Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054800 | XP_003588878.1 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1006 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054800 | sp|Q5FV41|FBT2_ARATH | 66.667 | 471 | 154 | 2 | 33 | 501 | 28 | 497 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054800 | G7I897 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1006 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006090 | Msa0054800 | 0.837365 | 5.426653e-57 | -8.615850e-47 |
| Msa0054800 | Msa0193540 | 0.823960 | 1.045350e-53 | -8.615850e-47 |
| Msa0054800 | Msa0236070 | 0.808913 | 2.451144e-50 | -8.615850e-47 |
| Msa0054800 | Msa0274630 | 0.829881 | 4.015663e-55 | -8.615850e-47 |
| Msa0054800 | Msa0275750 | 0.806397 | 8.389475e-50 | -8.615850e-47 |
| Msa0054800 | Msa0314060 | 0.816309 | 5.910871e-52 | -8.615850e-47 |
| Msa0054800 | Msa0316210 | 0.824905 | 6.264043e-54 | -8.615850e-47 |
| Msa0054800 | Msa0423270 | 0.805101 | 1.570127e-49 | -8.615850e-47 |
| Msa0054800 | Msa0469350 | 0.803279 | 3.760636e-49 | -8.615850e-47 |
| Msa0054800 | Msa0750000 | 0.810528 | 1.101965e-50 | -8.615850e-47 |
| Msa0054800 | Msa1359580 | 0.920885 | 7.251227e-88 | -8.615850e-47 |
| Msa0054800 | Msa1403650 | 0.925712 | 1.264623e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054800 | MtrunA17_Chr1g0150001 | 98.016 | 504 | 9 | 1 | 1 | 503 | 1 | 504 | 0.0 | 1006 |
| Msa0054800 | MtrunA17_Chr1g0150041 | 42.804 | 271 | 118 | 2 | 35 | 302 | 27 | 263 | 3.38e-69 | 223 |
| Msa0054800 | MtrunA17_Chr1g0150031 | 51.531 | 196 | 89 | 1 | 302 | 497 | 2 | 191 | 1.16e-64 | 208 |
| Msa0054800 | MtrunA17_Chr1g0205221 | 33.333 | 426 | 259 | 9 | 40 | 447 | 93 | 511 | 2.89e-54 | 191 |
| Msa0054800 | MtrunA17_Chr3g0079271 | 27.792 | 403 | 277 | 5 | 74 | 467 | 123 | 520 | 1.62e-30 | 125 |
| Msa0054800 | MtrunA17_Chr2g0293351 | 26.209 | 393 | 269 | 8 | 75 | 454 | 46 | 430 | 3.56e-27 | 114 |
| Msa0054800 | MtrunA17_Chr3g0098661 | 33.333 | 198 | 127 | 2 | 266 | 462 | 295 | 488 | 7.16e-27 | 113 |
| Msa0054800 | MtrunA17_Chr3g0098661 | 27.143 | 210 | 142 | 5 | 37 | 240 | 3 | 207 | 2.58e-15 | 78.6 |
| Msa0054800 | MtrunA17_Chr2g0293371 | 26.567 | 335 | 205 | 9 | 139 | 454 | 28 | 340 | 1.39e-15 | 78.2 |
| Msa0054800 | MtrunA17_Chr2g0293361 | 28.177 | 181 | 125 | 2 | 277 | 454 | 57 | 235 | 3.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054800 | AT5G25050.1 | 66.667 | 471 | 154 | 2 | 33 | 501 | 28 | 497 | 0.0 | 659 |
| Msa0054800 | AT1G79710.2 | 55.734 | 497 | 216 | 3 | 1 | 497 | 1 | 493 | 0.0 | 591 |
| Msa0054800 | AT1G79710.1 | 55.734 | 497 | 216 | 3 | 1 | 497 | 1 | 493 | 0.0 | 591 |
| Msa0054800 | AT5G25040.4 | 57.228 | 505 | 194 | 7 | 2 | 501 | 3 | 490 | 0.0 | 577 |
| Msa0054800 | AT5G25040.2 | 54.528 | 530 | 194 | 8 | 2 | 501 | 3 | 515 | 0.0 | 564 |
| Msa0054800 | AT5G25040.1 | 58.295 | 434 | 167 | 4 | 2 | 432 | 3 | 425 | 3.91e-179 | 511 |
| Msa0054800 | AT1G79710.3 | 56.140 | 399 | 174 | 1 | 1 | 399 | 1 | 398 | 6.03e-170 | 485 |
| Msa0054800 | AT5G25040.3 | 56.331 | 387 | 155 | 4 | 2 | 385 | 3 | 378 | 1.89e-153 | 442 |
| Msa0054800 | AT5G25040.5 | 60.511 | 352 | 128 | 4 | 152 | 501 | 1 | 343 | 1.57e-149 | 431 |
| Msa0054800 | AT5G10820.1 | 48.571 | 455 | 228 | 2 | 13 | 464 | 23 | 474 | 4.39e-143 | 421 |
| Msa0054800 | AT2G32040.2 | 32.944 | 428 | 265 | 10 | 62 | 477 | 6 | 423 | 1.38e-48 | 173 |
| Msa0054800 | AT2G32040.1 | 32.723 | 437 | 271 | 10 | 53 | 477 | 129 | 554 | 3.76e-48 | 175 |
| Msa0054800 | AT5G54860.1 | 25.873 | 487 | 294 | 9 | 37 | 462 | 3 | 483 | 1.02e-44 | 164 |
| Msa0054800 | AT1G04570.1 | 27.861 | 402 | 270 | 8 | 74 | 465 | 109 | 500 | 9.06e-28 | 117 |
| Msa0054800 | AT2G33280.1 | 27.273 | 407 | 270 | 8 | 74 | 465 | 106 | 501 | 1.60e-27 | 116 |
| Msa0054800 | AT2G33280.3 | 27.475 | 404 | 267 | 8 | 77 | 465 | 1 | 393 | 6.18e-27 | 113 |
| Msa0054800 | AT1G04570.2 | 30.769 | 208 | 137 | 3 | 260 | 465 | 150 | 352 | 2.65e-21 | 96.3 |
| Msa0054800 | AT2G33280.2 | 29.279 | 222 | 146 | 4 | 246 | 465 | 107 | 319 | 7.58e-18 | 85.5 |
| Msa0054800 | AT1G64890.1 | 23.515 | 421 | 297 | 8 | 46 | 456 | 19 | 424 | 4.85e-15 | 77.8 |
Find 105 sgRNAs with CRISPR-Local
Find 322 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTGTGTTGGCAATTT+TGG | 0.063315 | 1_2:-9494830 | Msa0054800:CDS |
| CTTGGATTGTTAAGCCTTTA+TGG | 0.130713 | 1_2:-9496074 | Msa0054800:CDS |
| GGTATAATATTGCTCCTAAA+AGG | 0.175539 | 1_2:+9492641 | None:intergenic |
| TCCAGCTGGACTTATAATTT+TGG | 0.227795 | 1_2:-9494486 | Msa0054800:CDS |
| AGGGATGTTTGATCTTATTT+TGG | 0.228694 | 1_2:-9492551 | Msa0054800:CDS |
| TCTTCTATTGGTGCACTATT+AGG | 0.233671 | 1_2:-9494685 | Msa0054800:CDS |
| TTTGGAGTAGTTGTTGTTTA+TGG | 0.240305 | 1_2:-9496213 | Msa0054800:CDS |
| TTGATGGTTGCAGGTTTATT+AGG | 0.248071 | 1_2:-9494892 | Msa0054800:intron |
| TTGGATTGTTAAGCCTTTAT+GGG | 0.253679 | 1_2:-9496073 | Msa0054800:CDS |
| GAACAAAGTTTGATAATCTT+TGG | 0.261678 | 1_2:-9492291 | Msa0054800:CDS |
| GGCATCTTTGTTCACCTTAT+AGG | 0.269657 | 1_2:-9494649 | Msa0054800:CDS |
| CAGTTGCTCTATGGTCTATC+AGG | 0.276942 | 1_2:-9492571 | Msa0054800:CDS |
| AGTCAAAGGGTGTTAGAATA+TGG | 0.282434 | 1_2:-9496302 | Msa0054800:CDS |
| GGTTTAGGTGGTGCTCTTGC+TGG | 0.292167 | 1_2:-9496180 | Msa0054800:CDS |
| GGAAGAAGAATGAAAGAGTT+AGG | 0.300985 | 1_2:+9492196 | None:intergenic |
