Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337000 | AGX84978.1 | 97.143 | 385 | 10 | 1 | 1 | 385 | 1 | 384 | 0.0 | 769 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337000 | sp|A0A072VEP0|CHT5A_MEDTR | 96.364 | 385 | 13 | 1 | 1 | 385 | 1 | 384 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337000 | A0A2K3NGX0 | 87.297 | 370 | 45 | 2 | 16 | 385 | 1 | 368 | 0.0 | 640 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006270 | Msa1337000 | 0.808522 | 2.971479e-50 | -8.615850e-47 |
| Msa0100280 | Msa1337000 | 0.863548 | 2.301488e-64 | -8.615850e-47 |
| Msa0144520 | Msa1337000 | 0.939176 | 1.973012e-99 | -8.615850e-47 |
| Msa1337000 | Msa1359410 | 0.818044 | 2.407246e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337000 | MtrunA17_Chr1g0149821 | 96.364 | 385 | 13 | 1 | 1 | 385 | 1 | 384 | 0.0 | 763 |
| Msa1337000 | MtrunA17_Chr4g0065511 | 47.384 | 344 | 178 | 2 | 41 | 383 | 35 | 376 | 5.85e-110 | 327 |
| Msa1337000 | MtrunA17_Chr4g0065501 | 49.425 | 348 | 169 | 3 | 41 | 383 | 37 | 382 | 1.01e-106 | 319 |
| Msa1337000 | MtrunA17_Chr3g0140461 | 37.255 | 357 | 206 | 5 | 33 | 384 | 47 | 390 | 5.98e-67 | 218 |
| Msa1337000 | MtrunA17_Chr3g0140491 | 35.674 | 356 | 212 | 5 | 33 | 384 | 22 | 364 | 9.81e-65 | 210 |
| Msa1337000 | MtrunA17_Chr4g0065561 | 35.040 | 371 | 223 | 5 | 13 | 379 | 8 | 364 | 1.54e-60 | 208 |
| Msa1337000 | MtrunA17_Chr4g0065531 | 33.628 | 339 | 216 | 3 | 41 | 376 | 27 | 359 | 1.94e-55 | 186 |
| Msa1337000 | MtrunA17_Chr4g0065541 | 32.749 | 342 | 221 | 3 | 41 | 379 | 21 | 356 | 6.65e-51 | 182 |
| Msa1337000 | MtrunA17_Chr4g0065451 | 39.161 | 143 | 79 | 2 | 241 | 383 | 19 | 153 | 4.27e-25 | 99.8 |
| Msa1337000 | MtrunA17_Chr4g0065461 | 36.842 | 114 | 67 | 2 | 38 | 148 | 28 | 139 | 1.51e-16 | 75.9 |
| Msa1337000 | MtrunA17_Chr4g0066051 | 28.387 | 155 | 111 | 0 | 41 | 195 | 28 | 182 | 1.38e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1337000 | AT4G19810.2 | 41.449 | 345 | 194 | 3 | 41 | 383 | 28 | 366 | 6.99e-88 | 271 |
| Msa1337000 | AT4G19810.1 | 41.449 | 345 | 194 | 3 | 41 | 383 | 28 | 366 | 6.99e-88 | 271 |
| Msa1337000 | AT4G19800.1 | 40.762 | 341 | 195 | 2 | 41 | 380 | 7 | 341 | 6.17e-83 | 259 |
| Msa1337000 | AT4G19820.1 | 37.971 | 345 | 206 | 3 | 41 | 383 | 26 | 364 | 3.00e-76 | 240 |
| Msa1337000 | AT4G19750.1 | 37.465 | 355 | 209 | 5 | 33 | 380 | 4 | 352 | 9.12e-72 | 229 |
| Msa1337000 | AT4G19760.1 | 37.772 | 368 | 206 | 7 | 33 | 383 | 4 | 365 | 2.05e-71 | 228 |
| Msa1337000 | AT4G19720.1 | 35.955 | 356 | 204 | 5 | 41 | 383 | 6 | 350 | 1.98e-67 | 218 |
| Msa1337000 | AT4G19730.1 | 36.923 | 325 | 185 | 6 | 41 | 351 | 14 | 332 | 1.94e-59 | 196 |
| Msa1337000 | AT4G19770.1 | 39.464 | 261 | 151 | 2 | 122 | 381 | 1 | 255 | 2.78e-55 | 183 |
| Msa1337000 | AT4G19740.1 | 38.265 | 196 | 112 | 4 | 144 | 337 | 23 | 211 | 1.97e-30 | 116 |
Find 110 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCATAATAACACCAATTT+TGG | 0.129479 | tig0001355:-7754 | Msa1337000:CDS |
| TCCGAAATTAGTACCAATTT+TGG | 0.140026 | tig0001355:-7027 | Msa1337000:CDS |
| AACATGTCTTGTTGAGTTTC+AGG | 0.150216 | tig0001355:+7306 | Msa1337000:intergenic |
| GTTTGAAAGGCTATTTCTTT+TGG | 0.192066 | tig0001355:-6696 | Msa1337000:CDS |
| ATCCACGTGGCAAGAAAATA+TGG | 0.199050 | tig0001355:-7360 | Msa1337000:CDS |
| AATTCTACAATAAGGCTTAT+TGG | 0.208940 | tig0001355:-7183 | Msa1337000:CDS |
| TCCAAAATTGGTACTAATTT+CGG | 0.232381 | tig0001355:+7026 | Msa1337000:intergenic |
| ATTTCAAGTTTGAAGGAAAT+TGG | 0.266881 | tig0001355:+7549 | Msa1337000:intergenic |
| CGGGGTGGGAGCGGAGGCGG+TGG | 0.269593 | tig0001355:-6905 | Msa1337000:CDS |
| GTTATGGGTTTGGCTTTATA+TGG | 0.270864 | tig0001355:-6961 | Msa1337000:CDS |
| TTTACTACAATTCTACAATA+AGG | 0.300592 | tig0001355:-7191 | Msa1337000:CDS |
| TGATTGGTGATGTTGGAAAT+TGG | 0.302533 | tig0001355:+7879 | Msa1337000:intergenic |
| CAACGGGGTGGGAGCGGAGG+CGG | 0.330744 | tig0001355:-6908 | Msa1337000:CDS |
| TTGATGGTGTTGACTTGGAT+TGG | 0.339296 | tig0001355:-7335 | Msa1337000:CDS |
| CCATGAGTGGAGTCCAAAAT+TGG | 0.343332 | tig0001355:+7014 | Msa1337000:intergenic |
| GCTCCCACCCCGTTGACATT+TGG | 0.345635 | tig0001355:+6916 | Msa1337000:intergenic |
| TAACTTTGTATCAATTATAA+AGG | 0.353027 | tig0001355:+6036 | Msa1337000:intergenic |
| CGACCTGAAAAGTTGGTTAT+GGG | 0.357426 | tig0001355:-6976 | Msa1337000:CDS |
| TGAAAAGTTGGTTATGGGTT+TGG | 0.358876 | tig0001355:-6971 | Msa1337000:CDS |
| GGTTCGGTTCGCTAAGTCCT+TGG | 0.378994 | tig0001355:-6719 | Msa1337000:CDS |
| AGTTTGAAGGAAATTGGTTC+TGG | 0.383577 | tig0001355:+7555 | Msa1337000:intergenic |
| TCGACCTGAAAAGTTGGTTA+TGG | 0.384573 | tig0001355:-6977 | Msa1337000:CDS |
| TGATGGTGTTGACTTGGATT+GGG | 0.393541 | tig0001355:-7334 | Msa1337000:CDS |
| TGTATCAATTATAAAGGTCT+AGG | 0.402017 | tig0001355:+6042 | Msa1337000:intergenic |
| TGATGATACATTGAAGAAAA+TGG | 0.402523 | tig0001355:+7719 | Msa1337000:intergenic |
| CTACCATCCGTGTCAGTTGC+AGG | 0.408728 | tig0001355:+6880 | Msa1337000:intergenic |
| TGGCTTTATATGGACGGGCG+TGG | 0.410489 | tig0001355:-6951 | Msa1337000:CDS |
| TCACCGGCGGGGAACGGTGG+CGG | 0.416311 | tig0001355:+7481 | Msa1337000:intergenic |
| CTATCAATAAGTACTTAGAT+TGG | 0.421164 | tig0001355:-7128 | Msa1337000:CDS |
| TTGGGCCCTTGGGAAGGATA+AGG | 0.422516 | tig0001355:-6677 | Msa1337000:CDS |
