AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725450 MtrunA17_Chr5g0417111 88.947 950 63 3 1 949 1 909 0.0 1550
Msa0725450 MtrunA17_Chr8g0361681 60.051 393 134 7 572 949 452 836 1.79e-142 445
Msa0725450 MtrunA17_Chr7g0217181 43.451 481 224 14 490 948 290 744 2.12e-110 357
Msa0725450 MtrunA17_Chr8g0361691 55.621 169 65 3 700 859 1 168 4.02e-47 166
Msa0725450 MtrunA17_Chr4g0000281 30.508 413 221 14 561 949 55 425 9.38e-34 135
Msa0725450 MtrunA17_Chr8g0391071 31.274 259 151 7 705 948 315 561 2.36e-23 105
Msa0725450 MtrunA17_Chr6g0484451 29.956 227 138 7 637 856 305 517 6.63e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725450 AT5G39785.1 41.505 412 200 12 567 949 207 606 3.60e-97 318
Msa0725450 AT5G39785.3 41.505 412 200 12 567 949 207 606 3.60e-97 318
Msa0725450 AT5G39785.5 41.505 412 200 12 567 949 207 606 3.60e-97 318
Msa0725450 AT5G39785.2 41.162 413 201 13 567 949 207 607 1.20e-94 311
Msa0725450 AT5G39785.4 39.130 437 200 13 567 949 207 631 1.12e-91 305
Msa0725450 AT1G69610.3 45.729 398 177 11 568 949 218 592 3.36e-90 299
Msa0725450 AT1G69610.2 45.729 398 177 11 568 949 263 637 1.67e-89 299
Msa0725450 AT1G69610.1 45.729 398 177 11 568 949 262 636 1.96e-89 298
Msa0725450 AT3G20260.1 29.341 334 196 10 637 949 123 437 1.71e-30 126
Msa0725450 AT1G73850.2 28.402 338 195 10 637 948 317 633 1.53e-25 113
Msa0725450 AT1G73850.1 28.402 338 195 10 637 948 317 633 1.53e-25 113
Msa0725450 AT3G01175.1 29.240 342 184 14 637 948 262 575 9.73e-22 101

Find 157 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTCTTTGTATGCATTT+TGG 0.103094 5_1:+25165485 None:intergenic
AGGAGTGGAGTTAGAAATTT+TGG 0.147143 5_1:-25161514 Msa0725450:three_prime_UTR
GATGATAAAGTTTCAAAATT+TGG 0.171216 5_1:-25165127 Msa0725450:CDS
GTTCGAACAGATAAAGAAAA+TGG 0.172724 5_1:-25162767 Msa0725450:CDS
TTTGAAGCATAATTTGTATT+TGG 0.174654 5_1:+25167021 None:intergenic
CCATTTGAGATGGTGGATTT+TGG 0.181688 5_1:+25163936 None:intergenic
CTTCATGTTCCAGCTATTAA+AGG 0.195836 5_1:-25163588 Msa0725450:intron
GTTGATCCTCATGGTGCTTT+TGG 0.199273 5_1:+25161991 None:intergenic
AGTTTGGTTGGATTTGATTA+TGG 0.246788 5_1:-25166841 Msa0725450:five_prime_UTR
AAGAATCAATGCGTGTGTTT+TGG 0.250995 5_1:-25162796 Msa0725450:CDS
CATCATAGTTATCTAATAAA+TGG 0.276814 5_1:-25161659 Msa0725450:three_prime_UTR
GAAGAAACAGAGCAAGAAAC+AGG 0.284674 5_1:-25165664 Msa0725450:CDS
TCCATACTCTAACTTGGTTA+TGG 0.317119 5_1:-25166901 Msa0725450:five_prime_UTR
TCCATAACCAAGTTAGAGTA+TGG 0.323571 5_1:+25166900 None:intergenic
AGATGAAACAATAGAAGATT+TGG 0.325892 5_1:-25165170 Msa0725450:CDS
TCATCAACTTCATATAGATT+TGG 0.328013 5_1:-25163844 Msa0725450:CDS
TCCTGAATGTATTAACTTCA+TGG 0.328041 5_1:+25161533 None:intergenic
GTTAGAGTATGGAGAAGAAA+TGG 0.330475 5_1:+25166911 None:intergenic
TTTCATGATTTCAAGGTTGA+TGG 0.335926 5_1:-25166480 Msa0725450:CDS
AATTATGTGTTCTATTCATT+TGG 0.341860 5_1:-25166691 Msa0725450:CDS
GATGAAGCTAGGAAGAAAAT+AGG 0.343222 5_1:-25165742 Msa0725450:CDS
ACTAGAAGGTTTGCAATTGC+AGG 0.343665 5_1:+25162698 None:intergenic
AAATGGCAAGAGAAATTAAA+AGG 0.345455 5_1:-25161642 Msa0725450:three_prime_UTR
CAAATAGGTAAACTGCCTAA+TGG 0.353262 5_1:-25167251 Msa0725450:five_prime_UTR
GGTATTGAAATTAATTTAAG+AGG 0.353651 5_1:+25163957 None:intergenic
CTAGTTCAAGTGGTCTAATC+TGG 0.355957 5_1:-25165279 Msa0725450:CDS
TCCATGAAGTTAATACATTC+AGG 0.356671 5_1:-25161534 Msa0725450:three_prime_UTR
TGCAACCTTCCACTTGCAAT+TGG 0.357673 5_1:+25162830 None:intergenic
ACCTATTTGTTCACTTAACT+TGG 0.359962 5_1:+25167265 None:intergenic
CTTTATCATCAAATAAAGAT+TGG 0.363583 5_1:+25165140 None:intergenic
TCTTTCTCTGAATCAAGCTT+TGG 0.373783 5_1:+25165463 None:intergenic
TTTGCTACCAAGAAACTCAT+AGG 0.381015 5_1:+25165225 None:intergenic
TAAAGAATCGTTGTGTGATT+AGG 0.384028 5_1:-25163617 Msa0725450:CDS
GATGAATTTGTTCAAGAAGA+TGG 0.396227 5_1:-25166219 Msa0725450:CDS
AAATAGGTAAACTGCCTAAT+GGG 0.398325 5_1:-25167250 Msa0725450:five_prime_UTR
ACTTCATATAGATTTGGAAT+TGG 0.398632 5_1:-25163838 Msa0725450:CDS
AAAAGATATAAGTTGCTTTG+TGG 0.399117 5_1:-25165575 Msa0725450:CDS
CGCTTTGAGAGCGAGGCGTT+TGG 0.399670 5_1:-25165379 Msa0725450:CDS
GAAGAAGGAGGAAAATTTGA+TGG 0.400416 5_1:-25166003 Msa0725450:CDS
GATTTGGAATTGGTATATGT+TGG 0.401399 5_1:-25163828 Msa0725450:CDS
TTTACATAATTCTGAATCCT+TGG 0.404409 5_1:+25163636 None:intergenic
AAAGATCTTATTCCACAAGT+TGG 0.415099 5_1:-25167001 Msa0725450:five_prime_UTR
TTTAATTCTTCAACCACTCT+TGG 0.416981 5_1:+25164809 None:intergenic
AATACTGATTGATTCCCATT+AGG 0.419183 5_1:+25167236 None:intergenic
TCTTGTGTGGCATACAAGTT+TGG 0.421420 5_1:-25161608 Msa0725450:three_prime_UTR
TCAACTTGATCATGAGCAAT+TGG 0.421810 5_1:-25161973 Msa0725450:CDS
AGCTTCACTTCAATCTTCAA+TGG 0.422108 5_1:+25164785 None:intergenic
CATAGGTATAACCATGTTGC+TGG 0.424551 5_1:-25163723 Msa0725450:CDS
TATCAAACCATGCATGCATT+AGG 0.425507 5_1:-25164680 Msa0725450:intron
AATGTGATTTCTAAGCAAAT+TGG 0.427664 5_1:-25162737 Msa0725450:CDS
