AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006170 MtrunA17_Chr1g0149941 95.930 516 17 3 1 513 46 560 0.0 1001
Msa0006170 MtrunA17_Chr3g0137061 65.370 514 158 7 1 513 1 495 0.0 597
Msa0006170 MtrunA17_Chr2g0283691 34.097 393 217 11 125 513 86 440 1.48e-42 157
Msa0006170 MtrunA17_Chr8g0377151 30.097 309 197 6 113 413 415 712 1.20e-32 132
Msa0006170 MtrunA17_Chr4g0031431 32.847 274 164 8 141 409 368 626 1.22e-26 114
Msa0006170 MtrunA17_Chr3g0122721 27.885 312 207 6 111 415 412 712 1.27e-25 111
Msa0006170 MtrunA17_Chr1g0152561 27.869 366 236 12 56 418 3 343 2.64e-25 107
Msa0006170 MtrunA17_Chr5g0435041 28.571 371 222 10 125 487 20 355 4.04e-24 103
Msa0006170 MtrunA17_Chr1g0183781 32.404 287 180 8 125 410 440 713 1.64e-23 104
Msa0006170 MtrunA17_Chr4g0044411 30.627 271 174 6 142 410 389 647 6.19e-23 102
Msa0006170 MtrunA17_Chr3g0106931 31.615 291 185 7 124 413 552 829 9.97e-23 102
Msa0006170 MtrunA17_Chr7g0261371 29.617 287 188 7 125 410 514 787 6.27e-22 99.8
Msa0006170 MtrunA17_Chr7g0237931 31.227 269 173 5 141 409 349 605 8.69e-21 95.9
Msa0006170 MtrunA17_Chr1g0199321 31.560 282 179 6 136 415 355 624 3.18e-20 94.4
Msa0006170 MtrunA17_Chr7g0248251 30.147 272 176 6 141 410 382 641 4.98e-20 93.6
Msa0006170 MtrunA17_Chr3g0111451 28.796 382 224 12 121 497 44 382 8.41e-20 91.7
Msa0006170 MtrunA17_Chr5g0429231 32.601 273 169 4 143 410 51 313 7.39e-19 88.2
Msa0006170 MtrunA17_Chr3g0134761 27.551 294 194 9 123 410 49 329 7.53e-18 85.1
Msa0006170 MtrunA17_Chr5g0437411 32.394 213 132 5 141 350 420 623 8.42e-18 86.7
Msa0006170 MtrunA17_Chr2g0290151 28.328 293 196 7 120 410 169 449 1.32e-16 82.4
Msa0006170 MtrunA17_Chr6g0449461 26.552 290 197 5 126 410 3 281 5.19e-15 76.3
Msa0006170 MtrunA17_Chr2g0284461 26.573 286 190 7 144 423 414 685 2.33e-12 69.7
Msa0006170 MtrunA17_Chr3g0118001 25.839 298 200 7 115 410 208 486 3.09e-12 68.9
Msa0006170 MtrunA17_Chr4g0071261 75.926 54 13 0 106 159 1 54 1.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006170 AT4G31890.3 59.480 538 173 13 1 513 1 518 0.0 553
Msa0006170 AT4G31890.2 59.480 538 173 13 1 513 1 518 0.0 553
Msa0006170 AT4G31890.1 59.480 538 173 13 1 513 1 518 0.0 553
Msa0006170 AT2G25130.1 57.393 514 161 16 1 503 1 467 4.51e-172 494
Msa0006170 AT2G27430.1 31.735 438 265 10 78 513 33 438 3.00e-42 156
Msa0006170 AT1G67530.2 30.464 302 192 5 122 416 422 712 3.62e-31 128
Msa0006170 AT1G67530.1 30.464 302 192 5 122 416 422 712 3.62e-31 128
Msa0006170 AT1G67530.4 30.464 302 192 5 122 416 422 712 3.62e-31 128
Msa0006170 AT1G24330.1 29.532 342 213 7 109 433 399 729 6.62e-30 124
Msa0006170 AT1G24330.2 29.532 342 213 7 109 433 399 729 6.62e-30 124
Msa0006170 AT2G23140.3 31.579 342 212 11 71 410 306 627 1.17e-26 114
Msa0006170 AT2G23140.5 31.579 342 212 11 71 410 306 627 1.17e-26 114
Msa0006170 AT2G23140.1 31.579 342 212 11 71 410 498 819 5.00e-26 112
Msa0006170 AT2G23140.2 31.579 342 212 11 71 410 495 816 5.81e-26 112
Msa0006170 AT2G23140.4 31.579 342 212 11 71 410 495 816 5.81e-26 112
Msa0006170 AT3G46510.1 32.847 274 164 8 141 409 369 627 3.42e-25 110
Msa0006170 AT1G27910.1 29.321 324 211 7 94 410 391 703 7.21e-25 109
Msa0006170 AT2G28830.1 31.962 316 185 11 112 419 279 572 1.45e-24 107
Msa0006170 AT1G71020.2 32.117 274 170 7 141 410 210 471 7.18e-22 99.0
Msa0006170 AT3G54790.2 31.650 297 182 10 127 415 440 723 1.06e-21 99.4
Msa0006170 AT1G23030.1 31.868 273 171 7 141 410 348 608 1.07e-21 99.0
Msa0006170 AT1G71020.1 32.117 274 170 7 141 410 358 619 1.15e-21 99.0
Msa0006170 AT3G54790.3 31.650 297 182 10 127 415 476 759 1.36e-21 99.4
Msa0006170 AT3G54790.1 31.650 297 182 10 127 415 476 759 1.36e-21 99.4
Msa0006170 AT3G54850.1 30.605 281 181 6 140 418 361 629 3.69e-21 97.4
Msa0006170 AT5G67340.1 25.330 379 258 8 36 413 346 700 6.03e-21 97.1
Msa0006170 AT5G67340.2 25.330 379 258 8 36 413 346 700 6.03e-21 97.1
Msa0006170 AT3G01400.1 28.623 276 183 7 140 413 79 342 1.19e-20 94.0
Msa0006170 AT3G03440.1 26.757 370 226 11 129 488 69 403 8.95e-18 85.9
Msa0006170 AT5G58680.1 29.252 294 189 9 125 413 62 341 1.22e-16 82.0
Msa0006170 AT5G42340.1 30.370 270 174 6 140 407 395 652 6.59e-16 81.3
Msa0006170 AT4G12710.1 30.576 278 176 5 141 410 62 330 7.19e-15 77.0
Msa0006170 AT4G16490.1 26.708 322 220 8 93 410 152 461 2.87e-13 72.4
Msa0006170 AT5G14510.1 26.908 249 166 8 168 410 41 279 1.49e-12 69.3
Msa0006170 AT1G29340.1 27.019 322 210 8 125 433 411 720 7.89e-11 65.1

Find 139 sgRNAs with CRISPR-Local

Find 335 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGAGTTGTCGCTTAT+TGG 0.139222 1_1:-8960669 Msa0006170:CDS
GGCCAATATTCAGTTTATTT+TGG 0.139500 1_1:-8960961 Msa0006170:CDS
TGGTAAGATTGCATTGTTTC+TGG 0.144110 1_1:-8960084 Msa0006170:three_prime_UTR
GATTCGAATAAACCGATAAT+TGG 0.146060 1_1:-8961104 Msa0006170:CDS
CTGAAGAGTTCTAACTAAAA+AGG 0.175660 1_1:+8961064 None:intergenic
CCTTTCAATCCTTAGCAATT+TGG 0.178700 1_1:-8960877 Msa0006170:CDS
GACGATGAAGTTCCGCAAAT+TGG 0.211163 1_1:+8960534 None:intergenic
TATTTCTGGTTTAGGTTTCT+TGG 0.217126 1_1:-8960104 Msa0006170:three_prime_UTR
ATAGTTGTAAAATATATTTC+TGG 0.223874 1_1:-8960118 Msa0006170:three_prime_UTR
GTAAAATATATTTCTGGTTT+AGG 0.249032 1_1:-8960112 Msa0006170:three_prime_UTR
