AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0006270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006270 MtrunA17_Chr1g0149821 97.135 384 11 0 1 384 1 384 0.0 772
Msa0006270 MtrunA17_Chr4g0065511 47.384 344 178 2 40 382 35 376 3.39e-109 325
Msa0006270 MtrunA17_Chr4g0065501 49.713 348 168 3 40 382 37 382 8.88e-107 319
Msa0006270 MtrunA17_Chr3g0140461 37.255 357 206 5 32 383 47 390 4.93e-68 220
Msa0006270 MtrunA17_Chr3g0140491 35.674 356 212 5 32 383 22 364 1.21e-65 213
Msa0006270 MtrunA17_Chr4g0065561 35.405 370 222 4 13 378 8 364 1.19e-61 211
Msa0006270 MtrunA17_Chr4g0065531 33.060 366 228 5 13 375 8 359 2.96e-56 189
Msa0006270 MtrunA17_Chr4g0065541 33.041 342 220 3 40 378 21 356 1.21e-51 184
Msa0006270 MtrunA17_Chr4g0065451 39.860 143 78 2 240 382 19 153 7.62e-26 102
Msa0006270 MtrunA17_Chr4g0065461 36.842 114 67 2 37 147 28 139 1.40e-16 75.9
Msa0006270 MtrunA17_Chr4g0066051 28.387 155 111 0 40 194 28 182 1.20e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0006270 AT4G19810.2 41.449 345 194 3 40 382 28 366 3.78e-88 271
Msa0006270 AT4G19810.1 41.449 345 194 3 40 382 28 366 3.78e-88 271
Msa0006270 AT4G19800.1 40.762 341 195 2 40 379 7 341 1.42e-83 260
Msa0006270 AT4G19820.1 37.971 345 206 3 40 382 26 364 8.09e-76 239
Msa0006270 AT4G19750.1 37.465 355 209 5 32 379 4 352 4.64e-72 229
Msa0006270 AT4G19760.1 37.772 368 206 7 32 382 4 365 7.41e-72 229
Msa0006270 AT4G19720.1 35.955 356 204 5 40 382 6 350 1.90e-67 218
Msa0006270 AT4G19730.1 36.923 325 185 6 40 350 14 332 5.44e-59 195
Msa0006270 AT4G19770.1 39.464 261 151 2 121 380 1 255 2.41e-56 186
Msa0006270 AT4G19740.1 38.265 196 112 4 143 336 23 211 1.18e-29 114

Find 110 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATAATAACACCAATTT+TGG 0.129479 1_1:-9134227 Msa0006270:CDS
TCCGAAATTAGTACCAATTT+TGG 0.140026 1_1:-9133503 Msa0006270:CDS
AACATGTCTTGTTGAGTTTC+AGG 0.150216 1_1:+9133782 None:intergenic
GTTTGAAAGGCTATTTCTTT+TGG 0.192066 1_1:-9133172 Msa0006270:CDS
ATCCACGTGGCAAGAAAATA+TGG 0.199050 1_1:-9133836 Msa0006270:CDS
AATTCTACAATAAGGCTTAT+TGG 0.208940 1_1:-9133659 Msa0006270:CDS
TCCAAAATTGGTACTAATTT+CGG 0.232381 1_1:+9133502 None:intergenic
ATTTCAAGTTTGAAGGAAAT+TGG 0.266881 1_1:+9134025 None:intergenic
CGGGGTGGGAGCGGAGGCGG+TGG 0.269593 1_1:-9133381 Msa0006270:CDS
GTTATGGGTTTGGCTTTATA+TGG 0.270864 1_1:-9133437 Msa0006270:CDS
AATCTAATTATGTACGCATT+AGG 0.274910 1_1:-9132388 Msa0006270:three_prime_UTR
TTTACTACAATTCTACAATA+AGG 0.300592 1_1:-9133667 Msa0006270:CDS
TGATTGGTGATGTTGGAAAT+TGG 0.302533 1_1:+9134352 None:intergenic
CAACGGGGTGGGAGCGGAGG+CGG 0.330744 1_1:-9133384 Msa0006270:CDS
ATCTAATTATGTACGCATTA+GGG 0.338139 1_1:-9132387 Msa0006270:three_prime_UTR
TTGATGGTGTTGACTTGGAT+TGG 0.339296 1_1:-9133811 Msa0006270:CDS
CCATGAGTGGAGTCCAAAAT+TGG 0.343332 1_1:+9133490 None:intergenic
GCTCCCACCCCGTTGACATT+TGG 0.345635 1_1:+9133392 None:intergenic
AAACTTTGTATCAATTATAA+AGG 0.353027 1_1:+9132506 None:intergenic
CGACCTGAAAAGTTGGTTAT+GGG 0.357426 1_1:-9133452 Msa0006270:CDS
TGAAAAGTTGGTTATGGGTT+TGG 0.358876 1_1:-9133447 Msa0006270:CDS
GGTTCGGTTCGCTAAGTCCT+TGG 0.378994 1_1:-9133195 Msa0006270:CDS
AGTTTGAAGGAAATTGGTTC+TGG 0.383577 1_1:+9134031 None:intergenic
TCGACCTGAAAAGTTGGTTA+TGG 0.384573 1_1:-9133453 Msa0006270:CDS
TGATGGTGTTGACTTGGATT+GGG 0.393541 1_1:-9133810 Msa0006270:CDS
TGTATCAATTATAAAGGTCT+AGG 0.402017 1_1:+9132512 None:intergenic
TGATGATACATTGAAGAAAA+TGG 0.402523 1_1:+9134192 None:intergenic
CTACCATCCGTGTCAGTTGC+AGG 0.408728 1_1:+9133356 None:intergenic
TGGCTTTATATGGACGGGCG+TGG 0.410489 1_1:-9133427 Msa0006270:CDS
TCACCGGCGGGGAACGGTGG+CGG 0.416311 1_1:+9133957 None:intergenic
CTATCAATAAGTACTTAGAT+TGG 0.421164 1_1:-9133604 Msa0006270:CDS
TTGGGCCCTTGGGAAGGATA+AGG 0.422516 1_1:-9133153 Msa0006270:CDS
AAACTTGAAATCACAAAATC+CGG 0.429982 1_1:-9134013 Msa0006270:CDS
ATTCTTATGCGGGTACTACT+TGG 0.429992 1_1:-9133253 Msa0006270:CDS
TGAAGGATCCAAATGTCAAC+GGG 0.437680 1_1:-9133400 Msa0006270:CDS
GTTCGGTTCGCTAAGTCCTT+GGG 0.446920 1_1:-9133194 Msa0006270:CDS
ACATGGTCCGAGATCGTATC+CGG 0.447523 1_1:-9133633 Msa0006270:CDS
GGCTTTATATGGACGGGCGT+GGG 0.454743 1_1:-9133426 Msa0006270:CDS
GGTACGTGGGATAATAATAC+TGG 0.460041 1_1:-9133554 Msa0006270:CDS
TATTGTAGAATTGTAGTAAA+CGG 0.462540 1_1:+9133670 None:intergenic
CGAACCTTAGCCGTTATTGA+AGG 0.463955 1_1:+9133212 None:intergenic
ACTCCACTCATGGATCAAAT+CGG 0.467968 1_1:-9133480 Msa0006270:CDS