TGAGAAAAGAACAAGTACTA+TGG 0.427979 5_1:-25161899 Msa0725450:CDS
GTATTCGAATGTCCACTAGA+AGG 0.428041 5_1:+25162684 None:intergenic
CCAAAATCCACCATCTCAAA+TGG 0.430562 5_1:-25163936 Msa0725450:CDS
AAACTGAATCGCAATGTTGT+TGG 0.431487 5_1:+25165547 None:intergenic
TCCAAGTTAAGTGAACAAAT+AGG 0.431689 5_1:-25167266 Msa0725450:five_prime_UTR
TTGGGTTGCGATTGATTTCA+AGG 0.431841 5_1:-25161941 Msa0725450:CDS
CTTAAGGACATAGTAAGAAC+TGG 0.431997 5_1:-25162035 Msa0725450:CDS
TTGGACAAATTTGCCTCTCA+TGG 0.432910 5_1:-25163809 Msa0725450:CDS
TGAAAATGAGTATATAGAAA+TGG 0.433374 5_1:-25165086 Msa0725450:CDS
GCTAGAATTCAATGATCAAA+TGG 0.452356 5_1:-25164765 Msa0725450:CDS
TGGGAAACGGTTGAAACATC+AGG 0.458060 5_1:+25165505 None:intergenic
TGGTAAGAAAATAGTTGAAA+AGG 0.460148 5_1:-25165806 Msa0725450:CDS
TTCTTCTCCATACTCTAACT+TGG 0.460502 5_1:-25166907 Msa0725450:five_prime_UTR
CATTCGAATACAACTACAAA+AGG 0.463325 5_1:-25162672 Msa0725450:intron
GTGTGGCATACAAGTTTGGC+TGG 0.466450 5_1:-25161604 Msa0725450:three_prime_UTR
ATAAAATGATATACTAGCTT+AGG 0.467935 5_1:-25161757 Msa0725450:three_prime_UTR
TTCGAACAGATAAAGAAAAT+GGG 0.468460 5_1:-25162766 Msa0725450:CDS
GAATAATCTCTCAAAATTTG+TGG 0.472353 5_1:-25163914 Msa0725450:CDS
AACTCTAATGTTCATGAAGA+AGG 0.476348 5_1:-25166018 Msa0725450:CDS
ATTTCAATTTCATGAACAGT+TGG 0.477035 5_1:+25166144 None:intergenic
AGCAATTGGTTGCTCAAGTT+GGG 0.477639 5_1:-25161959 Msa0725450:CDS
CTTTCATGTGTAGCCAACAT+AGG 0.483006 5_1:+25163781 None:intergenic
GAGCAATTGGTTGCTCAAGT+TGG 0.485402 5_1:-25161960 Msa0725450:CDS
GTCTCTGGTGTTATCGAAGA+TGG 0.485406 5_1:-25165826 Msa0725450:CDS
TTCAAAATTTGGAGTTGATG+AGG 0.486316 5_1:-25165116 Msa0725450:CDS
AAAAGTGAAGAGGAATTGAA+TGG 0.487614 5_1:-25164989 Msa0725450:CDS
ATGACTCACAAAGTTCTCAT+AGG 0.488269 5_1:-25163740 Msa0725450:CDS
AATGAGAATGTAAATGAAGA+TGG 0.489169 5_1:-25165955 Msa0725450:CDS
TTCAAAACCATGTTCTTCAA+AGG 0.489333 5_1:+25165039 None:intergenic
AACCATTCATAGTGGAAAAG+TGG 0.489671 5_1:+25166969 None:intergenic
AATACATCACCTTTAATAGC+TGG 0.490017 5_1:+25163579 None:intergenic
TGATAGTAAAGGAGGTGAGG+AGG 0.491322 5_1:-25162855 Msa0725450:CDS
GATTATTCCATTTGAGATGG+TGG 0.492227 5_1:+25163929 None:intergenic
ATGGGAGCATGAAGAAATAG+TGG 0.496187 5_1:-25164939 Msa0725450:CDS
ATCCTTGGTCCACCTTGGAA+TGG 0.499329 5_1:+25163651 None:intergenic
AGAAATGGAACCTCATATGA+AGG 0.501310 5_1:-25165071 Msa0725450:CDS
TCTGAATCCTTGGTCCACCT+TGG 0.512737 5_1:+25163646 None:intergenic
ATCAAATCAACCATTCATAG+TGG 0.512972 5_1:+25166961 None:intergenic
AACAGTTGGATGATTCTCAA+TGG 0.513251 5_1:+25166158 None:intergenic
TCATACTCAGATTCTTCTTG+AGG 0.513731 5_1:-25166666 Msa0725450:intron
TTTGAGAGCGAGGCGTTTGG+TGG 0.515766 5_1:-25165376 Msa0725450:CDS
TTAGAGTATGGAGAAGAAAT+GGG 0.518320 5_1:+25166912 None:intergenic
TACAGAGGAATCTTCATTCA+AGG 0.518842 5_1:-25165782 Msa0725450:CDS
AGATGATAGTAAAGGAGGTG+AGG 0.520728 5_1:-25162858 Msa0725450:CDS
AAAATCTTCTCCTACAATCT+CGG 0.520935 5_1:-25167059 Msa0725450:five_prime_UTR
GAGTCTAAGCTTCATGAAGA+TGG 0.521287 5_1:-25165883 Msa0725450:CDS
AATGTATTAACTTCATGGAA+TGG 0.521872 5_1:+25161538 None:intergenic
GTTCTCACCTAATGCATGCA+TGG 0.527529 5_1:+25164673 None:intergenic
AGAGATTATTCCATTTGAGA+TGG 0.527855 5_1:+25163926 None:intergenic
TAATAGCTGGAACATGAAGC+AGG 0.539080 5_1:+25163592 None:intergenic
AAGAAACAGAGCAAGAAACA+GGG 0.542577 5_1:-25165663 Msa0725450:CDS
GTATTGAAATTAATTTAAGA+GGG 0.545143 5_1:+25163958 None:intergenic
TGGACAAATTTGCCTCTCAT+GGG 0.546353 5_1:-25163808 Msa0725450:CDS
AGAGCTATGCAGAGAAAATG+AGG 0.547615 5_1:-25164721 Msa0725450:CDS
TGTTCAAGAAGATGGCGGTA+AGG 0.548460 5_1:-25166211 Msa0725450:CDS
AATAGTTGAAAAGGATACAG+AGG 0.551069 5_1:-25165797 Msa0725450:CDS
TGCTTAAGAAAACTCTACAT+TGG 0.559303 5_1:-25166799 Msa0725450:five_prime_UTR
TTGAAAACCTTTGAAGAACA+TGG 0.559839 5_1:-25165046 Msa0725450:CDS
AGGTATGAAGAAAAGTGAAG+AGG 0.564125 5_1:-25164999 Msa0725450:CDS
TCCACATCGCTTTGAGAGCG+AGG 0.566623 5_1:-25165386 Msa0725450:CDS
TCAGAATCATCTAGTTCAAG+TGG 0.570109 5_1:-25165289 Msa0725450:CDS
CTAAATTGGTTGAATCAACA+TGG 0.571962 5_1:+25161801 None:intergenic
CTAGAAGGTTTGCAATTGCA+GGG 0.575689 5_1:+25162699 None:intergenic
TGGGTTGCGATTGATTTCAA+GGG 0.577928 5_1:-25161940 Msa0725450:CDS
AGTCTAATCTTGATGAAGCT+AGG 0.579177 5_1:-25165753 Msa0725450:CDS
TGGCGGTAAGGAAAATGAAG+AGG 0.580009 5_1:-25166199 Msa0725450:CDS
AATAATAGAGCATGTCATAG+TGG 0.580914 5_1:-25166046 Msa0725450:CDS
TGCAATTGCAAACCTTCTAG+TGG 0.582906 5_1:-25162696 Msa0725450:CDS
GAAATGGAACCTCATATGAA+GGG 0.582942 5_1:-25165070 Msa0725450:CDS
AAAGATGAAAAGGAAATGGA+AGG 0.586804 5_1:-25165925 Msa0725450:CDS
TCTCATGGGAAATCCTATGT+TGG 0.587870 5_1:-25163794 Msa0725450:CDS
TTCTTAGATGATAGTAAAGG+AGG 0.591113 5_1:-25162863 Msa0725450:intron
AGGATCCAATTGCAAGTGGA+AGG 0.591596 5_1:-25162835 Msa0725450:CDS
AACATAGGATTTCCCATGAG+AGG 0.593117 5_1:+25163796 None:intergenic
TGATTCTTAGATGATAGTAA+AGG 0.600208 5_1:-25162866 Msa0725450:intron
AATTCACCATCACAATCACT+TGG 0.601313 5_1:-25166513 Msa0725450:CDS