CCCGGATGTGTTTCCTATCT+TGG 0.249308 1_1:-8960817 Msa0006170:CDS
GGGAACTACAACGGAAATTT+AGG 0.256409 1_1:-8960573 Msa0006170:CDS
GATAAAGGGAAACAGGTTTC+AGG 0.257229 1_1:-8960594 Msa0006170:CDS
GTGGGAGAATGTTGGTGTTT+TGG 0.267693 1_1:+8962276 None:intergenic
TTCCAAAATAAACTGAATAT+TGG 0.285924 1_1:+8960959 None:intergenic
AATGCTCGCTAAGGAGAATT+TGG 0.287918 1_1:-8961894 Msa0006170:CDS
TGAGGTTTCCGACGTTGTTC+CGG 0.317043 1_1:+8962326 None:intergenic
GAGAATGGATAAAGGGAAAC+AGG 0.335052 1_1:-8960601 Msa0006170:CDS
ATAAAGACTAACATACATTA+TGG 0.335251 1_1:+8960243 None:intergenic
GAAAGTTTGAGAATGGATAA+AGG 0.340228 1_1:-8960609 Msa0006170:CDS
TTACAATCTTTCAATCTTCC+CGG 0.346976 1_1:-8960982 Msa0006170:CDS
ACGATGAAGTTCCGCAAATT+GGG 0.353654 1_1:+8960535 None:intergenic
GCAGCTGAAGACCCAATTAT+CGG 0.368315 1_1:+8961092 None:intergenic
CTCTACGCATTGCTCAATCT+TGG 0.375202 1_1:-8961782 Msa0006170:CDS
TCTTGGTCGATGTATTGAAT+TGG 0.380089 1_1:-8960800 Msa0006170:CDS
TCTCCCACCACTTCCGTCTC+TGG 0.384503 1_1:-8962261 Msa0006170:CDS
GTTATGTCGCATAAATCTTA+TGG 0.386596 1_1:-8960732 Msa0006170:CDS
AGTTTCTCCGATTTCACATT+CGG 0.396316 1_1:+8962064 None:intergenic
AAAGTTTGAGAATGGATAAA+GGG 0.400322 1_1:-8960608 Msa0006170:CDS
TGGTGGAACGGTGGTGGTGG+TGG 0.401730 1_1:+8962296 None:intergenic
ACGGCGGCGGTGGTTGTAAC+GGG 0.402263 1_1:+8962171 None:intergenic
GAAACGGGCGTCAAGGCTAT+TGG 0.403441 1_1:-8960631 Msa0006170:CDS
TTCAAAACCGAATGTGAAAT+CGG 0.408736 1_1:-8962071 Msa0006170:CDS
AAAGAAGCCATTGTTAAAGT+TGG 0.415455 1_1:-8961227 Msa0006170:CDS
TTCAATACATCGACCAAGAT+AGG 0.418350 1_1:+8960804 None:intergenic
ATCTTCAGATGGTATTGATT+CGG 0.420177 1_1:-8961174 Msa0006170:CDS
GAATGATTCACCTGAATGTC+AGG 0.430700 1_1:-8960778 Msa0006170:CDS
GCTATTGGAAAGTTTGAGAA+TGG 0.435830 1_1:-8960616 Msa0006170:CDS
AGGAGGAGGAAAAGAGTGTT+CGG 0.438802 1_1:-8960487 Msa0006170:CDS
ATTCGAATAAACCGATAATT+GGG 0.445804 1_1:-8961103 Msa0006170:CDS
TCTTCTGAACATGGCGGAGA+TGG 0.446454 1_1:-8962035 Msa0006170:CDS
TACAACTTTGACTCAGAAAC+GGG 0.448428 1_1:-8960646 Msa0006170:CDS
GCGGTGGTTGTAACGGGAGG+TGG 0.458786 1_1:+8962177 None:intergenic
CCAAATTGCTAAGGATTGAA+AGG 0.463067 1_1:+8960877 None:intergenic
TTCACCTGAATGTCAGGAAA+AGG 0.468793 1_1:-8960772 Msa0006170:CDS
CCAGATGGAGGAGGAGGAGG+AGG 0.469128 1_1:-8960501 Msa0006170:CDS
TTCAGTGTCATATTCGTTGA+AGG 0.469707 1_1:+8962144 None:intergenic
AAACCAGATGGAGGAGGAGG+AGG 0.478442 1_1:-8960504 Msa0006170:CDS
TACGGCGGCGGTGGTTGTAA+CGG 0.478709 1_1:+8962170 None:intergenic
TGAAGGTGCTACGGCGGCGG+TGG 0.481423 1_1:+8962161 None:intergenic
TTTGCATGAGGAAGATGATT+CGG 0.481809 1_1:-8961948 Msa0006170:CDS
AAAATAAACTGAATATTGGC+CGG 0.484693 1_1:+8960963 None:intergenic
ACCAAGATAGGAAACACATC+CGG 0.487266 1_1:+8960816 None:intergenic
ACTGTCTCTGCCCCAATTTG+CGG 0.487673 1_1:-8960546 Msa0006170:CDS
AAGGAGAATTTGGAAGTAAG+AGG 0.491585 1_1:-8961884 Msa0006170:CDS
CACAATCCCTGCCTCTATCA+TGG 0.492440 1_1:+8960698 None:intergenic
GTACAACTTTGACTCAGAAA+CGG 0.493349 1_1:-8960647 Msa0006170:CDS
AAGCAGGCCATGATAGAGGC+AGG 0.498131 1_1:-8960705 Msa0006170:CDS
GGTGGTGGTGGCCGAGAATG+AGG 0.498770 1_1:+8962308 None:intergenic
AGAAGAGGAAGCGAAGAAGA+AGG 0.499264 1_1:-8962008 Msa0006170:CDS
AAATAAACTGAATATTGGCC+GGG 0.503485 1_1:+8960964 None:intergenic
GCATTGCTCAATCTTGGAAT+CGG 0.503671 1_1:-8961776 Msa0006170:CDS
CTCCGCCATGTTCAGAAGAT+CGG 0.507404 1_1:+8962039 None:intergenic
AACGTCGGAAACCTCATTCT+CGG 0.508681 1_1:-8962319 Msa0006170:CDS
AGTTCCAGAGACGGAAGTGG+TGG 0.509557 1_1:+8962257 None:intergenic
ACATTGAAAATTCTTCAGAA+TGG 0.511348 1_1:+8960294 None:intergenic
CAATGTAGTTCATCGGAGAA+TGG 0.515631 1_1:-8962359 Msa0006170:exon
TCTCCGATGAACTACATTGA+AGG 0.516022 1_1:+8962363 None:intergenic
ATCTTCCACGCCGTCAGCTG+CGG 0.516615 1_1:-8962205 Msa0006170:CDS
CCGTTTGTCGAAGGAGGAAG+CGG 0.517294 1_1:+8962108 None:intergenic
AACAGAACCAACTTTAACAA+TGG 0.518209 1_1:+8961220 None:intergenic
AAAGGCAATAAGTGCTGTCC+CGG 0.518431 1_1:-8960835 Msa0006170:CDS
CTCCCTTCAATGTAGTTCAT+CGG 0.519040 1_1:-8962366 Msa0006170:five_prime_UTR
TTTCAATGTGCAGTGAGTCT+AGG 0.519063 1_1:-8960280 Msa0006170:three_prime_UTR
ATAAAGGGAAACAGGTTTCA+GGG 0.521033 1_1:-8960593 Msa0006170:CDS
GGCTATATCTTGAGGCAAGT+TGG 0.522294 1_1:+8960368 None:intergenic
AAGCTTATTGAATCTTCAGA+TGG 0.525195 1_1:-8961185 Msa0006170:CDS
ATCAACTAGAGCGGGTAGAA+AGG 0.526061 1_1:-8960853 Msa0006170:CDS
TTCCACGCCGTCAGCTGCGG+TGG 0.526745 1_1:-8962202 Msa0006170:CDS
CGTTGAAGGTGCTACGGCGG+CGG 0.526909 1_1:+8962158 None:intergenic
GATAAACTCGATTGGCGACA+TGG 0.527711 1_1:-8960916 Msa0006170:CDS
TGACAAGCAGGCCATGATAG+AGG 0.539644 1_1:-8960709 Msa0006170:CDS
ATTCTGTTGCCGTTTGTCGA+AGG 0.541771 1_1:+8962099 None:intergenic
GAGAGTTCCAGAGACGGAAG+TGG 0.541905 1_1:+8962254 None:intergenic
CGGAAGTGGTGGGAGAATGT+TGG 0.542844 1_1:+8962268 None:intergenic
CCAAGATAGGAAACACATCC+GGG 0.543957 1_1:+8960817 None:intergenic
GAGACGACGGAGGGAGGCGA+TGG 0.543987 1_1:+8962228 None:intergenic
CCGCTTCCTCCTTCGACAAA+CGG 0.544569 1_1:-8962108 Msa0006170:CDS
TAAATCTTATGGTGACAAGC+AGG 0.546845 1_1:-8960721 Msa0006170:CDS
GAATCGAGCATTGCGACTAA+CGG 0.551485 1_1:+8961833 None:intergenic
AGAGGAACACTTTCAATGCT+CGG 0.553240 1_1:-8961866 Msa0006170:CDS