AAATGTCAACGGGGTGGGAG+CGG 0.470085 1_1:-9133390 Msa0006270:CDS
TGGGTTTGGCTTTATATGGA+CGG 0.486221 1_1:-9133433 Msa0006270:CDS
CTTCAATAACGGCTAAGGTT+CGG 0.486769 1_1:-9133211 Msa0006270:CDS
TGTTTGCTGAAGCCAAGGTT+AGG 0.488465 1_1:-9133721 Msa0006270:CDS
TGTTTGCAGCTTCAAATGCA+TGG 0.493710 1_1:-9132572 Msa0006270:intron
GTTTGCAGCTTCAAATGCAT+GGG 0.495180 1_1:-9132571 Msa0006270:intron
TGGGTTTGATGGTGTTGACT+TGG 0.495194 1_1:-9133816 Msa0006270:CDS
TGCTTTGTTTGCTGAAGCCA+AGG 0.495351 1_1:-9133726 Msa0006270:CDS
TGTCAACGGGGTGGGAGCGG+AGG 0.495432 1_1:-9133387 Msa0006270:CDS
TATCAATAAGTACTTAGATT+GGG 0.495623 1_1:-9133603 Msa0006270:CDS
GGGTTTGGCTTTATATGGAC+GGG 0.497020 1_1:-9133432 Msa0006270:CDS
CTCCACTCATGGATCAAATC+GGG 0.499458 1_1:-9133479 Msa0006270:CDS
CAACAAGACATGTTTAACCT+TGG 0.500039 1_1:-9133773 Msa0006270:CDS
GCAAGAAAATATGGGTTTGA+TGG 0.503864 1_1:-9133827 Msa0006270:CDS
TTGGTTTGTTGTACGAGGAA+TGG 0.511153 1_1:-9133754 Msa0006270:CDS
TTGAAGTTTAATAAAGAGAG+TGG 0.514869 1_1:-9133314 Msa0006270:CDS
TATGCGGGTACTACTTGGAT+CGG 0.520264 1_1:-9133248 Msa0006270:CDS
GCTAAGTCCTTGGGTTTGAA+AGG 0.525269 1_1:-9133185 Msa0006270:CDS
TGGACGGGCGTGGGAGCTGA+AGG 0.529639 1_1:-9133417 Msa0006270:CDS
ATGGTGTTAGATCAGCATAT+TGG 0.535251 1_1:-9134129 Msa0006270:CDS
AGATCAGCATATTGGCCAGC+AGG 0.536947 1_1:-9134121 Msa0006270:CDS
TACTTATTGATAGCTTGAGC+CGG 0.537112 1_1:+9133614 None:intergenic
TCCACGTGGCAAGAAAATAT+GGG 0.538797 1_1:-9133835 Msa0006270:CDS
GCTTGAGCCGGATACGATCT+CGG 0.541555 1_1:+9133626 None:intergenic
TGCTAATGTTGTGTATGATA+AGG 0.544471 1_1:-9133291 Msa0006270:CDS
AATCCAATAATAAAAGTCAA+GGG 0.544652 1_1:+9134476 None:intergenic
ATGCGGGTACTACTTGGATC+GGG 0.546312 1_1:-9133247 Msa0006270:CDS
TGATGACGGGCCTTCAATAA+CGG 0.548821 1_1:-9133222 Msa0006270:CDS
GAATCCAATAATAAAAGTCA+AGG 0.549027 1_1:+9134475 None:intergenic
CTTGGATCGGGTATGATGAC+GGG 0.552269 1_1:-9133235 Msa0006270:CDS
ACTTGGATCGGGTATGATGA+CGG 0.552521 1_1:-9133236 Msa0006270:CDS
TCCAATCCTTATCCTTCCCA+AGG 0.552810 1_1:+9133147 None:intergenic
CTATGATGAGGGATAAGTGA+TGG 0.560785 1_1:+9134413 None:intergenic
CCCTTGGGAAGGATAAGGAT+TGG 0.562576 1_1:-9133148 Msa0006270:CDS
CGGGCCTTCAATAACGGCTA+AGG 0.563983 1_1:-9133216 Msa0006270:CDS
GATCCAAATGTCAACGGGGT+GGG 0.564298 1_1:-9133395 Msa0006270:CDS
GAAATAGCCTTTCAAACCCA+AGG 0.570698 1_1:+9133178 None:intergenic
GTTCTGGTTGAATGAAAGCA+AGG 0.575522 1_1:+9134047 None:intergenic
GGGGTGGGAGCGGAGGCGGT+GGG 0.578698 1_1:-9133380 Msa0006270:CDS
CTGAAGGATCCAAATGTCAA+CGG 0.582001 1_1:-9133401 Msa0006270:CDS
TAGTTTGTGTCAATCAAAGA+AGG 0.588638 1_1:+9134085 None:intergenic
GGGTGTTCGACCTGAAAAGT+TGG 0.591114 1_1:-9133459 Msa0006270:CDS
GTTTCGATTATCACGGTACG+TGG 0.604563 1_1:-9133568 Msa0006270:CDS
ACTCCGCCACCGTTCCCCGC+CGG 0.609308 1_1:-9133960 Msa0006270:CDS
CCAATCCTTATCCTTCCCAA+GGG 0.616123 1_1:+9133148 None:intergenic
TGAACGGTTCAACTATGATG+AGG 0.616718 1_1:+9134401 None:intergenic
TAACCTTGGTTTGTTGTACG+AGG 0.617085 1_1:-9133759 Msa0006270:CDS
GGTGGGACCTGCAACTGACA+CGG 0.621426 1_1:-9133363 Msa0006270:CDS
ATCCAATAATAAAAGTCAAG+GGG 0.621819 1_1:+9134477 None:intergenic
ATAAGGCTTATTGGTAAACA+TGG 0.622291 1_1:-9133650 Msa0006270:CDS
GCATATATATAGAGAACAAG+TGG 0.623772 1_1:+9134306 None:intergenic
CCAATGTGTTTCGATTATCA+CGG 0.625563 1_1:-9133575 Msa0006270:CDS
GGATCCAAATGTCAACGGGG+TGG 0.627972 1_1:-9133396 Msa0006270:CDS
GAACGGTTCAACTATGATGA+GGG 0.630645 1_1:+9134402 None:intergenic
AGAATTGTAGTAAACGGCAG+AGG 0.632126 1_1:+9133676 None:intergenic
TTTGCAGCTTCAAATGCATG+GGG 0.637832 1_1:-9132570 Msa0006270:intron
CACCCGATTTGATCCATGAG+TGG 0.643006 1_1:+9133477 None:intergenic
CCGTGATAATCGAAACACAT+TGG 0.644242 1_1:+9133575 None:intergenic
TTGAATTGTTGTGAATTGAA+CGG 0.648549 1_1:+9134385 None:intergenic
GATTGGACCATCTCAAAACA+AGG 0.657312 1_1:-9133131 Msa0006270:intron
GGACCTGCAACTGACACGGA+TGG 0.660097 1_1:-9133359 Msa0006270:CDS
ATATATATGATCATAAACCA+TGG 0.667935 1_1:-9134260 Msa0006270:exon
ATTCCTCGTACAACAAACCA+AGG 0.669048 1_1:+9133756 None:intergenic
TTTCGATTATCACGGTACGT+GGG 0.671850 1_1:-9133567 Msa0006270:CDS
AAGGGAACAAAAGTTGAACA+AGG 0.674562 1_1:+9134453 None:intergenic
GCAGAGGTCAAAAGTAAACG+TGG 0.725267 1_1:+9133692 None:intergenic
TATAAATTCAACAATCCACG+TGG 0.728895 1_1:-9133849 Msa0006270:CDS
GAAGGATCCAAATGTCAACG+GGG 0.809484 1_1:-9133399 Msa0006270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATAAATATATTAT+TGG - chr1_1:9133962-9133981 Msa0006270:CDS 0.0%
