AlfalfaGEDB | Msa0725450

M. sativa cultivar zhongmu-4 / Msa0725450

KEGG: -
GO: -
PFAM: PF07891.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725450	XP_003613763.2	88.947	950	63	3	1	949	1	909	0.0	1550

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725450	G7KF75	88.947	950	63	3	1	949	1	909	0.0	1550

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005270	Msa0725450	0.804943	1.694390e-49	-8.615850e-47
Msa0006270	Msa0725450	0.800527	1.382127e-48	-8.615850e-47
Msa0026450	Msa0725450	0.813840	2.087452e-51	-8.615850e-47
Msa0029850	Msa0725450	0.812723	3.673481e-51	-8.615850e-47
Msa0042550	Msa0725450	0.817322	3.502678e-52	-8.615850e-47
Msa0044260	Msa0725450	0.814354	1.608239e-51	-8.615850e-47
Msa0077180	Msa0725450	0.819409	1.179145e-52	-8.615850e-47
Msa0093520	Msa0725450	0.804755	1.854818e-49	-8.615850e-47
Msa0104800	Msa0725450	0.804588	2.009985e-49	-8.615850e-47
Msa0145260	Msa0725450	0.814787	1.289365e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725450	MtrunA17_Chr5g0417111	88.947	950	63	3	1	949	1	909	0.0	1550
Msa0725450	MtrunA17_Chr8g0361681	60.051	393	134	7	572	949	452	836	1.79e-142	445
Msa0725450	MtrunA17_Chr7g0217181	43.451	481	224	14	490	948	290	744	2.12e-110	357
Msa0725450	MtrunA17_Chr8g0361691	55.621	169	65	3	700	859	1	168	4.02e-47	166
Msa0725450	MtrunA17_Chr4g0000281	30.508	413	221	14	561	949	55	425	9.38e-34	135
Msa0725450	MtrunA17_Chr8g0391071	31.274	259	151	7	705	948	315	561	2.36e-23	105
Msa0725450	MtrunA17_Chr6g0484451	29.956	227	138	7	637	856	305	517	6.63e-13	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0725450	AT5G39785.1	41.505	412	200	12	567	949	207	606	3.60e-97	318
Msa0725450	AT5G39785.3	41.505	412	200	12	567	949	207	606	3.60e-97	318
Msa0725450	AT5G39785.5	41.505	412	200	12	567	949	207	606	3.60e-97	318
Msa0725450	AT5G39785.2	41.162	413	201	13	567	949	207	607	1.20e-94	311
Msa0725450	AT5G39785.4	39.130	437	200	13	567	949	207	631	1.12e-91	305
Msa0725450	AT1G69610.3	45.729	398	177	11	568	949	218	592	3.36e-90	299
Msa0725450	AT1G69610.2	45.729	398	177	11	568	949	263	637	1.67e-89	299
Msa0725450	AT1G69610.1	45.729	398	177	11	568	949	262	636	1.96e-89	298
Msa0725450	AT3G20260.1	29.341	334	196	10	637	949	123	437	1.71e-30	126
Msa0725450	AT1G73850.2	28.402	338	195	10	637	948	317	633	1.53e-25	113