TTATATATTTATATATTGTG+TGG 0.555444 1_1:+8962469 None:intergenic
GGTGGCGCCACCGCAGCTGA+CGG 0.558285 1_1:+8962195 None:intergenic
CTCCGATGAACTACATTGAA+GGG 0.558830 1_1:+8962364 None:intergenic
CACCGTGAGAATGCTCGCTA+AGG 0.563128 1_1:-8961903 Msa0006170:CDS
GCAAAACCAGATGGAGGAGG+AGG 0.565741 1_1:-8960507 Msa0006170:CDS
CTCCTTAGCGAGCATTCTCA+CGG 0.567241 1_1:+8961901 None:intergenic
CGCCACCGCAGCTGACGGCG+TGG 0.567727 1_1:+8962200 None:intergenic
GTGACTTAAAATGATCTGAT+GGG 0.568459 1_1:+8960346 None:intergenic
CTGTTGCCGTTTGTCGAAGG+AGG 0.569127 1_1:+8962102 None:intergenic
AGTGACTTAAAATGATCTGA+TGG 0.569212 1_1:+8960345 None:intergenic
TCGTCGTGTGCAAAACCAGA+TGG 0.569844 1_1:-8960516 Msa0006170:CDS
CATGAGGAAAATTGTGAAGA+GGG 0.571586 1_1:-8960391 Msa0006170:CDS
GAAACTTAAGAAGCTTGTGA+AGG 0.574556 1_1:-8961972 Msa0006170:CDS
CCAATCGAGTTTATCAGAAA+CGG 0.579904 1_1:+8960924 None:intergenic
TGAGTTTGCAAAACAACATG+AGG 0.582736 1_1:-8960407 Msa0006170:CDS
CATATTCGTTGAAGGTGCTA+CGG 0.583082 1_1:+8962152 None:intergenic
TAGTTGATACCAAATTGCTA+AGG 0.585434 1_1:+8960868 None:intergenic
GAAGATGAGACGACGGAGGG+AGG 0.594413 1_1:+8962222 None:intergenic
ATAAACTCGATTGGCGACAT+GGG 0.594657 1_1:-8960915 Msa0006170:CDS
TGACTCAGAAACGGGCGTCA+AGG 0.595671 1_1:-8960638 Msa0006170:CDS
AATTTGGTATCAACTAGAGC+GGG 0.598416 1_1:-8960861 Msa0006170:CDS
TCGAGCATTGCGACTAACGG+TGG 0.599056 1_1:+8961836 None:intergenic
GGAGAATGGCAAACTATCAC+CGG 0.599573 1_1:-8962345 Msa0006170:exon
CCGTTTCTGATAAACTCGAT+TGG 0.600541 1_1:-8960924 Msa0006170:CDS
AACTATCACCGGAACAACGT+CGG 0.600978 1_1:-8962334 Msa0006170:CDS
TTCAGATGGTATTGATTCGG+CGG 0.602952 1_1:-8961171 Msa0006170:CDS
CGATGAAGTTCCGCAAATTG+GGG 0.609312 1_1:+8960536 None:intergenic
GTTCCAGAGACGGAAGTGGT+GGG 0.614760 1_1:+8962258 None:intergenic
AGGAAGATGATTCGGTGAAG+CGG 0.615812 1_1:-8961940 Msa0006170:CDS
ACATGAGGAAAATTGTGAAG+AGG 0.616000 1_1:-8960392 Msa0006170:CDS
CAATTTGGTATCAACTAGAG+CGG 0.617550 1_1:-8960862 Msa0006170:CDS
GGCGGAGATGGAGACAGAAG+AGG 0.621626 1_1:-8962023 Msa0006170:CDS
ACTCTCCGATCTTCTGAACA+TGG 0.624622 1_1:-8962044 Msa0006170:CDS
TGTGCAAAACCAGATGGAGG+AGG 0.627739 1_1:-8960510 Msa0006170:CDS
TGGAGAGAGAGTTCCAGAGA+CGG 0.628731 1_1:+8962248 None:intergenic
GTGGAAGATGAGACGACGGA+GGG 0.638181 1_1:+8962219 None:intergenic
GCTTGTGAAGGATTTGCATG+AGG 0.641834 1_1:-8961960 Msa0006170:CDS
TCTGATGGGGCTATATCTTG+AGG 0.642996 1_1:+8960360 None:intergenic
GCGGCGGTGGTTGTAACGGG+AGG 0.647866 1_1:+8962174 None:intergenic
ATTCGTTGAAGGTGCTACGG+CGG 0.652805 1_1:+8962155 None:intergenic
AGCAGGCCATGATAGAGGCA+GGG 0.665017 1_1:-8960704 Msa0006170:CDS
TGACTTAAAATGATCTGATG+GGG 0.666644 1_1:+8960347 None:intergenic
TCGTGTGCAAAACCAGATGG+AGG 0.672294 1_1:-8960513 Msa0006170:CDS
CGTGGAAGATGAGACGACGG+AGG 0.676052 1_1:+8962218 None:intergenic
CAGGTTTCAGGGAACTACAA+CGG 0.687032 1_1:-8960582 Msa0006170:CDS
CGGCGTGGAAGATGAGACGA+CGG 0.695582 1_1:+8962215 None:intergenic
CTTAGCGAGCATTCTCACGG+TGG 0.717190 1_1:+8961904 None:intergenic
CTCCGATCTTCTGAACATGG+CGG 0.718028 1_1:-8962041 Msa0006170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTCAGTATTTATATAT+TGG + chr1_1:8960081-8960100 None:intergenic 10.0%
!!! AAAAAGTTCATTTTTTTATT+TGG - chr1_1:8961245-8961264 Msa0006170:intron 10.0%
!!! AAAAGTTCATTTTTTTATTT+GGG - chr1_1:8961246-8961265 Msa0006170:intron 10.0%
!! TTATATATTTATATATTGTG+TGG + chr1_1:8960054-8960073 None:intergenic 10.0%
!!! TATTTTCAGTATTTATATAT+TGG + chr1_1:8960081-8960100 None:intergenic 10.0%
!!! AAAAAGTTCATTTTTTTATT+TGG - chr1_1:8961245-8961264 Msa0006170:intron 10.0%
!!! AAAAGTTCATTTTTTTATTT+GGG - chr1_1:8961246-8961265 Msa0006170:intron 10.0%
!! ATAGTTGTAAAATATATTTC+TGG - chr1_1:8962402-8962421 Msa0006170:five_prime_UTR 15.0%
!! ATAGTTGTAAAATATATTTC+TGG - chr1_1:8962402-8962421 Msa0006170:five_prime_UTR 15.0%
!!! TTGTTAACTTTCTTTTTTTG+TGG - chr1_1:8960938-8960957 Msa0006170:CDS 20.0%
!! TTCCAAAATAAACTGAATAT+TGG + chr1_1:8961564-8961583 None:intergenic 20.0%
!!! AAAGGTTTCATATATTTTGA+TGG - chr1_1:8961766-8961785 Msa0006170:intron 20.0%
!! ATAAAGACTAACATACATTA+TGG + chr1_1:8962280-8962299 None:intergenic 20.0%
!!! GTAAAATATATTTCTGGTTT+AGG - chr1_1:8962408-8962427 Msa0006170:five_prime_UTR 20.0%
!!! TTGTTAACTTTCTTTTTTTG+TGG - chr1_1:8960938-8960957 Msa0006170:CDS 20.0%
!! TTCCAAAATAAACTGAATAT+TGG + chr1_1:8961564-8961583 None:intergenic 20.0%
!!! AAAGGTTTCATATATTTTGA+TGG - chr1_1:8961766-8961785 Msa0006170:intron 20.0%
!! ATAAAGACTAACATACATTA+TGG + chr1_1:8962280-8962299 None:intergenic 20.0%
!!! GTAAAATATATTTCTGGTTT+AGG - chr1_1:8962408-8962427 Msa0006170:five_prime_UTR 20.0%
!!! AACTTTCTTTTTTTGTGGTT+AGG - chr1_1:8960943-8960962 Msa0006170:CDS 25.0%
!! TTTTTGTGGTTAGGTAATTT+TGG - chr1_1:8960952-8960971 Msa0006170:CDS 25.0%
!!! CAAGCATGTGATTTTAATTT+TGG - chr1_1:8961058-8961077 Msa0006170:CDS 25.0%
! ATATGTATGATTGTGATGTT+AGG - chr1_1:8961211-8961230 Msa0006170:CDS 25.0%
! ATTCGAATAAACCGATAATT+GGG - chr1_1:8961417-8961436 Msa0006170:intron 25.0%
!! TGAAGAGTTCTAACTAAAAA+GGG + chr1_1:8961458-8961477 None:intergenic 25.0%
! AAAATAAACTGAATATTGGC+CGG + chr1_1:8961560-8961579 None:intergenic 25.0%
!!! GTTTATTTTGGAAACTGATT+TGG - chr1_1:8961571-8961590 Msa0006170:intron 25.0%