!!! TTTTTAAATAAATATATTAT+TGG - chr1_1:9133962-9133981 Msa0006270:CDS 0.0%
!!! TATTAGTTATTTTATGTGAT+TGG + chr1_1:9132527-9132546 None:intergenic 15.0%
!! CAATAAAATTGAAAAAGAAA+AGG + chr1_1:9133878-9133897 None:intergenic 15.0%
!! ATTTACAAAAATAATGTGTT+TGG - chr1_1:9133903-9133922 Msa0006270:CDS 15.0%
!! AAACTTTGTATCAATTATAA+AGG + chr1_1:9134357-9134376 None:intergenic 15.0%
!!! TACAAAGTTTTTTTTTTTGA+AGG - chr1_1:9134367-9134386 Msa0006270:five_prime_UTR 15.0%
!! AATACTATTCAAAAATATGA+TGG + chr1_1:9134432-9134451 None:intergenic 15.0%
!!! TATTAGTTATTTTATGTGAT+TGG + chr1_1:9132527-9132546 None:intergenic 15.0%
!! CAATAAAATTGAAAAAGAAA+AGG + chr1_1:9133878-9133897 None:intergenic 15.0%
!! ATTTACAAAAATAATGTGTT+TGG - chr1_1:9133903-9133922 Msa0006270:CDS 15.0%
!! AAACTTTGTATCAATTATAA+AGG + chr1_1:9134357-9134376 None:intergenic 15.0%
!!! TACAAAGTTTTTTTTTTTGA+AGG - chr1_1:9134367-9134386 Msa0006270:five_prime_UTR 15.0%
!! AATACTATTCAAAAATATGA+TGG + chr1_1:9134432-9134451 None:intergenic 15.0%
!! ATATATATGATCATAAACCA+TGG - chr1_1:9132600-9132619 Msa0006270:intron 20.0%
!!! TGTTATTATGATTTTTTGGA+CGG + chr1_1:9132626-9132645 None:intergenic 20.0%
!!! TTGGTGTTATTATGATTTTT+TGG + chr1_1:9132630-9132649 None:intergenic 20.0%
!!! AATCATAATAACACCAATTT+TGG - chr1_1:9132633-9132652 Msa0006270:intron 20.0%
!!! CAATACCAATTTTTAAATCA+TGG - chr1_1:9132712-9132731 Msa0006270:intron 20.0%
!! TAACACCATGATTTAAAAAT+TGG + chr1_1:9132720-9132739 None:intergenic 20.0%
!! TATTGTAGAATTGTAGTAAA+CGG + chr1_1:9133193-9133212 None:intergenic 20.0%
!! TTTACTACAATTCTACAATA+AGG - chr1_1:9133193-9133212 Msa0006270:CDS 20.0%
!! TATCAATAAGTACTTAGATT+GGG - chr1_1:9133257-9133276 Msa0006270:CDS 20.0%
!! TCTTTCTTACAATTAAACAT+TGG + chr1_1:9134136-9134155 None:intergenic 20.0%
!! ATATATATGATCATAAACCA+TGG - chr1_1:9132600-9132619 Msa0006270:intron 20.0%
!!! TGTTATTATGATTTTTTGGA+CGG + chr1_1:9132626-9132645 None:intergenic 20.0%
!!! TTGGTGTTATTATGATTTTT+TGG + chr1_1:9132630-9132649 None:intergenic 20.0%
!!! AATCATAATAACACCAATTT+TGG - chr1_1:9132633-9132652 Msa0006270:intron 20.0%
!!! CAATACCAATTTTTAAATCA+TGG - chr1_1:9132712-9132731 Msa0006270:intron 20.0%
!! TAACACCATGATTTAAAAAT+TGG + chr1_1:9132720-9132739 None:intergenic 20.0%
!! TATTGTAGAATTGTAGTAAA+CGG + chr1_1:9133193-9133212 None:intergenic 20.0%
!! TTTACTACAATTCTACAATA+AGG - chr1_1:9133193-9133212 Msa0006270:CDS 20.0%
!! TATCAATAAGTACTTAGATT+GGG - chr1_1:9133257-9133276 Msa0006270:CDS 20.0%
!! TCTTTCTTACAATTAAACAT+TGG + chr1_1:9134136-9134155 None:intergenic 20.0%
! TTGAATTGTTGTGAATTGAA+CGG + chr1_1:9132478-9132497 None:intergenic 25.0%
! TGATGATACATTGAAGAAAA+TGG + chr1_1:9132671-9132690 None:intergenic 25.0%
!!! ATTTCAAGTTTGAAGGAAAT+TGG + chr1_1:9132838-9132857 None:intergenic 25.0%
!!! TTTTGTGATTTCAAGTTTGA+AGG + chr1_1:9132845-9132864 None:intergenic 25.0%
! AAACTTGAAATCACAAAATC+CGG - chr1_1:9132847-9132866 Msa0006270:intron 25.0%
!!! ATTGATAAAAGTGTTTTCAC+CGG + chr1_1:9132922-9132941 None:intergenic 25.0%
!! GTGAAAACACTTTTATCAAT+TGG - chr1_1:9132922-9132941 Msa0006270:intron 25.0%
!! AAAACACTTTTATCAATTGG+AGG - chr1_1:9132925-9132944 Msa0006270:intron 25.0%
! AATTCTACAATAAGGCTTAT+TGG - chr1_1:9133201-9133220 Msa0006270:CDS 25.0%
! CTATCAATAAGTACTTAGAT+TGG - chr1_1:9133256-9133275 Msa0006270:CDS 25.0%
! TCCAAAATTGGTACTAATTT+CGG + chr1_1:9133361-9133380 None:intergenic 25.0%
! TTGAAGTTTAATAAAGAGAG+TGG - chr1_1:9133546-9133565 Msa0006270:CDS 25.0%
!! TGTGTCTTTTTATTCTTATG+CGG - chr1_1:9133596-9133615 Msa0006270:CDS 25.0%
!!! TTTGAAAGGCTATTTCTTTT+GGG - chr1_1:9133689-9133708 Msa0006270:CDS 25.0%
!!! CAATAAGCATCTTTTTTTAG+AGG + chr1_1:9134084-9134103 None:intergenic 25.0%
!! TCAAAAGCAATCTAAGTTTT+TGG - chr1_1:9134162-9134181 Msa0006270:CDS 25.0%
!!! GGTTCTAATTAAGATTTTGA+TGG - chr1_1:9134183-9134202 Msa0006270:CDS 25.0%
! ACAAATATAAGAAGACATCA+TGG + chr1_1:9134258-9134277 None:intergenic 25.0%
! TGTATCAATTATAAAGGTCT+AGG + chr1_1:9134351-9134370 None:intergenic 25.0%
! AATCTAATTATGTACGCATT+AGG - chr1_1:9134472-9134491 Msa0006270:five_prime_UTR 25.0%
! ATCTAATTATGTACGCATTA+GGG - chr1_1:9134473-9134492 Msa0006270:five_prime_UTR 25.0%
! GAATCCAATAATAAAAGTCA+AGG + chr1_1:9132388-9132407 None:intergenic 25.0%
! TTGAATTGTTGTGAATTGAA+CGG + chr1_1:9132478-9132497 None:intergenic 25.0%
! TGATGATACATTGAAGAAAA+TGG + chr1_1:9132671-9132690 None:intergenic 25.0%