CCATCACAATCACTTGGTGA+TGG 0.602096 5_1:-25166507 Msa0725450:CDS
GAGTGTGAAATACATGAAGA+GGG 0.604673 5_1:-25166261 Msa0725450:CDS
GGTAAGGAAAATGAAGAGGT+AGG 0.605055 5_1:-25166195 Msa0725450:CDS
GCCTCGCTCTCAAAGCGATG+TGG 0.606049 5_1:+25165385 None:intergenic
CATGATCAAGTTGATCCTCA+TGG 0.607491 5_1:+25161982 None:intergenic
GTTGCGATTGATTTCAAGGG+TGG 0.608906 5_1:-25161937 Msa0725450:CDS
AAGCAGGAAGATTGTCCATG+TGG 0.609998 5_1:-25161844 Msa0725450:CDS
ATAGAGAATGAGCCATTCCA+AGG 0.613859 5_1:-25163663 Msa0725450:CDS
GAGGAGGATCCAATTGCAAG+TGG 0.618801 5_1:-25162839 Msa0725450:CDS
AAAATGAAGAGGTAGGTGAA+AGG 0.619923 5_1:-25166188 Msa0725450:CDS
GTTGAAATTCACCAGCAACA+TGG 0.623650 5_1:+25163712 None:intergenic
TCTAATGTTCATGAAGAAGG+AGG 0.630120 5_1:-25166015 Msa0725450:CDS
GAAGTTAATACATTCAGGAG+TGG 0.630480 5_1:-25161529 Msa0725450:three_prime_UTR
TGAGTGTGAAATACATGAAG+AGG 0.633059 5_1:-25166262 Msa0725450:CDS
ATAACTATGATGTATGAGCA+AGG 0.637372 5_1:+25161670 None:intergenic
GAAGTATTCATACCTACTAG+TGG 0.638361 5_1:+25165603 None:intergenic
AGCCATTCCAAGGTGGACCA+AGG 0.640696 5_1:-25163653 Msa0725450:CDS
CTCAAAGCGATGTGGAACAT+CGG 0.642227 5_1:+25165393 None:intergenic
GAATCAATCAGTATTAGTAA+CGG 0.664486 5_1:-25167228 Msa0725450:five_prime_UTR
CCATCACCAAGTGATTGTGA+TGG 0.664557 5_1:+25166507 None:intergenic
AGAAACAGAGCAAGAAACAG+GGG 0.664775 5_1:-25165662 Msa0725450:CDS
TCTAAGCTTCATGAAGATGG+AGG 0.675091 5_1:-25165880 Msa0725450:CDS
TTGAAGAATTCAAGACAAGG+AGG 0.678769 5_1:-25164899 Msa0725450:CDS
TGGCAAGAGAAATTAAAAGG+TGG 0.681180 5_1:-25161639 Msa0725450:three_prime_UTR
GAATTTGTTCAAGAAGATGG+CGG 0.685285 5_1:-25166216 Msa0725450:CDS
GGTGGTGCAATGTTCTTGTG+TGG 0.706093 5_1:-25161621 Msa0725450:three_prime_UTR
GAGAATGAGCCATTCCAAGG+TGG 0.710023 5_1:-25163660 Msa0725450:CDS
GAAGTTCCAAAAGCACCATG+AGG 0.719374 5_1:-25161997 Msa0725450:CDS
GAATTGAAGAATTCAAGACA+AGG 0.733492 5_1:-25164902 Msa0725450:CDS
TGTCAAAACAGAGATATACG+TGG 0.749133 5_1:-25166307 Msa0725450:CDS
ACTATGATGTATGAGCAAGG+AGG 0.804047 5_1:+25161673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTATATATAAAGTTCA+TGG - chr5_1:25162143-25162162 Msa0725450:intron 10.0%
!! AAATAAACAAAATATCTTTA+TGG + chr5_1:25164460-25164479 None:intergenic 10.0%
!! TAAATTTAGTATGTAAAAAA+AGG + chr5_1:25165765-25165784 None:intergenic 10.0%
!!! TTTTACATACTAAATTTAAT+AGG - chr5_1:25165767-25165786 Msa0725450:CDS 10.0%
!!! ATAATCTTTTTTCAAAAGTT+TGG - chr5_1:25161892-25161911 Msa0725450:CDS 15.0%
!!! TGTTTTGTTTATTTTGTTTT+AGG - chr5_1:25162177-25162196 Msa0725450:intron 15.0%
!! CATAATTAGTAAAATATGTT+GGG + chr5_1:25164434-25164453 None:intergenic 15.0%
!! ACATAATTAGTAAAATATGT+TGG + chr5_1:25164435-25164454 None:intergenic 15.0%
!! TAGTATATAAAATGAAGAAT+AGG + chr5_1:25164557-25164576 None:intergenic 15.0%
!!! TTCTTCATTTTATATACTAA+AGG - chr5_1:25164558-25164577 Msa0725450:intron 15.0%
!! AATTAGTCATAATAATCAAA+TGG + chr5_1:25164726-25164745 None:intergenic 15.0%
!! GTATTGAAATTAATTTAAGA+GGG + chr5_1:25164794-25164813 None:intergenic 15.0%
!!! TGATAAGATACTATTTTTTA+GGG + chr5_1:25165225-25165244 None:intergenic 15.0%
!!! TTGATAAGATACTATTTTTT+AGG + chr5_1:25165226-25165245 None:intergenic 15.0%
!!! TTAATAGGAGAATATTTTAT+AGG - chr5_1:25165782-25165801 Msa0725450:CDS 15.0%
!! TTAGAATTGAATTGATTATA+AGG - chr5_1:25166234-25166253 Msa0725450:CDS 15.0%
!!! TTTTTCTCAAACAATTTAAA+TGG + chr5_1:25166463-25166482 None:intergenic 15.0%
!!! AATCACTTTTATAACTAAAA+AGG - chr5_1:25166486-25166505 Msa0725450:CDS 15.0%
!!! AAAAAAGTATATCTCTAAAT+TGG + chr5_1:25166965-25166984 None:intergenic 15.0%
!!! TTTGAAGCATAATTTGTATT+TGG + chr5_1:25161731-25161750 None:intergenic 20.0%
!!! CAATATATTTTGTTTTGTGA+AGG - chr5_1:25161979-25161998 Msa0725450:CDS 20.0%
!! AATTATGTGTTCTATTCATT+TGG - chr5_1:25162058-25162077 Msa0725450:intron 20.0%
!!! TGTTTTAGGTTTCTTAAATT+AGG - chr5_1:25162191-25162210 Msa0725450:intron 20.0%
!!! TGAATTAATGAGATCTTTTT+TGG + chr5_1:25162222-25162241 None:intergenic 20.0%
!! CTTTATCATCAAATAAAGAT+TGG + chr5_1:25163612-25163631 None:intergenic 20.0%
!! GATGATAAAGTTTCAAAATT+TGG - chr5_1:25163622-25163641 Msa0725450:CDS 20.0%
!! TGAAAATGAGTATATAGAAA+TGG - chr5_1:25163663-25163682 Msa0725450:CDS 20.0%
!!! GGTATTGAAATTAATTTAAG+AGG + chr5_1:25164795-25164814 None:intergenic 20.0%
!!! GATGAACAAGTTTTAAAAAT+GGG + chr5_1:25164890-25164909 None:intergenic 20.0%
!!! TGATGAACAAGTTTTAAAAA+TGG + chr5_1:25164891-25164910 None:intergenic 20.0%
!!! CAAATGATTTTTCTCTATAT+TGG + chr5_1:25165419-25165438 None:intergenic 20.0%
!! ATGATCACTATATAATGTAT+GGG + chr5_1:25165671-25165690 None:intergenic 20.0%
!! TATGATCACTATATAATGTA+TGG + chr5_1:25165672-25165691 None:intergenic 20.0%
!!! TTTAACATGAAAATTTTCTC+CGG - chr5_1:25166382-25166401 Msa0725450:CDS 20.0%
!!! TATTTTCACTCTTAAAAATC+AGG + chr5_1:25166620-25166639 None:intergenic 20.0%
!!! ATAAAATGATATACTAGCTT+AGG - chr5_1:25166992-25167011 Msa0725450:five_prime_UTR 20.0%