! AAAGTTTGAGAATGGATAAA+GGG - chr1_1:8961912-8961931 Msa0006170:CDS 25.0%
! ACATTGAAAATTCTTCAGAA+TGG + chr1_1:8962229-8962248 None:intergenic 25.0%
!!! AACTTTCTTTTTTTGTGGTT+AGG - chr1_1:8960943-8960962 Msa0006170:CDS 25.0%
!! TTTTTGTGGTTAGGTAATTT+TGG - chr1_1:8960952-8960971 Msa0006170:CDS 25.0%
!!! CAAGCATGTGATTTTAATTT+TGG - chr1_1:8961058-8961077 Msa0006170:CDS 25.0%
! ATATGTATGATTGTGATGTT+AGG - chr1_1:8961211-8961230 Msa0006170:CDS 25.0%
! ATTCGAATAAACCGATAATT+GGG - chr1_1:8961417-8961436 Msa0006170:intron 25.0%
!! TGAAGAGTTCTAACTAAAAA+GGG + chr1_1:8961458-8961477 None:intergenic 25.0%
! AAAATAAACTGAATATTGGC+CGG + chr1_1:8961560-8961579 None:intergenic 25.0%
!!! GTTTATTTTGGAAACTGATT+TGG - chr1_1:8961571-8961590 Msa0006170:intron 25.0%
! AAAGTTTGAGAATGGATAAA+GGG - chr1_1:8961912-8961931 Msa0006170:CDS 25.0%
! ACATTGAAAATTCTTCAGAA+TGG + chr1_1:8962229-8962248 None:intergenic 25.0%
CTGAAAATAAACCAAAAACG+TGG - chr1_1:8960092-8960111 Msa0006170:three_prime_UTR 30.0%
TTCAAAACCGAATGTGAAAT+CGG - chr1_1:8960449-8960468 Msa0006170:CDS 30.0%
TAGATACAACTGTAAGATCA+CGG - chr1_1:8960861-8960880 Msa0006170:CDS 30.0%
AAAGAAGCCATTGTTAAAGT+TGG - chr1_1:8961293-8961312 Msa0006170:intron 30.0%
AACAGAACCAACTTTAACAA+TGG + chr1_1:8961303-8961322 None:intergenic 30.0%
AAGCTTATTGAATCTTCAGA+TGG - chr1_1:8961335-8961354 Msa0006170:intron 30.0%
!! ATCTTCAGATGGTATTGATT+CGG - chr1_1:8961346-8961365 Msa0006170:intron 30.0%
! TTTTCTTGGATTAAGTGCTT+TGG - chr1_1:8961394-8961413 Msa0006170:intron 30.0%
GATTCGAATAAACCGATAAT+TGG - chr1_1:8961416-8961435 Msa0006170:intron 30.0%
! CTGAAGAGTTCTAACTAAAA+AGG + chr1_1:8961459-8961478 None:intergenic 30.0%
TTACAATCTTTCAATCTTCC+CGG - chr1_1:8961538-8961557 Msa0006170:intron 30.0%
AAATAAACTGAATATTGGCC+GGG + chr1_1:8961559-8961578 None:intergenic 30.0%
! GGCCAATATTCAGTTTATTT+TGG - chr1_1:8961559-8961578 Msa0006170:intron 30.0%
! TAGTTGATACCAAATTGCTA+AGG + chr1_1:8961655-8961674 None:intergenic 30.0%
GTTATGTCGCATAAATCTTA+TGG - chr1_1:8961788-8961807 Msa0006170:CDS 30.0%
GAAAGTTTGAGAATGGATAA+AGG - chr1_1:8961911-8961930 Msa0006170:CDS 30.0%
!!! TGTTGTTTTGCAAACTCAAT+TGG + chr1_1:8962111-8962130 None:intergenic 30.0%
TGACTTAAAATGATCTGATG+GGG + chr1_1:8962176-8962195 None:intergenic 30.0%
GTGACTTAAAATGATCTGAT+GGG + chr1_1:8962177-8962196 None:intergenic 30.0%
AGTGACTTAAAATGATCTGA+TGG + chr1_1:8962178-8962197 None:intergenic 30.0%
!! TATTTCTGGTTTAGGTTTCT+TGG - chr1_1:8962416-8962435 Msa0006170:five_prime_UTR 30.0%
CTGAAAATAAACCAAAAACG+TGG - chr1_1:8960092-8960111 Msa0006170:three_prime_UTR 30.0%
TTCAAAACCGAATGTGAAAT+CGG - chr1_1:8960449-8960468 Msa0006170:CDS 30.0%
TAGATACAACTGTAAGATCA+CGG - chr1_1:8960861-8960880 Msa0006170:CDS 30.0%
AAAGAAGCCATTGTTAAAGT+TGG - chr1_1:8961293-8961312 Msa0006170:intron 30.0%
AACAGAACCAACTTTAACAA+TGG + chr1_1:8961303-8961322 None:intergenic 30.0%
AAGCTTATTGAATCTTCAGA+TGG - chr1_1:8961335-8961354 Msa0006170:intron 30.0%
!! ATCTTCAGATGGTATTGATT+CGG - chr1_1:8961346-8961365 Msa0006170:intron 30.0%
! TTTTCTTGGATTAAGTGCTT+TGG - chr1_1:8961394-8961413 Msa0006170:intron 30.0%
GATTCGAATAAACCGATAAT+TGG - chr1_1:8961416-8961435 Msa0006170:intron 30.0%
! CTGAAGAGTTCTAACTAAAA+AGG + chr1_1:8961459-8961478 None:intergenic 30.0%
TTACAATCTTTCAATCTTCC+CGG - chr1_1:8961538-8961557 Msa0006170:intron 30.0%
AAATAAACTGAATATTGGCC+GGG + chr1_1:8961559-8961578 None:intergenic 30.0%
! GGCCAATATTCAGTTTATTT+TGG - chr1_1:8961559-8961578 Msa0006170:intron 30.0%
! TAGTTGATACCAAATTGCTA+AGG + chr1_1:8961655-8961674 None:intergenic 30.0%
GTTATGTCGCATAAATCTTA+TGG - chr1_1:8961788-8961807 Msa0006170:CDS 30.0%
GAAAGTTTGAGAATGGATAA+AGG - chr1_1:8961911-8961930 Msa0006170:CDS 30.0%
!!! TGTTGTTTTGCAAACTCAAT+TGG + chr1_1:8962111-8962130 None:intergenic 30.0%
TGACTTAAAATGATCTGATG+GGG + chr1_1:8962176-8962195 None:intergenic 30.0%
GTGACTTAAAATGATCTGAT+GGG + chr1_1:8962177-8962196 None:intergenic 30.0%
AGTGACTTAAAATGATCTGA+TGG + chr1_1:8962178-8962197 None:intergenic 30.0%
!! TATTTCTGGTTTAGGTTTCT+TGG - chr1_1:8962416-8962435 Msa0006170:five_prime_UTR 30.0%
AAAGAGAGAGAGAGTGAAAA+GGG + chr1_1:8960128-8960147 None:intergenic 35.0%
TTCAGTGTCATATTCGTTGA+AGG + chr1_1:8960379-8960398 None:intergenic 35.0%
AGTTTCTCCGATTTCACATT+CGG + chr1_1:8960459-8960478 None:intergenic 35.0%
GAAACTTAAGAAGCTTGTGA+AGG - chr1_1:8960548-8960567 Msa0006170:CDS 35.0%
TTTGCATGAGGAAGATGATT+CGG - chr1_1:8960572-8960591 Msa0006170:CDS 35.0%
AAGGAGAATTTGGAAGTAAG+AGG - chr1_1:8960636-8960655 Msa0006170:CDS 35.0%
AGATACAACTGTAAGATCAC+GGG - chr1_1:8960862-8960881 Msa0006170:CDS 35.0%
TTGTGATGTTAGGAGAATAG+TGG - chr1_1:8961221-8961240 Msa0006170:CDS 35.0%
CCAATCGAGTTTATCAGAAA+CGG + chr1_1:8961599-8961618 None:intergenic 35.0%
CCAAATTGCTAAGGATTGAA+AGG + chr1_1:8961646-8961665 None:intergenic 35.0%
CCTTTCAATCCTTAGCAATT+TGG - chr1_1:8961643-8961662 Msa0006170:intron 35.0%
CAATTTGGTATCAACTAGAG+CGG - chr1_1:8961658-8961677 Msa0006170:intron 35.0%
AATTTGGTATCAACTAGAGC+GGG - chr1_1:8961659-8961678 Msa0006170:intron 35.0%
TTCAATACATCGACCAAGAT+AGG + chr1_1:8961719-8961738 None:intergenic 35.0%
TCTTGGTCGATGTATTGAAT+TGG - chr1_1:8961720-8961739 Msa0006170:intron 35.0%
