Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007790 | XP_013465733.1 | 84.926 | 272 | 17 | 2 | 1 | 248 | 1 | 272 | 2.24e-164 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007790 | sp|Q9ZQ19|RFA2A_ARATH | 41.727 | 278 | 127 | 6 | 1 | 246 | 1 | 275 | 4.37e-66 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007790 | Msa0007800 | 0.895091 | 1.331769e-75 | -8.615850e-47 |
| Msa0007790 | Msa0098410 | 0.804524 | 2.072666e-49 | -8.615850e-47 |
| Msa0007790 | Msa0412130 | 0.807545 | 4.798264e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007790 | MtrunA17_Chr1g0148131 | 84.926 | 272 | 17 | 2 | 1 | 248 | 1 | 272 | 2.06e-168 | 465 |
| Msa0007790 | MtrunA17_Chr4g0072301 | 35.165 | 273 | 145 | 7 | 6 | 248 | 5 | 275 | 1.14e-48 | 161 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007790 | AT2G24490.1 | 41.727 | 278 | 127 | 6 | 1 | 246 | 1 | 275 | 4.44e-67 | 209 |
| Msa0007790 | AT2G24490.2 | 41.727 | 278 | 127 | 6 | 1 | 246 | 1 | 275 | 4.44e-67 | 209 |
| Msa0007790 | AT3G02920.1 | 37.226 | 274 | 132 | 8 | 7 | 246 | 6 | 273 | 5.41e-49 | 162 |
| Msa0007790 | AT3G02920.3 | 37.333 | 225 | 103 | 7 | 7 | 199 | 6 | 224 | 1.29e-36 | 129 |
| Msa0007790 | AT3G02920.2 | 37.333 | 225 | 103 | 7 | 7 | 199 | 6 | 224 | 1.29e-36 | 129 |
Find 71 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCGTTAATTGAGAAAT+TGG | 0.204082 | 1_1:+11125988 | None:intergenic |
| ACTCAAGGATATTGATAAAT+TGG | 0.302020 | 1_1:-11122190 | Msa0007790:CDS |
| ATATTGATGTTGGTCTGTTT+TGG | 0.322076 | 1_1:-11121410 | Msa0007790:three_prime_UTR |
| CTTATCTGCTTCACCGTAAC+CGG | 0.334990 | 1_1:+11126040 | None:intergenic |
| ATAAGTGAAGCTTCTCATTC+TGG | 0.354608 | 1_1:-11126022 | Msa0007790:CDS |
| TCAATATCACCGGTGGTTCT+TGG | 0.355850 | 1_1:+11121426 | None:intergenic |
| GTTGAAGAGTCGTGATTCTC+AGG | 0.358292 | 1_1:-11126071 | Msa0007790:intron |
| TGATTCTCAGGGTTTGATTC+CGG | 0.362961 | 1_1:-11126059 | Msa0007790:CDS |
| TCAGGGTTTGATTCCGGTTA+CGG | 0.363797 | 1_1:-11126053 | Msa0007790:CDS |
| GTCGCTGAAGGCTACTTTAG+AGG | 0.369019 | 1_1:-11121535 | Msa0007790:CDS |
| AAGTCCAATTTCTCAATTAA+CGG | 0.371450 | 1_1:-11125992 | Msa0007790:CDS |
| TTTAGTCAAAAGACATAATA+CGG | 0.379640 | 1_1:+11121298 | None:intergenic |
| GGCGTTGGAGGCATCGAATT+GGG | 0.412602 | 1_1:+11126241 | None:intergenic |
| AGGCGTTGGAGGCATCGAAT+TGG | 0.421359 | 1_1:+11126240 | None:intergenic |
| TTGGTTCAGGTTACATTGGT+TGG | 0.431208 | 1_1:-11125153 | Msa0007790:intron |
| CCTGTCAGAAATGTTTCAAA+TGG | 0.445690 | 1_1:-11122334 | Msa0007790:CDS |
| TGCAGTCGATAAAGTGAAAC+GGG | 0.449660 | 1_1:+11122659 | None:intergenic |
| CCTTTAGTTTGCTGCGGAGG+TGG | 0.453665 | 1_1:+11122629 | None:intergenic |
| TTTGTCTTGGATGATGGAAC+TGG | 0.456132 | 1_1:-11125090 | Msa0007790:CDS |
| GATGCCTCCAACGCCTTCTC+CGG | 0.468351 | 1_1:-11126233 | Msa0007790:CDS |
| TCCAACGCCTTCTCCGGCGG+CGG | 0.469400 | 1_1:-11126227 | Msa0007790:CDS |
| AAATGTTTCAAATGGATCTC+AGG | 0.471853 | 1_1:-11122326 | Msa0007790:CDS |
| AATGCTGCTGCAGATAGTTA+AGG | 0.473253 | 1_1:+11122166 | None:intergenic |
| CCATTTGAAACATTTCTGAC+AGG | 0.490871 | 1_1:+11122334 | None:intergenic |
| TCAGGTTACATTGGTTGGAA+TGG | 0.491482 | 1_1:-11125148 | Msa0007790:intron |
| TTCATAGACGAGTTTGATGA+AGG | 0.492894 | 1_1:+11122361 | None:intergenic |
| AAAGAATATAGCTGAGGATC+GGG | 0.495302 | 1_1:-11121449 | Msa0007790:three_prime_UTR |
| TTTGTAGTGGGAATCATCTA+TGG | 0.496308 | 1_1:+11121494 | None:intergenic |
| AAGATAGCGCTTACTTTAGT+CGG | 0.498495 | 1_1:+11126167 | None:intergenic |
| CCTGCAGAAAGTACCATCTT+CGG | 0.499168 | 1_1:+11125055 | None:intergenic |
| CATGAATCCGCCGCCGGAGA+AGG | 0.506036 | 1_1:+11126220 | None:intergenic |
| TCAGGCACCATCATCAAATC+CGG | 0.520388 | 1_1:-11122308 | Msa0007790:intron |
| TGGAATGGTGTATGAGAAAG+TGG | 0.525821 | 1_1:-11125133 | Msa0007790:CDS |
| GGAGGCATCGAATTGGGAGT+TGG | 0.527700 | 1_1:+11126247 | None:intergenic |
| GCCGCCGGAGAAGGCGTTGG+AGG | 0.529754 | 1_1:+11126229 | None:intergenic |
| CCACCTCCGCAGCAAACTAA+AGG | 0.530775 | 1_1:-11122629 | Msa0007790:intron |
| TAAAGAATATAGCTGAGGAT+CGG | 0.539485 | 1_1:-11121450 | Msa0007790:three_prime_UTR |
| GCGCTTACTTTAGTCGGTGC+CGG | 0.541742 | 1_1:+11126173 | None:intergenic |
| TATCATACCGGATTTGATGA+TGG | 0.544661 | 1_1:+11122301 | None:intergenic |
| AATATCAAGCAAGTTTGTAG+TGG | 0.546197 | 1_1:+11121481 | None:intergenic |
| ATGCAGTCGATAAAGTGAAA+CGG | 0.549087 | 1_1:+11122658 | None:intergenic |