!! CATCATAGTTATCTAATAAA+TGG - chr5_1:25167090-25167109 Msa0725450:five_prime_UTR 20.0%
!!! GATAGTGTATAATTTTAGAT+AGG - chr5_1:25167257-25167276 Msa0725450:five_prime_UTR 20.0%
!!! ATAATTTTAGATAGGAATGT+AGG - chr5_1:25167265-25167284 Msa0725450:five_prime_UTR 20.0%
! GAATCAATCAGTATTAGTAA+CGG - chr5_1:25161521-25161540 Msa0725450:three_prime_UTR 25.0%
!!! AGATTTTGATTTGTATGACT+TGG + chr5_1:25161605-25161624 None:intergenic 25.0%
! AAAAAAAAAACCGAGATTGT+AGG + chr5_1:25161703-25161722 None:intergenic 25.0%
!!! CAATCTCGGTTTTTTTTTTT+TGG - chr5_1:25161704-25161723 Msa0725450:three_prime_UTR 25.0%
!! ACTTGGTTATGGAAATTTTA+TGG - chr5_1:25161859-25161878 Msa0725450:CDS 25.0%
!! CTTGGTTATGGAAATTTTAT+GGG - chr5_1:25161860-25161879 Msa0725450:CDS 25.0%
!!! TCTTTTTTCAAAAGTTTGGT+TGG - chr5_1:25161896-25161915 Msa0725450:CDS 25.0%
!! GTTTTCTTAAGCATGAAAAA+TGG + chr5_1:25161943-25161962 None:intergenic 25.0%
!!! TTTGAATTTTGTTTCTGTGA+GGG - chr5_1:25162024-25162043 Msa0725450:CDS 25.0%
!!! GAATTTTGTTTTGCTTTTTG+AGG - chr5_1:25162112-25162131 Msa0725450:intron 25.0%
!! TGGAAATTTTCATGATTTCA+AGG - chr5_1:25162262-25162281 Msa0725450:intron 25.0%
!!! AGTTGTCTAATTTCCTTTTT+TGG - chr5_1:25162303-25162322 Msa0725450:intron 25.0%
! ATTTCAATTTCATGAACAGT+TGG + chr5_1:25162608-25162627 None:intergenic 25.0%
! AATGAGAATGTAAATGAAGA+TGG - chr5_1:25162794-25162813 Msa0725450:CDS 25.0%
! TGGTATGAAAAAAGATGAAA+AGG - chr5_1:25162814-25162833 Msa0725450:CDS 25.0%
! GAAAAAAGATGAAAAGGAAA+TGG - chr5_1:25162820-25162839 Msa0725450:CDS 25.0%
! TGGTAAGAAAATAGTTGAAA+AGG - chr5_1:25162943-25162962 Msa0725450:intron 25.0%
!! GAAACAAATATCACAGTTTT+CGG - chr5_1:25163037-25163056 Msa0725450:intron 25.0%
!! AAAAGATATAAGTTGCTTTG+TGG - chr5_1:25163174-25163193 Msa0725450:intron 25.0%
!! AAACTCTTTGTATGCATTTT+GGG + chr5_1:25163266-25163285 None:intergenic 25.0%
! AGATGAAACAATAGAAGATT+TGG - chr5_1:25163579-25163598 Msa0725450:intron 25.0%
! TGACTTCAATCTACAATATT+TGG + chr5_1:25164266-25164285 None:intergenic 25.0%
! AGCATGTAATAAAGTTAAGT+AGG - chr5_1:25164639-25164658 Msa0725450:intron 25.0%
! GAATAATCTCTCAAAATTTG+TGG - chr5_1:25164835-25164854 Msa0725450:CDS 25.0%
! TCATCAACTTCATATAGATT+TGG - chr5_1:25164905-25164924 Msa0725450:CDS 25.0%
!! ACTTCATATAGATTTGGAAT+TGG - chr5_1:25164911-25164930 Msa0725450:CDS 25.0%
!!! TTTTTCAAGTATTGATGCAA+AGG - chr5_1:25165060-25165079 Msa0725450:CDS 25.0%
! TTTACATAATTCTGAATCCT+TGG + chr5_1:25165116-25165135 None:intergenic 25.0%
! TGATCACTATATAATGTATG+GGG + chr5_1:25165670-25165689 None:intergenic 25.0%
! TGATTCTTAGATGATAGTAA+AGG - chr5_1:25165883-25165902 Msa0725450:CDS 25.0%
! TTCGAACAGATAAAGAAAAT+GGG - chr5_1:25165983-25166002 Msa0725450:CDS 25.0%
! AATGTGATTTCTAAGCAAAT+TGG - chr5_1:25166012-25166031 Msa0725450:CDS 25.0%
!!! ACAAATTGATTTTAGTGACT+TGG - chr5_1:25166210-25166229 Msa0725450:CDS 25.0%
!!! CAAATTGATTTTAGTGACTT+GGG - chr5_1:25166211-25166230 Msa0725450:CDS 25.0%
! TATAAGGTCATGAGTTTAAA+TGG - chr5_1:25166250-25166269 Msa0725450:CDS 25.0%
!! TTCCACTTAAACACATTTTA+AGG + chr5_1:25166285-25166304 None:intergenic 25.0%
! TCCTGCTTAAAAATTTGATT+CGG + chr5_1:25166893-25166912 None:intergenic 25.0%
! AAATGGCAAGAGAAATTAAA+AGG - chr5_1:25167107-25167126 Msa0725450:five_prime_UTR 25.0%
! AATGTATTAACTTCATGGAA+TGG + chr5_1:25167214-25167233 None:intergenic 25.0%
TCCAAGTTAAGTGAACAAAT+AGG - chr5_1:25161483-25161502 Msa0725450:three_prime_UTR 30.0%
ACCTATTTGTTCACTTAACT+TGG + chr5_1:25161487-25161506 None:intergenic 30.0%
AAATAGGTAAACTGCCTAAT+GGG - chr5_1:25161499-25161518 Msa0725450:three_prime_UTR 30.0%
! AATACTGATTGATTCCCATT+AGG + chr5_1:25161516-25161535 None:intergenic 30.0%
AAAATCTTCTCCTACAATCT+CGG - chr5_1:25161690-25161709 Msa0725450:three_prime_UTR 30.0%
AAAGATCTTATTCCACAAGT+TGG - chr5_1:25161748-25161767 Msa0725450:three_prime_UTR 30.0%
ATCAAATCAACCATTCATAG+TGG + chr5_1:25161791-25161810 None:intergenic 30.0%
TTAGAGTATGGAGAAGAAAT+GGG + chr5_1:25161840-25161859 None:intergenic 30.0%
AGTTTGGTTGGATTTGATTA+TGG - chr5_1:25161908-25161927 Msa0725450:CDS 30.0%
TGCTTAAGAAAACTCTACAT+TGG - chr5_1:25161950-25161969 Msa0725450:CDS 30.0%
!!! CTTTGAATTTTGTTTCTGTG+AGG - chr5_1:25162023-25162042 Msa0725450:CDS 30.0%
TTTCATGATTTCAAGGTTGA+TGG - chr5_1:25162269-25162288 Msa0725450:intron 30.0%
GAAAATCATCACTCCAAAAA+AGG + chr5_1:25162319-25162338 None:intergenic 30.0%
! GATGAATTTGTTCAAGAAGA+TGG - chr5_1:25162530-25162549 Msa0725450:intron 30.0%
!!! AATGAAGAGTTTTGTTTGCT+TGG - chr5_1:25162625-25162644 Msa0725450:intron 30.0%
!!! AGTTTTGTTTGCTTGGAAAA+TGG - chr5_1:25162632-25162651 Msa0725450:intron 30.0%
AATAATAGAGCATGTCATAG+TGG - chr5_1:25162703-25162722 Msa0725450:CDS 30.0%
AACTCTAATGTTCATGAAGA+AGG - chr5_1:25162731-25162750 Msa0725450:CDS 30.0%
AAAGATGAAAAGGAAATGGA+AGG - chr5_1:25162824-25162843 Msa0725450:CDS 30.0%
AATAGTTGAAAAGGATACAG+AGG - chr5_1:25162952-25162971 Msa0725450:intron 30.0%