TAAATCTTATGGTGACAAGC+AGG - chr1_1:8961799-8961818 Msa0006170:CDS 35.0%
GTACAACTTTGACTCAGAAA+CGG - chr1_1:8961873-8961892 Msa0006170:CDS 35.0%
TACAACTTTGACTCAGAAAC+GGG - chr1_1:8961874-8961893 Msa0006170:CDS 35.0%
GCTATTGGAAAGTTTGAGAA+TGG - chr1_1:8961904-8961923 Msa0006170:CDS 35.0%
ATAAAGGGAAACAGGTTTCA+GGG - chr1_1:8961927-8961946 Msa0006170:CDS 35.0%
TGAGTTTGCAAAACAACATG+AGG - chr1_1:8962113-8962132 Msa0006170:CDS 35.0%
ACATGAGGAAAATTGTGAAG+AGG - chr1_1:8962128-8962147 Msa0006170:CDS 35.0%
CATGAGGAAAATTGTGAAGA+GGG - chr1_1:8962129-8962148 Msa0006170:CDS 35.0%
TGGTAAGATTGCATTGTTTC+TGG - chr1_1:8962436-8962455 Msa0006170:five_prime_UTR 35.0%
AAAGAGAGAGAGAGTGAAAA+GGG + chr1_1:8960128-8960147 None:intergenic 35.0%
TTCAGTGTCATATTCGTTGA+AGG + chr1_1:8960379-8960398 None:intergenic 35.0%
AGTTTCTCCGATTTCACATT+CGG + chr1_1:8960459-8960478 None:intergenic 35.0%
GAAACTTAAGAAGCTTGTGA+AGG - chr1_1:8960548-8960567 Msa0006170:CDS 35.0%
TTTGCATGAGGAAGATGATT+CGG - chr1_1:8960572-8960591 Msa0006170:CDS 35.0%
AAGGAGAATTTGGAAGTAAG+AGG - chr1_1:8960636-8960655 Msa0006170:CDS 35.0%
AGATACAACTGTAAGATCAC+GGG - chr1_1:8960862-8960881 Msa0006170:CDS 35.0%
TTGTGATGTTAGGAGAATAG+TGG - chr1_1:8961221-8961240 Msa0006170:CDS 35.0%
CCAATCGAGTTTATCAGAAA+CGG + chr1_1:8961599-8961618 None:intergenic 35.0%
CCAAATTGCTAAGGATTGAA+AGG + chr1_1:8961646-8961665 None:intergenic 35.0%
CCTTTCAATCCTTAGCAATT+TGG - chr1_1:8961643-8961662 Msa0006170:intron 35.0%
CAATTTGGTATCAACTAGAG+CGG - chr1_1:8961658-8961677 Msa0006170:intron 35.0%
AATTTGGTATCAACTAGAGC+GGG - chr1_1:8961659-8961678 Msa0006170:intron 35.0%
TTCAATACATCGACCAAGAT+AGG + chr1_1:8961719-8961738 None:intergenic 35.0%
TCTTGGTCGATGTATTGAAT+TGG - chr1_1:8961720-8961739 Msa0006170:intron 35.0%
TAAATCTTATGGTGACAAGC+AGG - chr1_1:8961799-8961818 Msa0006170:CDS 35.0%
GTACAACTTTGACTCAGAAA+CGG - chr1_1:8961873-8961892 Msa0006170:CDS 35.0%
TACAACTTTGACTCAGAAAC+GGG - chr1_1:8961874-8961893 Msa0006170:CDS 35.0%
GCTATTGGAAAGTTTGAGAA+TGG - chr1_1:8961904-8961923 Msa0006170:CDS 35.0%
ATAAAGGGAAACAGGTTTCA+GGG - chr1_1:8961927-8961946 Msa0006170:CDS 35.0%
TGAGTTTGCAAAACAACATG+AGG - chr1_1:8962113-8962132 Msa0006170:CDS 35.0%
ACATGAGGAAAATTGTGAAG+AGG - chr1_1:8962128-8962147 Msa0006170:CDS 35.0%
CATGAGGAAAATTGTGAAGA+GGG - chr1_1:8962129-8962148 Msa0006170:CDS 35.0%
TGGTAAGATTGCATTGTTTC+TGG - chr1_1:8962436-8962455 Msa0006170:five_prime_UTR 35.0%
AACCAAAAACGTGGACTCAA+CGG - chr1_1:8960101-8960120 Msa0006170:three_prime_UTR 40.0%
GAAAGAGAGAGAGAGTGAAA+AGG + chr1_1:8960129-8960148 None:intergenic 40.0%
CTCCCTTCAATGTAGTTCAT+CGG - chr1_1:8960154-8960173 Msa0006170:three_prime_UTR 40.0%
CTCCGATGAACTACATTGAA+GGG + chr1_1:8960159-8960178 None:intergenic 40.0%
TCTCCGATGAACTACATTGA+AGG + chr1_1:8960160-8960179 None:intergenic 40.0%
CAATGTAGTTCATCGGAGAA+TGG - chr1_1:8960161-8960180 Msa0006170:three_prime_UTR 40.0%
!!! ATGTTGGTGTTTTGGTGGAA+CGG + chr1_1:8960239-8960258 None:intergenic 40.0%
!! CATATTCGTTGAAGGTGCTA+CGG + chr1_1:8960371-8960390 None:intergenic 40.0%
AATGCTCGCTAAGGAGAATT+TGG - chr1_1:8960626-8960645 Msa0006170:CDS 40.0%
AGAGGAACACTTTCAATGCT+CGG - chr1_1:8960654-8960673 Msa0006170:CDS 40.0%
GCATTGCTCAATCTTGGAAT+CGG - chr1_1:8960744-8960763 Msa0006170:CDS 40.0%
!! TTCAGATGGTATTGATTCGG+CGG - chr1_1:8961349-8961368 Msa0006170:intron 40.0%
! GCGATTGTTGCGAATTTTCT+TGG - chr1_1:8961380-8961399 Msa0006170:intron 40.0%
CCGTTTCTGATAAACTCGAT+TGG - chr1_1:8961596-8961615 Msa0006170:intron 40.0%
ATAAACTCGATTGGCGACAT+GGG - chr1_1:8961605-8961624 Msa0006170:intron 40.0%
ACCAAGATAGGAAACACATC+CGG + chr1_1:8961707-8961726 None:intergenic 40.0%
GAATGATTCACCTGAATGTC+AGG - chr1_1:8961742-8961761 Msa0006170:intron 40.0%
TTCACCTGAATGTCAGGAAA+AGG - chr1_1:8961748-8961767 Msa0006170:intron 40.0%
! GAAACCTTTTCCTGACATTC+AGG + chr1_1:8961755-8961774 None:intergenic 40.0%
! CTTCTTGAGTTGTCGCTTAT+TGG - chr1_1:8961851-8961870 Msa0006170:CDS 40.0%
GAGAATGGATAAAGGGAAAC+AGG - chr1_1:8961919-8961938 Msa0006170:CDS 40.0%
GATAAAGGGAAACAGGTTTC+AGG - chr1_1:8961926-8961945 Msa0006170:CDS 40.0%
GGGAACTACAACGGAAATTT+AGG - chr1_1:8961947-8961966 Msa0006170:CDS 40.0%
ACGATGAAGTTCCGCAAATT+GGG + chr1_1:8961988-8962007 None:intergenic 40.0%
TTTCAATGTGCAGTGAGTCT+AGG - chr1_1:8962240-8962259 Msa0006170:CDS 40.0%
AACCAAAAACGTGGACTCAA+CGG - chr1_1:8960101-8960120 Msa0006170:three_prime_UTR 40.0%
GAAAGAGAGAGAGAGTGAAA+AGG + chr1_1:8960129-8960148 None:intergenic 40.0%
CTCCCTTCAATGTAGTTCAT+CGG - chr1_1:8960154-8960173 Msa0006170:three_prime_UTR 40.0%
CTCCGATGAACTACATTGAA+GGG + chr1_1:8960159-8960178 None:intergenic 40.0%
TCTCCGATGAACTACATTGA+AGG + chr1_1:8960160-8960179 None:intergenic 40.0%
CAATGTAGTTCATCGGAGAA+TGG - chr1_1:8960161-8960180 Msa0006170:three_prime_UTR 40.0%
!!! ATGTTGGTGTTTTGGTGGAA+CGG + chr1_1:8960239-8960258 None:intergenic 40.0%
!! CATATTCGTTGAAGGTGCTA+CGG + chr1_1:8960371-8960390 None:intergenic 40.0%
AATGCTCGCTAAGGAGAATT+TGG - chr1_1:8960626-8960645 Msa0006170:CDS 40.0%
AGAGGAACACTTTCAATGCT+CGG - chr1_1:8960654-8960673 Msa0006170:CDS 40.0%
GCATTGCTCAATCTTGGAAT+CGG - chr1_1:8960744-8960763 Msa0006170:CDS 40.0%
!! TTCAGATGGTATTGATTCGG+CGG - chr1_1:8961349-8961368 Msa0006170:intron 40.0%