| GGCTACTTTAGAGGACGGTA+CGG | 0.549974 | 1_1:-11121526 | Msa0007790:CDS |
| TTGAAGAGTCGTGATTCTCA+GGG | 0.553382 | 1_1:-11126070 | Msa0007790:intron |
| AGGATCGGGCCAAGAACCAC+CGG | 0.556128 | 1_1:-11121435 | Msa0007790:three_prime_UTR |
| ATCTCATCAAAATTTGTCAC+GGG | 0.561995 | 1_1:+11122682 | None:intergenic |
| TAATGCCAGGTTGTCGCTGA+AGG | 0.562273 | 1_1:-11121547 | Msa0007790:intron |
| CGGTGCCGGAGAAGAATCGT+TGG | 0.563089 | 1_1:+11126187 | None:intergenic |
| GACGGATCAAATGCCGAAGA+TGG | 0.564541 | 1_1:-11125068 | Msa0007790:intron |
| GTGAGATCATTTAAAGTGCT+CGG | 0.567408 | 1_1:+11121272 | None:intergenic |
| TCCGCCGCCGGAGAAGGCGT+TGG | 0.569147 | 1_1:+11126226 | None:intergenic |
| ACTCACATGATCTTGTCCAC+TGG | 0.569272 | 1_1:+11121654 | None:intergenic |
| ACAATATAGCACTGGACTCA+AGG | 0.571343 | 1_1:-11122205 | Msa0007790:CDS |
| AGAAGAATCGTTGGGTTGCG+AGG | 0.573054 | 1_1:+11126196 | None:intergenic |
| GATCTCATCAAAATTTGTCA+CGG | 0.573664 | 1_1:+11122681 | None:intergenic |
| ATATCAAGCAAGTTTGTAGT+GGG | 0.579740 | 1_1:+11121482 | None:intergenic |
| TTACCTTTAGTTTGCTGCGG+AGG | 0.584007 | 1_1:+11122626 | None:intergenic |
| CGAGGACATGAATCCGCCGC+CGG | 0.585196 | 1_1:+11126214 | None:intergenic |
| GCCTCCAACGCCTTCTCCGG+CGG | 0.589648 | 1_1:-11126230 | Msa0007790:CDS |
| GGTGCCGGAGAAGAATCGTT+GGG | 0.594405 | 1_1:+11126188 | None:intergenic |
| GCAACCCAACGATTCTTCTC+CGG | 0.596159 | 1_1:-11126192 | Msa0007790:CDS |
| TGTTTACCTTTAGTTTGCTG+CGG | 0.607394 | 1_1:+11122623 | None:intergenic |
| ACCACCGGTGATATTGATGT+TGG | 0.608508 | 1_1:-11121420 | Msa0007790:three_prime_UTR |
| GGATATGTACAATATAGCAC+TGG | 0.620917 | 1_1:-11122213 | Msa0007790:CDS |
| CAGACCAACATCAATATCAC+CGG | 0.630232 | 1_1:+11121416 | None:intergenic |
| GTAGTGGGAATCATCTATGG+TGG | 0.656595 | 1_1:+11121497 | None:intergenic |
| TGGTGTATGAGAAAGTGGAG+AGG | 0.659213 | 1_1:-11125128 | Msa0007790:CDS |
| CTGAAGGCTACTTTAGAGGA+CGG | 0.662582 | 1_1:-11121531 | Msa0007790:CDS |
| AAGAGAGCTCAAGCTTCCAG+TGG | 0.665972 | 1_1:-11121670 | Msa0007790:CDS |
| TCATCTAAAGAATATAGCTG+AGG | 0.685865 | 1_1:-11121455 | Msa0007790:three_prime_UTR |
| ACCAACATCAATATCACCGG+TGG | 0.687753 | 1_1:+11121419 | None:intergenic |
| TCTTGGATGATGGAACTGGA+CGG | 0.689698 | 1_1:-11125086 | Msa0007790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATATGTTTTATTTTAC+TGG | + | chr1_1:11124020-11124039 | None:intergenic | 10.0% |
| !!! | TATTTATTACTTTTCATTAA+TGG | - | chr1_1:11125434-11125453 | Msa0007790:intron | 10.0% |
| !!! | TCATTTTCTCATATTATTAT+GGG | - | chr1_1:11121911-11121930 | Msa0007790:intron | 15.0% |
| !!! | GTTAATAGCAAAATTTTATT+AGG | + | chr1_1:11123829-11123848 | None:intergenic | 15.0% |
| !!! | AACCAAAAAATCATTTTATT+GGG | + | chr1_1:11124651-11124670 | None:intergenic | 15.0% |
| !!! | AAACCAAAAAATCATTTTAT+TGG | + | chr1_1:11124652-11124671 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTCTAACTTCA+GGG | - | chr1_1:11125302-11125321 | Msa0007790:intron | 15.0% |
| !!! | GACTGATTTCATATATTTTA+AGG | + | chr1_1:11121830-11121849 | None:intergenic | 20.0% |
| !!! | GTCATTTTCTCATATTATTA+TGG | - | chr1_1:11121910-11121929 | Msa0007790:intron | 20.0% |
| !!! | TTTAACTCGTTGTATATTTT+TGG | - | chr1_1:11122364-11122383 | Msa0007790:CDS | 20.0% |
| !!! | GATTATTTATGACTTCTTTT+CGG | - | chr1_1:11122518-11122537 | Msa0007790:intron | 20.0% |
| !! | AAATATAAACAAAATGGGTA+TGG | + | chr1_1:11122824-11122843 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTACAATCTTC+AGG | + | chr1_1:11123373-11123392 | None:intergenic | 20.0% |
| !!! | TGTTTTGAATCATTAATCAA+TGG | + | chr1_1:11123457-11123476 | None:intergenic | 20.0% |
| !! | AATAGAACAGTTATAGATAA+TGG | + | chr1_1:11123667-11123686 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGTTTTGATCTT+AGG | + | chr1_1:11124088-11124107 | None:intergenic | 20.0% |
| !!! | TAGGCTAATTTATTTTAACT+CGG | - | chr1_1:11124389-11124408 | Msa0007790:intron | 20.0% |
| !!! | TTCCCAATAAAATGATTTTT+TGG | - | chr1_1:11124646-11124665 | Msa0007790:intron | 20.0% |
| !! | TATTATTGCATGATAATTGA+TGG | - | chr1_1:11124970-11124989 | Msa0007790:intron | 20.0% |
| !! | TAATCCAAAAAACAAAAGTA+AGG | + | chr1_1:11125128-11125147 | None:intergenic | 20.0% |
| !!! | TTTTTTGGATTATAGATAGA+AGG | - | chr1_1:11125136-11125155 | Msa0007790:CDS | 20.0% |
| !!! | GATATAATTTTTCTAACTTC+AGG | - | chr1_1:11125301-11125320 | Msa0007790:intron | 20.0% |
