTR 45.0%
TCGCACAAACGTAGCATCAT+TGG + chr1_1:77488161-77488180 None:intergenic 45.0%
!! TCATTGGTGTTTTGCTGCAC+TGG - chr1_1:77488245-77488264 Msa0045550:three_prime_UTR 45.0%
!! TGTGGCTTTAGCAACACTTC+CGG - chr1_1:77488279-77488298 Msa0045550:three_prime_UTR 45.0%
!!! TGTGGCTTGCTGGTTTTTCA+AGG - chr1_1:77488656-77488675 Msa0045550:three_prime_UTR 45.0%
!!! GTGGCTTGCTGGTTTTTCAA+GGG - chr1_1:77488657-77488676 Msa0045550:three_prime_UTR 45.0%
!!! TGGCTTGCTGGTTTTTCAAG+GGG - chr1_1:77488658-77488677 Msa0045550:three_prime_UTR 45.0%
!!! TGGTTTTTCAAGGGGCATAC+AGG - chr1_1:77488666-77488685 Msa0045550:three_prime_UTR 45.0%
CATACAGGAAATGCACCGAA+AGG - chr1_1:77488681-77488700 Msa0045550:three_prime_UTR 45.0%
!! AATGCACCGAAAGGCATCTT+TGG - chr1_1:77488690-77488709 Msa0045550:three_prime_UTR 45.0%
GCAGAGCTTTCTTCATGGAT+TGG - chr1_1:77488813-77488832 Msa0045550:CDS 45.0%
CTTGTAATGCCCTTCTACTC+TGG - chr1_1:77488878-77488897 Msa0045550:CDS 45.0%
TGCAGTGTACCAGAGTAGAA+GGG + chr1_1:77488890-77488909 None:intergenic 45.0%
TTGCAGTGTACCAGAGTAGA+AGG + chr1_1:77488891-77488910 None:intergenic 45.0%
!! AGAAGCATCTACTGCACTCA+AGG - chr1_1:77488933-77488952 Msa0045550:CDS 45.0%
! TTTGCACTTGTGGAGCCTTT+TGG - chr1_1:77488982-77489001 Msa0045550:CDS 45.0%
! ACTTGTGGAGCCTTTTGGAT+TGG - chr1_1:77488987-77489006 Msa0045550:CDS 45.0%
TTCAAGGCTGAGCTTTCATC+AGG + chr1_1:77489087-77489106 None:intergenic 45.0%
TTCAGTCTCAAAGTCAGTGG+GGG - chr1_1:77489192-77489211 Msa0045550:CDS 45.0%
GGGACAAACAATTGCAGTTG+TGG - chr1_1:77489212-77489231 Msa0045550:CDS 45.0%
ATTGCAGTTGTGGGAGTTTC+AGG - chr1_1:77489222-77489241 Msa0045550:CDS 45.0%
TTGCAGTTGTGGGAGTTTCA+GGG - chr1_1:77489223-77489242 Msa0045550:CDS 45.0%
AGTAAAACTTGGCCAGCAAC+TGG + chr1_1:77489294-77489313 None:intergenic 45.0%
! AGTTGCTGGCCAAGTTTTAC+TGG - chr1_1:77489293-77489312 Msa0045550:CDS 45.0%
! CTGGCCAAGTTTTACTGGAT+GGG - chr1_1:77489298-77489317 Msa0045550:CDS 45.0%
! CCAAGTTTTACTGGATGGGA+GGG - chr1_1:77489302-77489321 Msa0045550:CDS 45.0%
AGCTTCACTGGCATTATGTC+TGG + chr1_1:77489430-77489449 None:intergenic 45.0%
TTCATTAGTAGCCTGCCTCA+TGG - chr1_1:77489489-77489508 Msa0045550:CDS 45.0%
!! AGAGGTGTTGACTTAACTCC+AGG - chr1_1:77489534-77489553 Msa0045550:CDS 45.0%
TAACTCCAGGACAGAAACAG+AGG - chr1_1:77489547-77489566 Msa0045550:CDS 45.0%
TAGTCGTGCTTAATGGAGGA+CGG - chr1_1:77489751-77489770 Msa0045550:CDS 45.0%
CCTTGCCAGCAATGAATCAT+GGG + chr1_1:77489793-77489812 None:intergenic 45.0%
TCCTTGCCAGCAATGAATCA+TGG + chr1_1:77489794-77489813 None:intergenic 45.0%
GATTCATTGCTGGCAAGGAA+TGG - chr1_1:77489795-77489814 Msa0045550:CDS 45.0%
GTAAGACTTTGCGTCAGCAT+CGG - chr1_1:77489850-77489869 Msa0045550:CDS 45.0%
!! AGCATCGGCTTGTTTAGAGT+GGG - chr1_1:77489865-77489884 Msa0045550:CDS 45.0%
!! TCCTGCTTGAGTTGAATCAC+TGG - chr1_1:77489939-77489958 Msa0045550:CDS 45.0%
ACCAGTGATTCAACTCAAGC+AGG + chr1_1:77489943-77489962 None:intergenic 45.0%
ATGTCAGGTGGAGGTTTGTA+TGG - chr1_1:77489990-77490009 Msa0045550:intron 45.0%
TGTCAGGTGGAGGTTTGTAT+GGG - chr1_1:77489991-77490010 Msa0045550:intron 45.0%