!!! ATTTCAAGTTTGAAGGAAAT+TGG + chr1_1:9132838-9132857 None:intergenic 25.0%
!!! TTTTGTGATTTCAAGTTTGA+AGG + chr1_1:9132845-9132864 None:intergenic 25.0%
! AAACTTGAAATCACAAAATC+CGG - chr1_1:9132847-9132866 Msa0006270:intron 25.0%
!!! ATTGATAAAAGTGTTTTCAC+CGG + chr1_1:9132922-9132941 None:intergenic 25.0%
!! GTGAAAACACTTTTATCAAT+TGG - chr1_1:9132922-9132941 Msa0006270:intron 25.0%
!! AAAACACTTTTATCAATTGG+AGG - chr1_1:9132925-9132944 Msa0006270:intron 25.0%
! AATTCTACAATAAGGCTTAT+TGG - chr1_1:9133201-9133220 Msa0006270:CDS 25.0%
! CTATCAATAAGTACTTAGAT+TGG - chr1_1:9133256-9133275 Msa0006270:CDS 25.0%
! TCCAAAATTGGTACTAATTT+CGG + chr1_1:9133361-9133380 None:intergenic 25.0%
! TTGAAGTTTAATAAAGAGAG+TGG - chr1_1:9133546-9133565 Msa0006270:CDS 25.0%
!! TGTGTCTTTTTATTCTTATG+CGG - chr1_1:9133596-9133615 Msa0006270:CDS 25.0%
!!! TTTGAAAGGCTATTTCTTTT+GGG - chr1_1:9133689-9133708 Msa0006270:CDS 25.0%
!!! CAATAAGCATCTTTTTTTAG+AGG + chr1_1:9134084-9134103 None:intergenic 25.0%
!! TCAAAAGCAATCTAAGTTTT+TGG - chr1_1:9134162-9134181 Msa0006270:CDS 25.0%
!!! GGTTCTAATTAAGATTTTGA+TGG - chr1_1:9134183-9134202 Msa0006270:CDS 25.0%
! ACAAATATAAGAAGACATCA+TGG + chr1_1:9134258-9134277 None:intergenic 25.0%
! TGTATCAATTATAAAGGTCT+AGG + chr1_1:9134351-9134370 None:intergenic 25.0%
! AATCTAATTATGTACGCATT+AGG - chr1_1:9134472-9134491 Msa0006270:five_prime_UTR 25.0%
! ATCTAATTATGTACGCATTA+GGG - chr1_1:9134473-9134492 Msa0006270:five_prime_UTR 25.0%
GAGAGAAAAATCAAAGACAA+GGG + chr1_1:9132428-9132447 None:intergenic 30.0%
!!! TTTTATGTGATTGGTGATGT+TGG + chr1_1:9132518-9132537 None:intergenic 30.0%
GCATATATATAGAGAACAAG+TGG + chr1_1:9132557-9132576 None:intergenic 30.0%
GTCACTAGAAAAACCAAAAT+TGG + chr1_1:9132649-9132668 None:intergenic 30.0%
! TAGTTTGTGTCAATCAAAGA+AGG + chr1_1:9132778-9132797 None:intergenic 30.0%
TATAAATTCAACAATCCACG+TGG - chr1_1:9133011-9133030 Msa0006270:intron 30.0%
ATAAGGCTTATTGGTAAACA+TGG - chr1_1:9133210-9133229 Msa0006270:CDS 30.0%
! TCCGAAATTAGTACCAATTT+TGG - chr1_1:9133357-9133376 Msa0006270:CDS 30.0%
TGCTAATGTTGTGTATGATA+AGG - chr1_1:9133569-9133588 Msa0006270:CDS 30.0%
! GTGTCTTTTTATTCTTATGC+GGG - chr1_1:9133597-9133616 Msa0006270:CDS 30.0%
!!! GTTTGAAAGGCTATTTCTTT+TGG - chr1_1:9133688-9133707 Msa0006270:CDS 30.0%
TGAAAAACATGCAAGTCATT+TGG - chr1_1:9133932-9133951 Msa0006270:CDS 30.0%
! TGATGGTTTTCTTACAACTT+AGG - chr1_1:9134200-9134219 Msa0006270:CDS 30.0%
! GATGGTTTTCTTACAACTTA+GGG - chr1_1:9134201-9134220 Msa0006270:CDS 30.0%
TAAGAAGACATCATGGATAT+AGG + chr1_1:9134251-9134270 None:intergenic 30.0%
GAGAGAAAAATCAAAGACAA+GGG + chr1_1:9132428-9132447 None:intergenic 30.0%
!!! TTTTATGTGATTGGTGATGT+TGG + chr1_1:9132518-9132537 None:intergenic 30.0%
GCATATATATAGAGAACAAG+TGG + chr1_1:9132557-9132576 None:intergenic 30.0%
GTCACTAGAAAAACCAAAAT+TGG + chr1_1:9132649-9132668 None:intergenic 30.0%
! TAGTTTGTGTCAATCAAAGA+AGG + chr1_1:9132778-9132797 None:intergenic 30.0%
TATAAATTCAACAATCCACG+TGG - chr1_1:9133011-9133030 Msa0006270:intron 30.0%
ATAAGGCTTATTGGTAAACA+TGG - chr1_1:9133210-9133229 Msa0006270:CDS 30.0%
! TCCGAAATTAGTACCAATTT+TGG - chr1_1:9133357-9133376 Msa0006270:CDS 30.0%
TGCTAATGTTGTGTATGATA+AGG - chr1_1:9133569-9133588 Msa0006270:CDS 30.0%
! GTGTCTTTTTATTCTTATGC+GGG - chr1_1:9133597-9133616 Msa0006270:CDS 30.0%
!!! GTTTGAAAGGCTATTTCTTT+TGG - chr1_1:9133688-9133707 Msa0006270:CDS 30.0%
TGAAAAACATGCAAGTCATT+TGG - chr1_1:9133932-9133951 Msa0006270:CDS 30.0%
! TGATGGTTTTCTTACAACTT+AGG - chr1_1:9134200-9134219 Msa0006270:CDS 30.0%
! GATGGTTTTCTTACAACTTA+GGG - chr1_1:9134201-9134220 Msa0006270:CDS 30.0%
TAAGAAGACATCATGGATAT+AGG + chr1_1:9134251-9134270 None:intergenic 30.0%
AAGGGAACAAAAGTTGAACA+AGG + chr1_1:9132410-9132429 None:intergenic 35.0%
GGAGAGAAAAATCAAAGACA+AGG + chr1_1:9132429-9132448 None:intergenic 35.0%
!! TGATTGGTGATGTTGGAAAT+TGG + chr1_1:9132511-9132530 None:intergenic 35.0%
! ATGGTGTTAGATCAGCATAT+TGG - chr1_1:9132731-9132750 Msa0006270:intron 35.0%
! AGTTTGAAGGAAATTGGTTC+TGG + chr1_1:9132832-9132851 None:intergenic 35.0%
TCACAAAATCCGGCAAAAAA+TGG - chr1_1:9132857-9132876 Msa0006270:intron 35.0%
CACAAAATCCGGCAAAAAAT+GGG - chr1_1:9132858-9132877 Msa0006270:intron 35.0%
ACAAAATCCGGCAAAAAATG+GGG - chr1_1:9132859-9132878 Msa0006270:intron 35.0%
! ACACTTTTATCAATTGGAGG+TGG - chr1_1:9132928-9132947 Msa0006270:intron 35.0%
GCAAGAAAATATGGGTTTGA+TGG - chr1_1:9133033-9133052 Msa0006270:intron 35.0%