| AAACTTGAAATCACAAAATC+CGG | 0.429982 | tig0001355:-7537 | Msa1337000:CDS |
| ATTCTTATGCGGGTACTACT+TGG | 0.429992 | tig0001355:-6777 | Msa1337000:CDS |
| TGAAGGATCCAAATGTCAAC+GGG | 0.437680 | tig0001355:-6924 | Msa1337000:CDS |
| GTTCGGTTCGCTAAGTCCTT+GGG | 0.446920 | tig0001355:-6718 | Msa1337000:CDS |
| ACATGGTCCGAGATCGTATC+CGG | 0.447523 | tig0001355:-7157 | Msa1337000:CDS |
| GGCTTTATATGGACGGGCGT+GGG | 0.454743 | tig0001355:-6950 | Msa1337000:CDS |
| GGTACGTGGGATAATAATAC+TGG | 0.460041 | tig0001355:-7078 | Msa1337000:CDS |
| TATTGTAGAATTGTAGTAAA+CGG | 0.462540 | tig0001355:+7194 | Msa1337000:intergenic |
| CGAACCTTAGCCGTTATTGA+AGG | 0.463955 | tig0001355:+6736 | Msa1337000:intergenic |
| ACTCCACTCATGGATCAAAT+CGG | 0.467968 | tig0001355:-7004 | Msa1337000:CDS |
| AAATGTCAACGGGGTGGGAG+CGG | 0.470085 | tig0001355:-6914 | Msa1337000:CDS |
| AATGCTATTAAAATTAAGTA+AGG | 0.482276 | tig0001355:+5889 | Msa1337000:intergenic |
| TGGGTTTGGCTTTATATGGA+CGG | 0.486221 | tig0001355:-6957 | Msa1337000:CDS |
| CTTCAATAACGGCTAAGGTT+CGG | 0.486769 | tig0001355:-6735 | Msa1337000:CDS |
| TGTTTGCTGAAGCCAAGGTT+AGG | 0.488465 | tig0001355:-7245 | Msa1337000:CDS |
| TGTTTGCAGCTTCAAATGCA+TGG | 0.493710 | tig0001355:-6102 | Msa1337000:intron |
| GTTTGCAGCTTCAAATGCAT+GGG | 0.495180 | tig0001355:-6101 | Msa1337000:intron |
| TGGGTTTGATGGTGTTGACT+TGG | 0.495194 | tig0001355:-7340 | Msa1337000:CDS |
| TGCTTTGTTTGCTGAAGCCA+AGG | 0.495351 | tig0001355:-7250 | Msa1337000:CDS |
| TGTCAACGGGGTGGGAGCGG+AGG | 0.495432 | tig0001355:-6911 | Msa1337000:CDS |
| TATCAATAAGTACTTAGATT+GGG | 0.495623 | tig0001355:-7127 | Msa1337000:CDS |
| GGGTTTGGCTTTATATGGAC+GGG | 0.497020 | tig0001355:-6956 | Msa1337000:CDS |
| CTCCACTCATGGATCAAATC+GGG | 0.499458 | tig0001355:-7003 | Msa1337000:CDS |
| CAACAAGACATGTTTAACCT+TGG | 0.500039 | tig0001355:-7297 | Msa1337000:CDS |
| GCAAGAAAATATGGGTTTGA+TGG | 0.503864 | tig0001355:-7351 | Msa1337000:CDS |
| TTGGTTTGTTGTACGAGGAA+TGG | 0.511153 | tig0001355:-7278 | Msa1337000:CDS |
| TTGAAGTTTAATAAAGAGAG+TGG | 0.514869 | tig0001355:-6838 | Msa1337000:CDS |
| TATGCGGGTACTACTTGGAT+CGG | 0.520264 | tig0001355:-6772 | Msa1337000:CDS |
| AGATCAGCATATTGGCCAGC+AGG | 0.522729 | tig0001355:-7645 | Msa1337000:CDS |
| GCTAAGTCCTTGGGTTTGAA+AGG | 0.525269 | tig0001355:-6709 | Msa1337000:CDS |
| TGGACGGGCGTGGGAGCTGA+AGG | 0.529639 | tig0001355:-6941 | Msa1337000:CDS |
| ATGGTGTTAGATCAGCATAT+TGG | 0.535251 | tig0001355:-7653 | Msa1337000:CDS |
| TACTTATTGATAGCTTGAGC+CGG | 0.537112 | tig0001355:+7138 | Msa1337000:intergenic |
| TCCACGTGGCAAGAAAATAT+GGG | 0.538797 | tig0001355:-7359 | Msa1337000:CDS |
| GCTTGAGCCGGATACGATCT+CGG | 0.541555 | tig0001355:+7150 | Msa1337000:intergenic |
| AATCCAATAATAAAAGTCAA+GGG | 0.544652 | tig0001355:+8003 | Msa1337000:intergenic |
| ATGCGGGTACTACTTGGATC+GGG | 0.546312 | tig0001355:-6771 | Msa1337000:CDS |
| TGATGACGGGCCTTCAATAA+CGG | 0.548821 | tig0001355:-6746 | Msa1337000:CDS |
| GAATCCAATAATAAAAGTCA+AGG | 0.549027 | tig0001355:+8002 | Msa1337000:intergenic |
| CTTGGATCGGGTATGATGAC+GGG | 0.552269 | tig0001355:-6759 | Msa1337000:CDS |
| ACTTGGATCGGGTATGATGA+CGG | 0.552521 | tig0001355:-6760 | Msa1337000:CDS |
| TCCAATCCTTATCCTTCCCA+AGG | 0.552810 | tig0001355:+6671 | Msa1337000:intergenic |
| CTATGATGAGGGATAAGTGA+TGG | 0.560785 | tig0001355:+7940 | Msa1337000:intergenic |
| CCCTTGGGAAGGATAAGGAT+TGG | 0.562576 | tig0001355:-6672 | Msa1337000:CDS |
| CGGGCCTTCAATAACGGCTA+AGG | 0.563983 | tig0001355:-6740 | Msa1337000:CDS |
| GATCCAAATGTCAACGGGGT+GGG | 0.564298 | tig0001355:-6919 | Msa1337000:CDS |
| GAAATAGCCTTTCAAACCCA+AGG | 0.570698 | tig0001355:+6702 | Msa1337000:intergenic |
| GTTCTGGTTGAATGAAAGCA+AGG | 0.575522 | tig0001355:+7571 | Msa1337000:intergenic |
| TGCTAATGCTGTGTATGATA+AGG | 0.576669 | tig0001355:-6815 | Msa1337000:CDS |
| GGGGTGGGAGCGGAGGCGGT+GGG | 0.578698 | tig0001355:-6904 | Msa1337000:CDS |
| CTGAAGGATCCAAATGTCAA+CGG | 0.582001 | tig0001355:-6925 | Msa1337000:CDS |
| TAGTTTGTGTCAATCAAAGA+AGG | 0.588638 | tig0001355:+7609 | Msa1337000:intergenic |
| GGGTGTTCGACCTGAAAAGT+TGG | 0.591114 | tig0001355:-6983 | Msa1337000:CDS |
| AAGTAAGGACTAATCTTACA+AGG | 0.601153 | tig0001355:+5904 | Msa1337000:intergenic |
| GTTTCGATTATCACGGTACG+TGG | 0.604563 | tig0001355:-7092 | Msa1337000:CDS |
| ACTCCGCCACCGTTCCCCGC+CGG | 0.609308 | tig0001355:-7484 | Msa1337000:CDS |
| CCAATCCTTATCCTTCCCAA+GGG | 0.616123 | tig0001355:+6672 | Msa1337000:intergenic |
| TGAACGGTTCAACTATGATG+AGG | 0.616718 | tig0001355:+7928 | Msa1337000:intergenic |
| TAACCTTGGTTTGTTGTACG+AGG | 0.617085 | tig0001355:-7283 | Msa1337000:CDS |
| GGTGGGACCTGCAACTGACA+CGG | 0.621426 | tig0001355:-6887 | Msa1337000:CDS |
| ATCCAATAATAAAAGTCAAG+GGG | 0.621819 | tig0001355:+8004 | Msa1337000:intergenic |
| ATAAGGCTTATTGGTAAACA+TGG | 0.622291 | tig0001355:-7174 | Msa1337000:CDS |
| GCATATATATAGAGAACAAG+TGG | 0.623772 | tig0001355:+7833 | Msa1337000:intergenic |
| CCAATGTGTTTCGATTATCA+CGG | 0.625563 | tig0001355:-7099 | Msa1337000:CDS |
| GGATCCAAATGTCAACGGGG+TGG | 0.627972 | tig0001355:-6920 | Msa1337000:CDS |
| GAACGGTTCAACTATGATGA+GGG | 0.630645 | tig0001355:+7929 | Msa1337000:intergenic |
| AGAATTGTAGTAAACGGCAG+AGG | 0.632126 | tig0001355:+7200 | Msa1337000:intergenic |