| !!! | TGTTATTTTTACATGTTACA+AGG | - | chr1_1:11125527-11125546 | Msa0007790:intron | 20.0% |
| !!! | TGATTAATTGTATGCATTTT+TGG | - | chr1_1:11125569-11125588 | Msa0007790:intron | 20.0% |
| !! | AGTATCATATAAACTGAAAT+TGG | + | chr1_1:11125785-11125804 | None:intergenic | 20.0% |
| !!! | ATTTTAAATTGCAGAGATAT+GGG | - | chr1_1:11125822-11125841 | Msa0007790:intron | 20.0% |
| !!! | TTTTTGTATTTGTCTCATTT+TGG | - | chr1_1:11125925-11125944 | Msa0007790:intron | 20.0% |
| !!! | TTTTGTATTTGTCTCATTTT+GGG | - | chr1_1:11125926-11125945 | Msa0007790:intron | 20.0% |
| !! | TTTAGTCAAAAGACATAATA+CGG | + | chr1_1:11126241-11126260 | None:intergenic | 20.0% |
| ! | AAGTCCAATTTCTCAATTAA+CGG | - | chr1_1:11121544-11121563 | Msa0007790:intron | 25.0% |
| !! | TTTCTTTTGTATGATTTTCG+TGG | - | chr1_1:11121678-11121697 | Msa0007790:CDS | 25.0% |
| !! | TTATTGTAGCATGGTTATTT+TGG | - | chr1_1:11122213-11122232 | Msa0007790:CDS | 25.0% |
| !!! | TATTGTAGCATGGTTATTTT+GGG | - | chr1_1:11122214-11122233 | Msa0007790:CDS | 25.0% |
| ! | TATACAACGAGTTAAATAAG+AGG | + | chr1_1:11122360-11122379 | None:intergenic | 25.0% |
| ! | AAATTTCTTAACATGTGTTG+TGG | - | chr1_1:11122543-11122562 | Msa0007790:intron | 25.0% |
| ! | AGTAGACTGAATTTCATTAT+TGG | - | chr1_1:11122568-11122587 | Msa0007790:intron | 25.0% |
| !! | TCATTATTGGTTGTTTAATC+AGG | - | chr1_1:11122581-11122600 | Msa0007790:intron | 25.0% |
| !! | CATTATTGGTTGTTTAATCA+GGG | - | chr1_1:11122582-11122601 | Msa0007790:intron | 25.0% |
| ! | TACTGTAAGTACTTTAACTA+TGG | - | chr1_1:11122641-11122660 | Msa0007790:CDS | 25.0% |
| ! | TGTCAATGAATAATTAGAGA+AGG | + | chr1_1:11122713-11122732 | None:intergenic | 25.0% |
| ! | TTCTCTAATTATTCATTGAC+AGG | - | chr1_1:11122712-11122731 | Msa0007790:intron | 25.0% |
| ! | TAATTATTCATTGACAGGAA+TGG | - | chr1_1:11122717-11122736 | Msa0007790:intron | 25.0% |
| !! | ATTTTCATGTTTTGTCTCAT+GGG | - | chr1_1:11123118-11123137 | Msa0007790:intron | 25.0% |
| ! | CGGTGAGATTTAAATTTAAA+TGG | - | chr1_1:11123339-11123358 | Msa0007790:intron | 25.0% |
| !! | CTTTAAGAGGTTTCATTAAT+GGG | - | chr1_1:11123607-11123626 | Msa0007790:intron | 25.0% |
| ! | TTATTATTCACTCTGCTTTA+GGG | + | chr1_1:11123960-11123979 | None:intergenic | 25.0% |
| ! | TTTATTATTCACTCTGCTTT+AGG | + | chr1_1:11123961-11123980 | None:intergenic | 25.0% |
| !!! | TTATTTTACTGGAAATGTGT+CGG | + | chr1_1:11124009-11124028 | None:intergenic | 25.0% |
| !! | TTTTGTAGCTGAATTTTTCT+TGG | - | chr1_1:11124122-11124141 | Msa0007790:intron | 25.0% |
| !!! | TATAAGTTTTTGAGCTAATG+TGG | + | chr1_1:11124493-11124512 | None:intergenic | 25.0% |
| !!! | ATGTCTTTGATTTGTCAAAT+TGG | - | chr1_1:11124786-11124805 | Msa0007790:intron | 25.0% |
| !!! | AATTGGCTGTTTTAATCATA+TGG | - | chr1_1:11124803-11124822 | Msa0007790:intron | 25.0% |
| ! | TAACCCATTTATAAGATCAT+TGG | - | chr1_1:11125043-11125062 | Msa0007790:intron | 25.0% |
| ! | CTTCCAATGATCTTATAAAT+GGG | + | chr1_1:11125049-11125068 | None:intergenic | 25.0% |
| ! | ACTTCCAATGATCTTATAAA+TGG | + | chr1_1:11125050-11125069 | None:intergenic | 25.0% |
| !!! | AATGCCTTACTTTTGTTTTT+TGG | - | chr1_1:11125121-11125140 | Msa0007790:CDS | 25.0% |
| ! | ACTTACATCAAATATCATAC+CGG | + | chr1_1:11125250-11125269 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTAGTTTTTCAT+TGG | - | chr1_1:11125272-11125291 | Msa0007790:intron | 25.0% |
| ! | ACTCAAGGATATTGATAAAT+TGG | - | chr1_1:11125346-11125365 | Msa0007790:intron | 25.0% |
| !! | TTTCATTAATGGTTTCAAGT+AGG | - | chr1_1:11125445-11125464 | Msa0007790:intron | 25.0% |
| ! | AAAACTGTTGTCAATATTTC+TGG | - | chr1_1:11125610-11125629 | Msa0007790:intron | 25.0% |
| !! | GATTTTAAATTGCAGAGATA+TGG | - | chr1_1:11125821-11125840 | Msa0007790:intron | 25.0% |
| TACACCGTTAATTGAGAAAT+TGG | + | chr1_1:11121551-11121570 | None:intergenic | 30.0% | |
| CAGTTTATGAACTAAATTGC+TGG | + | chr1_1:11121796-11121815 | None:intergenic | 30.0% | |
| !!! | AAATTTGAAGCTAGCTTTTG+TGG | - | chr1_1:11122136-11122155 | Msa0007790:intron | 30.0% |
| AATGACTGTTGTGTATGAAT+GGG | + | chr1_1:11122195-11122214 | None:intergenic | 30.0% | |
| TAATGACTGTTGTGTATGAA+TGG | + | chr1_1:11122196-11122215 | None:intergenic | 30.0% | |
| !!! | TCGTTGTATATTTTTGGTTC+AGG | - | chr1_1:11122370-11122389 | Msa0007790:CDS | 30.0% |
| !!! | ATTTTTGGTTCAGGTTACAT+TGG | - | chr1_1:11122379-11122398 | Msa0007790:CDS | 30.0% |