! AACATGTCTTGTTGAGTTTC+AGG + chr1_1:9133081-9133100 None:intergenic 35.0%
CAACAAGACATGTTTAACCT+TGG - chr1_1:9133087-9133106 Msa0006270:intron 35.0%
! TACTTATTGATAGCTTGAGC+CGG + chr1_1:9133249-9133268 None:intergenic 35.0%
CCAATGTGTTTCGATTATCA+CGG - chr1_1:9133285-9133304 Msa0006270:CDS 35.0%
! AAACCCATAACCAACTTTTC+AGG + chr1_1:9133414-9133433 None:intergenic 35.0%
! TGAAAAGTTGGTTATGGGTT+TGG - chr1_1:9133413-9133432 Msa0006270:CDS 35.0%
!! GTTATGGGTTTGGCTTTATA+TGG - chr1_1:9133423-9133442 Msa0006270:CDS 35.0%
!!! TGAAGTACCTTGTTTTGAGA+TGG + chr1_1:9133739-9133758 None:intergenic 35.0%
AAGGGAACAAAAGTTGAACA+AGG + chr1_1:9132410-9132429 None:intergenic 35.0%
GGAGAGAAAAATCAAAGACA+AGG + chr1_1:9132429-9132448 None:intergenic 35.0%
!! TGATTGGTGATGTTGGAAAT+TGG + chr1_1:9132511-9132530 None:intergenic 35.0%
! ATGGTGTTAGATCAGCATAT+TGG - chr1_1:9132731-9132750 Msa0006270:intron 35.0%
! AGTTTGAAGGAAATTGGTTC+TGG + chr1_1:9132832-9132851 None:intergenic 35.0%
TCACAAAATCCGGCAAAAAA+TGG - chr1_1:9132857-9132876 Msa0006270:intron 35.0%
CACAAAATCCGGCAAAAAAT+GGG - chr1_1:9132858-9132877 Msa0006270:intron 35.0%
ACAAAATCCGGCAAAAAATG+GGG - chr1_1:9132859-9132878 Msa0006270:intron 35.0%
! ACACTTTTATCAATTGGAGG+TGG - chr1_1:9132928-9132947 Msa0006270:intron 35.0%
GCAAGAAAATATGGGTTTGA+TGG - chr1_1:9133033-9133052 Msa0006270:intron 35.0%
! AACATGTCTTGTTGAGTTTC+AGG + chr1_1:9133081-9133100 None:intergenic 35.0%
CAACAAGACATGTTTAACCT+TGG - chr1_1:9133087-9133106 Msa0006270:intron 35.0%
! TACTTATTGATAGCTTGAGC+CGG + chr1_1:9133249-9133268 None:intergenic 35.0%
CCAATGTGTTTCGATTATCA+CGG - chr1_1:9133285-9133304 Msa0006270:CDS 35.0%
! AAACCCATAACCAACTTTTC+AGG + chr1_1:9133414-9133433 None:intergenic 35.0%
! TGAAAAGTTGGTTATGGGTT+TGG - chr1_1:9133413-9133432 Msa0006270:CDS 35.0%
!! GTTATGGGTTTGGCTTTATA+TGG - chr1_1:9133423-9133442 Msa0006270:CDS 35.0%
!!! TGAAGTACCTTGTTTTGAGA+TGG + chr1_1:9133739-9133758 None:intergenic 35.0%
CTATGATGAGGGATAAGTGA+TGG + chr1_1:9132450-9132469 None:intergenic 40.0%
GAACGGTTCAACTATGATGA+GGG + chr1_1:9132461-9132480 None:intergenic 40.0%
TGAACGGTTCAACTATGATG+AGG + chr1_1:9132462-9132481 None:intergenic 40.0%
!!! TATGATTTTTTGGACGGCCA+TGG + chr1_1:9132620-9132639 None:intergenic 40.0%
! GTTCTGGTTGAATGAAAGCA+AGG + chr1_1:9132816-9132835 None:intergenic 40.0%
!!! ATTCTGACCCCATTTTTTGC+CGG + chr1_1:9132869-9132888 None:intergenic 40.0%
!!! ATAAAAGTGTTTTCACCGGC+GGG + chr1_1:9132918-9132937 None:intergenic 40.0%
!!! GATAAAAGTGTTTTCACCGG+CGG + chr1_1:9132919-9132938 None:intergenic 40.0%
! CTTTTATCAATTGGAGGTGG+TGG - chr1_1:9132931-9132950 Msa0006270:intron 40.0%
ATCCACGTGGCAAGAAAATA+TGG - chr1_1:9133024-9133043 Msa0006270:intron 40.0%
TCCACGTGGCAAGAAAATAT+GGG - chr1_1:9133025-9133044 Msa0006270:intron 40.0%
!! TTGATGGTGTTGACTTGGAT+TGG - chr1_1:9133049-9133068 Msa0006270:intron 40.0%
!! TGATGGTGTTGACTTGGATT+GGG - chr1_1:9133050-9133069 Msa0006270:intron 40.0%
!! TAACCTTGGTTTGTTGTACG+AGG - chr1_1:9133101-9133120 Msa0006270:intron 40.0%
ATTCCTCGTACAACAAACCA+AGG + chr1_1:9133107-9133126 None:intergenic 40.0%
!! TTGGTTTGTTGTACGAGGAA+TGG - chr1_1:9133106-9133125 Msa0006270:intron 40.0%
AGAATTGTAGTAAACGGCAG+AGG + chr1_1:9133187-9133206 None:intergenic 40.0%
CCGTGATAATCGAAACACAT+TGG + chr1_1:9133288-9133307 None:intergenic 40.0%
TTTCGATTATCACGGTACGT+GGG - chr1_1:9133293-9133312 Msa0006270:CDS 40.0%
GGTACGTGGGATAATAATAC+TGG - chr1_1:9133306-9133325 Msa0006270:CDS 40.0%
ACTCCACTCATGGATCAAAT+CGG - chr1_1:9133380-9133399 Msa0006270:CDS 40.0%
! TCGACCTGAAAAGTTGGTTA+TGG - chr1_1:9133407-9133426 Msa0006270:CDS 40.0%
! CGACCTGAAAAGTTGGTTAT+GGG - chr1_1:9133408-9133427 Msa0006270:CDS 40.0%
!! TGGGTTTGGCTTTATATGGA+CGG - chr1_1:9133427-9133446 Msa0006270:CDS 40.0%
CTGAAGGATCCAAATGTCAA+CGG - chr1_1:9133459-9133478 Msa0006270:CDS 40.0%
TGAAGGATCCAAATGTCAAC+GGG - chr1_1:9133460-9133479 Msa0006270:CDS 40.0%
ATTCTTATGCGGGTACTACT+TGG - chr1_1:9133607-9133626 Msa0006270:CDS 40.0%
CTTCAATAACGGCTAAGGTT+CGG - chr1_1:9133649-9133668 Msa0006270:CDS 40.0%
GAAATAGCCTTTCAAACCCA+AGG + chr1_1:9133685-9133704 None:intergenic 40.0%
GATTGGACCATCTCAAAACA+AGG - chr1_1:9133729-9133748 Msa0006270:CDS 40.0%
TGTTTGCAGCTTCAAATGCA+TGG - chr1_1:9134288-9134307 Msa0006270:five_prime_UTR 40.0%
GTTTGCAGCTTCAAATGCAT+GGG - chr1_1:9134289-9134308 Msa0006270:five_prime_UTR 40.0%