| TTTGCAGCTTCAAATGCATG+GGG | 0.637832 | tig0001355:-6100 | Msa1337000:intron |
| CACCCGATTTGATCCATGAG+TGG | 0.643006 | tig0001355:+7001 | Msa1337000:intergenic |
| CCGTGATAATCGAAACACAT+TGG | 0.644242 | tig0001355:+7099 | Msa1337000:intergenic |
| TTGAATTGTTGTGAATTGAA+CGG | 0.648549 | tig0001355:+7912 | Msa1337000:intergenic |
| GATTGGACCATCTCAAAACA+AGG | 0.657312 | tig0001355:-6655 | Msa1337000:intron |
| GGACCTGCAACTGACACGGA+TGG | 0.660097 | tig0001355:-6883 | Msa1337000:CDS |
| ATATATATGATCATAAACCA+TGG | 0.667935 | tig0001355:-7787 | Msa1337000:exon |
| ATTCCTCGTACAACAAACCA+AGG | 0.669048 | tig0001355:+7280 | Msa1337000:intergenic |
| TTTCGATTATCACGGTACGT+GGG | 0.671850 | tig0001355:-7091 | Msa1337000:CDS |
| AAGGGAACAAAAGTTGAACA+AGG | 0.674562 | tig0001355:+7980 | Msa1337000:intergenic |
| GCAGAGGTCAAAAGTAAACG+TGG | 0.725267 | tig0001355:+7216 | Msa1337000:intergenic |
| TATAAATTCAACAATCCACG+TGG | 0.728895 | tig0001355:-7373 | Msa1337000:CDS |
| GAAGGATCCAAATGTCAACG+GGG | 0.809484 | tig0001355:-6923 | Msa1337000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATAAATATATTAT+TGG | - | tig0001355:7460-7479 | Msa1337000:CDS | 0.0% |
| !!! | TTTTTAAATAAATATATTAT+TGG | - | tig0001355:7460-7479 | Msa1337000:CDS | 0.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | + | tig0001355:6023-6042 | None:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | + | tig0001355:7376-7395 | Msa1337000:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | - | tig0001355:7401-7420 | Msa1337000:CDS | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | + | tig0001355:7850-7869 | Msa1337000:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+TGG | + | tig0001355:7896-7915 | Msa1337000:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | - | tig0001355:7922-7941 | Msa1337000:five_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | - | tig0001355:7923-7942 | Msa1337000:five_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | tig0001355:7997-8016 | Msa1337000:intergenic | 15.0% |
| !!! | TATTAGTTATTTTATGTGAT+TGG | + | tig0001355:6023-6042 | Msa1337000:intergenic | 15.0% |
| !! | CAATAAAATTGAAAAAGAAA+AGG | + | tig0001355:7376-7395 | Msa1337000:intergenic | 15.0% |
| !! | ATTTACAAAAATAATGTGTT+TGG | - | tig0001355:7401-7420 | Msa1337000:CDS | 15.0% |
| !! | TAACTTTGTATCAATTATAA+AGG | + | tig0001355:7850-7869 | Msa1337000:intergenic | 15.0% |
| !! | AATACTATTCAAAAATATGA+TGG | + | tig0001355:7896-7915 | Msa1337000:intergenic | 15.0% |
| !! | AAATATACATGAAAAATCTA+AGG | - | tig0001355:7922-7941 | Msa1337000:five_prime_UTR | 15.0% |
| !! | AATATACATGAAAAATCTAA+GGG | - | tig0001355:7923-7942 | Msa1337000:five_prime_UTR | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+AGG | + | tig0001355:7997-8016 | Msa1337000:intergenic | 15.0% |
| !! | ATATATATGATCATAAACCA+TGG | - | tig0001355:6096-6115 | Msa1337000:CDS | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | tig0001355:6122-6141 | Msa1337000:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | tig0001355:6126-6145 | Msa1337000:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | tig0001355:6129-6148 | Msa1337000:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | tig0001355:6211-6230 | Msa1337000:intron | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | tig0001355:6219-6238 | Msa1337000:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | + | tig0001355:6692-6711 | Msa1337000:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | - | tig0001355:6692-6711 | Msa1337000:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | - | tig0001355:6756-6775 | Msa1337000:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | + | tig0001355:7637-7656 | Msa1337000:intergenic | 20.0% |
| !! | ATATATATGATCATAAACCA+TGG | - | tig0001355:6096-6115 | Msa1337000:CDS | 20.0% |
| !!! | TGTTATTATGATTTTTTGGA+CGG | + | tig0001355:6122-6141 | Msa1337000:intergenic | 20.0% |
| !!! | TTGGTGTTATTATGATTTTT+TGG | + | tig0001355:6126-6145 | Msa1337000:intergenic | 20.0% |
| !!! | AATCATAATAACACCAATTT+TGG | - | tig0001355:6129-6148 | Msa1337000:intron | 20.0% |
| !!! | CAATACCAATTTTTAAATCA+TGG | - | tig0001355:6211-6230 | Msa1337000:intron | 20.0% |
| !! | TAACACCATGATTTAAAAAT+TGG | + | tig0001355:6219-6238 | Msa1337000:intergenic | 20.0% |
| !! | TATTGTAGAATTGTAGTAAA+CGG | + | tig0001355:6692-6711 | Msa1337000:intergenic | 20.0% |
| !! | TTTACTACAATTCTACAATA+AGG | - | tig0001355:6692-6711 | Msa1337000:CDS | 20.0% |
| !! | TATCAATAAGTACTTAGATT+GGG | - | tig0001355:6756-6775 | Msa1337000:CDS | 20.0% |
| !! | TCTTTCTTACAATTAAACAT+TGG | + | tig0001355:7637-7656 | Msa1337000:intergenic | 20.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | + | tig0001355:5974-5993 | None:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | tig0001355:6167-6186 | Msa1337000:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | tig0001355:6337-6356 | Msa1337000:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | tig0001355:6344-6363 | Msa1337000:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | tig0001355:6346-6365 | Msa1337000:intron | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | tig0001355:6421-6440 | Msa1337000:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | tig0001355:6421-6440 | Msa1337000:intron | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | tig0001355:6424-6443 | Msa1337000:intron | 25.0% |