| TGCCGGCATCCACAAAGTTT+TGG | 0.309039 | 1_2:+9494153 | None:intergenic |
| GGCTAACCATAGGGCCTATA+AGG | 0.323121 | 1_2:+9494635 | None:intergenic |
| AAGATTATCAAACTTTGTTC+TGG | 0.328960 | 1_2:+9492294 | None:intergenic |
| CATTCAGAGACTTACTCTTT+TGG | 0.332958 | 1_2:-9492597 | Msa0054800:CDS |
| AATCCGGTATACCAAACTTT+AGG | 0.344820 | 1_2:+9492515 | None:intergenic |
| AGCTCAAAGCTTTGTCCATC+TGG | 0.346803 | 1_2:-9492418 | Msa0054800:CDS |
| CTGGACTTCTTTCATCATCA+TGG | 0.374263 | 1_2:-9492351 | Msa0054800:CDS |
| TATGGAATAAGTCAAGGTTT+AGG | 0.377756 | 1_2:-9496195 | Msa0054800:CDS |
| GCCTTAACAGCAGGGAGTGC+TGG | 0.387976 | 1_2:-9494808 | Msa0054800:CDS |
| TGTAGTCCACATAGCCTTGC+CGG | 0.387979 | 1_2:+9494136 | None:intergenic |
| CTTTGTCCATCTGGTATTGA+AGG | 0.389296 | 1_2:-9492409 | Msa0054800:CDS |
| AGAAACCAAGGATGTTGAAT+TGG | 0.391325 | 1_2:-9492131 | Msa0054800:CDS |
| GGTGGTGCTCTTGCTGGTGT+TGG | 0.393991 | 1_2:-9496174 | Msa0054800:CDS |
| CTGGAATTACATCTATTCCT+TGG | 0.397255 | 1_2:-9496092 | Msa0054800:CDS |
| TCCAGCACTCCCTGCTGTTA+AGG | 0.406873 | 1_2:+9494807 | None:intergenic |
| ACCAATAAAACATTCCTTCA+AGG | 0.408629 | 1_2:+9494045 | None:intergenic |
| ATGAGATTGAACCTAAAGTT+TGG | 0.410807 | 1_2:-9492526 | Msa0054800:CDS |
| TGGACTTCTTTCATCATCAT+GGG | 0.415817 | 1_2:-9492350 | Msa0054800:CDS |
| AATCTAGTACTACCCTTTCA+AGG | 0.416214 | 1_2:+9496491 | None:intergenic |
| CTATTAGGATTCTCTATTAG+TGG | 0.425299 | 1_2:-9494670 | Msa0054800:CDS |
| CTAGGTGCACCAAAACTTTG+TGG | 0.428219 | 1_2:-9494162 | Msa0054800:intron |
| CGTAATCCTTTAGAGCGTAT+TGG | 0.433360 | 1_2:+9492620 | None:intergenic |
| CAAATCCCTCTGATATTACA+TGG | 0.434024 | 1_2:+9491986 | None:intergenic |
| TTTCTTCCACAGGAAAGTAT+AGG | 0.435044 | 1_2:-9492694 | Msa0054800:intron |
| CTGAGTTTGAATATCCTTGA+AGG | 0.437719 | 1_2:-9494059 | Msa0054800:CDS |
| TCAAATACCTGTGAGAAAGA+TGG | 0.438222 | 1_2:+9494002 | None:intergenic |
| TGTTCACCTTATAGGCCCTA+TGG | 0.452835 | 1_2:-9494641 | Msa0054800:intron |
| CTTTCATCATCATGGGGTGG+TGG | 0.454756 | 1_2:-9492343 | Msa0054800:CDS |
| AGACACCAATTCAACATCCT+TGG | 0.456982 | 1_2:+9492126 | None:intergenic |
| ATCACAACAAAGACGTAATC+CGG | 0.462520 | 1_2:+9492499 | None:intergenic |
| CACCAAAACTTTGTGGATGC+CGG | 0.471200 | 1_2:-9494155 | Msa0054800:CDS |
| GTATAATATTGCTCCTAAAA+GGG | 0.472990 | 1_2:+9492642 | None:intergenic |
| ACCAAAATTATAAGTCCAGC+TGG | 0.476055 | 1_2:+9494485 | None:intergenic |
| GAACCTAAAGTTTGGTATAC+CGG | 0.482350 | 1_2:-9492518 | Msa0054800:CDS |
| ATTATACCAATACGCTCTAA+AGG | 0.485902 | 1_2:-9492626 | Msa0054800:CDS |
| TGCTATCAAGAGAAATGCAT+TGG | 0.489196 | 1_2:-9496245 | Msa0054800:CDS |
| CAAATACCTGTGAGAAAGAT+GGG | 0.493656 | 1_2:+9494003 | None:intergenic |
| CATTGAAGAATCAAGATGTA+TGG | 0.496871 | 1_2:-9494115 | Msa0054800:CDS |
| AGTTCAACCTTCTGAAGCAC+AGG | 0.498974 | 1_2:-9496121 | Msa0054800:CDS |
| TCTCTTGTACACAGTGTTGA+TGG | 0.499772 | 1_2:-9492106 | Msa0054800:CDS |
| AAATGATTACAATCCTTGAA+AGG | 0.501421 | 1_2:-9496504 | Msa0054800:five_prime_UTR |
| CTGTGCAACACATGCATCAA+TGG | 0.501476 | 1_2:+9494765 | None:intergenic |
| TCTTCTTCCAAAAGAAAATG+TGG | 0.503749 | 1_2:-9492182 | Msa0054800:CDS |
| TCTGAAGCACAGGTTTATGC+TGG | 0.507686 | 1_2:-9496111 | Msa0054800:CDS |
| AATGATTACAATCCTTGAAA+GGG | 0.510349 | 1_2:-9496503 | Msa0054800:five_prime_UTR |
| TGTCAGAAGCAAGGGAAGGA+TGG | 0.513050 | 1_2:+9494731 | None:intergenic |
| TCAGTAAGAAGACCCCATAA+AGG | 0.514757 | 1_2:+9496060 | None:intergenic |
| AAAAGAAAATGTGGATTCAA+AGG | 0.516295 | 1_2:-9492173 | Msa0054800:CDS |
| AAATGAAGAAAGAAAGTCAA+AGG | 0.519772 | 1_2:-9496316 | Msa0054800:CDS |
| GTCAGAAGCAAGGGAAGGAT+GGG | 0.531751 | 1_2:+9494732 | None:intergenic |
| GGTTTGATGACTATTCCAGC+TGG | 0.533339 | 1_2:-9494500 | Msa0054800:CDS |
| AAATTGCCAACACAAGATGA+AGG | 0.535053 | 1_2:+9494833 | None:intergenic |
| GTTGTTTATGGAATAAGTCA+AGG | 0.536630 | 1_2:-9496201 | Msa0054800:CDS |
| GTTAGGGCAAATAGAGAGAA+GGG | 0.537236 | 1_2:-9492021 | Msa0054800:three_prime_UTR |
| AATATCAGAGGGATTTGAAA+GGG | 0.537945 | 1_2:-9491980 | Msa0054800:three_prime_UTR |
| AATACATAACAGTCATAGAC+AGG | 0.538818 | 1_2:-9492082 | Msa0054800:exon |
| AACTTTGCATGTCAGAAGCA+AGG | 0.539901 | 1_2:+9494722 | None:intergenic |
| CATAAAGGCTTAACAATCCA+AGG | 0.539921 | 1_2:+9496075 | None:intergenic |
| AAATGACTAGTAGACTAAAG+TGG | 0.544535 | 1_2:-9492459 | Msa0054800:CDS |
| TGAAAACCTTCATCTTGTGT+TGG | 0.550037 | 1_2:-9494839 | Msa0054800:CDS |
| CTAATGTCAATTGATAATGC+TGG | 0.554898 | 1_2:-9492370 | Msa0054800:CDS |
| AATGAAGAAAGAAAGTCAAA+GGG | 0.555190 | 1_2:-9496315 | Msa0054800:CDS |
| TGTTAGGGCAAATAGAGAGA+AGG | 0.559335 | 1_2:-9492022 | Msa0054800:three_prime_UTR |
| CTTCTTTCATCATCATGGGG+TGG | 0.567293 | 1_2:-9492346 | Msa0054800:CDS |
| TGGATTGTTAAGCCTTTATG+GGG | 0.567662 | 1_2:-9496072 | Msa0054800:CDS |
| GGACTTCTTTCATCATCATG+GGG | 0.573124 | 1_2:-9492349 | Msa0054800:CDS |
| ACAAAACTTCTCTTACAGAC+AGG | 0.574633 | 1_2:-9494435 | Msa0054800:intron |
| ACTTTGCATGTCAGAAGCAA+GGG | 0.576270 | 1_2:+9494723 | None:intergenic |
| AAACTTTGTGGATGCCGGCA+AGG | 0.577788 | 1_2:-9494150 | Msa0054800:CDS |
| GATATTCAAACTCAGTGCAA+AGG | 0.582025 | 1_2:+9494067 | None:intergenic |
| GCATAAACCTGTGCTTCAGA+AGG | 0.585483 | 1_2:+9496114 | None:intergenic |
| TTATTGGTATACAGACTCAA+AGG | 0.588010 | 1_2:-9494030 | Msa0054800:CDS |