TTTGCAGCTTCAAATGCATG+GGG - chr1_1:9134290-9134309 Msa0006270:five_prime_UTR 40.0%
CTATGATGAGGGATAAGTGA+TGG + chr1_1:9132450-9132469 None:intergenic 40.0%
GAACGGTTCAACTATGATGA+GGG + chr1_1:9132461-9132480 None:intergenic 40.0%
TGAACGGTTCAACTATGATG+AGG + chr1_1:9132462-9132481 None:intergenic 40.0%
!!! TATGATTTTTTGGACGGCCA+TGG + chr1_1:9132620-9132639 None:intergenic 40.0%
! GTTCTGGTTGAATGAAAGCA+AGG + chr1_1:9132816-9132835 None:intergenic 40.0%
!!! ATTCTGACCCCATTTTTTGC+CGG + chr1_1:9132869-9132888 None:intergenic 40.0%
!!! ATAAAAGTGTTTTCACCGGC+GGG + chr1_1:9132918-9132937 None:intergenic 40.0%
!!! GATAAAAGTGTTTTCACCGG+CGG + chr1_1:9132919-9132938 None:intergenic 40.0%
! CTTTTATCAATTGGAGGTGG+TGG - chr1_1:9132931-9132950 Msa0006270:intron 40.0%
ATCCACGTGGCAAGAAAATA+TGG - chr1_1:9133024-9133043 Msa0006270:intron 40.0%
TCCACGTGGCAAGAAAATAT+GGG - chr1_1:9133025-9133044 Msa0006270:intron 40.0%
!! TTGATGGTGTTGACTTGGAT+TGG - chr1_1:9133049-9133068 Msa0006270:intron 40.0%
!! TGATGGTGTTGACTTGGATT+GGG - chr1_1:9133050-9133069 Msa0006270:intron 40.0%
!! TAACCTTGGTTTGTTGTACG+AGG - chr1_1:9133101-9133120 Msa0006270:intron 40.0%
ATTCCTCGTACAACAAACCA+AGG + chr1_1:9133107-9133126 None:intergenic 40.0%
!! TTGGTTTGTTGTACGAGGAA+TGG - chr1_1:9133106-9133125 Msa0006270:intron 40.0%
AGAATTGTAGTAAACGGCAG+AGG + chr1_1:9133187-9133206 None:intergenic 40.0%
CCGTGATAATCGAAACACAT+TGG + chr1_1:9133288-9133307 None:intergenic 40.0%
TTTCGATTATCACGGTACGT+GGG - chr1_1:9133293-9133312 Msa0006270:CDS 40.0%
GGTACGTGGGATAATAATAC+TGG - chr1_1:9133306-9133325 Msa0006270:CDS 40.0%
ACTCCACTCATGGATCAAAT+CGG - chr1_1:9133380-9133399 Msa0006270:CDS 40.0%
! TCGACCTGAAAAGTTGGTTA+TGG - chr1_1:9133407-9133426 Msa0006270:CDS 40.0%
! CGACCTGAAAAGTTGGTTAT+GGG - chr1_1:9133408-9133427 Msa0006270:CDS 40.0%
!! TGGGTTTGGCTTTATATGGA+CGG - chr1_1:9133427-9133446 Msa0006270:CDS 40.0%
CTGAAGGATCCAAATGTCAA+CGG - chr1_1:9133459-9133478 Msa0006270:CDS 40.0%
TGAAGGATCCAAATGTCAAC+GGG - chr1_1:9133460-9133479 Msa0006270:CDS 40.0%
ATTCTTATGCGGGTACTACT+TGG - chr1_1:9133607-9133626 Msa0006270:CDS 40.0%
CTTCAATAACGGCTAAGGTT+CGG - chr1_1:9133649-9133668 Msa0006270:CDS 40.0%
GAAATAGCCTTTCAAACCCA+AGG + chr1_1:9133685-9133704 None:intergenic 40.0%
GATTGGACCATCTCAAAACA+AGG - chr1_1:9133729-9133748 Msa0006270:CDS 40.0%
TGTTTGCAGCTTCAAATGCA+TGG - chr1_1:9134288-9134307 Msa0006270:five_prime_UTR 40.0%
GTTTGCAGCTTCAAATGCAT+GGG - chr1_1:9134289-9134308 Msa0006270:five_prime_UTR 40.0%
TTTGCAGCTTCAAATGCATG+GGG - chr1_1:9134290-9134309 Msa0006270:five_prime_UTR 40.0%
!!! TAAAAGTGTTTTCACCGGCG+GGG + chr1_1:9132917-9132936 None:intergenic 45.0%
! ACCCATATTTTCTTGCCACG+TGG + chr1_1:9133029-9133048 None:intergenic 45.0%
!! TGGGTTTGATGGTGTTGACT+TGG - chr1_1:9133044-9133063 Msa0006270:intron 45.0%
!! TGCTTTGTTTGCTGAAGCCA+AGG - chr1_1:9133134-9133153 Msa0006270:CDS 45.0%
! TGTTTGCTGAAGCCAAGGTT+AGG - chr1_1:9133139-9133158 Msa0006270:CDS 45.0%
! ACGTGGTTTTCTCCTAACCT+TGG + chr1_1:9133154-9133173 None:intergenic 45.0%
GCAGAGGTCAAAAGTAAACG+TGG + chr1_1:9133171-9133190 None:intergenic 45.0%
GTTTCGATTATCACGGTACG+TGG - chr1_1:9133292-9133311 Msa0006270:CDS 45.0%
CCATGAGTGGAGTCCAAAAT+TGG + chr1_1:9133373-9133392 None:intergenic 45.0%
! CCAATTTTGGACTCCACTCA+TGG - chr1_1:9133370-9133389 Msa0006270:CDS 45.0%
CTCCACTCATGGATCAAATC+GGG - chr1_1:9133381-9133400 Msa0006270:CDS 45.0%
!! GGGTTTGGCTTTATATGGAC+GGG - chr1_1:9133428-9133447 Msa0006270:CDS 45.0%
GAAGGATCCAAATGTCAACG+GGG - chr1_1:9133461-9133480 Msa0006270:CDS 45.0%
TATGCGGGTACTACTTGGAT+CGG - chr1_1:9133612-9133631 Msa0006270:CDS 45.0%
ACTTGGATCGGGTATGATGA+CGG - chr1_1:9133624-9133643 Msa0006270:CDS 45.0%
!! TGATGACGGGCCTTCAATAA+CGG - chr1_1:9133638-9133657 Msa0006270:CDS 45.0%
CGAACCTTAGCCGTTATTGA+AGG + chr1_1:9133651-9133670 None:intergenic 45.0%
GCTAAGTCCTTGGGTTTGAA+AGG - chr1_1:9133675-9133694 Msa0006270:CDS 45.0%
!!! GCTATTTCTTTTGGGCCCTT+GGG - chr1_1:9133697-9133716 Msa0006270:CDS 45.0%
CCAATCCTTATCCTTCCCAA+GGG + chr1_1:9133715-9133734 None:intergenic 45.0%
TCCAATCCTTATCCTTCCCA+AGG + chr1_1:9133716-9133735 None:intergenic 45.0%
TCTTACAACTTAGGGTAGCG+TGG - chr1_1:9134209-9134228 Msa0006270:CDS 45.0%
!!! TAAAAGTGTTTTCACCGGCG+GGG + chr1_1:9132917-9132936 None:intergenic 45.0%
! ACCCATATTTTCTTGCCACG+TGG + chr1_1:9133029-9133048 None:intergenic 45.0%
!! TGGGTTTGATGGTGTTGACT+TGG - chr1_1:9133044-9133063 Msa0006270:intron 45.0%