| ! | AATTCTACAATAAGGCTTAT+TGG | - | tig0001355:6700-6719 | Msa1337000:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | - | tig0001355:6755-6774 | Msa1337000:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | tig0001355:6860-6879 | Msa1337000:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | tig0001355:7045-7064 | Msa1337000:CDS | 25.0% |
| !! | TGTGTCTTTTTATTCTTATG+CGG | - | tig0001355:7095-7114 | Msa1337000:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | - | tig0001355:7188-7207 | Msa1337000:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | + | tig0001355:7585-7604 | Msa1337000:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | - | tig0001355:7663-7682 | Msa1337000:CDS | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | - | tig0001355:7684-7703 | Msa1337000:CDS | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | + | tig0001355:7844-7863 | Msa1337000:intergenic | 25.0% |
| ! | GAATCCAATAATAAAAGTCA+AGG | + | tig0001355:5884-5903 | Msa1337000:intergenic | 25.0% |
| ! | TTGAATTGTTGTGAATTGAA+CGG | + | tig0001355:5974-5993 | Msa1337000:intergenic | 25.0% |
| ! | TGATGATACATTGAAGAAAA+TGG | + | tig0001355:6167-6186 | Msa1337000:intergenic | 25.0% |
| !!! | ATTTCAAGTTTGAAGGAAAT+TGG | + | tig0001355:6337-6356 | Msa1337000:intergenic | 25.0% |
| !!! | TTTTGTGATTTCAAGTTTGA+AGG | + | tig0001355:6344-6363 | Msa1337000:intergenic | 25.0% |
| ! | AAACTTGAAATCACAAAATC+CGG | - | tig0001355:6346-6365 | Msa1337000:intron | 25.0% |
| !!! | ATTGATAAAAGTGTTTTCAC+CGG | + | tig0001355:6421-6440 | Msa1337000:intergenic | 25.0% |
| !! | GTGAAAACACTTTTATCAAT+TGG | - | tig0001355:6421-6440 | Msa1337000:intron | 25.0% |
| !! | AAAACACTTTTATCAATTGG+AGG | - | tig0001355:6424-6443 | Msa1337000:intron | 25.0% |
| ! | AATTCTACAATAAGGCTTAT+TGG | - | tig0001355:6700-6719 | Msa1337000:CDS | 25.0% |
| ! | CTATCAATAAGTACTTAGAT+TGG | - | tig0001355:6755-6774 | Msa1337000:CDS | 25.0% |
| ! | TCCAAAATTGGTACTAATTT+CGG | + | tig0001355:6860-6879 | Msa1337000:intergenic | 25.0% |
| ! | TTGAAGTTTAATAAAGAGAG+TGG | - | tig0001355:7045-7064 | Msa1337000:CDS | 25.0% |
| !! | TGTGTCTTTTTATTCTTATG+CGG | - | tig0001355:7095-7114 | Msa1337000:CDS | 25.0% |
| !!! | TTTGAAAGGCTATTTCTTTT+GGG | - | tig0001355:7188-7207 | Msa1337000:CDS | 25.0% |
| !!! | CAATAAGCATCTTTTTTTAG+AGG | + | tig0001355:7585-7604 | Msa1337000:intergenic | 25.0% |
| !! | TCAAAAGCAATCTAAGTTTT+TGG | - | tig0001355:7663-7682 | Msa1337000:CDS | 25.0% |
| !!! | GGTTCTAATTAAGATTTTGA+TGG | - | tig0001355:7684-7703 | Msa1337000:CDS | 25.0% |
| ! | TGTATCAATTATAAAGGTCT+AGG | + | tig0001355:7844-7863 | Msa1337000:intergenic | 25.0% |
| GAGAGAAAAATCAAAGACAA+GGG | + | tig0001355:5924-5943 | None:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | + | tig0001355:6014-6033 | None:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | + | tig0001355:6053-6072 | None:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | tig0001355:6145-6164 | Msa1337000:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | tig0001355:6277-6296 | Msa1337000:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | - | tig0001355:6510-6529 | Msa1337000:intron | 30.0% | |
| ATAAGGCTTATTGGTAAACA+TGG | - | tig0001355:6709-6728 | Msa1337000:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | tig0001355:6856-6875 | Msa1337000:CDS | 30.0% |
| ! | GTGTCTTTTTATTCTTATGC+GGG | - | tig0001355:7096-7115 | Msa1337000:CDS | 30.0% |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | - | tig0001355:7187-7206 | Msa1337000:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | - | tig0001355:7430-7449 | Msa1337000:CDS | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | - | tig0001355:7701-7720 | Msa1337000:CDS | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | - | tig0001355:7702-7721 | Msa1337000:CDS | 30.0% |
| CACAAATATAAGAAGACATC+AGG | + | tig0001355:7752-7771 | Msa1337000:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | tig0001355:7966-7985 | Msa1337000:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | tig0001355:7967-7986 | Msa1337000:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | + | tig0001355:7982-8001 | Msa1337000:intergenic | 30.0% | |
| GAGAGAAAAATCAAAGACAA+GGG | + | tig0001355:5924-5943 | Msa1337000:intergenic | 30.0% | |
| !!! | TTTTATGTGATTGGTGATGT+TGG | + | tig0001355:6014-6033 | Msa1337000:intergenic | 30.0% |
| GCATATATATAGAGAACAAG+TGG | + | tig0001355:6053-6072 | Msa1337000:intergenic | 30.0% | |
| GTCACTAGAAAAACCAAAAT+TGG | + | tig0001355:6145-6164 | Msa1337000:intergenic | 30.0% | |
| ! | TAGTTTGTGTCAATCAAAGA+AGG | + | tig0001355:6277-6296 | Msa1337000:intergenic | 30.0% |
| TATAAATTCAACAATCCACG+TGG | - | tig0001355:6510-6529 | Msa1337000:intron | 30.0% | |
| ATAAGGCTTATTGGTAAACA+TGG | - | tig0001355:6709-6728 | Msa1337000:CDS | 30.0% | |
| ! | TCCGAAATTAGTACCAATTT+TGG | - | tig0001355:6856-6875 | Msa1337000:CDS | 30.0% |
| ! | GTGTCTTTTTATTCTTATGC+GGG | - | tig0001355:7096-7115 | Msa1337000:CDS | 30.0% |
| !!! | GTTTGAAAGGCTATTTCTTT+TGG | - | tig0001355:7187-7206 | Msa1337000:CDS | 30.0% |
| TGAAAAACATGCAAGTCATT+TGG | - | tig0001355:7430-7449 | Msa1337000:CDS | 30.0% | |