| ! | CACTGATGTTAATTTTGTCT+TGG | - | chr1_1:11122433-11122452 | Msa0007790:intron | 30.0% |
| ! | GTTAATTTTGTCTTGGATGA+TGG | - | chr1_1:11122440-11122459 | Msa0007790:intron | 30.0% |
| !! | AAATGAGAGTTTTGACACAA+AGG | - | chr1_1:11122606-11122625 | Msa0007790:intron | 30.0% |
| ATGATATAGATTTACGAGTC+TGG | - | chr1_1:11122670-11122689 | Msa0007790:CDS | 30.0% | |
| TGATATAGATTTACGAGTCT+GGG | - | chr1_1:11122671-11122690 | Msa0007790:CDS | 30.0% | |
| CTGAAAGCAAATAAACAACA+TGG | + | chr1_1:11122858-11122877 | None:intergenic | 30.0% | |
| TTTATGTGATGATACGAAAG+AGG | + | chr1_1:11122978-11122997 | None:intergenic | 30.0% | |
| ATATATGGGTGATTGTGTAT+AGG | - | chr1_1:11123071-11123090 | Msa0007790:intron | 30.0% | |
| ! | GATTTTCATGTTTTGTCTCA+TGG | - | chr1_1:11123117-11123136 | Msa0007790:intron | 30.0% |
| ACCATAACCCATAATTTGAA+CGG | + | chr1_1:11123145-11123164 | None:intergenic | 30.0% | |
| TGTGTAACTGAATGCTTAAT+AGG | - | chr1_1:11123292-11123311 | Msa0007790:intron | 30.0% | |
| ! | TGATATGCATTTTGTGTGAT+TGG | - | chr1_1:11123547-11123566 | Msa0007790:intron | 30.0% |
| !! | GCTTTAAGAGGTTTCATTAA+TGG | - | chr1_1:11123606-11123625 | Msa0007790:intron | 30.0% |
| ! | TTCATTAATGGGTGTTATGT+AGG | - | chr1_1:11123618-11123637 | Msa0007790:intron | 30.0% |
| !! | CTTTTGCTGTCTATTCTTAT+TGG | - | chr1_1:11123718-11123737 | Msa0007790:intron | 30.0% |
| !! | CATTTAGTTCTCTCTGTTAT+TGG | - | chr1_1:11124053-11124072 | Msa0007790:intron | 30.0% |
| AATTTACACCTTACAGAACA+TGG | - | chr1_1:11124274-11124293 | Msa0007790:intron | 30.0% | |
| ATTTACACCTTACAGAACAT+GGG | - | chr1_1:11124275-11124294 | Msa0007790:intron | 30.0% | |
| TAAATCGTTTGTCTAATAGC+TGG | - | chr1_1:11124511-11124530 | Msa0007790:intron | 30.0% | |
| AGTAAAGACAATCTTATACC+TGG | - | chr1_1:11124567-11124586 | Msa0007790:intron | 30.0% | |
| ACAATCTTATACCTGGTTAT+GGG | - | chr1_1:11124574-11124593 | Msa0007790:intron | 30.0% | |
| TGCTTTGTAATTCAACAAAC+AGG | + | chr1_1:11124691-11124710 | None:intergenic | 30.0% | |
| CAAAGCATGATATTTAGTAG+TGG | - | chr1_1:11124704-11124723 | Msa0007790:intron | 30.0% | |
| TCATATTTGTGATGTTTCAC+AGG | - | chr1_1:11124831-11124850 | Msa0007790:intron | 30.0% | |
| ATCTCATCAAAATTTGTCAC+GGG | + | chr1_1:11124857-11124876 | None:intergenic | 30.0% | |
| GATCTCATCAAAATTTGTCA+CGG | + | chr1_1:11124858-11124877 | None:intergenic | 30.0% | |
| AAATGTTTCAAATGGATCTC+AGG | - | chr1_1:11125210-11125229 | Msa0007790:intron | 30.0% | |
| ! | AATGTTTTCACCAAGTACAA+GGG | + | chr1_1:11125482-11125501 | None:intergenic | 30.0% |
| ! | AAATGTTTTCACCAAGTACA+AGG | + | chr1_1:11125483-11125502 | None:intergenic | 30.0% |
| !! | GAAATGTTGGTTTAAGATGA+TGG | + | chr1_1:11125640-11125659 | None:intergenic | 30.0% |
| TAACGGAAAAGATGAAATGT+TGG | + | chr1_1:11125653-11125672 | None:intergenic | 30.0% | |
| CTTGAAGTGAATGATTGTAA+CGG | + | chr1_1:11125670-11125689 | None:intergenic | 30.0% | |
| GTTGAAAGAGGAGAAATTTA+GGG | + | chr1_1:11125754-11125773 | None:intergenic | 30.0% | |
| TGTTGAAAGAGGAGAAATTT+AGG | + | chr1_1:11125755-11125774 | None:intergenic | 30.0% | |
| TTGGCAAATATTGTTGAAAG+AGG | + | chr1_1:11125766-11125785 | None:intergenic | 30.0% | |
| ATATCAAGCAAGTTTGTAGT+GGG | + | chr1_1:11126057-11126076 | None:intergenic | 30.0% | |
| AATATCAAGCAAGTTTGTAG+TGG | + | chr1_1:11126058-11126077 | None:intergenic | 30.0% | |
| TCATCTAAAGAATATAGCTG+AGG | - | chr1_1:11126081-11126100 | Msa0007790:intron | 30.0% | |
| TAAAGAATATAGCTGAGGAT+CGG | - | chr1_1:11126086-11126105 | Msa0007790:intron | 30.0% | |
| !! | ATATTGATGTTGGTCTGTTT+TGG | - | chr1_1:11126126-11126145 | Msa0007790:intron | 30.0% |
| !!! | AGGTTGATGTAGATATTTTC+TGG | - | chr1_1:11126154-11126173 | Msa0007790:intron | 30.0% |
| AAGATAGCGCTTACTTTAGT+CGG | + | chr1_1:11121372-11121391 | None:intergenic | 35.0% | |
| ATAAGTGAAGCTTCTCATTC+TGG | - | chr1_1:11121514-11121533 | Msa0007790:CDS | 35.0% | |
| !! | TATGGGTATTGATTTGTCAG+TGG | - | chr1_1:11121928-11121947 | Msa0007790:intron | 35.0% |
| !! | ATGGGTATTGATTTGTCAGT+GGG | - | chr1_1:11121929-11121948 | Msa0007790:intron | 35.0% |
| GTTGTTAGGACTAAATTGAC+AGG | + | chr1_1:11121997-11122016 | None:intergenic | 35.0% | |
| CAACAGTCATTATTGTAGCA+TGG | - | chr1_1:11122204-11122223 | Msa0007790:CDS | 35.0% | |
| !! | GAGTTTTGACACAAAGGAAA+TGG | - | chr1_1:11122612-11122631 | Msa0007790:intron | 35.0% |
| GATATAGATTTACGAGTCTG+GGG | - | chr1_1:11122672-11122691 | Msa0007790:CDS | 35.0% | |