!! TGCTTTGTTTGCTGAAGCCA+AGG - chr1_1:9133134-9133153 Msa0006270:CDS 45.0%
! TGTTTGCTGAAGCCAAGGTT+AGG - chr1_1:9133139-9133158 Msa0006270:CDS 45.0%
! ACGTGGTTTTCTCCTAACCT+TGG + chr1_1:9133154-9133173 None:intergenic 45.0%
GCAGAGGTCAAAAGTAAACG+TGG + chr1_1:9133171-9133190 None:intergenic 45.0%
GTTTCGATTATCACGGTACG+TGG - chr1_1:9133292-9133311 Msa0006270:CDS 45.0%
CCATGAGTGGAGTCCAAAAT+TGG + chr1_1:9133373-9133392 None:intergenic 45.0%
! CCAATTTTGGACTCCACTCA+TGG - chr1_1:9133370-9133389 Msa0006270:CDS 45.0%
CTCCACTCATGGATCAAATC+GGG - chr1_1:9133381-9133400 Msa0006270:CDS 45.0%
!! GGGTTTGGCTTTATATGGAC+GGG - chr1_1:9133428-9133447 Msa0006270:CDS 45.0%
GAAGGATCCAAATGTCAACG+GGG - chr1_1:9133461-9133480 Msa0006270:CDS 45.0%
TATGCGGGTACTACTTGGAT+CGG - chr1_1:9133612-9133631 Msa0006270:CDS 45.0%
ACTTGGATCGGGTATGATGA+CGG - chr1_1:9133624-9133643 Msa0006270:CDS 45.0%
!! TGATGACGGGCCTTCAATAA+CGG - chr1_1:9133638-9133657 Msa0006270:CDS 45.0%
CGAACCTTAGCCGTTATTGA+AGG + chr1_1:9133651-9133670 None:intergenic 45.0%
GCTAAGTCCTTGGGTTTGAA+AGG - chr1_1:9133675-9133694 Msa0006270:CDS 45.0%
!!! GCTATTTCTTTTGGGCCCTT+GGG - chr1_1:9133697-9133716 Msa0006270:CDS 45.0%
CCAATCCTTATCCTTCCCAA+GGG + chr1_1:9133715-9133734 None:intergenic 45.0%
TCCAATCCTTATCCTTCCCA+AGG + chr1_1:9133716-9133735 None:intergenic 45.0%
TCTTACAACTTAGGGTAGCG+TGG - chr1_1:9134209-9134228 Msa0006270:CDS 45.0%
!!! AAAAAATGTATTTATATTTT+TGG + chr1_1:9133800-9133819 None:intergenic 5.0%
!!! AAAAAATGTATTTATATTTT+TGG + chr1_1:9133800-9133819 None:intergenic 5.0%
AGATCAGCATATTGGCCAGC+AGG - chr1_1:9132739-9132758 Msa0006270:intron 50.0%
GGTGAAAAATCATCGCCTGC+TGG + chr1_1:9132757-9132776 None:intergenic 50.0%
ACATGGTCCGAGATCGTATC+CGG - chr1_1:9133227-9133246 Msa0006270:CDS 50.0%
! CACCCGATTTGATCCATGAG+TGG + chr1_1:9133386-9133405 None:intergenic 50.0%
GGGTGTTCGACCTGAAAAGT+TGG - chr1_1:9133401-9133420 Msa0006270:CDS 50.0%
GATCCAAATGTCAACGGGGT+GGG - chr1_1:9133465-9133484 Msa0006270:CDS 50.0%
ATGCGGGTACTACTTGGATC+GGG - chr1_1:9133613-9133632 Msa0006270:CDS 50.0%
CTTGGATCGGGTATGATGAC+GGG - chr1_1:9133625-9133644 Msa0006270:CDS 50.0%
! GTTCGGTTCGCTAAGTCCTT+GGG - chr1_1:9133666-9133685 Msa0006270:CDS 50.0%
!!! GGCTATTTCTTTTGGGCCCT+TGG - chr1_1:9133696-9133715 Msa0006270:CDS 50.0%
! TTTCTTTTGGGCCCTTGGGA+AGG - chr1_1:9133701-9133720 Msa0006270:CDS 50.0%
CCCTTGGGAAGGATAAGGAT+TGG - chr1_1:9133712-9133731 Msa0006270:CDS 50.0%
AGATCAGCATATTGGCCAGC+AGG - chr1_1:9132739-9132758 Msa0006270:intron 50.0%
GGTGAAAAATCATCGCCTGC+TGG + chr1_1:9132757-9132776 None:intergenic 50.0%
ACATGGTCCGAGATCGTATC+CGG - chr1_1:9133227-9133246 Msa0006270:CDS 50.0%
! CACCCGATTTGATCCATGAG+TGG + chr1_1:9133386-9133405 None:intergenic 50.0%
GGGTGTTCGACCTGAAAAGT+TGG - chr1_1:9133401-9133420 Msa0006270:CDS 50.0%
GATCCAAATGTCAACGGGGT+GGG - chr1_1:9133465-9133484 Msa0006270:CDS 50.0%
ATGCGGGTACTACTTGGATC+GGG - chr1_1:9133613-9133632 Msa0006270:CDS 50.0%
CTTGGATCGGGTATGATGAC+GGG - chr1_1:9133625-9133644 Msa0006270:CDS 50.0%
! GTTCGGTTCGCTAAGTCCTT+GGG - chr1_1:9133666-9133685 Msa0006270:CDS 50.0%
!!! GGCTATTTCTTTTGGGCCCT+TGG - chr1_1:9133696-9133715 Msa0006270:CDS 50.0%
! TTTCTTTTGGGCCCTTGGGA+AGG - chr1_1:9133701-9133720 Msa0006270:CDS 50.0%
CCCTTGGGAAGGATAAGGAT+TGG - chr1_1:9133712-9133731 Msa0006270:CDS 50.0%
GCTTGAGCCGGATACGATCT+CGG + chr1_1:9133237-9133256 None:intergenic 55.0%
!! TGGCTTTATATGGACGGGCG+TGG - chr1_1:9133433-9133452 Msa0006270:CDS 55.0%
! GGCTTTATATGGACGGGCGT+GGG - chr1_1:9133434-9133453 Msa0006270:CDS 55.0%
GGATCCAAATGTCAACGGGG+TGG - chr1_1:9133464-9133483 Msa0006270:CDS 55.0%
AAATGTCAACGGGGTGGGAG+CGG - chr1_1:9133470-9133489 Msa0006270:CDS 55.0%
CTACCATCCGTGTCAGTTGC+AGG + chr1_1:9133507-9133526 None:intergenic 55.0%
CGGGCCTTCAATAACGGCTA+AGG - chr1_1:9133644-9133663 Msa0006270:CDS 55.0%
! GGTTCGGTTCGCTAAGTCCT+TGG - chr1_1:9133665-9133684 Msa0006270:CDS 55.0%
TTGGGCCCTTGGGAAGGATA+AGG - chr1_1:9133707-9133726 Msa0006270:CDS 55.0%
GCTTGAGCCGGATACGATCT+CGG + chr1_1:9133237-9133256 None:intergenic 55.0%
!! TGGCTTTATATGGACGGGCG+TGG - chr1_1:9133433-9133452 Msa0006270:CDS 55.0%
! GGCTTTATATGGACGGGCGT+GGG - chr1_1:9133434-9133453 Msa0006270:CDS 55.0%
GGATCCAAATGTCAACGGGG+TGG - chr1_1:9133464-9133483 Msa0006270:CDS 55.0%
AAATGTCAACGGGGTGGGAG+CGG - chr1_1:9133470-9133489 Msa0006270:CDS 55.0%
CTACCATCCGTGTCAGTTGC+AGG + chr1_1:9133507-9133526 None:intergenic 55.0%