| ! | TGATGGTTTTCTTACAACTT+AGG | - | tig0001355:7701-7720 | Msa1337000:CDS | 30.0% |
| ! | GATGGTTTTCTTACAACTTA+GGG | - | tig0001355:7702-7721 | Msa1337000:CDS | 30.0% |
| CACAAATATAAGAAGACATC+AGG | + | tig0001355:7752-7771 | Msa1337000:intergenic | 30.0% | |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | tig0001355:7966-7985 | Msa1337000:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | tig0001355:7967-7986 | Msa1337000:intergenic | 30.0% |
| AAGTAAGGACTAATCTTACA+AGG | + | tig0001355:7982-8001 | Msa1337000:intergenic | 30.0% | |
| AAGGGAACAAAAGTTGAACA+AGG | + | tig0001355:5906-5925 | None:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | + | tig0001355:5925-5944 | None:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | + | tig0001355:6007-6026 | None:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | tig0001355:6230-6249 | Msa1337000:intron | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | tig0001355:6331-6350 | Msa1337000:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | - | tig0001355:6356-6375 | Msa1337000:intron | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | tig0001355:6357-6376 | Msa1337000:intron | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | - | tig0001355:6358-6377 | Msa1337000:intron | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | tig0001355:6427-6446 | Msa1337000:intron | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | - | tig0001355:6532-6551 | Msa1337000:intron | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | tig0001355:6580-6599 | Msa1337000:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | - | tig0001355:6586-6605 | Msa1337000:intron | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | + | tig0001355:6748-6767 | Msa1337000:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | - | tig0001355:6784-6803 | Msa1337000:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | tig0001355:6913-6932 | Msa1337000:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | tig0001355:6912-6931 | Msa1337000:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | tig0001355:6922-6941 | Msa1337000:CDS | 35.0% |
| TGCTAATGCTGTGTATGATA+AGG | - | tig0001355:7068-7087 | Msa1337000:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | + | tig0001355:7238-7257 | Msa1337000:intergenic | 35.0% |
| AAGGGAACAAAAGTTGAACA+AGG | + | tig0001355:5906-5925 | Msa1337000:intergenic | 35.0% | |
| GGAGAGAAAAATCAAAGACA+AGG | + | tig0001355:5925-5944 | Msa1337000:intergenic | 35.0% | |
| !! | TGATTGGTGATGTTGGAAAT+TGG | + | tig0001355:6007-6026 | Msa1337000:intergenic | 35.0% |
| ! | ATGGTGTTAGATCAGCATAT+TGG | - | tig0001355:6230-6249 | Msa1337000:intron | 35.0% |
| ! | AGTTTGAAGGAAATTGGTTC+TGG | + | tig0001355:6331-6350 | Msa1337000:intergenic | 35.0% |
| TCACAAAATCCGGCAAAAAA+TGG | - | tig0001355:6356-6375 | Msa1337000:intron | 35.0% | |
| CACAAAATCCGGCAAAAAAT+GGG | - | tig0001355:6357-6376 | Msa1337000:intron | 35.0% | |
| ACAAAATCCGGCAAAAAATG+GGG | - | tig0001355:6358-6377 | Msa1337000:intron | 35.0% | |
| ! | ACACTTTTATCAATTGGAGG+TGG | - | tig0001355:6427-6446 | Msa1337000:intron | 35.0% |
| GCAAGAAAATATGGGTTTGA+TGG | - | tig0001355:6532-6551 | Msa1337000:intron | 35.0% | |
| ! | AACATGTCTTGTTGAGTTTC+AGG | + | tig0001355:6580-6599 | Msa1337000:intergenic | 35.0% |
| CAACAAGACATGTTTAACCT+TGG | - | tig0001355:6586-6605 | Msa1337000:intron | 35.0% | |
| ! | TACTTATTGATAGCTTGAGC+CGG | + | tig0001355:6748-6767 | Msa1337000:intergenic | 35.0% |
| CCAATGTGTTTCGATTATCA+CGG | - | tig0001355:6784-6803 | Msa1337000:CDS | 35.0% | |
| ! | AAACCCATAACCAACTTTTC+AGG | + | tig0001355:6913-6932 | Msa1337000:intergenic | 35.0% |
| ! | TGAAAAGTTGGTTATGGGTT+TGG | - | tig0001355:6912-6931 | Msa1337000:CDS | 35.0% |
| !! | GTTATGGGTTTGGCTTTATA+TGG | - | tig0001355:6922-6941 | Msa1337000:CDS | 35.0% |
| TGCTAATGCTGTGTATGATA+AGG | - | tig0001355:7068-7087 | Msa1337000:CDS | 35.0% | |
| !!! | TGAAGTACCTTGTTTTGAGA+TGG | + | tig0001355:7238-7257 | Msa1337000:intergenic | 35.0% |
| CTATGATGAGGGATAAGTGA+TGG | + | tig0001355:5946-5965 | None:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | + | tig0001355:5957-5976 | None:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | + | tig0001355:5958-5977 | None:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | + | tig0001355:6116-6135 | Msa1337000:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | tig0001355:6315-6334 | Msa1337000:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | tig0001355:6368-6387 | Msa1337000:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | + | tig0001355:6417-6436 | Msa1337000:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | + | tig0001355:6418-6437 | Msa1337000:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | tig0001355:6430-6449 | Msa1337000:intron | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | - | tig0001355:6523-6542 | Msa1337000:intron | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | - | tig0001355:6524-6543 | Msa1337000:intron | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | tig0001355:6548-6567 | Msa1337000:intron | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | tig0001355:6549-6568 | Msa1337000:intron | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | tig0001355:6600-6619 | Msa1337000:intron | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | + | tig0001355:6606-6625 | Msa1337000:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | tig0001355:6605-6624 | Msa1337000:intron | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | + | tig0001355:6686-6705 | Msa1337000:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | tig0001355:6787-6806 | Msa1337000:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | tig0001355:6792-6811 | Msa1337000:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | tig0001355:6805-6824 | Msa1337000:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | - | tig0001355:6879-6898 | Msa1337000:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | tig0001355:6906-6925 | Msa1337000:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | tig0001355:6907-6926 | Msa1337000:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | tig0001355:6926-6945 | Msa1337000:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | - | tig0001355:6958-6977 | Msa1337000:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | tig0001355:6959-6978 | Msa1337000:CDS | 40.0% | |
| ATTCTTATGCGGGTACTACT+TGG | - | tig0001355:7106-7125 | Msa1337000:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | - | tig0001355:7148-7167 | Msa1337000:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | + | tig0001355:7184-7203 | Msa1337000:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | - | tig0001355:7228-7247 | Msa1337000:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | tig0001355:7781-7800 | Msa1337000:exon | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | tig0001355:7782-7801 | Msa1337000:exon | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | tig0001355:7783-7802 | Msa1337000:exon | 40.0% | |
| CTATGATGAGGGATAAGTGA+TGG | + | tig0001355:5946-5965 | Msa1337000:intergenic | 40.0% | |
| GAACGGTTCAACTATGATGA+GGG | + | tig0001355:5957-5976 | Msa1337000:intergenic | 40.0% | |
| TGAACGGTTCAACTATGATG+AGG | + | tig0001355:5958-5977 | Msa1337000:intergenic | 40.0% | |
| !!! | TATGATTTTTTGGACGGCCA+TGG | + | tig0001355:6116-6135 | Msa1337000:intergenic | 40.0% |
| ! | GTTCTGGTTGAATGAAAGCA+AGG | + | tig0001355:6315-6334 | Msa1337000:intergenic | 40.0% |
| !!! | ATTCTGACCCCATTTTTTGC+CGG | + | tig0001355:6368-6387 | Msa1337000:intergenic | 40.0% |
| !!! | ATAAAAGTGTTTTCACCGGC+GGG | + | tig0001355:6417-6436 | Msa1337000:intergenic | 40.0% |
| !!! | GATAAAAGTGTTTTCACCGG+CGG | + | tig0001355:6418-6437 | Msa1337000:intergenic | 40.0% |
| ! | CTTTTATCAATTGGAGGTGG+TGG | - | tig0001355:6430-6449 | Msa1337000:intron | 40.0% |
| ATCCACGTGGCAAGAAAATA+TGG | - | tig0001355:6523-6542 | Msa1337000:intron | 40.0% | |
| TCCACGTGGCAAGAAAATAT+GGG | - | tig0001355:6524-6543 | Msa1337000:intron | 40.0% | |
| !! | TTGATGGTGTTGACTTGGAT+TGG | - | tig0001355:6548-6567 | Msa1337000:intron | 40.0% |
| !! | TGATGGTGTTGACTTGGATT+GGG | - | tig0001355:6549-6568 | Msa1337000:intron | 40.0% |
| !! | TAACCTTGGTTTGTTGTACG+AGG | - | tig0001355:6600-6619 | Msa1337000:intron | 40.0% |
| ATTCCTCGTACAACAAACCA+AGG | + | tig0001355:6606-6625 | Msa1337000:intergenic | 40.0% | |
| !! | TTGGTTTGTTGTACGAGGAA+TGG | - | tig0001355:6605-6624 | Msa1337000:intron | 40.0% |
| AGAATTGTAGTAAACGGCAG+AGG | + | tig0001355:6686-6705 | Msa1337000:intergenic | 40.0% | |
| CCGTGATAATCGAAACACAT+TGG | + | tig0001355:6787-6806 | Msa1337000:intergenic | 40.0% | |
| TTTCGATTATCACGGTACGT+GGG | - | tig0001355:6792-6811 | Msa1337000:CDS | 40.0% | |
| GGTACGTGGGATAATAATAC+TGG | - | tig0001355:6805-6824 | Msa1337000:CDS | 40.0% | |
| ACTCCACTCATGGATCAAAT+CGG | - | tig0001355:6879-6898 | Msa1337000:CDS | 40.0% | |
| ! | TCGACCTGAAAAGTTGGTTA+TGG | - | tig0001355:6906-6925 | Msa1337000:CDS | 40.0% |
| ! | CGACCTGAAAAGTTGGTTAT+GGG | - | tig0001355:6907-6926 | Msa1337000:CDS | 40.0% |
| !! | TGGGTTTGGCTTTATATGGA+CGG | - | tig0001355:6926-6945 | Msa1337000:CDS | 40.0% |
| CTGAAGGATCCAAATGTCAA+CGG | - | tig0001355:6958-6977 | Msa1337000:CDS | 40.0% | |
| TGAAGGATCCAAATGTCAAC+GGG | - | tig0001355:6959-6978 | Msa1337000:CDS | 40.0% | |
| ATTCTTATGCGGGTACTACT+TGG | - | tig0001355:7106-7125 | Msa1337000:CDS | 40.0% | |
| CTTCAATAACGGCTAAGGTT+CGG | - | tig0001355:7148-7167 | Msa1337000:CDS | 40.0% | |
| GAAATAGCCTTTCAAACCCA+AGG | + | tig0001355:7184-7203 | Msa1337000:intergenic | 40.0% | |
| GATTGGACCATCTCAAAACA+AGG | - | tig0001355:7228-7247 | Msa1337000:CDS | 40.0% | |
| TGTTTGCAGCTTCAAATGCA+TGG | - | tig0001355:7781-7800 | Msa1337000:exon | 40.0% | |
| GTTTGCAGCTTCAAATGCAT+GGG | - | tig0001355:7782-7801 | Msa1337000:exon | 40.0% | |