| GGAATAAGTCAAGGTTTAGG+TGG | 0.592318 | 1_2:-9496192 | Msa0054800:CDS |
| ATGGAAAGATAACAAAAGCA+TGG | 0.598685 | 1_2:+9494861 | None:intergenic |
| AACAGCAGGGAGTGCTGGAG+TGG | 0.601674 | 1_2:-9494803 | Msa0054800:CDS |
| GGATGGCCCATCTTTCTCAC+AGG | 0.602106 | 1_2:-9494009 | Msa0054800:intron |
| AATGTTCCTTCAATACCAGA+TGG | 0.602463 | 1_2:+9492403 | None:intergenic |
| TAATATCAGAGGGATTTGAA+AGG | 0.603270 | 1_2:-9491981 | Msa0054800:three_prime_UTR |
| TAGCTCCATGTAATATCAGA+GGG | 0.606208 | 1_2:-9491991 | Msa0054800:three_prime_UTR |
| AAAGAGTTAGGATCAACTCT+AGG | 0.610731 | 1_2:+9492208 | None:intergenic |
| TGGTATACAGACTCAAAGGA+TGG | 0.620432 | 1_2:-9494026 | Msa0054800:CDS |
| TTAGCTCCATGTAATATCAG+AGG | 0.624134 | 1_2:-9491992 | Msa0054800:three_prime_UTR |
| AGAAAATGTGGATTCAAAGG+TGG | 0.627950 | 1_2:-9492170 | Msa0054800:CDS |
| TTTGAGCTGAGTACAAGCAT+AGG | 0.628993 | 1_2:+9492433 | None:intergenic |
| AGTTGCTCTATGGTCTATCA+GGG | 0.638082 | 1_2:-9492570 | Msa0054800:CDS |
| TATTGACACTTCAGAAACCA+AGG | 0.638956 | 1_2:-9492143 | Msa0054800:CDS |
| TGGATGCCGGCAAGGCTATG+TGG | 0.641291 | 1_2:-9494142 | Msa0054800:CDS |
| TGAAGAATCAAGATGTATGG+AGG | 0.648173 | 1_2:-9494112 | Msa0054800:CDS |
| TGCATGTCAGAAGCAAGGGA+AGG | 0.650191 | 1_2:+9494727 | None:intergenic |
| GATAAGTACATGTATAGACA+AGG | 0.690907 | 1_2:+9494089 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATATTGAAGTTAATTTTA+TGG | + | chr1_2:9491898-9491917 | None:intergenic | 10.0% |
| !!! | TATTTCAATATTTTTTTGTT+AGG | - | chr1_2:9496456-9496475 | Msa0054800:five_prime_UTR | 10.0% |
| !!! | ATTTCAATATTTTTTTGTTA+GGG | - | chr1_2:9496457-9496476 | Msa0054800:five_prime_UTR | 10.0% |
| !!! | TTGTTATACTTGTTATTTTT+TGG | + | chr1_2:9492109-9492128 | None:intergenic | 15.0% |
| !! | TTGATGTTTATCAAATTAAA+AGG | - | chr1_2:9492663-9492682 | Msa0054800:CDS | 15.0% |
| !!! | GTATGATATTTTTTACTTTT+TGG | - | chr1_2:9495230-9495249 | Msa0054800:intron | 15.0% |
| !!! | TTTTAAAAAATTACTAAGCA+TGG | + | chr1_2:9495655-9495674 | None:intergenic | 15.0% |
| !! | TAGCAATAGTTTATATAATT+TGG | - | chr1_2:9495680-9495699 | Msa0054800:intron | 15.0% |
| !!! | TTAATTTGATAAACATCAAG+AGG | + | chr1_2:9492662-9492681 | None:intergenic | 20.0% |
| !! | ATTATATGTGTTTCTTATAG+TGG | - | chr1_2:9493471-9493490 | Msa0054800:intron | 20.0% |
| !!! | TGATAGATTTTTTTCTCATA+GGG | - | chr1_2:9493964-9493983 | Msa0054800:intron | 20.0% |
| !! | ATATTTATAGATAAGTTCAC+TGG | - | chr1_2:9495148-9495167 | Msa0054800:intron | 20.0% |
| !! | ATTAGGGAAGTTAAAAATTA+AGG | - | chr1_2:9495281-9495300 | Msa0054800:intron | 20.0% |
| !! | TATAGCATCATATATATTTG+TGG | - | chr1_2:9495386-9495405 | Msa0054800:intron | 20.0% |
| !!! | AAAGTTTTTTCATTCAACTA+GGG | + | chr1_2:9495706-9495725 | None:intergenic | 20.0% |
| !!! | TAAAGTTTTTTCATTCAACT+AGG | + | chr1_2:9495707-9495726 | None:intergenic | 20.0% |
| !!! | TATTGAAATAAATATTGGCT+TGG | + | chr1_2:9496446-9496465 | None:intergenic | 20.0% |
| ! | AAATGATTACAATCCTTGAA+AGG | - | chr1_2:9491990-9492009 | Msa0054800:three_prime_UTR | 25.0% |
| ! | AATGATTACAATCCTTGAAA+GGG | - | chr1_2:9491991-9492010 | Msa0054800:three_prime_UTR | 25.0% |
| ! | AAATGAAGAAAGAAAGTCAA+AGG | - | chr1_2:9492178-9492197 | Msa0054800:CDS | 25.0% |
| ! | AATGAAGAAAGAAAGTCAAA+GGG | - | chr1_2:9492179-9492198 | Msa0054800:CDS | 25.0% |
| ! | AAGCTCGATATCTTAAAATT+CGG | - | chr1_2:9492745-9492764 | Msa0054800:intron | 25.0% |
| ! | TAAGTTAATCTGGCATTAAT+CGG | - | chr1_2:9492776-9492795 | Msa0054800:intron | 25.0% |
| ! | CTGAAAAAATGGTTATAAGA+GGG | + | chr1_2:9492823-9492842 | None:intergenic | 25.0% |
| ! | CTTAACACAATAGTAATTGA+TGG | - | chr1_2:9492868-9492887 | Msa0054800:intron | 25.0% |
| ! | AAAAGTAATAGTTATGAGCA+GGG | + | chr1_2:9493081-9493100 | None:intergenic | 25.0% |
| ! | GTAAACAAATTAGGATCTAA+GGG | - | chr1_2:9493127-9493146 | Msa0054800:intron | 25.0% |
| ! | TAAACAAATTAGGATCTAAG+GGG | - | chr1_2:9493128-9493147 | Msa0054800:intron | 25.0% |
| ! | TTTATCTGAATGCTGAAAAT+GGG | - | chr1_2:9493161-9493180 | Msa0054800:intron | 25.0% |
| !! | TGAAAAACTTTGCAAGTTTT+AGG | + | chr1_2:9493904-9493923 | None:intergenic | 25.0% |
| !!! | CTGATAGATTTTTTTCTCAT+AGG | - | chr1_2:9493963-9493982 | Msa0054800:intron | 25.0% |
| !!! | GATAGATTTTTTTCTCATAG+GGG | - | chr1_2:9493965-9493984 | Msa0054800:intron | 25.0% |
| !!! | ATAGATTTTTTTCTCATAGG+GGG | - | chr1_2:9493966-9493985 | Msa0054800:intron | 25.0% |
| !!! | TAAGAGAAGTTTTGTATATG+AGG | + | chr1_2:9494054-9494073 | None:intergenic | 25.0% |
| ! | ATAAGCACGTAATACTTATA+TGG | + | chr1_2:9494263-9494282 | None:intergenic | 25.0% |
| ! | ATATAAGTATTACGTGCTTA+TGG | - | chr1_2:9494262-9494281 | Msa0054800:intron | 25.0% |
| !! | TCAGATTAGGTGTTATATTA+GGG | + | chr1_2:9494300-9494319 | None:intergenic | 25.0% |
| !! | ATCAGATTAGGTGTTATATT+AGG | + | chr1_2:9494301-9494320 | None:intergenic | 25.0% |
| ! | GAGAATGAAAAAATCAGATT+AGG | + | chr1_2:9494313-9494332 | None:intergenic | 25.0% |
| !!! | ATCTGATTTTTTCATTCTCT+AGG | - | chr1_2:9494314-9494333 | Msa0054800:intron | 25.0% |
| ! | ATTTGATTAGGCATATTGAT+CGG | - | chr1_2:9494509-9494528 | Msa0054800:CDS | 25.0% |
| ! | GAATTTCATGAAGTTTAGAT+TGG | + | chr1_2:9494630-9494649 | None:intergenic | 25.0% |
| ! | TCATGAATACAAAAGACATT+TGG | + | chr1_2:9494867-9494886 | None:intergenic | 25.0% |