| GCATGTATGTTCGTGTTTAT+GGG | - | chr1_1:11122739-11122758 | Msa0007790:intron | 35.0% | |
| ! | TACACCTTGAAAGCTTTTCA+AGG | + | chr1_1:11122766-11122785 | None:intergenic | 35.0% |
| TGAAAAGCTTTCAAGGTGTA+AGG | - | chr1_1:11122766-11122785 | Msa0007790:intron | 35.0% | |
| AAGAGAAAATCAAACCATGC+AGG | + | chr1_1:11122888-11122907 | None:intergenic | 35.0% | |
| TTCCTTGAACTAGTGACAAA+AGG | + | chr1_1:11122936-11122955 | None:intergenic | 35.0% | |
| AAACATGAAAATCCAACCCT+CGG | + | chr1_1:11123110-11123129 | None:intergenic | 35.0% | |
| ! | TCCGTTCAAATTATGGGTTA+TGG | - | chr1_1:11123141-11123160 | Msa0007790:intron | 35.0% |
| !! | ATTTGTTGCTTTCTCAGGAA+GGG | - | chr1_1:11123245-11123264 | Msa0007790:intron | 35.0% |
| AATGCTTAATAGGAGCAAGT+TGG | - | chr1_1:11123302-11123321 | Msa0007790:intron | 35.0% | |
| ! | TTAATAGGAGCAAGTTGGAA+TGG | - | chr1_1:11123307-11123326 | Msa0007790:intron | 35.0% |
| ! | ATTTTACAATCTTCAGGCTC+TGG | + | chr1_1:11123367-11123386 | None:intergenic | 35.0% |
| AACTGTAGGATATGTCTTGT+CGG | + | chr1_1:11123417-11123436 | None:intergenic | 35.0% | |
| ACAAAGCAAAAGCTCAACAT+TGG | + | chr1_1:11123497-11123516 | None:intergenic | 35.0% | |
| ! | AATGTTGAGCTTTTGCTTTG+TGG | - | chr1_1:11123496-11123515 | Msa0007790:intron | 35.0% |
| ! | TATGCATTTTGTGTGATTGG+TGG | - | chr1_1:11123550-11123569 | Msa0007790:intron | 35.0% |
| ! | TTGCCTCTAGTGTATACTTT+TGG | - | chr1_1:11123581-11123600 | Msa0007790:intron | 35.0% |
| !! | ATACTTTTGGCTGCTTTAAG+AGG | - | chr1_1:11123594-11123613 | Msa0007790:intron | 35.0% |
| TAGTGCATAGAGAAGAAAAG+AGG | - | chr1_1:11123854-11123873 | Msa0007790:intron | 35.0% | |
| AAGAAAAGAGGAGAGAACAA+AGG | - | chr1_1:11123866-11123885 | Msa0007790:intron | 35.0% | |
| AGAAAAGAGGAGAGAACAAA+GGG | - | chr1_1:11123867-11123886 | Msa0007790:intron | 35.0% | |
| TTTACACCTTACAGAACATG+GGG | - | chr1_1:11124276-11124295 | Msa0007790:intron | 35.0% | |
| CAAAAACATAGTCTGAAAGC+AGG | + | chr1_1:11124322-11124341 | None:intergenic | 35.0% | |
| TTCTGTCAATGAACATCAAC+TGG | - | chr1_1:11124419-11124438 | Msa0007790:intron | 35.0% | |
| ! | GTTTTTGCCTAATGTTACTC+TGG | - | chr1_1:11124451-11124470 | Msa0007790:intron | 35.0% |
| TCACAAACCAGAGTAACATT+AGG | + | chr1_1:11124461-11124480 | None:intergenic | 35.0% | |
| GACAATCTTATACCTGGTTA+TGG | - | chr1_1:11124573-11124592 | Msa0007790:intron | 35.0% | |
| ATGCAGTCGATAAAGTGAAA+CGG | + | chr1_1:11124881-11124900 | None:intergenic | 35.0% | |
| !! | TGTTTACCTTTAGTTTGCTG+CGG | + | chr1_1:11124916-11124935 | None:intergenic | 35.0% |
| TGGATACTGCATAAACTTTC+TGG | - | chr1_1:11124996-11125015 | Msa0007790:intron | 35.0% | |
| TTCATAGACGAGTTTGATGA+AGG | + | chr1_1:11125178-11125197 | None:intergenic | 35.0% | |
| ! | CCATTTGAAACATTTCTGAC+AGG | + | chr1_1:11125205-11125224 | None:intergenic | 35.0% |
| CCTGTCAGAAATGTTTCAAA+TGG | - | chr1_1:11125202-11125221 | Msa0007790:intron | 35.0% | |
| TATCATACCGGATTTGATGA+TGG | + | chr1_1:11125238-11125257 | None:intergenic | 35.0% | |
| GGATATGTACAATATAGCAC+TGG | - | chr1_1:11125323-11125342 | Msa0007790:intron | 35.0% | |
| CAATCAAAGCAAATTGAACG+TGG | - | chr1_1:11125697-11125716 | Msa0007790:intron | 35.0% | |
| ! | TTTGTAGTGGGAATCATCTA+TGG | + | chr1_1:11126045-11126064 | None:intergenic | 35.0% |
| AAAGAATATAGCTGAGGATC+GGG | - | chr1_1:11126087-11126106 | Msa0007790:intron | 35.0% | |
| ! | GTGAGATCATTTAAAGTGCT+CGG | + | chr1_1:11126267-11126286 | None:intergenic | 35.0% |
| TTGAAGAGTCGTGATTCTCA+GGG | - | chr1_1:11121466-11121485 | Msa0007790:exon | 40.0% | |
| TGATTCTCAGGGTTTGATTC+CGG | - | chr1_1:11121477-11121496 | Msa0007790:exon | 40.0% | |
| GTGTACATGCTTCATAGCTA+AGG | - | chr1_1:11121961-11121980 | Msa0007790:intron | 40.0% | |
| ! | AGTCCTAACAACTTGATAGC+AGG | - | chr1_1:11122005-11122024 | Msa0007790:intron | 40.0% |
| ! | GTCCTAACAACTTGATAGCA+GGG | - | chr1_1:11122006-11122025 | Msa0007790:intron | 40.0% |
| ! | TTGGTTCAGGTTACATTGGT+TGG | - | chr1_1:11122383-11122402 | Msa0007790:CDS | 40.0% |
| ! | TCAGGTTACATTGGTTGGAA+TGG | - | chr1_1:11122388-11122407 | Msa0007790:CDS | 40.0% |
| TGGAATGGTGTATGAGAAAG+TGG | - | chr1_1:11122403-11122422 | Msa0007790:intron | 40.0% | |
| !! | TTTGTCTTGGATGATGGAAC+TGG | - | chr1_1:11122446-11122465 | Msa0007790:intron | 40.0% |
| GGCATGTATGTTCGTGTTTA+TGG | - | chr1_1:11122738-11122757 | Msa0007790:intron | 40.0% | |