! AAATATCACAGTTTTCGGTA+AGG - chr5_1:25163042-25163061 Msa0725450:intron 30.0%
!! TTTGTATGCATTTTGGGAAA+CGG + chr5_1:25163260-25163279 None:intergenic 30.0%
! GAAACTCTTTGTATGCATTT+TGG + chr5_1:25163267-25163286 None:intergenic 30.0%
! TCATTTTCCTATGAGTTTCT+TGG - chr5_1:25163517-25163536 Msa0725450:intron 30.0%
!! TTCAAAATTTGGAGTTGATG+AGG - chr5_1:25163633-25163652 Msa0725450:CDS 30.0%
! TTGAAAACCTTTGAAGAACA+TGG - chr5_1:25163703-25163722 Msa0725450:CDS 30.0%
TTCAAAACCATGTTCTTCAA+AGG + chr5_1:25163713-25163732 None:intergenic 30.0%
AAAAGTGAAGAGGAATTGAA+TGG - chr5_1:25163760-25163779 Msa0725450:CDS 30.0%
! TGACGAAGATGATTTTGAAT+GGG - chr5_1:25163792-25163811 Msa0725450:CDS 30.0%
GAATTGAAGAATTCAAGACA+AGG - chr5_1:25163847-25163866 Msa0725450:CDS 30.0%
TTTAATTCTTCAACCACTCT+TGG + chr5_1:25163943-25163962 None:intergenic 30.0%
GCTAGAATTCAATGATCAAA+TGG - chr5_1:25163984-25164003 Msa0725450:intron 30.0%
AAGATCAAAACATGAAGTCT+TGG - chr5_1:25164198-25164217 Msa0725450:intron 30.0%
!! GCTTAGATGCAATTTTAGTA+TGG - chr5_1:25164387-25164406 Msa0725450:intron 30.0%
!! TAGATGCAATTTTAGTATGG+TGG - chr5_1:25164390-25164409 Msa0725450:intron 30.0%
!! AGATGCAATTTTAGTATGGT+GGG - chr5_1:25164391-25164410 Msa0725450:intron 30.0%
AGAGATTATTCCATTTGAGA+TGG + chr5_1:25164826-25164845 None:intergenic 30.0%
!!! GTGATCTTTGTTGATTTTCT+TGG + chr5_1:25164861-25164880 None:intergenic 30.0%
! GATTTGGAATTGGTATATGT+TGG - chr5_1:25164921-25164940 Msa0725450:CDS 30.0%
TAAAGAATCGTTGTGTGATT+AGG - chr5_1:25165132-25165151 Msa0725450:CDS 30.0%
AATACATCACCTTTAATAGC+TGG + chr5_1:25165173-25165192 None:intergenic 30.0%
! TTGGTGTTTAGTTATGAGTT+TGG + chr5_1:25165372-25165391 None:intergenic 30.0%
ACCAATAATGTTGAGAAACA+TGG - chr5_1:25165387-25165406 Msa0725450:CDS 30.0%
ACCATGTTTCTCAACATTAT+TGG + chr5_1:25165391-25165410 None:intergenic 30.0%
ATAATGTTGAGAAACATGGT+AGG - chr5_1:25165391-25165410 Msa0725450:CDS 30.0%
TAATGTTGAGAAACATGGTA+GGG - chr5_1:25165392-25165411 Msa0725450:CDS 30.0%
CATAAGACGCACTTTATATA+TGG - chr5_1:25165492-25165511 Msa0725450:CDS 30.0%
CCTTAACACATTGAGAATAT+GGG + chr5_1:25165570-25165589 None:intergenic 30.0%
TCCTTAACACATTGAGAATA+TGG + chr5_1:25165571-25165590 None:intergenic 30.0%
! CTACTGTGTATATCTTTTAG+TGG - chr5_1:25165611-25165630 Msa0725450:CDS 30.0%
! GGTTATAAACACTTTCAAGT+TGG + chr5_1:25165731-25165750 None:intergenic 30.0%
TAAAAAAAGGCTTTACGTGT+AGG + chr5_1:25165752-25165771 None:intergenic 30.0%
TTCTTAGATGATAGTAAAGG+AGG - chr5_1:25165886-25165905 Msa0725450:CDS 30.0%
GTTCGAACAGATAAAGAAAA+TGG - chr5_1:25165982-25166001 Msa0725450:CDS 30.0%
CATTCGAATACAACTACAAA+AGG - chr5_1:25166077-25166096 Msa0725450:CDS 30.0%
CACAATTAAAACATGCAAGT+TGG + chr5_1:25166137-25166156 None:intergenic 30.0%
GACCTTAAAATGTGTTTAAG+TGG - chr5_1:25166280-25166299 Msa0725450:CDS 30.0%
ACAGAAGGATAAAAAGCTTA+AGG - chr5_1:25166698-25166717 Msa0725450:CDS 30.0%
TGAGAAAAGAACAAGTACTA+TGG - chr5_1:25166850-25166869 Msa0725450:five_prime_UTR 30.0%
!! ACCGAATCAAATTTTTAAGC+AGG - chr5_1:25166889-25166908 Msa0725450:five_prime_UTR 30.0%
CATGGAAAAAGCAAAAAAGA+AGG + chr5_1:25166933-25166952 None:intergenic 30.0%
CTAAATTGGTTGAATCAACA+TGG + chr5_1:25166951-25166970 None:intergenic 30.0%
ATAACTATGATGTATGAGCA+AGG + chr5_1:25167082-25167101 None:intergenic 30.0%
TCCATGAAGTTAATACATTC+AGG - chr5_1:25167215-25167234 Msa0725450:five_prime_UTR 30.0%
TCCTGAATGTATTAACTTCA+TGG + chr5_1:25167219-25167238 None:intergenic 30.0%
CAAATAGGTAAACTGCCTAA+TGG - chr5_1:25161498-25161517 Msa0725450:three_prime_UTR 35.0%
!!! ACACGTTTTGAGGATTGAAA+TGG + chr5_1:25161548-25161567 None:intergenic 35.0%
! AACCATTCATAGTGGAAAAG+TGG + chr5_1:25161783-25161802 None:intergenic 35.0%
GTTAGAGTATGGAGAAGAAA+TGG + chr5_1:25161841-25161860 None:intergenic 35.0%
TTCTTCTCCATACTCTAACT+TGG - chr5_1:25161842-25161861 Msa0725450:CDS 35.0%
TCCATACTCTAACTTGGTTA+TGG - chr5_1:25161848-25161867 Msa0725450:CDS 35.0%
TCCATAACCAAGTTAGAGTA+TGG + chr5_1:25161852-25161871 None:intergenic 35.0%
TCATACTCAGATTCTTCTTG+AGG - chr5_1:25162083-25162102 Msa0725450:intron 35.0%
AATTCACCATCACAATCACT+TGG - chr5_1:25162236-25162255 Msa0725450:intron 35.0%
!! AACAGAGTTCTCTGTTTTGA+AGG - chr5_1:25162391-25162410 Msa0725450:intron 35.0%
TGTCAAAACAGAGATATACG+TGG - chr5_1:25162442-25162461 Msa0725450:intron 35.0%
!!! CGTGGAGAGTATTTTATCAA+AGG - chr5_1:25162460-25162479 Msa0725450:intron 35.0%
!!! GGAGAGTATTTTATCAAAGG+TGG - chr5_1:25162463-25162482 Msa0725450:intron 35.0%
TGAGTGTGAAATACATGAAG+AGG - chr5_1:25162487-25162506 Msa0725450:intron 35.0%
GAGTGTGAAATACATGAAGA+GGG - chr5_1:25162488-25162507 Msa0725450:intron 35.0%
! GAATTTGTTCAAGAAGATGG+CGG - chr5_1:25162533-25162552 Msa0725450:intron 35.0%
AAAATGAAGAGGTAGGTGAA+AGG - chr5_1:25162561-25162580 Msa0725450:intron 35.0%
AACAGTTGGATGATTCTCAA+TGG + chr5_1:25162594-25162613 None:intergenic 35.0%
TCTAATGTTCATGAAGAAGG+AGG - chr5_1:25162734-25162753 Msa0725450:CDS 35.0%