| ! | TCTGATTACTCTTCTAATTT+AGG | - | chr1_2:9494901-9494920 | Msa0054800:intron | 25.0% |
| !!! | TGGTTTTATAATGTTGAGTT+AGG | + | chr1_2:9494934-9494953 | None:intergenic | 25.0% |
| !! | AAATGTTGATGGAATAACAA+GGG | - | chr1_2:9495053-9495072 | Msa0054800:intron | 25.0% |
| !! | AATCTTTTCACCAAAAGTTA+CGG | - | chr1_2:9495201-9495220 | Msa0054800:intron | 25.0% |
| ! | TGTACTTAGAAGAAAACATT+AGG | - | chr1_2:9495264-9495283 | Msa0054800:intron | 25.0% |
| ! | GTACTTAGAAGAAAACATTA+GGG | - | chr1_2:9495265-9495284 | Msa0054800:intron | 25.0% |
| ! | GTTAAAAATTAAGGAATCCA+AGG | - | chr1_2:9495290-9495309 | Msa0054800:intron | 25.0% |
| !! | TAACATCTTATTTATCCTTG+AGG | + | chr1_2:9495453-9495472 | None:intergenic | 25.0% |
| ! | GTATAATATTGCTCCTAAAA+GGG | + | chr1_2:9495855-9495874 | None:intergenic | 25.0% |
| ! | AAGATTATCAAACTTTGTTC+TGG | + | chr1_2:9496203-9496222 | None:intergenic | 25.0% |
| !! | GAACAAAGTTTGATAATCTT+TGG | - | chr1_2:9496203-9496222 | Msa0054800:CDS | 25.0% |
| !! | TTTGAATCCACATTTTCTTT+TGG | + | chr1_2:9496322-9496341 | None:intergenic | 25.0% |
| ! | AAAAGAAAATGTGGATTCAA+AGG | - | chr1_2:9496321-9496340 | Msa0054800:CDS | 25.0% |
| !! | AGTTTAGCATAAACTTTTGA+AGG | - | chr1_2:9496593-9496612 | Msa0054800:five_prime_UTR | 25.0% |
| !!! | TCATTTTTTTGCTCAGATTC+TGG | + | chr1_2:9492164-9492183 | None:intergenic | 30.0% |
| ! | AGCATTTTAAACCATTCACT+TGG | + | chr1_2:9492233-9492252 | None:intergenic | 30.0% |
| !!! | ATGCATTGGAGTTTTGTTTT+TGG | - | chr1_2:9492263-9492282 | Msa0054800:CDS | 30.0% |
| !! | TTTGGAGTAGTTGTTGTTTA+TGG | - | chr1_2:9492281-9492300 | Msa0054800:CDS | 30.0% |
| GTTGTTTATGGAATAAGTCA+AGG | - | chr1_2:9492293-9492312 | Msa0054800:CDS | 30.0% | |
| TATGGAATAAGTCAAGGTTT+AGG | - | chr1_2:9492299-9492318 | Msa0054800:CDS | 30.0% | |
| TTGGATTGTTAAGCCTTTAT+GGG | - | chr1_2:9492421-9492440 | Msa0054800:CDS | 30.0% | |
| ! | ACTGATGTTCTTCCTATTTT+TGG | - | chr1_2:9492452-9492471 | Msa0054800:CDS | 30.0% |
| !!! | TTCTTCCTATTTTTGGATAC+CGG | - | chr1_2:9492459-9492478 | Msa0054800:CDS | 30.0% |
| ! | AAATGAAGTAAGGTTTTCTC+CGG | + | chr1_2:9492481-9492500 | None:intergenic | 30.0% |
| !! | AAACCTTACTTCATTTTTGC+TGG | - | chr1_2:9492485-9492504 | Msa0054800:CDS | 30.0% |
| ATACCAGCAAAAATGAAGTA+AGG | + | chr1_2:9492491-9492510 | None:intergenic | 30.0% | |
| TGATCTTTGTTCAAATGTGT+TGG | - | chr1_2:9492525-9492544 | Msa0054800:CDS | 30.0% | |
| ! | AGCTCAATTTATGTTCTAGA+TGG | - | chr1_2:9492564-9492583 | Msa0054800:CDS | 30.0% |
| ! | GCTCAATTTATGTTCTAGAT+GGG | - | chr1_2:9492565-9492584 | Msa0054800:CDS | 30.0% |
| AGAGGTTCACAACTTATAAA+GGG | + | chr1_2:9492644-9492663 | None:intergenic | 30.0% | |
| AAGAGGTTCACAACTTATAA+AGG | + | chr1_2:9492645-9492664 | None:intergenic | 30.0% | |
| AGCTCGATATCTTAAAATTC+GGG | - | chr1_2:9492746-9492765 | Msa0054800:intron | 30.0% | |
| GATTAATGCCAGATTAACTT+AGG | + | chr1_2:9492777-9492796 | None:intergenic | 30.0% | |
| AAGTTAATCTGGCATTAATC+GGG | - | chr1_2:9492777-9492796 | Msa0054800:intron | 30.0% | |
| CCTGAAAAAATGGTTATAAG+AGG | + | chr1_2:9492824-9492843 | None:intergenic | 30.0% | |
| !!! | CCTCTTATAACCATTTTTTC+AGG | - | chr1_2:9492821-9492840 | Msa0054800:intron | 30.0% |
| TAAGATGTGACCTGAAAAAA+TGG | + | chr1_2:9492834-9492853 | None:intergenic | 30.0% | |
| TCATTTGCACTTAGATACTA+TGG | - | chr1_2:9492900-9492919 | Msa0054800:intron | 30.0% | |
| CATTTGCACTTAGATACTAT+GGG | - | chr1_2:9492901-9492920 | Msa0054800:intron | 30.0% | |
| ! | TTAGTCAAAGGGTTTAAAAC+CGG | - | chr1_2:9492935-9492954 | Msa0054800:intron | 30.0% |
| CAAAAGTAATAGTTATGAGC+AGG | + | chr1_2:9493082-9493101 | None:intergenic | 30.0% | |
| ! | CTGCTCATAACTATTACTTT+TGG | - | chr1_2:9493080-9493099 | Msa0054800:intron | 30.0% |
| GGTAAACAAATTAGGATCTA+AGG | - | chr1_2:9493126-9493145 | Msa0054800:intron | 30.0% | |
| AAACAAATTAGGATCTAAGG+GGG | - | chr1_2:9493129-9493148 | Msa0054800:intron | 30.0% | |
| GTTTATCTGAATGCTGAAAA+TGG | - | chr1_2:9493160-9493179 | Msa0054800:intron | 30.0% | |
| TTATCTGAATGCTGAAAATG+GGG | - | chr1_2:9493162-9493181 | Msa0054800:intron | 30.0% | |
| TTATTCAGTACACTTGTTCT+AGG | - | chr1_2:9493233-9493252 | Msa0054800:intron | 30.0% | |
| ATCTCTTCATCAATTCTTGT+AGG | + | chr1_2:9493536-9493555 | None:intergenic | 30.0% | |
| AGACTACTATATTAGTGAAG+CGG | + | chr1_2:9493566-9493585 | None:intergenic | 30.0% | |
| ATGGAAAGATAACAAAAGCA+TGG | + | chr1_2:9493636-9493655 | None:intergenic | 30.0% | |
| !!! | TGTGCTTTTAGTTCTTCTAT+TGG | - | chr1_2:9493797-9493816 | Msa0054800:intron | 30.0% |
| CTATTAGGATTCTCTATTAG+TGG | - | chr1_2:9493824-9493843 | Msa0054800:intron | 30.0% | |
| GGAAGAAAAGAAAAATCAAG+AGG | + | chr1_2:9493883-9493902 | None:intergenic | 30.0% | |
| ! | TCTTTCTATTTTCCTCTGAT+CGG | - | chr1_2:9494138-9494157 | Msa0054800:CDS | 30.0% |
| CATTGAAGAATCAAGATGTA+TGG | - | chr1_2:9494379-9494398 | Msa0054800:intron | 30.0% | |
| GATAAGTACATGTATAGACA+AGG | + | chr1_2:9494408-9494427 | None:intergenic | 30.0% | |
| ! | TCCTTGAAGGAATGTTTTAT+TGG | - | chr1_2:9494448-9494467 | Msa0054800:CDS | 30.0% |
| ACCAATAAAACATTCCTTCA+AGG | + | chr1_2:9494452-9494471 | None:intergenic | 30.0% | |
| TTATTGGTATACAGACTCAA+AGG | - | chr1_2:9494464-9494483 | Msa0054800:CDS | 30.0% | |
| TTTCTCACAGGTATTTGATT+AGG | - | chr1_2:9494497-9494516 | Msa0054800:CDS | 30.0% | |