| TTTGCAGCTTCAAATGCATG+GGG | - | tig0001355:7783-7802 | Msa1337000:exon | 40.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | tig0001355:6256-6275 | Msa1337000:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | + | tig0001355:6416-6435 | Msa1337000:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | + | tig0001355:6528-6547 | Msa1337000:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | - | tig0001355:6543-6562 | Msa1337000:intron | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | - | tig0001355:6633-6652 | Msa1337000:intron | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | - | tig0001355:6638-6657 | Msa1337000:intron | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | + | tig0001355:6653-6672 | Msa1337000:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | + | tig0001355:6670-6689 | Msa1337000:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | tig0001355:6791-6810 | Msa1337000:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | tig0001355:6872-6891 | Msa1337000:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | tig0001355:6869-6888 | Msa1337000:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | - | tig0001355:6880-6899 | Msa1337000:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | tig0001355:6927-6946 | Msa1337000:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | - | tig0001355:6960-6979 | Msa1337000:CDS | 45.0% | |
| TATGCGGGTACTACTTGGAT+CGG | - | tig0001355:7111-7130 | Msa1337000:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | - | tig0001355:7123-7142 | Msa1337000:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | - | tig0001355:7137-7156 | Msa1337000:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | + | tig0001355:7150-7169 | Msa1337000:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | - | tig0001355:7174-7193 | Msa1337000:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | - | tig0001355:7196-7215 | Msa1337000:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | + | tig0001355:7214-7233 | Msa1337000:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | + | tig0001355:7215-7234 | Msa1337000:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | - | tig0001355:7710-7729 | Msa1337000:CDS | 45.0% | |
| GGTGAAAAATCATCACCTGC+TGG | + | tig0001355:6256-6275 | Msa1337000:intergenic | 45.0% | |
| !!! | TAAAAGTGTTTTCACCGGCG+GGG | + | tig0001355:6416-6435 | Msa1337000:intergenic | 45.0% |
| ! | ACCCATATTTTCTTGCCACG+TGG | + | tig0001355:6528-6547 | Msa1337000:intergenic | 45.0% |
| !! | TGGGTTTGATGGTGTTGACT+TGG | - | tig0001355:6543-6562 | Msa1337000:intron | 45.0% |
| !! | TGCTTTGTTTGCTGAAGCCA+AGG | - | tig0001355:6633-6652 | Msa1337000:intron | 45.0% |
| ! | TGTTTGCTGAAGCCAAGGTT+AGG | - | tig0001355:6638-6657 | Msa1337000:intron | 45.0% |
| ! | ACGTGGTTTTCTCCTAACCT+TGG | + | tig0001355:6653-6672 | Msa1337000:intergenic | 45.0% |
| GCAGAGGTCAAAAGTAAACG+TGG | + | tig0001355:6670-6689 | Msa1337000:intergenic | 45.0% | |
| GTTTCGATTATCACGGTACG+TGG | - | tig0001355:6791-6810 | Msa1337000:CDS | 45.0% | |
| CCATGAGTGGAGTCCAAAAT+TGG | + | tig0001355:6872-6891 | Msa1337000:intergenic | 45.0% | |
| ! | CCAATTTTGGACTCCACTCA+TGG | - | tig0001355:6869-6888 | Msa1337000:CDS | 45.0% |
| CTCCACTCATGGATCAAATC+GGG | - | tig0001355:6880-6899 | Msa1337000:CDS | 45.0% | |
| !! | GGGTTTGGCTTTATATGGAC+GGG | - | tig0001355:6927-6946 | Msa1337000:CDS | 45.0% |
| GAAGGATCCAAATGTCAACG+GGG | - | tig0001355:6960-6979 | Msa1337000:CDS | 45.0% | |
| TATGCGGGTACTACTTGGAT+CGG | - | tig0001355:7111-7130 | Msa1337000:CDS | 45.0% | |
| ACTTGGATCGGGTATGATGA+CGG | - | tig0001355:7123-7142 | Msa1337000:CDS | 45.0% | |
| !! | TGATGACGGGCCTTCAATAA+CGG | - | tig0001355:7137-7156 | Msa1337000:CDS | 45.0% |
| CGAACCTTAGCCGTTATTGA+AGG | + | tig0001355:7150-7169 | Msa1337000:intergenic | 45.0% | |
| GCTAAGTCCTTGGGTTTGAA+AGG | - | tig0001355:7174-7193 | Msa1337000:CDS | 45.0% | |
| !!! | GCTATTTCTTTTGGGCCCTT+GGG | - | tig0001355:7196-7215 | Msa1337000:CDS | 45.0% |
| CCAATCCTTATCCTTCCCAA+GGG | + | tig0001355:7214-7233 | Msa1337000:intergenic | 45.0% | |
| TCCAATCCTTATCCTTCCCA+AGG | + | tig0001355:7215-7234 | Msa1337000:intergenic | 45.0% | |
| TCTTACAACTTAGGGTAGCG+TGG | - | tig0001355:7710-7729 | Msa1337000:CDS | 45.0% | |
| !!! | AAAAAATGTATTTATATTTT+TGG | + | tig0001355:7299-7318 | Msa1337000:intergenic | 5.0% |
| !!! | AAAAAATGTATTTATATTTT+TGG | + | tig0001355:7299-7318 | Msa1337000:intergenic | 5.0% |
| AGATCAGCATATTGGCCAGC+AGG | - | tig0001355:6238-6257 | Msa1337000:intron | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | - | tig0001355:6726-6745 | Msa1337000:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | tig0001355:6885-6904 | Msa1337000:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | - | tig0001355:6900-6919 | Msa1337000:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | - | tig0001355:6964-6983 | Msa1337000:CDS | 50.0% | |
| ATGCGGGTACTACTTGGATC+GGG | - | tig0001355:7112-7131 | Msa1337000:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | tig0001355:7124-7143 | Msa1337000:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | tig0001355:7165-7184 | Msa1337000:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | tig0001355:7195-7214 | Msa1337000:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | - | tig0001355:7200-7219 | Msa1337000:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | - | tig0001355:7211-7230 | Msa1337000:CDS | 50.0% | |
| AGATCAGCATATTGGCCAGC+AGG | - | tig0001355:6238-6257 | Msa1337000:intron | 50.0% | |
| ACATGGTCCGAGATCGTATC+CGG | - | tig0001355:6726-6745 | Msa1337000:CDS | 50.0% | |
| ! | CACCCGATTTGATCCATGAG+TGG | + | tig0001355:6885-6904 | Msa1337000:intergenic | 50.0% |
| GGGTGTTCGACCTGAAAAGT+TGG | - | tig0001355:6900-6919 | Msa1337000:CDS | 50.0% | |
| GATCCAAATGTCAACGGGGT+GGG | - | tig0001355:6964-6983 | Msa1337000:CDS | 50.0% | |