! GCATTGATAGGCATAGGAAG+AGG - chr1_1:77490040-77490059 Msa0045550:intron 45.0%
TAGGAAGAGGATACTGTAGC+AGG - chr1_1:77490053-77490072 Msa0045550:intron 45.0%
!! TGGTTTGAGGATTTGGGTTG+TGG - chr1_1:77490114-77490133 Msa0045550:intron 45.0%
! CGTCTTTCAAGTCTGGATGA+TGG - chr1_1:77490289-77490308 Msa0045550:intron 45.0%
!! TTCTTTTGTTGGTGGAGGTG+GGG - chr1_1:77490438-77490457 Msa0045550:CDS 45.0%
AGCATCATTGGCCAAACGCA+TGG + chr1_1:77488149-77488168 None:intergenic 50.0%
GCACTGGAGAATAGCTCTTG+TGG - chr1_1:77488261-77488280 Msa0045550:three_prime_UTR 50.0%
! CTGTGTTTCTGCTATTGCCC+AGG - chr1_1:77488306-77488325 Msa0045550:three_prime_UTR 50.0%
! GCTGGCCAAGTTTTACTGGA+TGG - chr1_1:77489297-77489316 Msa0045550:CDS 50.0%
! GCCAAGTTTTACTGGATGGG+AGG - chr1_1:77489301-77489320 Msa0045550:CDS 50.0%
CCCTCCCATCCAGTAAAACT+TGG + chr1_1:77489305-77489324 None:intergenic 50.0%
AAATGGCTAAGGAGCCACCT+TGG - chr1_1:77489345-77489364 Msa0045550:CDS 50.0%
! GAGTATCGTAACCATGAGGC+AGG + chr1_1:77489503-77489522 None:intergenic 50.0%
!! GCAATCCTCTGTTTCTGTCC+TGG + chr1_1:77489555-77489574 None:intergenic 50.0%
CAAGAGCCTCTTGCACTACT+CGG + chr1_1:77489656-77489675 None:intergenic 50.0%
!! GCTTAATGGAGGACGGATTG+TGG - chr1_1:77489758-77489777 Msa0045550:CDS 50.0%
CCCATGATTCATTGCTGGCA+AGG - chr1_1:77489790-77489809 Msa0045550:CDS 50.0%
!! CAGCATCGGCTTGTTTAGAG+TGG - chr1_1:77489864-77489883 Msa0045550:CDS 50.0%
! GCTTGTTTAGAGTGGGAGTG+TGG - chr1_1:77489872-77489891 Msa0045550:CDS 50.0%
GGGAATGATGAAGCTTGGGT+TGG - chr1_1:77490011-77490030 Msa0045550:intron 50.0%
GACTAACGCTATTGTCCCCA+TGG - chr1_1:77490174-77490193 Msa0045550:intron 50.0%
GCTGTACAATGACAGGAAGG+TGG - chr1_1:77490211-77490230 Msa0045550:intron 50.0%
! CGCTCAACGTCTTTCAAGTC+TGG - chr1_1:77490282-77490301 Msa0045550:intron 50.0%
!! TCTTTTGTTGGTGGAGGTGG+GGG - chr1_1:77490439-77490458 Msa0045550:CDS 50.0%
GTTGTGGGAGTTTCAGGGTC+AGG - chr1_1:77489228-77489247 Msa0045550:CDS 55.0%
GTTCCTGCTGAACCAGACCA+AGG + chr1_1:77489365-77489384 None:intergenic 55.0%
!! TGGAGGACGGATTGTGGAAG+AGG - chr1_1:77489764-77489783 Msa0045550:CDS 55.0%
!! GGAGGACGGATTGTGGAAGA+GGG - chr1_1:77489765-77489784 Msa0045550:CDS 55.0%
!! GAGGACGGATTGTGGAAGAG+GGG - chr1_1:77489766-77489785 Msa0045550:CDS 55.0%
GGGGACCCATGATTCATTGC+TGG - chr1_1:77489785-77489804 Msa0045550:CDS 55.0%
!! ATGAAGCTTGGGTTGGCGCA+CGG - chr1_1:77490018-77490037 Msa0045550:intron 55.0%
!! CGCACGGCATTGATAGGCAT+AGG - chr1_1:77490034-77490053 Msa0045550:intron 55.0%
TCCTACTCGGCCTGAAGTGC+TGG - chr1_1:77489158-77489177 Msa0045550:CDS 60.0%
ACCAGCACTTCAGGCCGAGT+AGG + chr1_1:77489162-77489181 None:intergenic 60.0%
GCTAAGGAGCCACCTTGGTC+TGG - chr1_1:77489350-77489369 Msa0045550:CDS 60.0%
CCTGCTGAACCAGACCAAGG+TGG + chr1_1:77489362-77489381 None:intergenic 60.0%
! CCACCTTGGTCTGGTTCAGC+AGG - chr1_1:77489359-77489378 Msa0045550:CDS 60.0%
GTCCAGCCGAGTAGTGCAAG+AGG - chr1_1:77489647-77489666 Msa0045550:CDS 60.0%
AGCCTCTTGCACTACTCGGC+TGG + chr1_1:77489652-77489671 None:intergenic 60.0%