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Find 157 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATAAGTTGCTTTG+TGG	0.399117	5_1:-25165575	Msa0725450:CDS
AAAAGTGAAGAGGAATTGAA+TGG	0.487614	5_1:-25164989	Msa0725450:CDS
AAAATCTTCTCCTACAATCT+CGG	0.520935	5_1:-25167059	Msa0725450:five_prime_UTR
AAAATGAAGAGGTAGGTGAA+AGG	0.619923	5_1:-25166188	Msa0725450:CDS
AAACTGAATCGCAATGTTGT+TGG	0.431487	5_1:+25165547	None:intergenic
AAAGATCTTATTCCACAAGT+TGG	0.415099	5_1:-25167001	Msa0725450:five_prime_UTR
AAAGATGAAAAGGAAATGGA+AGG	0.586804	5_1:-25165925	Msa0725450:CDS
AAATAGGTAAACTGCCTAAT+GGG	0.398325	5_1:-25167250	Msa0725450:five_prime_UTR
AAATGGCAAGAGAAATTAAA+AGG	0.345455	5_1:-25161642	Msa0725450:three_prime_UTR
AACAGTTGGATGATTCTCAA+TGG	0.513251	5_1:+25166158	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCCAAGTTAAGTGAACAAAT+AGG	-	chr5_1:25161483-25161502	Msa0725450:three_prime_UTR	30.0%
ACCTATTTGTTCACTTAACT+TGG	+	chr5_1:25161487-25161506	None:intergenic	30.0%
AAATAGGTAAACTGCCTAAT+GGG	-	chr5_1:25161499-25161518	Msa0725450:three_prime_UTR	30.0%
AAAATCTTCTCCTACAATCT+CGG	-	chr5_1:25161690-25161709	Msa0725450:three_prime_UTR	30.0%
AAAGATCTTATTCCACAAGT+TGG	-	chr5_1:25161748-25161767	Msa0725450:three_prime_UTR	30.0%
ATCAAATCAACCATTCATAG+TGG	+	chr5_1:25161791-25161810	None:intergenic	30.0%
TTAGAGTATGGAGAAGAAAT+GGG	+	chr5_1:25161840-25161859	None:intergenic	30.0%
AGTTTGGTTGGATTTGATTA+TGG	-	chr5_1:25161908-25161927	Msa0725450:CDS	30.0%
TGCTTAAGAAAACTCTACAT+TGG	-	chr5_1:25161950-25161969	Msa0725450:CDS	30.0%
TTTCATGATTTCAAGGTTGA+TGG	-	chr5_1:25162269-25162288	Msa0725450:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	25161483	25167288	25161483	ID=Msa0725450;Name=Msa0725450
chr5_1	mRNA	25161483	25167288	25161483	ID=Msa0725450-mRNA-1;Parent=Msa0725450;Name=Msa0725450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=536\|1\|1\|1\|1\|1\|5\|332\|949
chr5_1	exon	25161483	25162069	25161483	ID=Msa0725450-mRNA-1:exon:9116;Parent=Msa0725450-mRNA-1
chr5_1	exon	25162673	25162878	25162673	ID=Msa0725450-mRNA-1:exon:9115;Parent=Msa0725450-mRNA-1
chr5_1	exon	25163589	25163999	25163589	ID=Msa0725450-mRNA-1:exon:9114;Parent=Msa0725450-mRNA-1
chr5_1	exon	25164681	25166572	25164681	ID=Msa0725450-mRNA-1:exon:9113;Parent=Msa0725450-mRNA-1
chr5_1	exon	25166667	25167288	25166667	ID=Msa0725450-mRNA-1:exon:9112;Parent=Msa0725450-mRNA-1
chr5_1	five_prime_UTR	25166753	25167288	25166753	ID=Msa0725450-mRNA-1:five_prime_utr;Parent=Msa0725450-mRNA-1
chr5_1	CDS	25166667	25166752	25166667	ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1	CDS	25164681	25166572	25164681	ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1	CDS	25163589	25163999	25163589	ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1	CDS	25162673	25162878	25162673	ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1	CDS	25161815	25162069	25161815	ID=Msa0725450-mRNA-1:cds;Parent=Msa0725450-mRNA-1
chr5_1	three_prime_UTR	25161483	25161814	25161483	ID=Msa0725450-mRNA-1:three_prime_utr;Parent=Msa0725450-mRNA-1