! GCGATTGTTGCGAATTTTCT+TGG - chr1_1:8961380-8961399 Msa0006170:intron 40.0%
CCGTTTCTGATAAACTCGAT+TGG - chr1_1:8961596-8961615 Msa0006170:intron 40.0%
ATAAACTCGATTGGCGACAT+GGG - chr1_1:8961605-8961624 Msa0006170:intron 40.0%
ACCAAGATAGGAAACACATC+CGG + chr1_1:8961707-8961726 None:intergenic 40.0%
GAATGATTCACCTGAATGTC+AGG - chr1_1:8961742-8961761 Msa0006170:intron 40.0%
TTCACCTGAATGTCAGGAAA+AGG - chr1_1:8961748-8961767 Msa0006170:intron 40.0%
! GAAACCTTTTCCTGACATTC+AGG + chr1_1:8961755-8961774 None:intergenic 40.0%
! CTTCTTGAGTTGTCGCTTAT+TGG - chr1_1:8961851-8961870 Msa0006170:CDS 40.0%
GAGAATGGATAAAGGGAAAC+AGG - chr1_1:8961919-8961938 Msa0006170:CDS 40.0%
GATAAAGGGAAACAGGTTTC+AGG - chr1_1:8961926-8961945 Msa0006170:CDS 40.0%
GGGAACTACAACGGAAATTT+AGG - chr1_1:8961947-8961966 Msa0006170:CDS 40.0%
ACGATGAAGTTCCGCAAATT+GGG + chr1_1:8961988-8962007 None:intergenic 40.0%
TTTCAATGTGCAGTGAGTCT+AGG - chr1_1:8962240-8962259 Msa0006170:CDS 40.0%
GGAGAATGGCAAACTATCAC+CGG - chr1_1:8960175-8960194 Msa0006170:three_prime_UTR 45.0%
AACTATCACCGGAACAACGT+CGG - chr1_1:8960186-8960205 Msa0006170:three_prime_UTR 45.0%
AACGTCGGAAACCTCATTCT+CGG - chr1_1:8960201-8960220 Msa0006170:three_prime_UTR 45.0%
!! GGAGAATGTTGGTGTTTTGG+TGG + chr1_1:8960244-8960263 None:intergenic 45.0%
!! GTGGGAGAATGTTGGTGTTT+TGG + chr1_1:8960247-8960266 None:intergenic 45.0%
! ATTCTGTTGCCGTTTGTCGA+AGG + chr1_1:8960424-8960443 None:intergenic 45.0%
ACTCTCCGATCTTCTGAACA+TGG - chr1_1:8960476-8960495 Msa0006170:CDS 45.0%
AGAAGAGGAAGCGAAGAAGA+AGG - chr1_1:8960512-8960531 Msa0006170:CDS 45.0%
GCTTGTGAAGGATTTGCATG+AGG - chr1_1:8960560-8960579 Msa0006170:CDS 45.0%
!! AGGAAGATGATTCGGTGAAG+CGG - chr1_1:8960580-8960599 Msa0006170:CDS 45.0%
! GAATCGAGCATTGCGACTAA+CGG + chr1_1:8960690-8960709 None:intergenic 45.0%
CTCTACGCATTGCTCAATCT+TGG - chr1_1:8960738-8960757 Msa0006170:CDS 45.0%
GCAGCTGAAGACCCAATTAT+CGG + chr1_1:8961431-8961450 None:intergenic 45.0%
GATAAACTCGATTGGCGACA+TGG - chr1_1:8961604-8961623 Msa0006170:intron 45.0%
ATCAACTAGAGCGGGTAGAA+AGG - chr1_1:8961667-8961686 Msa0006170:intron 45.0%
! AAAGGCAATAAGTGCTGTCC+CGG - chr1_1:8961685-8961704 Msa0006170:intron 45.0%
CCAAGATAGGAAACACATCC+GGG + chr1_1:8961706-8961725 None:intergenic 45.0%
CAGGTTTCAGGGAACTACAA+CGG - chr1_1:8961938-8961957 Msa0006170:CDS 45.0%
CGATGAAGTTCCGCAAATTG+GGG + chr1_1:8961987-8962006 None:intergenic 45.0%
GACGATGAAGTTCCGCAAAT+TGG + chr1_1:8961989-8962008 None:intergenic 45.0%
!! AGGAGGAGGAAAAGAGTGTT+CGG - chr1_1:8962033-8962052 Msa0006170:CDS 45.0%
GGCTATATCTTGAGGCAAGT+TGG + chr1_1:8962155-8962174 None:intergenic 45.0%
TCTGATGGGGCTATATCTTG+AGG + chr1_1:8962163-8962182 None:intergenic 45.0%
GGAGAATGGCAAACTATCAC+CGG - chr1_1:8960175-8960194 Msa0006170:three_prime_UTR 45.0%
AACTATCACCGGAACAACGT+CGG - chr1_1:8960186-8960205 Msa0006170:three_prime_UTR 45.0%
AACGTCGGAAACCTCATTCT+CGG - chr1_1:8960201-8960220 Msa0006170:three_prime_UTR 45.0%
!! GGAGAATGTTGGTGTTTTGG+TGG + chr1_1:8960244-8960263 None:intergenic 45.0%
!! GTGGGAGAATGTTGGTGTTT+TGG + chr1_1:8960247-8960266 None:intergenic 45.0%
! ATTCTGTTGCCGTTTGTCGA+AGG + chr1_1:8960424-8960443 None:intergenic 45.0%
ACTCTCCGATCTTCTGAACA+TGG - chr1_1:8960476-8960495 Msa0006170:CDS 45.0%
AGAAGAGGAAGCGAAGAAGA+AGG - chr1_1:8960512-8960531 Msa0006170:CDS 45.0%
GCTTGTGAAGGATTTGCATG+AGG - chr1_1:8960560-8960579 Msa0006170:CDS 45.0%
!! AGGAAGATGATTCGGTGAAG+CGG - chr1_1:8960580-8960599 Msa0006170:CDS 45.0%
! GAATCGAGCATTGCGACTAA+CGG + chr1_1:8960690-8960709 None:intergenic 45.0%
CTCTACGCATTGCTCAATCT+TGG - chr1_1:8960738-8960757 Msa0006170:CDS 45.0%
GCAGCTGAAGACCCAATTAT+CGG + chr1_1:8961431-8961450 None:intergenic 45.0%
GATAAACTCGATTGGCGACA+TGG - chr1_1:8961604-8961623 Msa0006170:intron 45.0%
ATCAACTAGAGCGGGTAGAA+AGG - chr1_1:8961667-8961686 Msa0006170:intron 45.0%
! AAAGGCAATAAGTGCTGTCC+CGG - chr1_1:8961685-8961704 Msa0006170:intron 45.0%
CCAAGATAGGAAACACATCC+GGG + chr1_1:8961706-8961725 None:intergenic 45.0%
CAGGTTTCAGGGAACTACAA+CGG - chr1_1:8961938-8961957 Msa0006170:CDS 45.0%
CGATGAAGTTCCGCAAATTG+GGG + chr1_1:8961987-8962006 None:intergenic 45.0%
GACGATGAAGTTCCGCAAAT+TGG + chr1_1:8961989-8962008 None:intergenic 45.0%
!! AGGAGGAGGAAAAGAGTGTT+CGG - chr1_1:8962033-8962052 Msa0006170:CDS 45.0%
GGCTATATCTTGAGGCAAGT+TGG + chr1_1:8962155-8962174 None:intergenic 45.0%
TCTGATGGGGCTATATCTTG+AGG + chr1_1:8962163-8962182 None:intergenic 45.0%
! GACCGTTGAGTCCACGTTTT+TGG + chr1_1:8960106-8960125 None:intergenic 50.0%
TGAGGTTTCCGACGTTGTTC+CGG + chr1_1:8960197-8960216 None:intergenic 50.0%
!!! TTGGTGTTTTGGTGGAACGG+TGG + chr1_1:8960236-8960255 None:intergenic 50.0%
TGGAGAGAGAGTTCCAGAGA+CGG + chr1_1:8960275-8960294 None:intergenic 50.0%
!! ATTCGTTGAAGGTGCTACGG+CGG + chr1_1:8960368-8960387 None:intergenic 50.0%
CTCCGATCTTCTGAACATGG+CGG - chr1_1:8960479-8960498 Msa0006170:CDS 50.0%
CTCCGCCATGTTCAGAAGAT+CGG + chr1_1:8960484-8960503 None:intergenic 50.0%
! TCTTCTGAACATGGCGGAGA+TGG - chr1_1:8960485-8960504 Msa0006170:CDS 50.0%
CTCCTTAGCGAGCATTCTCA+CGG + chr1_1:8960622-8960641 None:intergenic 50.0%
CCCGGATGTGTTTCCTATCT+TGG - chr1_1:8961703-8961722 Msa0006170:intron 50.0%