| ! | AGCCTTTTGTCACTAGTTCA+AGG | - | chr1_1:11122931-11122950 | Msa0007790:intron | 40.0% |
| GTTCAAGGAAATTACACACG+AGG | - | chr1_1:11122946-11122965 | Msa0007790:intron | 40.0% | |
| TTTGTCGATATCCAACCTCT+CGG | - | chr1_1:11123038-11123057 | Msa0007790:intron | 40.0% | |
| TCGGGTGCTTGATCATATAT+GGG | - | chr1_1:11123057-11123076 | Msa0007790:intron | 40.0% | |
| AACATGAAAATCCAACCCTC+GGG | + | chr1_1:11123109-11123128 | None:intergenic | 40.0% | |
| TCATGGGTCCGTTCAAATTA+TGG | - | chr1_1:11123134-11123153 | Msa0007790:intron | 40.0% | |
| CATGGGTCCGTTCAAATTAT+GGG | - | chr1_1:11123135-11123154 | Msa0007790:intron | 40.0% | |
| ATCAGAGTTGTATCCACAGA+AGG | + | chr1_1:11123227-11123246 | None:intergenic | 40.0% | |
| !! | CTCTGATTTGTTGCTTTCTC+AGG | - | chr1_1:11123240-11123259 | Msa0007790:intron | 40.0% |
| !! | GATTTGTTGCTTTCTCAGGA+AGG | - | chr1_1:11123244-11123263 | Msa0007790:intron | 40.0% |
| !! | TTTGTTGCTTTCTCAGGAAG+GGG | - | chr1_1:11123246-11123265 | Msa0007790:intron | 40.0% |
| ! | ATCATTTTACAGTCCCCTGA+TGG | - | chr1_1:11123385-11123404 | Msa0007790:intron | 40.0% |
| ! | CATTGGAAGCATACACTAGA+TGG | + | chr1_1:11123480-11123499 | None:intergenic | 40.0% |
| ! | CAGCCAAAAGTATACACTAG+AGG | + | chr1_1:11123587-11123606 | None:intergenic | 40.0% |
| !! | TGTGTCGGCTGTTAGATAAT+AGG | + | chr1_1:11123994-11124013 | None:intergenic | 40.0% |
| GTCTGAAAGCAGGCTAAATA+AGG | + | chr1_1:11124312-11124331 | None:intergenic | 40.0% | |
| ! | ACCCAAGTTTAGAGTCAACT+AGG | - | chr1_1:11124370-11124389 | Msa0007790:intron | 40.0% |
| ! | GCCTAGTTGACTCTAAACTT+GGG | + | chr1_1:11124374-11124393 | None:intergenic | 40.0% |
| ! | AGCCTAGTTGACTCTAAACT+TGG | + | chr1_1:11124375-11124394 | None:intergenic | 40.0% |
| TGTCCTTGTTACATTTGTGG+AGG | - | chr1_1:11124597-11124616 | Msa0007790:intron | 40.0% | |
| CTACCTCCACAAATGTAACA+AGG | + | chr1_1:11124603-11124622 | None:intergenic | 40.0% | |
| TGAGCACGCTAGTATATGTA+AGG | + | chr1_1:11124750-11124769 | None:intergenic | 40.0% | |
| TGCAGTCGATAAAGTGAAAC+GGG | + | chr1_1:11124880-11124899 | None:intergenic | 40.0% | |
| ! | TGCATGATAATTGATGGCAG+TGG | - | chr1_1:11124976-11124995 | Msa0007790:intron | 40.0% |
| ! | ACAATATAGCACTGGACTCA+AGG | - | chr1_1:11125331-11125350 | Msa0007790:intron | 40.0% |
| AATGCTGCTGCAGATAGTTA+AGG | + | chr1_1:11125373-11125392 | None:intergenic | 40.0% | |
| ! | GGTTTCAAGTAGGATGACTA+AGG | - | chr1_1:11125455-11125474 | Msa0007790:intron | 40.0% |
| CTGGCATTATGAACAGCATT+GGG | + | chr1_1:11125978-11125997 | None:intergenic | 40.0% | |
| CAGACCAACATCAATATCAC+CGG | + | chr1_1:11126123-11126142 | None:intergenic | 40.0% | |
| !!! | GTTGGTCTGTTTTGGTTCAT+AGG | - | chr1_1:11126134-11126153 | Msa0007790:intron | 40.0% |
| TCTCTCTCTCTCTCTCTCTA+GGG | - | chr1_1:11121252-11121271 | Msa0007790:three_prime_UTR | 45.0% | |
| GTTGAAGAGTCGTGATTCTC+AGG | - | chr1_1:11121465-11121484 | Msa0007790:three_prime_UTR | 45.0% | |
| TCAGGGTTTGATTCCGGTTA+CGG | - | chr1_1:11121483-11121502 | Msa0007790:exon | 45.0% | |
| CTTATCTGCTTCACCGTAAC+CGG | + | chr1_1:11121499-11121518 | None:intergenic | 45.0% | |
| ! | GTCCCTGCTATCAAGTTGTT+AGG | + | chr1_1:11122011-11122030 | None:intergenic | 45.0% |
| TGGTGTATGAGAAAGTGGAG+AGG | - | chr1_1:11122408-11122427 | Msa0007790:intron | 45.0% | |
| !! | TCTTGGATGATGGAACTGGA+CGG | - | chr1_1:11122450-11122469 | Msa0007790:intron | 45.0% |
| !! | CCTGCAGAAAGTACCATCTT+CGG | + | chr1_1:11122484-11122503 | None:intergenic | 45.0% |
| GGGTCCTTGAAAAGCTTTCA+AGG | - | chr1_1:11122759-11122778 | Msa0007790:intron | 45.0% | |
| !! | CTTTCAGTTTGTTGCCTGCA+TGG | - | chr1_1:11122871-11122890 | Msa0007790:intron | 45.0% |
| TTGTCGATATCCAACCTCTC+GGG | - | chr1_1:11123039-11123058 | Msa0007790:intron | 45.0% | |
| TATATGATCAAGCACCCGAG+AGG | + | chr1_1:11123056-11123075 | None:intergenic | 45.0% | |
| CTCGGGTGCTTGATCATATA+TGG | - | chr1_1:11123056-11123075 | Msa0007790:intron | 45.0% | |
| TAGGTGCAGATGAGAGACAA+GGG | + | chr1_1:11123196-11123215 | None:intergenic | 45.0% | |
| TTAGGTGCAGATGAGAGACA+AGG | + | chr1_1:11123197-11123216 | None:intergenic | 45.0% | |
| ACCTAAGTGAGATCCTTCTG+TGG | - | chr1_1:11123211-11123230 | Msa0007790:intron | 45.0% | |
| TCCACAGAAGGATCTCACTT+AGG | + | chr1_1:11123215-11123234 | None:intergenic | 45.0% | |
| !! | TTGTTGCTTTCTCAGGAAGG+GGG | - | chr1_1:11123247-11123266 | Msa0007790:intron | 45.0% |