GAAGAAGGAGGAAAATTTGA+TGG - chr5_1:25162746-25162765 Msa0725450:CDS 35.0%
!! AATGGAAGGCTCTGATTTTA+AGG - chr5_1:25162838-25162857 Msa0725450:CDS 35.0%
TACAGAGGAATCTTCATTCA+AGG - chr5_1:25162967-25162986 Msa0725450:intron 35.0%
AGTCTAATCTTGATGAAGCT+AGG - chr5_1:25162996-25163015 Msa0725450:intron 35.0%
GATGAAGCTAGGAAGAAAAT+AGG - chr5_1:25163007-25163026 Msa0725450:intron 35.0%
AAGAAACAGAGCAAGAAACA+GGG - chr5_1:25163086-25163105 Msa0725450:intron 35.0%
CGATAAAAACAACCACTAGT+AGG - chr5_1:25163134-25163153 Msa0725450:intron 35.0%
! GAAGTATTCATACCTACTAG+TGG + chr5_1:25163149-25163168 None:intergenic 35.0%
AAACTGAATCGCAATGTTGT+TGG + chr5_1:25163205-25163224 None:intergenic 35.0%
TCTTTCTCTGAATCAAGCTT+TGG + chr5_1:25163289-25163308 None:intergenic 35.0%
TGAAGAACCAGAAGAAAAAG+AGG - chr5_1:25163318-25163337 Msa0725450:intron 35.0%
! ATAGACTCCTCTTTTTCTTC+TGG + chr5_1:25163328-25163347 None:intergenic 35.0%
! TCAGAATCATCTAGTTCAAG+TGG - chr5_1:25163460-25163479 Msa0725450:intron 35.0%
TTTGCTACCAAGAAACTCAT+AGG + chr5_1:25163527-25163546 None:intergenic 35.0%
! GAGTTTCTTGGTAGCAAAAA+TGG - chr5_1:25163529-25163548 Msa0725450:intron 35.0%
AGAAATGGAACCTCATATGA+AGG - chr5_1:25163678-25163697 Msa0725450:CDS 35.0%
GAAATGGAACCTCATATGAA+GGG - chr5_1:25163679-25163698 Msa0725450:CDS 35.0%
! GTTTTCAAACCCTTCATATG+AGG + chr5_1:25163691-25163710 None:intergenic 35.0%
GAAGTGAAAGAGCAAAAAGA+AGG - chr5_1:25163730-25163749 Msa0725450:CDS 35.0%
AGGTATGAAGAAAAGTGAAG+AGG - chr5_1:25163750-25163769 Msa0725450:CDS 35.0%
! CTGACGAAGATGATTTTGAA+TGG - chr5_1:25163791-25163810 Msa0725450:CDS 35.0%
TTGAAGAATTCAAGACAAGG+AGG - chr5_1:25163850-25163869 Msa0725450:CDS 35.0%
AGAAAAAGAATCACCAAGAG+TGG - chr5_1:25163927-25163946 Msa0725450:CDS 35.0%
AGCTTCACTTCAATCTTCAA+TGG + chr5_1:25163967-25163986 None:intergenic 35.0%
TATCAAACCATGCATGCATT+AGG - chr5_1:25164069-25164088 Msa0725450:intron 35.0%
GTAGATTTGTCACTATCTCT+AGG + chr5_1:25164495-25164514 None:intergenic 35.0%
CCTACAAATCAAGAGTAAAG+TGG + chr5_1:25164753-25164772 None:intergenic 35.0%
!! CCACTTTACTCTTGATTTGT+AGG - chr5_1:25164750-25164769 Msa0725450:CDS 35.0%
! GATTATTCCATTTGAGATGG+TGG + chr5_1:25164823-25164842 None:intergenic 35.0%
ATGACTCACAAAGTTCTCAT+AGG - chr5_1:25165009-25165028 Msa0725450:CDS 35.0%
CTTCATGTTCCAGCTATTAA+AGG - chr5_1:25165161-25165180 Msa0725450:CDS 35.0%
AGCTAAATGACGCATACATT+AGG - chr5_1:25165537-25165556 Msa0725450:CDS 35.0%
GCTAAATGACGCATACATTA+GGG - chr5_1:25165538-25165557 Msa0725450:CDS 35.0%
CCCATATTCTCAATGTGTTA+AGG - chr5_1:25165567-25165586 Msa0725450:CDS 35.0%
TAAGGACTGAGATGAAGATT+TGG - chr5_1:25165585-25165604 Msa0725450:CDS 35.0%
AAAATCAGCATCTCAACTCA+AGG + chr5_1:25165850-25165869 None:intergenic 35.0%
! AAGAATCAATGCGTGTGTTT+TGG - chr5_1:25165953-25165972 Msa0725450:CDS 35.0%
! AGAATCAATGCGTGTGTTTT+GGG - chr5_1:25165954-25165973 Msa0725450:CDS 35.0%
! GCAAGTTGGAACATAAAAAG+TGG + chr5_1:25166123-25166142 None:intergenic 35.0%
CTTAAGGACATAGTAAGAAC+TGG - chr5_1:25166714-25166733 Msa0725450:CDS 35.0%
TCAACTTGATCATGAGCAAT+TGG - chr5_1:25166776-25166795 Msa0725450:five_prime_UTR 35.0%
TGGCAAGAGAAATTAAAAGG+TGG - chr5_1:25167110-25167129 Msa0725450:five_prime_UTR 35.0%
GAAGTTAATACATTCAGGAG+TGG - chr5_1:25167220-25167239 Msa0725450:five_prime_UTR 35.0%
! AGGAGTGGAGTTAGAAATTT+TGG - chr5_1:25167235-25167254 Msa0725450:five_prime_UTR 35.0%
! GTTGTGTTTGACACGTTTTG+AGG + chr5_1:25161558-25161577 None:intergenic 40.0%
! AGGAGAAGATTTTGCACACA+TGG + chr5_1:25161683-25161702 None:intergenic 40.0%
! TGGACTCTTTTTCCAACTTG+TGG + chr5_1:25161763-25161782 None:intergenic 40.0%
!! GTCCACTTTTCCACTATGAA+TGG - chr5_1:25161778-25161797 Msa0725450:three_prime_UTR 40.0%
CTCAGATTCTTCTTGAGGTT+TGG - chr5_1:25162088-25162107 Msa0725450:intron 40.0%
!! AACAGAGTGCTCTGTTTTCT+TGG - chr5_1:25162349-25162368 Msa0725450:intron 40.0%
GGTAAGGAAAATGAAGAGGT+AGG - chr5_1:25162554-25162573 Msa0725450:intron 40.0%
!! GAAGGCTCTGATTTTAAGGA+TGG - chr5_1:25162842-25162861 Msa0725450:CDS 40.0%
GAGTCTAAGCTTCATGAAGA+TGG - chr5_1:25162866-25162885 Msa0725450:intron 40.0%
TCTAAGCTTCATGAAGATGG+AGG - chr5_1:25162869-25162888 Msa0725450:intron 40.0%
!! AACAGAGTACTCTGTTTTCG+TGG - chr5_1:25162895-25162914 Msa0725450:intron 40.0%
GAAGAAACAGAGCAAGAAAC+AGG - chr5_1:25163085-25163104 Msa0725450:intron 40.0%
AGAAACAGAGCAAGAAACAG+GGG - chr5_1:25163087-25163106 Msa0725450:intron 40.0%
!!! AACAGGGGACTCTGTTTTTT+TGG - chr5_1:25163102-25163121 Msa0725450:intron 40.0%
!!! GGACTCTGTTTTTTTGGAGA+GGG - chr5_1:25163108-25163127 Msa0725450:intron 40.0%
CTAGTTCAAGTGGTCTAATC+TGG - chr5_1:25163470-25163489 Msa0725450:intron 40.0%
! ATGGGAGCATGAAGAAATAG+TGG - chr5_1:25163810-25163829 Msa0725450:CDS 40.0%
AGAGCTATGCAGAGAAAATG+AGG - chr5_1:25164028-25164047 Msa0725450:intron 40.0%
!!! CCATTTGAGATGGTGGATTT+TGG + chr5_1:25164816-25164835 None:intergenic 40.0%
CCAAAATCCACCATCTCAAA+TGG - chr5_1:25164813-25164832 Msa0725450:CDS 40.0%