| ! | TTCTCTATGCTCTCTTTTTA+AGG | + | chr1_2:9494830-9494849 | None:intergenic | 30.0% |
| TAAAACCAACTTGTAAAGTG+AGG | - | chr1_2:9494946-9494965 | Msa0054800:intron | 30.0% | |
| AAAACCAACTTGTAAAGTGA+GGG | - | chr1_2:9494947-9494966 | Msa0054800:intron | 30.0% | |
| ! | CAAATGTTGATGGAATAACA+AGG | - | chr1_2:9495052-9495071 | Msa0054800:intron | 30.0% |
| ! | ATCTTTTCACCAAAAGTTAC+GGG | - | chr1_2:9495202-9495221 | Msa0054800:intron | 30.0% |
| GATGTTAAATCCTTGTGATT+AGG | - | chr1_2:9495466-9495485 | Msa0054800:intron | 30.0% | |
| ! | TTTGAGACTGTTTGAGAATT+GGG | - | chr1_2:9495536-9495555 | Msa0054800:intron | 30.0% |
| AATAAGCTGAAAACAGCTTA+TGG | + | chr1_2:9495591-9495610 | None:intergenic | 30.0% | |
| ! | ATATTTTCAATCAGCTCAGT+CGG | - | chr1_2:9495827-9495846 | Msa0054800:intron | 30.0% |
| GGTATAATATTGCTCCTAAA+AGG | + | chr1_2:9495856-9495875 | None:intergenic | 30.0% | |
| ATTATACCAATACGCTCTAA+AGG | - | chr1_2:9495868-9495887 | Msa0054800:intron | 30.0% | |
| !! | AGGGATGTTTGATCTTATTT+TGG | - | chr1_2:9495943-9495962 | Msa0054800:intron | 30.0% |
| ATGAGATTGAACCTAAAGTT+TGG | - | chr1_2:9495968-9495987 | Msa0054800:intron | 30.0% | |
| AAATGACTAGTAGACTAAAG+TGG | - | chr1_2:9496035-9496054 | Msa0054800:CDS | 30.0% | |
| !! | CTAATGTCAATTGATAATGC+TGG | - | chr1_2:9496124-9496143 | Msa0054800:CDS | 30.0% |
| !!! | TTTGGTTAGCGATTTTGATT+CGG | - | chr1_2:9496221-9496240 | Msa0054800:CDS | 30.0% |
| TCTTCTTCCAAAAGAAAATG+TGG | - | chr1_2:9496312-9496331 | Msa0054800:CDS | 30.0% | |
| AATACATAACAGTCATAGAC+AGG | - | chr1_2:9496412-9496431 | Msa0054800:five_prime_UTR | 30.0% | |
| TAATATCAGAGGGATTTGAA+AGG | - | chr1_2:9496513-9496532 | Msa0054800:five_prime_UTR | 30.0% | |
| AATATCAGAGGGATTTGAAA+GGG | - | chr1_2:9496514-9496533 | Msa0054800:five_prime_UTR | 30.0% | |
| !! | TTAGCATAAACTTTTGAAGG+TGG | - | chr1_2:9496596-9496615 | Msa0054800:five_prime_UTR | 30.0% |
| !! | TAAACTTTTGAAGGTGGAAA+AGG | - | chr1_2:9496602-9496621 | Msa0054800:five_prime_UTR | 30.0% |
| AATCTAGTACTACCCTTTCA+AGG | + | chr1_2:9492006-9492025 | None:intergenic | 35.0% | |
| !! | AGTCAAAGGGTGTTAGAATA+TGG | - | chr1_2:9492192-9492211 | Msa0054800:CDS | 35.0% |
| ! | GTTTTTGCATTCCAAGTGAA+TGG | - | chr1_2:9492219-9492238 | Msa0054800:CDS | 35.0% |
| TGCTATCAAGAGAAATGCAT+TGG | - | chr1_2:9492249-9492268 | Msa0054800:CDS | 35.0% | |
| CTGGAATTACATCTATTCCT+TGG | - | chr1_2:9492402-9492421 | Msa0054800:CDS | 35.0% | |
| CATAAAGGCTTAACAATCCA+AGG | + | chr1_2:9492422-9492441 | None:intergenic | 35.0% | |
| CTTGGATTGTTAAGCCTTTA+TGG | - | chr1_2:9492420-9492439 | Msa0054800:CDS | 35.0% | |
| TGGATTGTTAAGCCTTTATG+GGG | - | chr1_2:9492422-9492441 | Msa0054800:CDS | 35.0% | |
| TTTCTCCGGTATCCAAAAAT+AGG | + | chr1_2:9492467-9492486 | None:intergenic | 35.0% | |
| ACTTAGATACTATGGGAGAT+TGG | - | chr1_2:9492908-9492927 | Msa0054800:intron | 35.0% | |
| AGATTGGACTCTTAGTCAAA+GGG | - | chr1_2:9492924-9492943 | Msa0054800:intron | 35.0% | |
| !! | CAAGGGTTTTGATATCTACT+AGG | - | chr1_2:9492986-9493005 | Msa0054800:intron | 35.0% |
| CAATACGAAGAACTAAGACA+TGG | - | chr1_2:9493042-9493061 | Msa0054800:intron | 35.0% | |
| CCATTGTTCCATAACATCTT+GGG | + | chr1_2:9493207-9493226 | None:intergenic | 35.0% | |
| ACCATTGTTCCATAACATCT+TGG | + | chr1_2:9493208-9493227 | None:intergenic | 35.0% | |
| ATGTCTCAATGATTGCAATG+AGG | + | chr1_2:9493291-9493310 | None:intergenic | 35.0% | |
| CTTAGATCGCAAGGATATAA+GGG | - | chr1_2:9493331-9493350 | Msa0054800:intron | 35.0% | |
| TTTCATGAGACAACCTTAGA+AGG | - | chr1_2:9493427-9493446 | Msa0054800:intron | 35.0% | |
| TTCATGAGACAACCTTAGAA+GGG | - | chr1_2:9493428-9493447 | Msa0054800:intron | 35.0% | |
| TCTCGTTTATAACCCTTCTA+AGG | + | chr1_2:9493443-9493462 | None:intergenic | 35.0% | |
| TAGAAGGGTTATAAACGAGA+AGG | - | chr1_2:9493443-9493462 | Msa0054800:intron | 35.0% | |
| !! | TGTGTTTCTTATAGTGGATG+TGG | - | chr1_2:9493477-9493496 | Msa0054800:intron | 35.0% |
| ! | GAATTTTTGTCGCTCATTGA+TGG | - | chr1_2:9493586-9493605 | Msa0054800:intron | 35.0% |
| ! | TTGATGGTTGCAGGTTTATT+AGG | - | chr1_2:9493602-9493621 | Msa0054800:intron | 35.0% |
| ! | ACACAAGATGAAGGTTTTCA+TGG | + | chr1_2:9493655-9493674 | None:intergenic | 35.0% |
| TGAAAACCTTCATCTTGTGT+TGG | - | chr1_2:9493655-9493674 | Msa0054800:intron | 35.0% | |
| AAATTGCCAACACAAGATGA+AGG | + | chr1_2:9493664-9493683 | None:intergenic | 35.0% | |
| !! | TCATCTTGTGTTGGCAATTT+TGG | - | chr1_2:9493664-9493683 | Msa0054800:intron | 35.0% |
| TCTTCTATTGGTGCACTATT+AGG | - | chr1_2:9493809-9493828 | Msa0054800:intron | 35.0% | |
| AAATCAAGAGGCTAACCATA+GGG | + | chr1_2:9493871-9493890 | None:intergenic | 35.0% | |
| AAAATCAAGAGGCTAACCAT+AGG | + | chr1_2:9493872-9493891 | None:intergenic | 35.0% | |
| ! | TCCAGCTGGACTTATAATTT+TGG | - | chr1_2:9494008-9494027 | Msa0054800:intron | 35.0% |
| ACCAAAATTATAAGTCCAGC+TGG | + | chr1_2:9494012-9494031 | None:intergenic | 35.0% | |
| !! | GCTGGACTTATAATTTTGGT+CGG | - | chr1_2:9494012-9494031 | Msa0054800:CDS | 35.0% |
| ACAAAACTTCTCTTACAGAC+AGG | - | chr1_2:9494059-9494078 | Msa0054800:CDS | 35.0% | |
| ATTCTCAGAAACATCGTAGT+AGG | - | chr1_2:9494178-9494197 | Msa0054800:intron | 35.0% | |
| TGAAGAATCAAGATGTATGG+AGG | - | chr1_2:9494382-9494401 | Msa0054800:intron | 35.0% | |