TGACAAGCAGGCCATGATAG+AGG - chr1_1:8961811-8961830 Msa0006170:CDS 50.0%
CACAATCCCTGCCTCTATCA+TGG + chr1_1:8961825-8961844 None:intergenic 50.0%
ACTGTCTCTGCCCCAATTTG+CGG - chr1_1:8961974-8961993 Msa0006170:CDS 50.0%
TCGTCGTGTGCAAAACCAGA+TGG - chr1_1:8962004-8962023 Msa0006170:CDS 50.0%
TCGTGTGCAAAACCAGATGG+AGG - chr1_1:8962007-8962026 Msa0006170:CDS 50.0%
TGTGCAAAACCAGATGGAGG+AGG - chr1_1:8962010-8962029 Msa0006170:CDS 50.0%
! GACCGTTGAGTCCACGTTTT+TGG + chr1_1:8960106-8960125 None:intergenic 50.0%
TGAGGTTTCCGACGTTGTTC+CGG + chr1_1:8960197-8960216 None:intergenic 50.0%
!!! TTGGTGTTTTGGTGGAACGG+TGG + chr1_1:8960236-8960255 None:intergenic 50.0%
TGGAGAGAGAGTTCCAGAGA+CGG + chr1_1:8960275-8960294 None:intergenic 50.0%
!! ATTCGTTGAAGGTGCTACGG+CGG + chr1_1:8960368-8960387 None:intergenic 50.0%
CTCCGATCTTCTGAACATGG+CGG - chr1_1:8960479-8960498 Msa0006170:CDS 50.0%
CTCCGCCATGTTCAGAAGAT+CGG + chr1_1:8960484-8960503 None:intergenic 50.0%
! TCTTCTGAACATGGCGGAGA+TGG - chr1_1:8960485-8960504 Msa0006170:CDS 50.0%
CTCCTTAGCGAGCATTCTCA+CGG + chr1_1:8960622-8960641 None:intergenic 50.0%
CCCGGATGTGTTTCCTATCT+TGG - chr1_1:8961703-8961722 Msa0006170:intron 50.0%
TGACAAGCAGGCCATGATAG+AGG - chr1_1:8961811-8961830 Msa0006170:CDS 50.0%
CACAATCCCTGCCTCTATCA+TGG + chr1_1:8961825-8961844 None:intergenic 50.0%
ACTGTCTCTGCCCCAATTTG+CGG - chr1_1:8961974-8961993 Msa0006170:CDS 50.0%
TCGTCGTGTGCAAAACCAGA+TGG - chr1_1:8962004-8962023 Msa0006170:CDS 50.0%
TCGTGTGCAAAACCAGATGG+AGG - chr1_1:8962007-8962026 Msa0006170:CDS 50.0%
TGTGCAAAACCAGATGGAGG+AGG - chr1_1:8962010-8962029 Msa0006170:CDS 50.0%
!! TTTTGGTGGAACGGTGGTGG+TGG + chr1_1:8960230-8960249 None:intergenic 55.0%
!!! GTGTTTTGGTGGAACGGTGG+TGG + chr1_1:8960233-8960252 None:intergenic 55.0%
! CGGAAGTGGTGGGAGAATGT+TGG + chr1_1:8960255-8960274 None:intergenic 55.0%
GTTCCAGAGACGGAAGTGGT+GGG + chr1_1:8960265-8960284 None:intergenic 55.0%
AGTTCCAGAGACGGAAGTGG+TGG + chr1_1:8960266-8960285 None:intergenic 55.0%
GAGAGTTCCAGAGACGGAAG+TGG + chr1_1:8960269-8960288 None:intergenic 55.0%
GTGGAAGATGAGACGACGGA+GGG + chr1_1:8960304-8960323 None:intergenic 55.0%
CCGTTTGTCGAAGGAGGAAG+CGG + chr1_1:8960415-8960434 None:intergenic 55.0%
CCGCTTCCTCCTTCGACAAA+CGG - chr1_1:8960412-8960431 Msa0006170:CDS 55.0%
! CTGTTGCCGTTTGTCGAAGG+AGG + chr1_1:8960421-8960440 None:intergenic 55.0%
CTTAGCGAGCATTCTCACGG+TGG + chr1_1:8960619-8960638 None:intergenic 55.0%
CACCGTGAGAATGCTCGCTA+AGG - chr1_1:8960617-8960636 Msa0006170:CDS 55.0%
! TCGAGCATTGCGACTAACGG+TGG + chr1_1:8960687-8960706 None:intergenic 55.0%
AAGCAGGCCATGATAGAGGC+AGG - chr1_1:8961815-8961834 Msa0006170:CDS 55.0%
AGCAGGCCATGATAGAGGCA+GGG - chr1_1:8961816-8961835 Msa0006170:CDS 55.0%
TGACTCAGAAACGGGCGTCA+AGG - chr1_1:8961882-8961901 Msa0006170:CDS 55.0%
GAAACGGGCGTCAAGGCTAT+TGG - chr1_1:8961889-8961908 Msa0006170:CDS 55.0%
GCAAAACCAGATGGAGGAGG+AGG - chr1_1:8962013-8962032 Msa0006170:CDS 55.0%
AAACCAGATGGAGGAGGAGG+AGG - chr1_1:8962016-8962035 Msa0006170:CDS 55.0%
!! TTTTGGTGGAACGGTGGTGG+TGG + chr1_1:8960230-8960249 None:intergenic 55.0%
!!! GTGTTTTGGTGGAACGGTGG+TGG + chr1_1:8960233-8960252 None:intergenic 55.0%
! CGGAAGTGGTGGGAGAATGT+TGG + chr1_1:8960255-8960274 None:intergenic 55.0%
GTTCCAGAGACGGAAGTGGT+GGG + chr1_1:8960265-8960284 None:intergenic 55.0%
AGTTCCAGAGACGGAAGTGG+TGG + chr1_1:8960266-8960285 None:intergenic 55.0%
GAGAGTTCCAGAGACGGAAG+TGG + chr1_1:8960269-8960288 None:intergenic 55.0%
GTGGAAGATGAGACGACGGA+GGG + chr1_1:8960304-8960323 None:intergenic 55.0%
CCGTTTGTCGAAGGAGGAAG+CGG + chr1_1:8960415-8960434 None:intergenic 55.0%
CCGCTTCCTCCTTCGACAAA+CGG - chr1_1:8960412-8960431 Msa0006170:CDS 55.0%
! CTGTTGCCGTTTGTCGAAGG+AGG + chr1_1:8960421-8960440 None:intergenic 55.0%
CTTAGCGAGCATTCTCACGG+TGG + chr1_1:8960619-8960638 None:intergenic 55.0%
CACCGTGAGAATGCTCGCTA+AGG - chr1_1:8960617-8960636 Msa0006170:CDS 55.0%
! TCGAGCATTGCGACTAACGG+TGG + chr1_1:8960687-8960706 None:intergenic 55.0%
AAGCAGGCCATGATAGAGGC+AGG - chr1_1:8961815-8961834 Msa0006170:CDS 55.0%
AGCAGGCCATGATAGAGGCA+GGG - chr1_1:8961816-8961835 Msa0006170:CDS 55.0%
TGACTCAGAAACGGGCGTCA+AGG - chr1_1:8961882-8961901 Msa0006170:CDS 55.0%
GAAACGGGCGTCAAGGCTAT+TGG - chr1_1:8961889-8961908 Msa0006170:CDS 55.0%
GCAAAACCAGATGGAGGAGG+AGG - chr1_1:8962013-8962032 Msa0006170:CDS 55.0%
AAACCAGATGGAGGAGGAGG+AGG - chr1_1:8962016-8962035 Msa0006170:CDS 55.0%
TCTCCCACCACTTCCGTCTC+TGG - chr1_1:8960259-8960278 Msa0006170:three_prime_UTR 60.0%
GAAGATGAGACGACGGAGGG+AGG + chr1_1:8960301-8960320 None:intergenic 60.0%
CGTGGAAGATGAGACGACGG+AGG + chr1_1:8960305-8960324 None:intergenic 60.0%
CGGCGTGGAAGATGAGACGA+CGG + chr1_1:8960308-8960327 None:intergenic 60.0%
ATCTTCCACGCCGTCAGCTG+CGG - chr1_1:8960315-8960334 Msa0006170:CDS 60.0%
TACGGCGGCGGTGGTTGTAA+CGG + chr1_1:8960353-8960372 None:intergenic 60.0%
GGCGGAGATGGAGACAGAAG+AGG - chr1_1:8960497-8960516 Msa0006170:CDS 60.0%
TCTCCCACCACTTCCGTCTC+TGG - chr1_1:8960259-8960278 Msa0006170:three_prime_UTR 60.0%
GAAGATGAGACGACGGAGGG+AGG + chr1_1:8960301-8960320 None:intergenic 60.0%
CGTGGAAGATGAGACGACGG+AGG + chr1_1:8960305-8960324 None:intergenic 60.0%
CGGCGTGGAAGATGAGACGA+CGG + chr1_1:8960308-8960327 None:intergenic 60.0%