| ATGCGGGTACTACTTGGATC+GGG | - | tig0001355:7112-7131 | Msa1337000:CDS | 50.0% | |
| CTTGGATCGGGTATGATGAC+GGG | - | tig0001355:7124-7143 | Msa1337000:CDS | 50.0% | |
| ! | GTTCGGTTCGCTAAGTCCTT+GGG | - | tig0001355:7165-7184 | Msa1337000:CDS | 50.0% |
| !!! | GGCTATTTCTTTTGGGCCCT+TGG | - | tig0001355:7195-7214 | Msa1337000:CDS | 50.0% |
| ! | TTTCTTTTGGGCCCTTGGGA+AGG | - | tig0001355:7200-7219 | Msa1337000:CDS | 50.0% |
| CCCTTGGGAAGGATAAGGAT+TGG | - | tig0001355:7211-7230 | Msa1337000:CDS | 50.0% | |
| GCTTGAGCCGGATACGATCT+CGG | + | tig0001355:6736-6755 | Msa1337000:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | - | tig0001355:6932-6951 | Msa1337000:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | - | tig0001355:6933-6952 | Msa1337000:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | - | tig0001355:6963-6982 | Msa1337000:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | - | tig0001355:6969-6988 | Msa1337000:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | tig0001355:7006-7025 | Msa1337000:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | - | tig0001355:7143-7162 | Msa1337000:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | tig0001355:7164-7183 | Msa1337000:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | - | tig0001355:7206-7225 | Msa1337000:CDS | 55.0% | |
| GCTTGAGCCGGATACGATCT+CGG | + | tig0001355:6736-6755 | Msa1337000:intergenic | 55.0% | |
| !! | TGGCTTTATATGGACGGGCG+TGG | - | tig0001355:6932-6951 | Msa1337000:CDS | 55.0% |
| ! | GGCTTTATATGGACGGGCGT+GGG | - | tig0001355:6933-6952 | Msa1337000:CDS | 55.0% |
| GGATCCAAATGTCAACGGGG+TGG | - | tig0001355:6963-6982 | Msa1337000:CDS | 55.0% | |
| AAATGTCAACGGGGTGGGAG+CGG | - | tig0001355:6969-6988 | Msa1337000:CDS | 55.0% | |
| CTACCATCCGTGTCAGTTGC+AGG | + | tig0001355:7006-7025 | Msa1337000:intergenic | 55.0% | |
| CGGGCCTTCAATAACGGCTA+AGG | - | tig0001355:7143-7162 | Msa1337000:CDS | 55.0% | |
| ! | GGTTCGGTTCGCTAAGTCCT+TGG | - | tig0001355:7164-7183 | Msa1337000:CDS | 55.0% |
| TTGGGCCCTTGGGAAGGATA+AGG | - | tig0001355:7206-7225 | Msa1337000:CDS | 55.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | + | tig0001355:6411-6430 | Msa1337000:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | + | tig0001355:6970-6989 | Msa1337000:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | tig0001355:6996-7015 | Msa1337000:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | tig0001355:7000-7019 | Msa1337000:CDS | 60.0% | |
| ! | GTGTTTTCACCGGCGGGGAA+CGG | + | tig0001355:6411-6430 | Msa1337000:intergenic | 60.0% |
| GCTCCCACCCCGTTGACATT+TGG | + | tig0001355:6970-6989 | Msa1337000:intergenic | 60.0% | |
| GGTGGGACCTGCAACTGACA+CGG | - | tig0001355:6996-7015 | Msa1337000:CDS | 60.0% | |
| GGACCTGCAACTGACACGGA+TGG | - | tig0001355:7000-7019 | Msa1337000:CDS | 60.0% | |
| ! | TTTTCACCGGCGGGGAACGG+TGG | + | tig0001355:6408-6427 | Msa1337000:intergenic | 65.0% |
| ! | TTTTCACCGGCGGGGAACGG+TGG | + | tig0001355:6408-6427 | Msa1337000:intergenic | 65.0% |
| TGGACGGGCGTGGGAGCTGA+AGG | - | tig0001355:6942-6961 | Msa1337000:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | - | tig0001355:6972-6991 | Msa1337000:CDS | 70.0% | |
| TGGACGGGCGTGGGAGCTGA+AGG | - | tig0001355:6942-6961 | Msa1337000:CDS | 70.0% | |
| TGTCAACGGGGTGGGAGCGG+AGG | - | tig0001355:6972-6991 | Msa1337000:CDS | 70.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | - | tig0001355:6399-6418 | Msa1337000:intron | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | + | tig0001355:6405-6424 | Msa1337000:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | - | tig0001355:6975-6994 | Msa1337000:CDS | 75.0% | |
| ACTCCGCCACCGTTCCCCGC+CGG | - | tig0001355:6399-6418 | Msa1337000:intron | 75.0% | |
| TCACCGGCGGGGAACGGTGG+CGG | + | tig0001355:6405-6424 | Msa1337000:intergenic | 75.0% | |
| CAACGGGGTGGGAGCGGAGG+CGG | - | tig0001355:6975-6994 | Msa1337000:CDS | 75.0% | |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | - | tig0001355:6979-6998 | Msa1337000:CDS | 80.0% |
| ! | GGGGTGGGAGCGGAGGCGGT+GGG | - | tig0001355:6979-6998 | Msa1337000:CDS | 80.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | - | tig0001355:6978-6997 | Msa1337000:CDS | 85.0% |
| ! | CGGGGTGGGAGCGGAGGCGG+TGG | - | tig0001355:6978-6997 | Msa1337000:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001355 | gene | 5882 | 8023 | 5882 | ID=Msa1337000;Name=Msa1337000 |
| tig0001355 | mRNA | 5882 | 8023 | 5882 | ID=Msa1337000-mRNA-1;Parent=Msa1337000;Name=Msa1337000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=233|1|1|1|1|1|2|211|385 |
| tig0001355 | exon | 5882 | 6115 | 5882 | ID=Msa1337000-mRNA-1:exon:943;Parent=Msa1337000-mRNA-1 |
| tig0001355 | exon | 6656 | 8023 | 6656 | ID=Msa1337000-mRNA-1:exon:942;Parent=Msa1337000-mRNA-1 |
| tig0001355 | five_prime_UTR | 7791 | 8023 | 7791 | ID=Msa1337000-mRNA-1:five_prime_utr;Parent=Msa1337000-mRNA-1 |
| tig0001355 | CDS | 6656 | 7790 | 6656 | ID=Msa1337000-mRNA-1:cds;Parent=Msa1337000-mRNA-1 |
| tig0001355 | CDS | 6093 | 6115 | 6093 | ID=Msa1337000-mRNA-1:cds;Parent=Msa1337000-mRNA-1 |
| tig0001355 | three_prime_UTR | 5882 | 6092 | 5882 | ID=Msa1337000-mRNA-1:three_prime_utr;Parent=Msa1337000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