| GATATTCAAACTCAGTGCAA+AGG | + | chr1_2:9494430-9494449 | None:intergenic | 35.0% | |
| CTGAGTTTGAATATCCTTGA+AGG | - | chr1_2:9494435-9494454 | Msa0054800:intron | 35.0% | |
| CAAATACCTGTGAGAAAGAT+GGG | + | chr1_2:9494494-9494513 | None:intergenic | 35.0% | |
| TCAAATACCTGTGAGAAAGA+TGG | + | chr1_2:9494495-9494514 | None:intergenic | 35.0% | |
| GCATTTCATCTTCCCTTATA+TGG | - | chr1_2:9494559-9494578 | Msa0054800:intron | 35.0% | |
| TGAAATTCTCATGTCTACTG+TGG | - | chr1_2:9494642-9494661 | Msa0054800:CDS | 35.0% | |
| GTCTTGCATCAAATGATAGA+AGG | + | chr1_2:9494680-9494699 | None:intergenic | 35.0% | |
| TTTGCATCAAGTGAGTTAGA+AGG | - | chr1_2:9494746-9494765 | Msa0054800:CDS | 35.0% | |
| ! | TTGACTCGAAATAAAGCTCT+CGG | + | chr1_2:9494795-9494814 | None:intergenic | 35.0% |
| ! | AAGGGTTTTACTTATAGCAG+TGG | - | chr1_2:9495071-9495090 | Msa0054800:intron | 35.0% |
| TAGATAAGTTCACTGGAACT+TGG | - | chr1_2:9495155-9495174 | Msa0054800:intron | 35.0% | |
| ! | TCATTTGTACTTTTGCCAAG+TGG | + | chr1_2:9495356-9495375 | None:intergenic | 35.0% |
| ATATATATTTGTGGCTGCCA+TGG | - | chr1_2:9495395-9495414 | Msa0054800:intron | 35.0% | |
| CTTATTTATCCTTGAGGTAG+AGG | + | chr1_2:9495447-9495466 | None:intergenic | 35.0% | |
| CAAAAAGACTCCTAATCACA+AGG | + | chr1_2:9495479-9495498 | None:intergenic | 35.0% | |
| ! | CTTGTGATTAGGAGTCTTTT+TGG | - | chr1_2:9495477-9495496 | Msa0054800:intron | 35.0% |
| !! | CTTTGAGACTGTTTGAGAAT+TGG | - | chr1_2:9495535-9495554 | Msa0054800:intron | 35.0% |
| TTCAATAAGCTCTCCATGAT+AGG | - | chr1_2:9495610-9495629 | Msa0054800:intron | 35.0% | |
| AAATGCAAGACAAAGGTTAC+TGG | + | chr1_2:9495782-9495801 | None:intergenic | 35.0% | |
| TGGAAGAAAATGCAAGACAA+AGG | + | chr1_2:9495789-9495808 | None:intergenic | 35.0% | |
| ! | TTTCTTCCACAGGAAAGTAT+AGG | - | chr1_2:9495800-9495819 | Msa0054800:intron | 35.0% |
| ATGAAACCTATACTTTCCTG+TGG | + | chr1_2:9495809-9495828 | None:intergenic | 35.0% | |
| ! | CATTCAGAGACTTACTCTTT+TGG | - | chr1_2:9495897-9495916 | Msa0054800:intron | 35.0% |
| GAACCTAAAGTTTGGTATAC+CGG | - | chr1_2:9495976-9495995 | Msa0054800:intron | 35.0% | |
| AATCCGGTATACCAAACTTT+AGG | + | chr1_2:9495982-9496001 | None:intergenic | 35.0% | |
| ATCACAACAAAGACGTAATC+CGG | + | chr1_2:9495998-9496017 | None:intergenic | 35.0% | |
| AATGTTCCTTCAATACCAGA+TGG | + | chr1_2:9496094-9496113 | None:intergenic | 35.0% | |
| TGGACTTCTTTCATCATCAT+GGG | - | chr1_2:9496144-9496163 | Msa0054800:CDS | 35.0% | |
| ACTAAAAACAGCATGCAAAG+TGG | + | chr1_2:9496265-9496284 | None:intergenic | 35.0% | |
| AAAGAGTTAGGATCAACTCT+AGG | + | chr1_2:9496289-9496308 | None:intergenic | 35.0% | |
| GGAAGAAGAATGAAAGAGTT+AGG | + | chr1_2:9496301-9496320 | None:intergenic | 35.0% | |
| AGAAAATGTGGATTCAAAGG+TGG | - | chr1_2:9496324-9496343 | Msa0054800:CDS | 35.0% | |
| TATTGACACTTCAGAAACCA+AGG | - | chr1_2:9496351-9496370 | Msa0054800:CDS | 35.0% | |
| AGAAACCAAGGATGTTGAAT+TGG | - | chr1_2:9496363-9496382 | Msa0054800:CDS | 35.0% | |
| TTAGCTCCATGTAATATCAG+AGG | - | chr1_2:9496502-9496521 | Msa0054800:five_prime_UTR | 35.0% | |
| TAGCTCCATGTAATATCAGA+GGG | - | chr1_2:9496503-9496522 | Msa0054800:five_prime_UTR | 35.0% | |
| CAAATCCCTCTGATATTACA+TGG | + | chr1_2:9496511-9496530 | None:intergenic | 35.0% | |
| GGAATAAGTCAAGGTTTAGG+TGG | - | chr1_2:9492302-9492321 | Msa0054800:CDS | 40.0% | |
| TCAGTAAGAAGACCCCATAA+AGG | + | chr1_2:9492437-9492456 | None:intergenic | 40.0% | |
| ! | AGTTTAGTGACTTGTAAGCG+CGG | - | chr1_2:9492710-9492729 | Msa0054800:intron | 40.0% |
| ACTTGTAAGCGCGGTTTATA+GGG | - | chr1_2:9492719-9492738 | Msa0054800:intron | 40.0% | |
| GGGTTAGACCTAAGTTAATC+TGG | - | chr1_2:9492766-9492785 | Msa0054800:intron | 40.0% | |
| ! | TTAATCGGGTTGTATGGTGA+TGG | - | chr1_2:9492791-9492810 | Msa0054800:intron | 40.0% |
| GAGATTGGACTCTTAGTCAA+AGG | - | chr1_2:9492923-9492942 | Msa0054800:intron | 40.0% | |
| AAAACCGGTCTTTGAGCATT+TGG | - | chr1_2:9492950-9492969 | Msa0054800:intron | 40.0% | |
| AAACCGGTCTTTGAGCATTT+GGG | - | chr1_2:9492951-9492970 | Msa0054800:intron | 40.0% | |
| ! | TTTTGATATCTACTAGGCCG+CGG | - | chr1_2:9492992-9493011 | Msa0054800:intron | 40.0% |
| ATGAGCAGGGTTTCAAATTG+CGG | + | chr1_2:9493068-9493087 | None:intergenic | 40.0% | |
| ! | ACTTTTGGCGCTTTTGCTTT+TGG | - | chr1_2:9493095-9493114 | Msa0054800:intron | 40.0% |
| !! | CTTTTGGCGCTTTTGCTTTT+GGG | - | chr1_2:9493096-9493115 | Msa0054800:intron | 40.0% |
| AATGGGGTCATTATCTCCTT+TGG | - | chr1_2:9493178-9493197 | Msa0054800:intron | 40.0% | |
| ATAACATCTTGGGAAGCCAA+AGG | + | chr1_2:9493197-9493216 | None:intergenic | 40.0% | |
| ! | TTTGGCTTCCCAAGATGTTA+TGG | - | chr1_2:9493196-9493215 | Msa0054800:intron | 40.0% |
| CCCAAGATGTTATGGAACAA+TGG | - | chr1_2:9493204-9493223 | Msa0054800:intron | 40.0% | |
| GTCAAATGTAGCTTCAGTTG+TGG | - | chr1_2:9493265-9493284 | Msa0054800:intron | 40.0% | |
| GCTTAGATCGCAAGGATATA+AGG | - | chr1_2:9493330-9493349 | Msa0054800:intron | 40.0% | |
| ATATAAGGGACACAGTCTCT+TGG | - | chr1_2:9493345-9493364 | Msa0054800:intron | 40.0% | |
| !!! | CAATTTTGGCCTTAACAGCA+GGG | - | chr1_2:9493678-9493697 | Msa0054800:intron | 40.0% |
| ACTTTGCATGTCAGAAGCAA+GGG | + | chr1_2:9493774-9493793 | None:intergenic | 40.0% | |
| AACTTTGCATGTCAGAAGCA+AGG | + | chr1_2:9493775-9493794 | None:intergenic | 40.0% | |
| GGCATCTTTGTTCACCTTAT+AGG | - | chr1_2:9493845-9493864 | Msa0054800:intron | 40.0% | |