ATCTTCCACGCCGTCAGCTG+CGG - chr1_1:8960315-8960334 Msa0006170:CDS 60.0%
TACGGCGGCGGTGGTTGTAA+CGG + chr1_1:8960353-8960372 None:intergenic 60.0%
GGCGGAGATGGAGACAGAAG+AGG - chr1_1:8960497-8960516 Msa0006170:CDS 60.0%
!! GGTGGTGGTGGCCGAGAATG+AGG + chr1_1:8960215-8960234 None:intergenic 65.0%
!! TGGTGGAACGGTGGTGGTGG+TGG + chr1_1:8960227-8960246 None:intergenic 65.0%
! GCGGTGGTTGTAACGGGAGG+TGG + chr1_1:8960346-8960365 None:intergenic 65.0%
ACGGCGGCGGTGGTTGTAAC+GGG + chr1_1:8960352-8960371 None:intergenic 65.0%
!! CGTTGAAGGTGCTACGGCGG+CGG + chr1_1:8960365-8960384 None:intergenic 65.0%
CCTCCTCCTCCTCCTCCATC+TGG + chr1_1:8962022-8962041 None:intergenic 65.0%
CCAGATGGAGGAGGAGGAGG+AGG - chr1_1:8962019-8962038 Msa0006170:CDS 65.0%
!! GGTGGTGGTGGCCGAGAATG+AGG + chr1_1:8960215-8960234 None:intergenic 65.0%
!! TGGTGGAACGGTGGTGGTGG+TGG + chr1_1:8960227-8960246 None:intergenic 65.0%
! GCGGTGGTTGTAACGGGAGG+TGG + chr1_1:8960346-8960365 None:intergenic 65.0%
ACGGCGGCGGTGGTTGTAAC+GGG + chr1_1:8960352-8960371 None:intergenic 65.0%
!! CGTTGAAGGTGCTACGGCGG+CGG + chr1_1:8960365-8960384 None:intergenic 65.0%
CCTCCTCCTCCTCCTCCATC+TGG + chr1_1:8962022-8962041 None:intergenic 65.0%
CCAGATGGAGGAGGAGGAGG+AGG - chr1_1:8962019-8962038 Msa0006170:CDS 65.0%
GAGACGACGGAGGGAGGCGA+TGG + chr1_1:8960295-8960314 None:intergenic 70.0%
TTCCACGCCGTCAGCTGCGG+TGG - chr1_1:8960318-8960337 Msa0006170:CDS 70.0%
! GCGGCGGTGGTTGTAACGGG+AGG + chr1_1:8960349-8960368 None:intergenic 70.0%
!! TGAAGGTGCTACGGCGGCGG+TGG + chr1_1:8960362-8960381 None:intergenic 70.0%
GAGACGACGGAGGGAGGCGA+TGG + chr1_1:8960295-8960314 None:intergenic 70.0%
TTCCACGCCGTCAGCTGCGG+TGG - chr1_1:8960318-8960337 Msa0006170:CDS 70.0%
! GCGGCGGTGGTTGTAACGGG+AGG + chr1_1:8960349-8960368 None:intergenic 70.0%
!! TGAAGGTGCTACGGCGGCGG+TGG + chr1_1:8960362-8960381 None:intergenic 70.0%
GGTGGCGCCACCGCAGCTGA+CGG + chr1_1:8960328-8960347 None:intergenic 75.0%
GGTGGCGCCACCGCAGCTGA+CGG + chr1_1:8960328-8960347 None:intergenic 75.0%
! CGCCACCGCAGCTGACGGCG+TGG + chr1_1:8960323-8960342 None:intergenic 80.0%
! CGCCACCGCAGCTGACGGCG+TGG + chr1_1:8960323-8960342 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 8960052 8962490 8960052 ID=Msa0006170;Name=Msa0006170
chr1_1 mRNA 8960052 8962490 8960052 ID=Msa0006170-mRNA-1;Parent=Msa0006170;Name=Msa0006170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=128|1|1|1|1|1|2|256|513
chr1_1 exon 8960052 8961253 8960052 ID=Msa0006170-mRNA-1:exon:3177;Parent=Msa0006170-mRNA-1
chr1_1 exon 8961767 8962490 8961767 ID=Msa0006170-mRNA-1:exon:3176;Parent=Msa0006170-mRNA-1
chr1_1 five_prime_UTR 8962363 8962490 8962363 ID=Msa0006170-mRNA-1:five_prime_utr;Parent=Msa0006170-mRNA-1
chr1_1 CDS 8961767 8962362 8961767 ID=Msa0006170-mRNA-1:cds;Parent=Msa0006170-mRNA-1
chr1_1 CDS 8960308 8961253 8960308 ID=Msa0006170-mRNA-1:cds;Parent=Msa0006170-mRNA-1
chr1_1 three_prime_UTR 8960052 8960307 8960052 ID=Msa0006170-mRNA-1:three_prime_utr;Parent=Msa0006170-mRNA-1
Gene Sequence

>Msa0006170

ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCATTCTCGGCCACCACCACCACCGTTCCACCAAAACACCAACATTCTCCCACCACTTCCGTCTCTGGAACTCTCTCTCCATCGCCTCCCTCCGTCGTCTCATCTTCCACGCCGTCAGCTGCGGTGGCGCCACCTCCCGTTACAACCACCGCCGCCGTAGCACCTTCAACGAATATGACACTGAAGACTTCTCTTCATCCGCTTCCTCCTTCGACAAACGGCAACAGAATCAAACTTCAAAACCGAATGTGAAATCGGAGAAACTCTCCGATCTTCTGAACATGGCGGAGATGGAGACAGAAGAGGAAGCGAAGAAGAAGGAAGAAGCTCTAGAGAAACTTAAGAAGCTTGTGAAGGATTTGCATGAGGAAGATGATTCGGTGAAGCGGCGTGAAGCTGCGACCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTAAGAGGAACACTTTCAATGCTCGGAGCGATTCCACCGTTAGTCGCAATGCTCGATTCAAAAGACGTTGATTCTCAGATCGCTTCTCTCTACGCATTGCTCAATCTTGGAATCGGAAACGATGCAAATAAAGAAGCCATTGTTAAAGTTGGTTCTGTTCACAAGATGCTTAAGCTTATTGAATCTTCAGATGGTATTGATTCGGCGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCAGCTGCAATACCCTTTTTAGTTAGAACTCTTCAGAATAAGAATTTAGATAAGAAAAGTAGCAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATCTTCCCGGCCAATATTCAGTTTATTTTGGAAACTGATTTGGTACCGTTTCTGATAAACTCGATTGGCGACATGGGAGTAACTGAAAGAAACCTTTCAATCCTTAGCAATTTGGTATCAACTAGAGCGGGTAGAAAGGCAATAAGTGCTGTCCCGGATGTGTTTCCTATCTTGGTCGATGTATTGAATTGGAATGATTCACCTGAATGTCAGGAAAAGGTTTCATATATTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATAGAGGCAGGGATTGTGTCTTCGCTTCTTGAGTTGTCGCTTATTGGTACAACTTTGACTCAGAAACGGGCGTCAAGGCTATTGGAAAGTTTGAGAATGGATAAAGGGAAACAGGTTTCAGGGAACTACAACGGAAATTTAGGTGCAACTGTCTCTGCCCCAATTTGCGGAACTTCATCGTCGTGTGCAAAACCAGATGGAGGAGGAGGAGGAGGAAAAGAGTGTTCGGAAGAAGATGAAGATATGATGAGCGAAGAGAAGAAAGCAGTGAAGCAATTAGTCCAATTGAGTTTGCAAAACAACATGAGGAAAATTGTGAAGAGGGCCAACTTGCCTCAAGATATAGCCCCATCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCAAAGAGTTTACCATTCTGA
Protein sequence

>Msa0006170

MANYHRNNVGNLILGHHHHRSTKTPTFSHHFRLWNSLSIASLRRLIFHAVSCGGATSRYNHRRRSTFNEYDTEDFSSSASSFDKRQQNQTSKPNVKSEKLSDLLNMAEMETEEEAKKKEEALEKLKKLVKDLHEEDDSVKRREAATTVRMLAKENLEVRGTLSMLGAIPPLVAMLDSKDVDSQIASLYALLNLGIGNDANKEAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQNKNLDKKSSNQVKQDALRALYNLSIFPANIQFILETDLVPFLINSIGDMGVTERNLSILSNLVSTRAGRKAISAVPDVFPILVDVLNWNDSPECQEKVSYILMVMSHKSYGDKQAMIEAGIVSSLLELSLIGTTLTQKRASRLLESLRMDKGKQVSGNYNGNLGATVSAPICGTSSSCAKPDGGGGGGKECSEEDEDMMSEEKKAVKQLVQLSLQNNMRKIVKRANLPQDIAPSDHFKSLTSSSTSKSLPF*