TTGGACAAATTTGCCTCTCA+TGG - chr5_1:25164940-25164959 Msa0725450:CDS 40.0%
TGGACAAATTTGCCTCTCAT+GGG - chr5_1:25164941-25164960 Msa0725450:CDS 40.0%
AACATAGGATTTCCCATGAG+AGG + chr5_1:25164956-25164975 None:intergenic 40.0%
TCTCATGGGAAATCCTATGT+TGG - chr5_1:25164955-25164974 Msa0725450:CDS 40.0%
CTTTCATGTGTAGCCAACAT+AGG + chr5_1:25164971-25164990 None:intergenic 40.0%
CATAGGTATAACCATGTTGC+TGG - chr5_1:25165026-25165045 Msa0725450:CDS 40.0%
GTTGAAATTCACCAGCAACA+TGG + chr5_1:25165040-25165059 None:intergenic 40.0%
ATAGAGAATGAGCCATTCCA+AGG - chr5_1:25165086-25165105 Msa0725450:CDS 40.0%
TAATAGCTGGAACATGAAGC+AGG + chr5_1:25165160-25165179 None:intergenic 40.0%
AAATGACGCATACATTAGGG+TGG - chr5_1:25165541-25165560 Msa0725450:CDS 40.0%
GTTAGTCCATTGTTGCTCTT+AGG - chr5_1:25165642-25165661 Msa0725450:CDS 40.0%
AGATGATAGTAAAGGAGGTG+AGG - chr5_1:25165891-25165910 Msa0725450:CDS 40.0%
CTAGAAGGTTTGCAATTGCA+GGG + chr5_1:25166053-25166072 None:intergenic 40.0%
ACTAGAAGGTTTGCAATTGC+AGG + chr5_1:25166054-25166073 None:intergenic 40.0%
TGCAATTGCAAACCTTCTAG+TGG - chr5_1:25166053-25166072 Msa0725450:CDS 40.0%
GTATTCGAATGTCCACTAGA+AGG + chr5_1:25166068-25166087 None:intergenic 40.0%
CTTGTGCTACATGTTACAGA+AGG - chr5_1:25166683-25166702 Msa0725450:CDS 40.0%
!! CATGATCAAGTTGATCCTCA+TGG + chr5_1:25166770-25166789 None:intergenic 40.0%
AGCAATTGGTTGCTCAAGTT+GGG - chr5_1:25166790-25166809 Msa0725450:five_prime_UTR 40.0%
! TTGGGTTGCGATTGATTTCA+AGG - chr5_1:25166808-25166827 Msa0725450:five_prime_UTR 40.0%
! TGGGTTGCGATTGATTTCAA+GGG - chr5_1:25166809-25166828 Msa0725450:five_prime_UTR 40.0%
GCAAAAAAGAAGGTTCCACA+TGG + chr5_1:25166923-25166942 None:intergenic 40.0%
ACTATGATGTATGAGCAAGG+AGG + chr5_1:25167079-25167098 None:intergenic 40.0%
TCTTGTGTGGCATACAAGTT+TGG - chr5_1:25167141-25167160 Msa0725450:five_prime_UTR 40.0%
CCATCACCAAGTGATTGTGA+TGG + chr5_1:25162245-25162264 None:intergenic 45.0%
! CCATCACAATCACTTGGTGA+TGG - chr5_1:25162242-25162261 Msa0725450:intron 45.0%
! TGTTCAAGAAGATGGCGGTA+AGG - chr5_1:25162538-25162557 Msa0725450:intron 45.0%
TGGCGGTAAGGAAAATGAAG+AGG - chr5_1:25162550-25162569 Msa0725450:intron 45.0%
! GTTTTCGTGGAGAATGTCTC+TGG - chr5_1:25162908-25162927 Msa0725450:intron 45.0%
!! GTCTCTGGTGTTATCGAAGA+TGG - chr5_1:25162923-25162942 Msa0725450:intron 45.0%
!!! GGGACTCTGTTTTTTTGGAG+AGG - chr5_1:25163107-25163126 Msa0725450:intron 45.0%
TGGGAAACGGTTGAAACATC+AGG + chr5_1:25163247-25163266 None:intergenic 45.0%
CTCAAAGCGATGTGGAACAT+CGG + chr5_1:25163359-25163378 None:intergenic 45.0%
GTTCTCACCTAATGCATGCA+TGG + chr5_1:25164079-25164098 None:intergenic 45.0%
GTTGGGTGCGAGATGAATAA+TGG + chr5_1:25164417-25164436 None:intergenic 45.0%
TGATAGTAAAGGAGGTGAGG+AGG - chr5_1:25165894-25165913 Msa0725450:CDS 45.0%
AGGATCCAATTGCAAGTGGA+AGG - chr5_1:25165914-25165933 Msa0725450:CDS 45.0%
TGCAACCTTCCACTTGCAAT+TGG + chr5_1:25165922-25165941 None:intergenic 45.0%
!! GAAGTTCCAAAAGCACCATG+AGG - chr5_1:25166752-25166771 Msa0725450:exon 45.0%
! GTTGATCCTCATGGTGCTTT+TGG + chr5_1:25166761-25166780 None:intergenic 45.0%
GAGCAATTGGTTGCTCAAGT+TGG - chr5_1:25166789-25166808 Msa0725450:five_prime_UTR 45.0%
! GTTGCGATTGATTTCAAGGG+TGG - chr5_1:25166812-25166831 Msa0725450:five_prime_UTR 45.0%
AAGCAGGAAGATTGTCCATG+TGG - chr5_1:25166905-25166924 Msa0725450:five_prime_UTR 45.0%
!!! AAAATAATTTAAAACTAAAT+AGG + chr5_1:25166184-25166203 None:intergenic 5.0%
GAGAATGAGCCATTCCAAGG+TGG - chr5_1:25165089-25165108 Msa0725450:CDS 50.0%
ATCCTTGGTCCACCTTGGAA+TGG + chr5_1:25165101-25165120 None:intergenic 50.0%
TCTGAATCCTTGGTCCACCT+TGG + chr5_1:25165106-25165125 None:intergenic 50.0%
TGACGCATACATTAGGGTGG+TGG - chr5_1:25165544-25165563 Msa0725450:CDS 50.0%
GAGGAGGATCCAATTGCAAG+TGG - chr5_1:25165910-25165929 Msa0725450:CDS 50.0%
GGTGGTGCAATGTTCTTGTG+TGG - chr5_1:25167128-25167147 Msa0725450:five_prime_UTR 50.0%
GTGTGGCATACAAGTTTGGC+TGG - chr5_1:25167145-25167164 Msa0725450:five_prime_UTR 50.0%
!! TCCACATCGCTTTGAGAGCG+AGG - chr5_1:25163363-25163382 Msa0725450:intron 55.0%
! TTTGAGAGCGAGGCGTTTGG+TGG - chr5_1:25163373-25163392 Msa0725450:intron 55.0%
AGCCATTCCAAGGTGGACCA+AGG - chr5_1:25165096-25165115 Msa0725450:CDS 55.0%
GGGGAGCCTAAGAGCAACAA+TGG + chr5_1:25165651-25165670 None:intergenic 55.0%
CTGTCACGTGCTAGAGTTGC+CGG + chr5_1:25166404-25166423 None:intergenic 55.0%
GCCTCGCTCTCAAAGCGATG+TGG + chr5_1:25163367-25163386 None:intergenic 60.0%
!! CGCTTTGAGAGCGAGGCGTT+TGG - chr5_1:25163370-25163389 Msa0725450:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 25161483 25167288 25161483 ID=Msa0725450;Name=Msa0725450
chr5_1 mRNA 25161483 25167288 25161483 ID=Msa0725450-mRNA-1;Parent=Msa0725450;Name=Msa0725450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=536|1|1|1|1|1|5|332|949
chr5_1 exon 25161483 25162069 25161483 ID=Msa0725450-mRNA-1:exon:9116;Parent=Msa0725450-mRNA-1