| !!! | TTTTTCTCATAGGGGGTGTT+TGG | - | chr1_2:9493973-9493992 | Msa0054800:intron | 40.0% |
| CGTGCTTATGGTAATTTCCA+TGG | - | chr1_2:9494274-9494293 | Msa0054800:intron | 40.0% | |
| ! | TAGGTGTTATATTAGGGCCA+TGG | + | chr1_2:9494294-9494313 | None:intergenic | 40.0% |
| TGGTATACAGACTCAAAGGA+TGG | - | chr1_2:9494468-9494487 | Msa0054800:CDS | 40.0% | |
| TCTTCCCTTATATGGACAAG+TGG | - | chr1_2:9494567-9494586 | Msa0054800:intron | 40.0% | |
| TGCACCACTTGTCCATATAA+GGG | + | chr1_2:9494574-9494593 | None:intergenic | 40.0% | |
| TTGCACCACTTGTCCATATA+AGG | + | chr1_2:9494575-9494594 | None:intergenic | 40.0% | |
| AAGTGGTGCAATTGTTGTGA+AGG | - | chr1_2:9494584-9494603 | Msa0054800:intron | 40.0% | |
| TGCAATTGTTGTGAAGGTAG+TGG | - | chr1_2:9494590-9494609 | Msa0054800:intron | 40.0% | |
| GCAATTGTTGTGAAGGTAGT+GGG | - | chr1_2:9494591-9494610 | Msa0054800:intron | 40.0% | |
| CTCTCGGAGTACATGTAAAT+GGG | + | chr1_2:9494779-9494798 | None:intergenic | 40.0% | |
| ATAGCCCTCACTTTACAAGT+TGG | + | chr1_2:9494954-9494973 | None:intergenic | 40.0% | |
| ! | ACTTTTGCCATATCTCGATG+TGG | - | chr1_2:9494990-9495009 | Msa0054800:intron | 40.0% |
| ! | CTTTTGCCATATCTCGATGT+GGG | - | chr1_2:9494991-9495010 | Msa0054800:intron | 40.0% |
| AGAACGTGGACAAATGTTGA+TGG | - | chr1_2:9495042-9495061 | Msa0054800:intron | 40.0% | |
| ! | GGTTTTACTTATAGCAGTGG+CGG | - | chr1_2:9495074-9495093 | Msa0054800:intron | 40.0% |
| AGTTCACTGGAACTTGGTAT+TGG | - | chr1_2:9495161-9495180 | Msa0054800:intron | 40.0% | |
| ! | ATACTCGAACCCGTAACTTT+TGG | + | chr1_2:9495214-9495233 | None:intergenic | 40.0% |
| ATTTATCCTTGAGGTAGAGG+CGG | + | chr1_2:9495444-9495463 | None:intergenic | 40.0% | |
| ! | TTGAGAATTGGGAGAGCATA+TGG | - | chr1_2:9495547-9495566 | Msa0054800:intron | 40.0% |
| ! | TGAGAATTGGGAGAGCATAT+GGG | - | chr1_2:9495548-9495567 | Msa0054800:intron | 40.0% |
| ! | TGTCTTGCATTTTCTTCCAC+AGG | - | chr1_2:9495790-9495809 | Msa0054800:intron | 40.0% |
| !! | CGTAATCCTTTAGAGCGTAT+TGG | + | chr1_2:9495877-9495896 | None:intergenic | 40.0% |
| ! | TTTTGGACTCAGTTGCTCTA+TGG | - | chr1_2:9495914-9495933 | Msa0054800:intron | 40.0% |
| AGTTGCTCTATGGTCTATCA+GGG | - | chr1_2:9495924-9495943 | Msa0054800:intron | 40.0% | |
| TTTGAGCTGAGTACAAGCAT+AGG | + | chr1_2:9496064-9496083 | None:intergenic | 40.0% | |
| ! | CTTTGTCCATCTGGTATTGA+AGG | - | chr1_2:9496085-9496104 | Msa0054800:CDS | 40.0% |
| CTGGACTTCTTTCATCATCA+TGG | - | chr1_2:9496143-9496162 | Msa0054800:CDS | 40.0% | |
| GGACTTCTTTCATCATCATG+GGG | - | chr1_2:9496145-9496164 | Msa0054800:CDS | 40.0% | |
| AGACACCAATTCAACATCCT+TGG | + | chr1_2:9496371-9496390 | None:intergenic | 40.0% | |
| ! | TCTCTTGTACACAGTGTTGA+TGG | - | chr1_2:9496388-9496407 | Msa0054800:exon | 40.0% |
| TGTTAGGGCAAATAGAGAGA+AGG | - | chr1_2:9496472-9496491 | Msa0054800:five_prime_UTR | 40.0% | |
| GTTAGGGCAAATAGAGAGAA+GGG | - | chr1_2:9496473-9496492 | Msa0054800:five_prime_UTR | 40.0% | |
| !! | AGTTCAACCTTCTGAAGCAC+AGG | - | chr1_2:9492373-9492392 | Msa0054800:CDS | 45.0% |
| GCATAAACCTGTGCTTCAGA+AGG | + | chr1_2:9492383-9492402 | None:intergenic | 45.0% | |
| ! | TCTGAAGCACAGGTTTATGC+TGG | - | chr1_2:9492383-9492402 | Msa0054800:CDS | 45.0% |
| GACTTGTAAGCGCGGTTTAT+AGG | - | chr1_2:9492718-9492737 | Msa0054800:intron | 45.0% | |
| ! | CTGGCATTAATCGGGTTGTA+TGG | - | chr1_2:9492785-9492804 | Msa0054800:intron | 45.0% |
| GTGGGTGGGGTAAACAAATT+AGG | - | chr1_2:9493118-9493137 | Msa0054800:intron | 45.0% | |
| !!! | GCAATTTTGGCCTTAACAGC+AGG | - | chr1_2:9493677-9493696 | Msa0054800:intron | 45.0% |
| CTGTGCAACACATGCATCAA+TGG | + | chr1_2:9493732-9493751 | None:intergenic | 45.0% | |
| TGTTCACCTTATAGGCCCTA+TGG | - | chr1_2:9493853-9493872 | Msa0054800:intron | 45.0% | |
| ! | GGTTTGATGACTATTCCAGC+TGG | - | chr1_2:9493994-9494013 | Msa0054800:intron | 45.0% |
| CTAGGTGCACCAAAACTTTG+TGG | - | chr1_2:9494332-9494351 | Msa0054800:intron | 45.0% | |
| CACCAAAACTTTGTGGATGC+CGG | - | chr1_2:9494339-9494358 | Msa0054800:intron | 45.0% | |
| !! | TTGTTGTGAAGGTAGTGGGT+TGG | - | chr1_2:9494595-9494614 | Msa0054800:intron | 45.0% |
| GCTCTCGGAGTACATGTAAA+TGG | + | chr1_2:9494780-9494799 | None:intergenic | 45.0% | |
| TGAGATCCCACATCGAGATA+TGG | + | chr1_2:9495000-9495019 | None:intergenic | 45.0% | |
| CTCAACACACTCTCATGTTC+AGG | - | chr1_2:9495016-9495035 | Msa0054800:intron | 45.0% | |
| TCATGTTCAGGACTAGAACG+TGG | - | chr1_2:9495028-9495047 | Msa0054800:intron | 45.0% | |
| ATGGTAGAACAGCGACGATT+AGG | + | chr1_2:9495636-9495655 | None:intergenic | 45.0% | |
| CAGTTGCTCTATGGTCTATC+AGG | - | chr1_2:9495923-9495942 | Msa0054800:intron | 45.0% | |
| ! | AGCTCAAAGCTTTGTCCATC+TGG | - | chr1_2:9496076-9496095 | Msa0054800:CDS | 45.0% |
| CTTCTTTCATCATCATGGGG+TGG | - | chr1_2:9496148-9496167 | Msa0054800:CDS | 45.0% | |
| !! | AAAAATATTGAAATAAATAT+TGG | + | chr1_2:9496451-9496470 | None:intergenic | 5.0% |
| CCACCCAAATGCTCAAAGAC+CGG | + | chr1_2:9492957-9492976 | None:intergenic | 50.0% | |
| !! | TTGGCGCTTTTGCTTTTGGG+TGG | - | chr1_2:9493099-9493118 | Msa0054800:intron | 50.0% |
| !! | TGGCGCTTTTGCTTTTGGGT+GGG | - | chr1_2:9493100-9493119 | Msa0054800:intron | 50.0% |
| !! | GCTTTTGCTTTTGGGTGGGT+GGG | - | chr1_2:9493104-9493123 | Msa0054800:intron | 50.0% |