| TGTGGTTTGATCACTGAGCT+TGG | - | chr1_1:11123514-11123533 | Msa0007790:intron | 45.0% | |
| GTGGTTTGATCACTGAGCTT+GGG | - | chr1_1:11123515-11123534 | Msa0007790:intron | 45.0% | |
| TGTCACAAGACATAACAGGC+AGG | + | chr1_1:11123795-11123814 | None:intergenic | 45.0% | |
| GCACTGTCACAAGACATAAC+AGG | + | chr1_1:11123799-11123818 | None:intergenic | 45.0% | |
| AAAGGGAATGAAGCTCTGCT+AGG | - | chr1_1:11123884-11123903 | Msa0007790:intron | 45.0% | |
| CATCATCCCCATGTTCTGTA+AGG | + | chr1_1:11124285-11124304 | None:intergenic | 45.0% | |
| TAACAAGGACACCCATAACC+AGG | + | chr1_1:11124588-11124607 | None:intergenic | 45.0% | |
| GGGTGTCCTTGTTACATTTG+TGG | - | chr1_1:11124594-11124613 | Msa0007790:intron | 45.0% | |
| !! | TTACCTTTAGTTTGCTGCGG+AGG | + | chr1_1:11124913-11124932 | None:intergenic | 45.0% |
| TCAGGCACCATCATCAAATC+CGG | - | chr1_1:11125228-11125247 | Msa0007790:intron | 45.0% | |
| TGACTAAGGACCCTTGTACT+TGG | - | chr1_1:11125469-11125488 | Msa0007790:intron | 45.0% | |
| ACTCACATGATCTTGTCCAC+TGG | + | chr1_1:11125885-11125904 | None:intergenic | 45.0% | |
| CCTGGCATTATGAACAGCAT+TGG | + | chr1_1:11125979-11125998 | None:intergenic | 45.0% | |
| CCAATGCTGTTCATAATGCC+AGG | - | chr1_1:11125976-11125995 | Msa0007790:CDS | 45.0% | |
| ! | CTGAAGGCTACTTTAGAGGA+CGG | - | chr1_1:11126005-11126024 | Msa0007790:CDS | 45.0% |
| ! | GTAGTGGGAATCATCTATGG+TGG | + | chr1_1:11126042-11126061 | None:intergenic | 45.0% |
| TCAATATCACCGGTGGTTCT+TGG | + | chr1_1:11126113-11126132 | None:intergenic | 45.0% | |
| ACCACCGGTGATATTGATGT+TGG | - | chr1_1:11126116-11126135 | Msa0007790:intron | 45.0% | |
| ACCAACATCAATATCACCGG+TGG | + | chr1_1:11126120-11126139 | None:intergenic | 45.0% | |
| !!! | TTTTAATTCAAAAAAAAAAA+AGG | + | chr1_1:11121598-11121617 | None:intergenic | 5.0% |
| !! | TAATAAAATATAAACAAAAT+GGG | + | chr1_1:11122829-11122848 | None:intergenic | 5.0% |
| !! | TTAATAAAATATAAACAAAA+TGG | + | chr1_1:11122830-11122849 | None:intergenic | 5.0% |
| !! | TAAACTATATAATTATAATT+TGG | - | chr1_1:11122994-11123013 | Msa0007790:intron | 5.0% |
| CTCTCTCTCTCTCTCTCTCT+AGG | - | chr1_1:11121231-11121250 | Msa0007790:three_prime_UTR | 50.0% | |
| ! | AGAAGAATCGTTGGGTTGCG+AGG | + | chr1_1:11121343-11121362 | None:intergenic | 50.0% |
| GCAACCCAACGATTCTTCTC+CGG | - | chr1_1:11121344-11121363 | Msa0007790:three_prime_UTR | 50.0% | |
| GACGGATCAAATGCCGAAGA+TGG | - | chr1_1:11122468-11122487 | Msa0007790:intron | 50.0% | |
| CCGAAGATGGTACTTTCTGC+AGG | - | chr1_1:11122481-11122500 | Msa0007790:intron | 50.0% | |
| AACTTGTCGCCTTCTCTGTC+AGG | - | chr1_1:11122790-11122809 | Msa0007790:intron | 50.0% | |
| GCAAACATGCCTGACAGAGA+AGG | + | chr1_1:11122802-11122821 | None:intergenic | 50.0% | |
| TAGGCAATTGCTTTGTCCCG+AGG | - | chr1_1:11123090-11123109 | Msa0007790:intron | 50.0% | |
| AGGCAATTGCTTTGTCCCGA+GGG | - | chr1_1:11123091-11123110 | Msa0007790:intron | 50.0% | |
| AATTGCTTTGTCCCGAGGGT+TGG | - | chr1_1:11123095-11123114 | Msa0007790:intron | 50.0% | |
| ! | GAGCAAGTTGGAATGGTGCT+GGG | - | chr1_1:11123314-11123333 | Msa0007790:intron | 50.0% |
| ! | AGCAAGTTGGAATGGTGCTG+GGG | - | chr1_1:11123315-11123334 | Msa0007790:intron | 50.0% |
| !! | TTGTCGGTGTCATCCATCAG+GGG | + | chr1_1:11123401-11123420 | None:intergenic | 50.0% |
| !! | CTTGTCGGTGTCATCCATCA+GGG | + | chr1_1:11123402-11123421 | None:intergenic | 50.0% |
| !! | TCTTGTCGGTGTCATCCATC+AGG | + | chr1_1:11123403-11123422 | None:intergenic | 50.0% |
| CAAGTCTGCAGCTGAACTGT+AGG | + | chr1_1:11123431-11123450 | None:intergenic | 50.0% | |
| AAGAGAGCTCAAGCTTCCAG+TGG | - | chr1_1:11125866-11125885 | Msa0007790:intron | 50.0% | |
| TAATGCCAGGTTGTCGCTGA+AGG | - | chr1_1:11125989-11126008 | Msa0007790:CDS | 50.0% | |
| ! | GTCGCTGAAGGCTACTTTAG+AGG | - | chr1_1:11126001-11126020 | Msa0007790:CDS | 50.0% |
| ! | GGCTACTTTAGAGGACGGTA+CGG | - | chr1_1:11126010-11126029 | Msa0007790:CDS | 50.0% |
| !! | GGAGGCATCGAATTGGGAGT+TGG | + | chr1_1:11121292-11121311 | None:intergenic | 55.0% |
| !! | GGCGTTGGAGGCATCGAATT+GGG | + | chr1_1:11121298-11121317 | None:intergenic | 55.0% |
| !! | AGGCGTTGGAGGCATCGAAT+TGG | + | chr1_1:11121299-11121318 | None:intergenic | 55.0% |
| ! | GGTGCCGGAGAAGAATCGTT+GGG | + | chr1_1:11121351-11121370 | None:intergenic | 55.0% |
| GCGCTTACTTTAGTCGGTGC+CGG | + | chr1_1:11121366-11121385 | None:intergenic | 55.0% | |
| TGATCAAGCACCCGAGAGGT+TGG | + | chr1_1:11123052-11123071 | None:intergenic | 55.0% | |