CGGGCCTTCAATAACGGCTA+AGG - chr1_1:9133644-9133663 Msa0006270:CDS 55.0%
! GGTTCGGTTCGCTAAGTCCT+TGG - chr1_1:9133665-9133684 Msa0006270:CDS 55.0%
TTGGGCCCTTGGGAAGGATA+AGG - chr1_1:9133707-9133726 Msa0006270:CDS 55.0%
! GTGTTTTCACCGGCGGGGAA+CGG + chr1_1:9132912-9132931 None:intergenic 60.0%
GCTCCCACCCCGTTGACATT+TGG + chr1_1:9133471-9133490 None:intergenic 60.0%
GGTGGGACCTGCAACTGACA+CGG - chr1_1:9133497-9133516 Msa0006270:CDS 60.0%
GGACCTGCAACTGACACGGA+TGG - chr1_1:9133501-9133520 Msa0006270:CDS 60.0%
! GTGTTTTCACCGGCGGGGAA+CGG + chr1_1:9132912-9132931 None:intergenic 60.0%
GCTCCCACCCCGTTGACATT+TGG + chr1_1:9133471-9133490 None:intergenic 60.0%
GGTGGGACCTGCAACTGACA+CGG - chr1_1:9133497-9133516 Msa0006270:CDS 60.0%
GGACCTGCAACTGACACGGA+TGG - chr1_1:9133501-9133520 Msa0006270:CDS 60.0%
! TTTTCACCGGCGGGGAACGG+TGG + chr1_1:9132909-9132928 None:intergenic 65.0%
! TTTTCACCGGCGGGGAACGG+TGG + chr1_1:9132909-9132928 None:intergenic 65.0%
TGGACGGGCGTGGGAGCTGA+AGG - chr1_1:9133443-9133462 Msa0006270:CDS 70.0%
TGTCAACGGGGTGGGAGCGG+AGG - chr1_1:9133473-9133492 Msa0006270:CDS 70.0%
TGGACGGGCGTGGGAGCTGA+AGG - chr1_1:9133443-9133462 Msa0006270:CDS 70.0%
TGTCAACGGGGTGGGAGCGG+AGG - chr1_1:9133473-9133492 Msa0006270:CDS 70.0%
ACTCCGCCACCGTTCCCCGC+CGG - chr1_1:9132900-9132919 Msa0006270:intron 75.0%
TCACCGGCGGGGAACGGTGG+CGG + chr1_1:9132906-9132925 None:intergenic 75.0%
CAACGGGGTGGGAGCGGAGG+CGG - chr1_1:9133476-9133495 Msa0006270:CDS 75.0%
ACTCCGCCACCGTTCCCCGC+CGG - chr1_1:9132900-9132919 Msa0006270:intron 75.0%
TCACCGGCGGGGAACGGTGG+CGG + chr1_1:9132906-9132925 None:intergenic 75.0%
CAACGGGGTGGGAGCGGAGG+CGG - chr1_1:9133476-9133495 Msa0006270:CDS 75.0%
! GGGGTGGGAGCGGAGGCGGT+GGG - chr1_1:9133480-9133499 Msa0006270:CDS 80.0%
! GGGGTGGGAGCGGAGGCGGT+GGG - chr1_1:9133480-9133499 Msa0006270:CDS 80.0%
! CGGGGTGGGAGCGGAGGCGG+TGG - chr1_1:9133479-9133498 Msa0006270:CDS 85.0%
! CGGGGTGGGAGCGGAGGCGG+TGG - chr1_1:9133479-9133498 Msa0006270:CDS 85.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 9132386 9134496 9132386 ID=Msa0006270;Name=Msa0006270
chr1_1 mRNA 9132386 9134496 9132386 ID=Msa0006270-mRNA-1;Parent=Msa0006270;Name=Msa0006270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|1|1|2|177|384
chr1_1 exon 9132386 9132585 9132386 ID=Msa0006270-mRNA-1:exon:3237;Parent=Msa0006270-mRNA-1
chr1_1 exon 9133132 9134496 9133132 ID=Msa0006270-mRNA-1:exon:3236;Parent=Msa0006270-mRNA-1
chr1_1 five_prime_UTR 9134264 9134496 9134264 ID=Msa0006270-mRNA-1:five_prime_utr;Parent=Msa0006270-mRNA-1
chr1_1 CDS 9133132 9134263 9133132 ID=Msa0006270-mRNA-1:cds;Parent=Msa0006270-mRNA-1
chr1_1 CDS 9132563 9132585 9132563 ID=Msa0006270-mRNA-1:cds;Parent=Msa0006270-mRNA-1
chr1_1 three_prime_UTR 9132386 9132562 9132386 ID=Msa0006270-mRNA-1:three_prime_utr;Parent=Msa0006270-mRNA-1
Gene Sequence

>Msa0006270

ATGGCCGTCCAAAAAATCATAATAACACCAATTTTGGTTTTTCTAGTGACCATTTTCTTCAATGTATCATCATCATCATCTTCTAATAATTCGCAATACCAATTTTTAAATCATGGTGTTAGATCAGCATATTGGCCAGCAGGCGATGATTTTTCACCTTCTTTGATTGACACAAACTACTTCACTCACATTTTCCTTGCTTTCATTCAACCAGAACCAATTTCCTTCAAACTTGAAATCACAAAATCCGGCAAAAAATGGGGTCAGAATTTCATCAAAGCACTCCGCCACCGTTCCCCGCCGGTGAAAACACTTTTATCAATTGGAGGTGGTGGTAGCAATTCAACACTCTTCTCTGAAATTGCTAGCACAAAACAAAATAGAGAAATCTTTATAAATTCAACAATCCACGTGGCAAGAAAATATGGGTTTGATGGTGTTGACTTGGATTGGGAGTTTCCTGAAACTCAACAAGACATGTTTAACCTTGGTTTGTTGTACGAGGAATGGTATAATGCTTTGTTTGCTGAAGCCAAGGTTAGGAGAAAACCACGTTTACTTTTGACCTCTGCCGTTTACTACAATTCTACAATAAGGCTTATTGGTAAACATGGTCCGAGATCGTATCCGGCTCAAGCTATCAATAAGTACTTAGATTGGGCGAGTCCAATGTGTTTCGATTATCACGGTACGTGGGATAATAATACTGGCTTTAATGCTGCTTTGTATGACTCGAAGTCCGAAATTAGTACCAATTTTGGACTCCACTCATGGATCAAATCGGGTGTTCGACCTGAAAAGTTGGTTATGGGTTTGGCTTTATATGGACGGGCGTGGGAGCTGAAGGATCCAAATGTCAACGGGGTGGGAGCGGAGGCGGTGGGACCTGCAACTGACACGGATGGTAGTATGAATTATAATGAGATTTTGAAGTTTAATAAAGAGAGTGGTGCTAATGTTGTGTATGATAAGGTTGCTGTGTCTTTTTATTCTTATGCGGGTACTACTTGGATCGGGTATGATGACGGGCCTTCAATAACGGCTAAGGTTCGGTTCGCTAAGTCCTTGGGTTTGAAAGGCTATTTCTTTTGGGCCCTTGGGAAGGATAAGGATTGGACCATCTCAAAACAAGCTTCAAATGCATGGGGACACTGA
Protein sequence

>Msa0006270

MAVQKIIITPILVFLVTIFFNVSSSSSSNNSQYQFLNHGVRSAYWPAGDDFSPSLIDTNYFTHIFLAFIQPEPISFKLEITKSGKKWGQNFIKALRHRSPPVKTLLSIGGGGSNSTLFSEIASTKQNREIFINSTIHVARKYGFDGVDLDWEFPETQQDMFNLGLLYEEWYNALFAEAKVRRKPRLLLTSAVYYNSTIRLIGKHGPRSYPAQAINKYLDWASPMCFDYHGTWDNNTGFNAALYDSKSEISTNFGLHSWIKSGVRPEKLVMGLALYGRAWELKDPNVNGVGAEAVGPATDTDGSMNYNEILKFNKESGANVVYDKVAVSFYSYAGTTWIGYDDGPSITAKVRFAKSLGLKGYFFWALGKDKDWTISKQASNAWGH*