| !! | CTTTTGCTTTTGGGTGGGTG+GGG | - | chr1_2:9493105-9493124 | Msa0054800:intron | 50.0% |
| CGATCTAAGCTGCGACATCA+AGG | + | chr1_2:9493320-9493339 | None:intergenic | 50.0% | |
| ATGTCGCAGCTTAGATCGCA+AGG | - | chr1_2:9493322-9493341 | Msa0054800:intron | 50.0% | |
| ! | TGTCGCTCATTGATGGTTGC+AGG | - | chr1_2:9493593-9493612 | Msa0054800:intron | 50.0% |
| GTCAGAAGCAAGGGAAGGAT+GGG | + | chr1_2:9493765-9493784 | None:intergenic | 50.0% | |
| TGTCAGAAGCAAGGGAAGGA+TGG | + | chr1_2:9493766-9493785 | None:intergenic | 50.0% | |
| TGCATGTCAGAAGCAAGGGA+AGG | + | chr1_2:9493770-9493789 | None:intergenic | 50.0% | |
| GGCTAACCATAGGGCCTATA+AGG | + | chr1_2:9493862-9493881 | None:intergenic | 50.0% | |
| CTTGTGCATGATCCGATCAG+AGG | + | chr1_2:9494153-9494172 | None:intergenic | 50.0% | |
| ! | TGCCGGCATCCACAAAGTTT+TGG | + | chr1_2:9494344-9494363 | None:intergenic | 50.0% |
| AAACTTTGTGGATGCCGGCA+AGG | - | chr1_2:9494344-9494363 | Msa0054800:intron | 50.0% | |
| ! | TGTAGTCCACATAGCCTTGC+CGG | + | chr1_2:9494361-9494380 | None:intergenic | 50.0% |
| AGGTATGCACGTTCGTACCT+TGG | + | chr1_2:9495310-9495329 | None:intergenic | 50.0% | |
| CGTGCATACCTCTGCTTAAC+AGG | - | chr1_2:9495319-9495338 | Msa0054800:intron | 50.0% | |
| AGCGACGATTAGGCCTATCA+TGG | + | chr1_2:9495626-9495645 | None:intergenic | 50.0% | |
| !! | AGCTCAGTCGGTTCCCTTTT+AGG | - | chr1_2:9495839-9495858 | Msa0054800:intron | 50.0% |
| CTTTCATCATCATGGGGTGG+TGG | - | chr1_2:9496151-9496170 | Msa0054800:CDS | 50.0% | |
| GGTTTAGGTGGTGCTCTTGC+TGG | - | chr1_2:9492314-9492333 | Msa0054800:CDS | 55.0% | |
| CCGGTCTTTGAGCATTTGGG+TGG | - | chr1_2:9492954-9492973 | Msa0054800:intron | 55.0% | |
| TTTGGGTGGTCGCGACTTCA+AGG | - | chr1_2:9492968-9492987 | Msa0054800:intron | 55.0% | |
| TTGGGTGGTCGCGACTTCAA+GGG | - | chr1_2:9492969-9492988 | Msa0054800:intron | 55.0% | |
| TATCTACTAGGCCGCGGTTC+AGG | - | chr1_2:9492998-9493017 | Msa0054800:intron | 55.0% | |
| GTCAAACGCAACCTGAACCG+CGG | + | chr1_2:9493012-9493031 | None:intergenic | 55.0% | |
| !! | CGCTTTTGCTTTTGGGTGGG+TGG | - | chr1_2:9493103-9493122 | Msa0054800:intron | 55.0% |
| TCCAGCACTCCCTGCTGTTA+AGG | + | chr1_2:9493690-9493709 | None:intergenic | 55.0% | |
| GGATGGCCCATCTTTCTCAC+AGG | - | chr1_2:9494485-9494504 | Msa0054800:CDS | 55.0% | |
| TTTGCCAAGTGGCTATGCGC+AGG | + | chr1_2:9495345-9495364 | None:intergenic | 55.0% | |
| GGTGGTGCTCTTGCTGGTGT+TGG | - | chr1_2:9492320-9492339 | Msa0054800:CDS | 60.0% | |
| ! | GCCTTAACAGCAGGGAGTGC+TGG | - | chr1_2:9493686-9493705 | Msa0054800:intron | 60.0% |
| !! | AACAGCAGGGAGTGCTGGAG+TGG | - | chr1_2:9493691-9493710 | Msa0054800:intron | 60.0% |
| TGGATGCCGGCAAGGCTATG+TGG | - | chr1_2:9494352-9494371 | Msa0054800:intron | 60.0% | |
| TGCGCAGGCCTGTTAAGCAG+AGG | + | chr1_2:9495330-9495349 | None:intergenic | 60.0% | |
| CTTGTGACAGGGGGATGCCA+TGG | + | chr1_2:9495415-9495434 | None:intergenic | 60.0% | |
| CATGGCATCCCCCTGTCACA+AGG | - | chr1_2:9495413-9495432 | Msa0054800:intron | 60.0% | |
| CGGAGCTTCCTTGTGACAGG+GGG | + | chr1_2:9495424-9495443 | None:intergenic | 60.0% | |
| GCGGAGCTTCCTTGTGACAG+GGG | + | chr1_2:9495425-9495444 | None:intergenic | 60.0% | |
| GGCGGAGCTTCCTTGTGACA+GGG | + | chr1_2:9495426-9495445 | None:intergenic | 60.0% | |
| AGGCGGAGCTTCCTTGTGAC+AGG | + | chr1_2:9495427-9495446 | None:intergenic | 60.0% | |
| GAAGCTCCGCCTCTACCTCA+AGG | - | chr1_2:9495435-9495454 | Msa0054800:intron | 60.0% | |
| CAGGCCTGCGCATAGCCACT+TGG | - | chr1_2:9495338-9495357 | Msa0054800:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 9491890 | 9496626 | 9491890 | ID=Msa0054800;Name=Msa0054800 |
| chr1_2 | mRNA | 9491890 | 9496626 | 9491890 | ID=Msa0054800-mRNA-1;Parent=Msa0054800;Name=Msa0054800-mRNA-1;_AED=0.05;_eAED=0.05;_QI=238|1|1|1|0.8|0.66|6|180|504 |
| chr1_2 | exon | 9491890 | 9492052 | 9491890 | ID=Msa0054800-mRNA-1:exon:3534;Parent=Msa0054800-mRNA-1 |
| chr1_2 | exon | 9492079 | 9492704 | 9492079 | ID=Msa0054800-mRNA-1:exon:3533;Parent=Msa0054800-mRNA-1 |
| chr1_2 | exon | 9494010 | 9494180 | 9494010 | ID=Msa0054800-mRNA-1:exon:3532;Parent=Msa0054800-mRNA-1 |
| chr1_2 | exon | 9494436 | 9494531 | 9494436 | ID=Msa0054800-mRNA-1:exon:3531;Parent=Msa0054800-mRNA-1 |
| chr1_2 | exon | 9494642 | 9494901 | 9494642 | ID=Msa0054800-mRNA-1:exon:3530;Parent=Msa0054800-mRNA-1 |
| chr1_2 | exon | 9496010 | 9496626 | 9496010 | ID=Msa0054800-mRNA-1:exon:3529;Parent=Msa0054800-mRNA-1 |
| chr1_2 | five_prime_UTR | 9496389 | 9496626 | 9496389 | ID=Msa0054800-mRNA-1:five_prime_utr;Parent=Msa0054800-mRNA-1 |
| chr1_2 | CDS | 9496010 | 9496388 | 9496010 | ID=Msa0054800-mRNA-1:cds;Parent=Msa0054800-mRNA-1 |
| chr1_2 | CDS | 9494642 | 9494901 | 9494642 | ID=Msa0054800-mRNA-1:cds;Parent=Msa0054800-mRNA-1 |
| chr1_2 | CDS | 9494436 | 9494531 | 9494436 | ID=Msa0054800-mRNA-1:cds;Parent=Msa0054800-mRNA-1 |
| chr1_2 | CDS | 9494010 | 9494180 | 9494010 | ID=Msa0054800-mRNA-1:cds;Parent=Msa0054800-mRNA-1 |
| chr1_2 | CDS | 9492096 | 9492704 | 9492096 | ID=Msa0054800-mRNA-1:cds;Parent=Msa0054800-mRNA-1 |
| chr1_2 | three_prime_UTR | 9492079 | 9492095 | 9492079 | ID=Msa0054800-mRNA-1:three_prime_utr;Parent=Msa0054800-mRNA-1 |
| chr1_2 | three_prime_UTR | 9491890 | 9492052 | 9491890 | ID=Msa0054800-mRNA-1:three_prime_utr;Parent=Msa0054800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