Gene Sequence

>Msa0725450

ATGTCTTTGAATTTTGTTTCTGTGAGGGTTTTGATCAGCAATTATGTGTTCTATTCATTTGGATTCATACTCAGATTCTTCTTGAGGTTTCTTAAATTAGGAGATGCCAAAAAAGATCTCATTAATTCACCATCACAATCACTTGGTGATGGAAATTTTCATGATTTCAAGGTTGATGGTTTTGCAGAAGAGTTGTCTAATTTCCTTTTTTGGAGTGATGATTTTCATCAAAGAGAAACAGAGTGCTCTGTTTTCTTGGATTCTGTTCATGAAGAAAAAACAGAGTTCTCTGTTTTGAAGGAAATTCACAATGATTTTCATGAAGATAGTGTCAAAACAGAGATATACGTGGAGAGTATTTTATCAAAGGTGGTTGAGTGTGAAATACATGAAGAGGGTATTGATAAAGAAAAAGAAGATGAATTTGTTCAAGAAGATGGCGGTAAGGAAAATGAAGAGGTAGGTGAAAGGTTTGTTTCCATTGAGAATCATCCAACTGTTCATGAAATTGAAATGAAGAGTTTTGTTTGCTTGGAAAATGGTAATGATCTATGTCATGATAATATGAAGATAGAAGAGAAAGAAGAAGAAATAATAGAGCATGTCATAGTGGAGAATAACTCTAATGTTCATGAAGAAGGAGGAAAATTTGATGGAATTGAAACAGAGTACTCTGTTTTCAATGAGAATGTAAATGAAGATGGTATGAAAAAAGATGAAAAGGAAATGGAAGGCTCTGATTTTAAGGATGGTGAGTCTAAGCTTCATGAAGATGGAGGTGTAACAGAGTACTCTGTTTTCGTGGAGAATGTCTCTGGTGTTATCGAAGATGGTAAGAAAATAGTTGAAAAGGATACAGAGGAATCTTCATTCAAGGATGATGAGTCTAATCTTGATGAAGCTAGGAAGAAAATAGGTGAAATTGAAACAAATATCACAGTTTTCGGTAAGGACGATGATAATAAAATAGAAGAAGAAACAGAGCAAGAAACAGGGGACTCTGTTTTTTTGGAGAGGGACACGATAAAAACAACCACTAGTAGGTATGAATACTTCTCAGAAAAAGATATAAGTTGCTTTGTGGAAGAACCAACAACATTGCGATTCAGTTTTCGAGAATATTACATGAGTCCTGATGTTTCAACCGTTTCCCAAAATGCATACAAAGAGTTTCCAAAGCTTGATTCAGAGAAAGACATTGTAACTGAAGAACCAGAAGAAAAAGAGGAGTCTATTCATTCAACCGATGTTCCACATCGCTTTGAGAGCGAGGCGTTTGGTGGAACTGATTCATCTGATGAAGATTATTTCATTTTCAATGAAAACTCAGTGACATCTGATTCTGAGTCAGAATCATCTAGTTCAAGTGGTCTAATCTGGAGCAACAGCAACAAAATTGATGATTCATTTTCCTATGAGTTTCTTGGTAGCAAAAATGGTAGTGAAATTCTAAAGTTGATGATGAGAGATGAAACAATAGAAGATTTGGATGAAAACCAATCTTTATTTGATGATAAAGTTTCAAAATTTGGAGTTGATGAGGTTTATTCTGAAAATGAGTATATAGAAATGGAACCTCATATGAAGGGTTTGAAAACCTTTGAAGAACATGGTTTTGAAGTGAAAGAGCAAAAAGAAGGTATGAAGAAAAGTGAAGAGGAATTGAATGGATCAGAATCTGACGAAGATGATTTTGAATGGGAGCATGAAGAAATAGTGGAACAATTGAAGCTAGAATTGAAGAATTCAAGACAAGGAGGACTTGCAACAATCATAGAAGAAGTTGAAGATGAAGAAGAAGAACAAGAACAAGAAGAAAAAGAATCACCAAGAGTGGTTGAAGAATTAAAACCATTGAAGATTGAAGTGAAGCTAGAATTCAATGATCAAATGGATCAAATTGAGAAAGTTTACAAGAGCTATGCAGAGAAAATGAGGAAACTTGATATCTTGAATTATCAAACCATGCATGCATTAGGTCTTCTTCAACTAAAAGACCCTCTTAAATTAATTTCAATACCAAAATCCACCATCTCAAATGGAATAATCTCTCAAAATTTGTGGCCAAGAAAATCAACAAAGATCACATCTGACCCATTTTTAAAACTTGTTCATCAACTTCATATAGATTTGGAATTGGTATATGTTGGACAAATTTGCCTCTCATGGGAAATCCTATGTTGGCTACACATGAAAGCTATTGAGTTACAACAATATGACTCACAAAGTTCTCATAGGTATAACCATGTTGCTGGTGAATTTCAACTTTTTCAAGTATTGATGCAAAGGTTCATAGAGAATGAGCCATTCCAAGGTGGACCAAGGATTCAGAATTATGTAAAGAATCGTTGTGTGATTAGGAACCTGCTTCATGTTCCAGCTATTAAAGATGATAGTAAAGGAGGTGAGGAGGATCCAATTGCAAGTGGAAGGTTGCAAGATATCATCAAAGAATCAATGCGTGTGTTTTGGGAATTTGTTCGAACAGATAAAGAAAATGGGAATGTGAATGTGATTTCTAAGCAAATTGGAAGTGATCTCAAAGACCCTGCAATTGCAAACCTTCTAGTGGACATTCGAATACAACTACAAAAGAAGGATAAAAAGCTTAAGGACATAGTAAGAACTGGAAATTGCATAGTGAAGAAGTTCCAAAAGCACCATGAGGATCAACTTGATCATGAGCAATTGGTTGCTCAAGTTGGGTTGCGATTGATTTCAAGGGTGGTAAACATGTCACAATTGAGAAAAGAACAAGTACTATGGTGTAGTGAAAAGTTGAACCGAATCAAATTTTTAAGCAGGAAGATTGTCCATGTGGAACCTTCTTTTTTGCTTTTTCCATGTTGA