chr5_1 exon 25162673 25162878 25162673 ID=Msa0725450-mRNA-1:exon:9115;Parent=Msa0725450-mRNA-1
chr5_1 exon 25163589 25163999 25163589 ID=Msa0725450-mRNA-1:exon:9114;Parent=Msa0725450-mRNA-1
chr5_1 exon 25164681 25166572 25164681 ID=Msa0725450-mRNA-1:exon:9113;Parent=Msa0725450-mRNA-1
chr5_1 exon 25166667 25167288 25166667 ID=Msa0725450-mRNA-1:exon:9112;Parent=Msa0725450-mRNA-1
chr5_1 five_prime_UTR 25166753 25167288 25166753 ID=Msa0725450-mRNA-1:five_prime_utr;Parent=Msa0725450-mRNA-1
chr5_1 CDS 25166667 25166752 25166667 ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1 CDS 25164681 25166572 25164681 ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1 CDS 25163589 25163999 25163589 ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1 CDS 25162673 25162878 25162673 ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1 CDS 25161815 25162069 25161815 ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1 three_prime_UTR 25161483 25161814 25161483 ID=Msa0725450-mRNA-1:three_prime_utr;Parent=Msa0725450-mRNA-1
Gene Sequence

>Msa0725450

ATGTCTTTGAATTTTGTTTCTGTGAGGGTTTTGATCAGCAATTATGTGTTCTATTCATTTGGATTCATACTCAGATTCTTCTTGAGGTTTCTTAAATTAGGAGATGCCAAAAAAGATCTCATTAATTCACCATCACAATCACTTGGTGATGGAAATTTTCATGATTTCAAGGTTGATGGTTTTGCAGAAGAGTTGTCTAATTTCCTTTTTTGGAGTGATGATTTTCATCAAAGAGAAACAGAGTGCTCTGTTTTCTTGGATTCTGTTCATGAAGAAAAAACAGAGTTCTCTGTTTTGAAGGAAATTCACAATGATTTTCATGAAGATAGTGTCAAAACAGAGATATACGTGGAGAGTATTTTATCAAAGGTGGTTGAGTGTGAAATACATGAAGAGGGTATTGATAAAGAAAAAGAAGATGAATTTGTTCAAGAAGATGGCGGTAAGGAAAATGAAGAGGTAGGTGAAAGGTTTGTTTCCATTGAGAATCATCCAACTGTTCATGAAATTGAAATGAAGAGTTTTGTTTGCTTGGAAAATGGTAATGATCTATGTCATGATAATATGAAGATAGAAGAGAAAGAAGAAGAAATAATAGAGCATGTCATAGTGGAGAATAACTCTAATGTTCATGAAGAAGGAGGAAAATTTGATGGAATTGAAACAGAGTACTCTGTTTTCAATGAGAATGTAAATGAAGATGGTATGAAAAAAGATGAAAAGGAAATGGAAGGCTCTGATTTTAAGGATGGTGAGTCTAAGCTTCATGAAGATGGAGGTGTAACAGAGTACTCTGTTTTCGTGGAGAATGTCTCTGGTGTTATCGAAGATGGTAAGAAAATAGTTGAAAAGGATACAGAGGAATCTTCATTCAAGGATGATGAGTCTAATCTTGATGAAGCTAGGAAGAAAATAGGTGAAATTGAAACAAATATCACAGTTTTCGGTAAGGACGATGATAATAAAATAGAAGAAGAAACAGAGCAAGAAACAGGGGACTCTGTTTTTTTGGAGAGGGACACGATAAAAACAACCACTAGTAGGTATGAATACTTCTCAGAAAAAGATATAAGTTGCTTTGTGGAAGAACCAACAACATTGCGATTCAGTTTTCGAGAATATTACATGAGTCCTGATGTTTCAACCGTTTCCCAAAATGCATACAAAGAGTTTCCAAAGCTTGATTCAGAGAAAGACATTGTAACTGAAGAACCAGAAGAAAAAGAGGAGTCTATTCATTCAACCGATGTTCCACATCGCTTTGAGAGCGAGGCGTTTGGTGGAACTGATTCATCTGATGAAGATTATTTCATTTTCAATGAAAACTCAGTGACATCTGATTCTGAGTCAGAATCATCTAGTTCAAGTGGTCTAATCTGGAGCAACAGCAACAAAATTGATGATTCATTTTCCTATGAGTTTCTTGGTAGCAAAAATGGTAGTGAAATTCTAAAGTTGATGATGAGAGATGAAACAATAGAAGATTTGGATGAAAACCAATCTTTATTTGATGATAAAGTTTCAAAATTTGGAGTTGATGAGGTTTATTCTGAAAATGAGTATATAGAAATGGAACCTCATATGAAGGGTTTGAAAACCTTTGAAGAACATGGTTTTGAAGTGAAAGAGCAAAAAGAAGGTATGAAGAAAAGTGAAGAGGAATTGAATGGATCAGAATCTGACGAAGATGATTTTGAATGGGAGCATGAAGAAATAGTGGAACAATTGAAGCTAGAATTGAAGAATTCAAGACAAGGAGGACTTGCAACAATCATAGAAGAAGTTGAAGATGAAGAAGAAGAACAAGAACAAGAAGAAAAAGAATCACCAAGAGTGGTTGAAGAATTAAAACCATTGAAGATTGAAGTGAAGCTAGAATTCAATGATCAAATGGATCAAATTGAGAAAGTTTACAAGAGCTATGCAGAGAAAATGAGGAAACTTGATATCTTGAATTATCAAACCATGCATGCATTAGGTCTTCTTCAACTAAAAGACCCTCTTAAATTAATTTCAATACCAAAATCCACCATCTCAAATGGAATAATCTCTCAAAATTTGTGGCCAAGAAAATCAACAAAGATCACATCTGACCCATTTTTAAAACTTGTTCATCAACTTCATATAGATTTGGAATTGGTATATGTTGGACAAATTTGCCTCTCATGGGAAATCCTATGTTGGCTACACATGAAAGCTATTGAGTTACAACAATATGACTCACAAAGTTCTCATAGGTATAACCATGTTGCTGGTGAATTTCAACTTTTTCAAGTATTGATGCAAAGGTTCATAGAGAATGAGCCATTCCAAGGTGGACCAAGGATTCAGAATTATGTAAAGAATCGTTGTGTGATTAGGAACCTGCTTCATGTTCCAGCTATTAAAGATGATAGTAAAGGAGGTGAGGAGGATCCAATTGCAAGTGGAAGGTTGCAAGATATCATCAAAGAATCAATGCGTGTGTTTTGGGAATTTGTTCGAACAGATAAAGAAAATGGGAATGTGAATGTGATTTCTAAGCAAATTGGAAGTGATCTCAAAGACCCTGCAATTGCAAACCTTCTAGTGGACATTCGAATACAACTACAAAAGAAGGATAAAAAGCTTAAGGACATAGTAAGAACTGGAAATTGCATAGTGAAGAAGTTCCAAAAGCACCATGAGGATCAACTTGATCATGAGCAATTGGTTGCTCAAGTTGGGTTGCGATTGATTTCAAGGGTGGTAAACATGTCACAATTGAGAAAAGAACAAGTACTATGGTGTAGTGAAAAGTTGAACCGAATCAAATTTTTAAGCAGGAAGATTGTCCATGTGGAACCTTCTTTTTTGCTTTTTCCATGTTGA
Protein sequence

>Msa0725450

MSLNFVSVRVLISNYVFYSFGFILRFFLRFLKLGDAKKDLINSPSQSLGDGNFHDFKVDGFAEELSNFLFWSDDFHQRETECSVFLDSVHEEKTEFSVLKEIHNDFHEDSVKTEIYVESILSKVVECEIHEEGIDKEKEDEFVQEDGGKENEEVGERFVSIENHPTVHEIEMKSFVCLENGNDLCHDNMKIEEKEEEIIEHVIVENNSNVHEEGGKFDGIETEYSVFNENVNEDGMKKDEKEMEGSDFKDGESKLHEDGGVTEYSVFVENVSGVIEDGKKIVEKDTEESSFKDDESNLDEARKKIGEIETNITVFGKDDDNKIEEETEQETGDSVFLERDTIKTTTSRYEYFSEKDISCFVEEPTTLRFSFREYYMSPDVSTVSQNAYKEFPKLDSEKDIVTEEPEEKEESIHSTDVPHRFESEAFGGTDSSDEDYFIFNENSVTSDSESESSSSSGLIWSNSNKIDDSFSYEFLGSKNGSEILKLMMRDETIEDLDENQSLFDDKVSKFGVDEVYSENEYIEMEPHMKGLKTFEEHGFEVKEQKEGMKKSEEELNGSESDEDDFEWEHEEIVEQLKLELKNSRQGGLATIIEEVEDEEEEQEQEEKESPRVVEELKPLKIEVKLEFNDQMDQIEKVYKSYAEKMRKLDILNYQTMHALGLLQLKDPLKLISIPKSTISNGIISQNLWPRKSTKITSDPFLKLVHQLHIDLELVYVGQICLSWEILCWLHMKAIELQQYDSQSSHRYNHVAGEFQLFQVLMQRFIENEPFQGGPRIQNYVKNRCVIRNLLHVPAIKDDSKGGEEDPIASGRLQDIIKESMRVFWEFVRTDKENGNVNVISKQIGSDLKDPAIANLLVDIRIQLQKKDKKLKDIVRTGNCIVKKFQKHHEDQLDHEQLVAQVGLRLISRVVNMSQLRKEQVLWCSEKLNRIKFLSRKIVHVEPSFLLFPC*