CTCACAGGGCTGCCATGATG+AGG - chr1_1:77489715-77489734 Msa0045550:CDS 60.0%
!! GGTTGGCGCACGGCATTGAT+AGG - chr1_1:77490028-77490047 Msa0045550:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 77488079 77490580 77488079 ID=Msa0045550;Name=Msa0045550
chr1_1 mRNA 77488079 77490580 77488079 ID=Msa0045550-mRNA-1;Parent=Msa0045550;Name=Msa0045550-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|1|0.5|1|1|1|2|699|492
chr1_1 exon 77488079 77490007 77488079 ID=Msa0045550-mRNA-1:exon:26548;Parent=Msa0045550-mRNA-1
chr1_1 exon 77490332 77490580 77490332 ID=Msa0045550-mRNA-1:exon:26547;Parent=Msa0045550-mRNA-1
chr1_1 CDS 77490332 77490580 77490332 ID=Msa0045550-mRNA-1:cds;Parent=Msa0045550-mRNA-1
chr1_1 CDS 77488778 77490007 77488778 ID=Msa0045550-mRNA-1:cds;Parent=Msa0045550-mRNA-1
chr1_1 three_prime_UTR 77488079 77488777 77488079 ID=Msa0045550-mRNA-1:three_prime_utr;Parent=Msa0045550-mRNA-1
Gene Sequence

>Msa0045550

ATGGCAGCCATGCTACGTAATGAGATTGGATGGTATGATGATGAGGAAAACAGTGCCGACAATTTATCCATGCGTTTGGCCAATGATGCTACGTTTGTGCGAGCTGCTTTCAGCAACAGACTTTCTATATTTATACAGGACATTGCTGCAGTTGTTGTTGCTTTTCTCATTGGTGTTTTGCTGCACTGGAGAATAGCTCTTGTGGCTTTAGCAACACTTCCGGTTCTCTGTGTTTCTGCTATTGCCCAGAAATTGTGGCTTGCTGGTTTTTCAAGGGGCATACAGGAAATGCACCGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTTGCATTTTGTGCTGGTAATAAGGTAATGGAACTCTACAGGCTGCAGTTAAATAGAATATTTAAGCAGAGCTTTCTTCATGGATTGGCCATTGGTTTTGCATTCGGCTTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTCTGGTACACTGCAATATGTATAAACAAGAGTTATGTAGAAGCATCTACTGCACTCAAGGAGTACATTGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTCAAGCGACGTAAATCTCTCATTTCAGTGTTTGAAATTATAGATCGCGTGCCTAAAATTGATCCTGATGAAAGCTCAGCCTTGAAGCCACCCAATGTATATGGAAGCATTGAGCTGAAAAATGTTGATTTTTGTTATCCTACTCGGCCTGAAGTGCTGGTATTAAGCAATTTCAGTCTCAAAGTCAGTGGGGGACAAACAATTGCAGTTGTGGGAGTTTCAGGGTCAGGAAAGAGCACTATTATATCTTTGATGGAGAGATATTATGATCCAGTTGCTGGCCAAGTTTTACTGGATGGGAGGGATTTAAAACTATATAATCTGAAATGGCTAAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCAATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCCAGACATAATGCCAGTGAAGCTGAAATGAAAGAGGCAGCAAGAATAGCTAATGCTCATCATTTCATTAGTAGCCTGCCTCATGGTTACGATACTCATGTTGGAATGAGAGGTGTTGACTTAACTCCAGGACAGAAACAGAGGATTGCAATTGCAAGGGTAATCCTGAAAAATGCACCTATCTTGTTGTTGGATGAAGCTAGCTCGTCAATTGAATCAGAGTCCAGCCGAGTAGTGCAAGAGGCTCTTGACACTCTTATAATGGGAAACAAGACCACTATTTTAATAGCTCACAGGGCTGCCATGATGAGGCATGTTGACAATATAGTCGTGCTTAATGGAGGACGGATTGTGGAAGAGGGGACCCATGATTCATTGCTGGCAAGGAATGGTTTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGACTTTGCGTCAGCATCGGCTTGTTTAG
Protein sequence

>Msa0045550

MAAMLRNEIGWYDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDIAAVVVAFLIGVLLHWRIALVALATLPVLCVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLNRIFKQSFLHGLAIGFAFGFSQFLLFACNALLLWYTAICINKSYVEASTALKEYIVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDESSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVSGGQTIAVVGVSGSGKSTIISLMERYYDPVAGQVLLDGRDLKLYNLKWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVILKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLLARNGLYVRLMQPHFGKTLRQHRLV*