Protein sequence

>Msa0725450

MSLNFVSVRVLISNYVFYSFGFILRFFLRFLKLGDAKKDLINSPSQSLGDGNFHDFKVDGFAEELSNFLFWSDDFHQRETECSVFLDSVHEEKTEFSVLKEIHNDFHEDSVKTEIYVESILSKVVECEIHEEGIDKEKEDEFVQEDGGKENEEVGERFVSIENHPTVHEIEMKSFVCLENGNDLCHDNMKIEEKEEEIIEHVIVENNSNVHEEGGKFDGIETEYSVFNENVNEDGMKKDEKEMEGSDFKDGESKLHEDGGVTEYSVFVENVSGVIEDGKKIVEKDTEESSFKDDESNLDEARKKIGEIETNITVFGKDDDNKIEEETEQETGDSVFLERDTIKTTTSRYEYFSEKDISCFVEEPTTLRFSFREYYMSPDVSTVSQNAYKEFPKLDSEKDIVTEEPEEKEESIHSTDVPHRFESEAFGGTDSSDEDYFIFNENSVTSDSESESSSSSGLIWSNSNKIDDSFSYEFLGSKNGSEILKLMMRDETIEDLDENQSLFDDKVSKFGVDEVYSENEYIEMEPHMKGLKTFEEHGFEVKEQKEGMKKSEEELNGSESDEDDFEWEHEEIVEQLKLELKNSRQGGLATIIEEVEDEEEEQEQEEKESPRVVEELKPLKIEVKLEFNDQMDQIEKVYKSYAEKMRKLDILNYQTMHALGLLQLKDPLKLISIPKSTISNGIISQNLWPRKSTKITSDPFLKLVHQLHIDLELVYVGQICLSWEILCWLHMKAIELQQYDSQSSHRYNHVAGEFQLFQVLMQRFIENEPFQGGPRIQNYVKNRCVIRNLLHVPAIKDDSKGGEEDPIASGRLQDIIKESMRVFWEFVRTDKENGNVNVISKQIGSDLKDPAIANLLVDIRIQLQKKDKKLKDIVRTGNCIVKKFQKHHEDQLDHEQLVAQVGLRLISRVVNMSQLRKEQVLWCSEKLNRIKFLSRKIVHVEPSFLLFPC*