| TTGCTTTCTCAGGAAGGGGG+TGG | - | chr1_1:11123250-11123269 | Msa0007790:intron | 55.0% | |
| TGCTTTCTCAGGAAGGGGGT+GGG | - | chr1_1:11123251-11123270 | Msa0007790:intron | 55.0% | |
| !! | GAAGGGGGTGGGTTGTCAAA+GGG | - | chr1_1:11123262-11123281 | Msa0007790:intron | 55.0% |
| ! | GGAGCAAGTTGGAATGGTGC+TGG | - | chr1_1:11123313-11123332 | Msa0007790:intron | 55.0% |
| ! | GCAAGTTGGAATGGTGCTGG+GGG | - | chr1_1:11123316-11123335 | Msa0007790:intron | 55.0% |
| !! | CCTTTAGTTTGCTGCGGAGG+TGG | + | chr1_1:11124910-11124929 | None:intergenic | 55.0% |
| CCACCTCCGCAGCAAACTAA+AGG | - | chr1_1:11124907-11124926 | Msa0007790:intron | 55.0% | |
| AGTAGCCTTCAGCGACAACC+TGG | + | chr1_1:11125997-11126016 | None:intergenic | 55.0% | |
| GATGCCTCCAACGCCTTCTC+CGG | - | chr1_1:11121303-11121322 | Msa0007790:three_prime_UTR | 60.0% | |
| ! | CGGTGCCGGAGAAGAATCGT+TGG | + | chr1_1:11121352-11121371 | None:intergenic | 60.0% |
| !! | GGAAGGGGGTGGGTTGTCAA+AGG | - | chr1_1:11123261-11123280 | Msa0007790:intron | 60.0% |
| ! | AGTTGGAATGGTGCTGGGGG+CGG | - | chr1_1:11123319-11123338 | Msa0007790:intron | 60.0% |
| AGGATCGGGCCAAGAACCAC+CGG | - | chr1_1:11126101-11126120 | Msa0007790:intron | 60.0% | |
| CATGAATCCGCCGCCGGAGA+AGG | + | chr1_1:11121319-11121338 | None:intergenic | 65.0% | |
| CGAGGACATGAATCCGCCGC+CGG | + | chr1_1:11121325-11121344 | None:intergenic | 65.0% | |
| GCCTCCAACGCCTTCTCCGG+CGG | - | chr1_1:11121306-11121325 | Msa0007790:three_prime_UTR | 70.0% | |
| TCCAACGCCTTCTCCGGCGG+CGG | - | chr1_1:11121309-11121328 | Msa0007790:three_prime_UTR | 70.0% | |
| !! | GCCGCCGGAGAAGGCGTTGG+AGG | + | chr1_1:11121310-11121329 | None:intergenic | 75.0% |
| ! | TCCGCCGCCGGAGAAGGCGT+TGG | + | chr1_1:11121313-11121332 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 11121230 | 11126328 | 11121230 | ID=Msa0007790;Name=Msa0007790 |
| chr1_1 | mRNA | 11121230 | 11126328 | 11121230 | ID=Msa0007790-mRNA-1;Parent=Msa0007790;Name=Msa0007790-mRNA-1;_AED=0.10;_eAED=0.10;_QI=52|0.88|0.9|1|0.88|1|10|255|248 |
| chr1_1 | exon | 11121230 | 11121560 | 11121230 | ID=Msa0007790-mRNA-1:exon:4139;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11121660 | 11121722 | 11121660 | ID=Msa0007790-mRNA-1:exon:4138;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11122159 | 11122235 | 11122159 | ID=Msa0007790-mRNA-1:exon:4137;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11122309 | 11122407 | 11122309 | ID=Msa0007790-mRNA-1:exon:4136;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11122630 | 11122705 | 11122630 | ID=Msa0007790-mRNA-1:exon:4135;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11124816 | 11124824 | 11124816 | ID=Msa0007790-mRNA-1:exon:4134;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11124914 | 11124955 | 11124914 | ID=Msa0007790-mRNA-1:exon:4133;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11125069 | 11125166 | 11125069 | ID=Msa0007790-mRNA-1:exon:4132;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11125976 | 11126086 | 11125976 | ID=Msa0007790-mRNA-1:exon:4131;Parent=Msa0007790-mRNA-1 |
| chr1_1 | exon | 11126181 | 11126328 | 11126181 | ID=Msa0007790-mRNA-1:exon:4130;Parent=Msa0007790-mRNA-1 |
| chr1_1 | five_prime_UTR | 11126277 | 11126328 | 11126277 | ID=Msa0007790-mRNA-1:five_prime_utr;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11126181 | 11126276 | 11126181 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11125976 | 11126086 | 11125976 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11125069 | 11125166 | 11125069 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11124914 | 11124955 | 11124914 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11124816 | 11124824 | 11124816 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11122630 | 11122705 | 11122630 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11122309 | 11122407 | 11122309 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11122159 | 11122235 | 11122159 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11121660 | 11121722 | 11121660 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | CDS | 11121485 | 11121560 | 11121485 | ID=Msa0007790-mRNA-1:cds;Parent=Msa0007790-mRNA-1 |
| chr1_1 | three_prime_UTR | 11121230 | 11121484 | 11121230 | ID=Msa0007790-mRNA-1:three_prime_utr;Parent=Msa0007790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
