Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007800 | sp|Q9ZQ19|RFA2A_ARATH | 42.086 | 278 | 127 | 6 | 1 | 247 | 1 | 275 | 4.63e-67 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007790 | Msa0007800 | 0.895091 | 1.331769e-75 | -8.615850e-47 |
| Msa0007800 | Msa0158900 | 0.806725 | 7.153763e-50 | -8.615850e-47 |
| Msa0007800 | Msa0373170 | 0.817745 | 2.812077e-52 | -8.615850e-47 |
| Msa0007800 | Msa0412130 | 0.808085 | 3.683196e-50 | -8.615850e-47 |
| Msa0007800 | Msa0421750 | 0.815813 | 7.627878e-52 | -8.615850e-47 |
| Msa0007800 | Msa0456670 | 0.807326 | 5.337790e-50 | -8.615850e-47 |
| Msa0007800 | Msa0467690 | 0.818877 | 1.558282e-52 | -8.615850e-47 |
| Msa0007800 | Msa0514020 | 0.816832 | 4.511816e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007800 | MtrunA17_Chr1g0148131 | 85.294 | 272 | 17 | 1 | 1 | 249 | 1 | 272 | 6.28e-171 | 472 |
| Msa0007800 | MtrunA17_Chr4g0072301 | 35.273 | 275 | 143 | 8 | 6 | 249 | 5 | 275 | 6.50e-48 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0007800 | AT2G24490.1 | 42.086 | 278 | 127 | 6 | 1 | 247 | 1 | 275 | 4.71e-68 | 211 |
| Msa0007800 | AT2G24490.2 | 42.086 | 278 | 127 | 6 | 1 | 247 | 1 | 275 | 4.71e-68 | 211 |
| Msa0007800 | AT3G02920.1 | 37.091 | 275 | 132 | 9 | 7 | 247 | 6 | 273 | 1.54e-48 | 161 |
| Msa0007800 | AT3G02920.3 | 37.611 | 226 | 102 | 8 | 7 | 200 | 6 | 224 | 3.47e-36 | 128 |
| Msa0007800 | AT3G02920.2 | 37.611 | 226 | 102 | 8 | 7 | 200 | 6 | 224 | 3.47e-36 | 128 |
Find 71 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCGTTAATTGAGAAAT+TGG | 0.204082 | 1_1:+11158609 | None:intergenic |
| ACTCAAGGATATTGATAAAT+TGG | 0.304503 | 1_1:-11154842 | Msa0007800:CDS |
| ATATTGATGTTGGTCTGTTT+TGG | 0.322076 | 1_1:-11154062 | Msa0007800:three_prime_UTR |
| CTTATCTGCTTCACCGTAAC+CGG | 0.334990 | 1_1:+11158661 | None:intergenic |
| ATAAGTGAAGCTTCTCATTC+TGG | 0.354608 | 1_1:-11158643 | Msa0007800:CDS |
| TCAATATCACCGGTGGTTCT+TGG | 0.355850 | 1_1:+11154078 | None:intergenic |
| GTTGAAGAGTCGTGATTCTC+AGG | 0.358292 | 1_1:-11158692 | Msa0007800:intron |
| TGATTCTCAGGGTTTGATTC+CGG | 0.362961 | 1_1:-11158680 | Msa0007800:CDS |
| TCAGGGTTTGATTCCGGTTA+CGG | 0.363797 | 1_1:-11158674 | Msa0007800:CDS |
| GTCGCTGAAGGCTACTTTAG+AGG | 0.369019 | 1_1:-11154187 | Msa0007800:CDS |
| AAGTCCAATTTCTCAATTAA+CGG | 0.371450 | 1_1:-11158613 | Msa0007800:CDS |
| TTTAGTCAAAAGACATAATA+CGG | 0.379640 | 1_1:+11153951 | None:intergenic |
| GGCGTTGGAGGCATCGAATT+GGG | 0.412602 | 1_1:+11158862 | None:intergenic |
| AGGCGTTGGAGGCATCGAAT+TGG | 0.421359 | 1_1:+11158861 | None:intergenic |
| TTGGTTCAGGTTACATTGGT+TGG | 0.431208 | 1_1:-11157773 | Msa0007800:intron |
| CCTGTCAGAAATGTTTCAAA+TGG | 0.445690 | 1_1:-11154989 | Msa0007800:CDS |
| TGCAGTCGATAAAGTGAAAC+GGG | 0.449660 | 1_1:+11155314 | None:intergenic |
| CCTTTAGTTTGCTGCGGAGG+TGG | 0.453665 | 1_1:+11155284 | None:intergenic |
| TTTGTCTTGGATGATGGAAC+TGG | 0.456132 | 1_1:-11157710 | Msa0007800:CDS |
| GATGCCTCCAACGCCTTCTC+CGG | 0.468351 | 1_1:-11158854 | Msa0007800:CDS |
| TCCAACGCCTTCTCCGGCGG+CGG | 0.469400 | 1_1:-11158848 | Msa0007800:CDS |
| AAATGTTTCAAATGGATCTC+AGG | 0.471853 | 1_1:-11154981 | Msa0007800:CDS |
| AATGCTGCTGCAGATAGTTA+AGG | 0.473253 | 1_1:+11154818 | None:intergenic |
| CCATTTGAAACATTTCTGAC+AGG | 0.490871 | 1_1:+11154989 | None:intergenic |
| TCAGGTTACATTGGTTGGAA+TGG | 0.491482 | 1_1:-11157768 | Msa0007800:intron |
| TTCATAGACGAGTTTGATGA+AGG | 0.492894 | 1_1:+11155016 | None:intergenic |
| AAAGAATATAGCTGAGGATC+GGG | 0.495302 | 1_1:-11154101 | Msa0007800:three_prime_UTR |
| TTTGTAGTGGGAATCATCTA+TGG | 0.496308 | 1_1:+11154146 | None:intergenic |
| AAGATAGCGCTTACTTTAGT+CGG | 0.498495 | 1_1:+11158788 | None:intergenic |
| CCTGCAGAAAGTACCATCTT+CGG | 0.499168 | 1_1:+11157675 | None:intergenic |
| CATGAATCCGCCGCCGGAGA+AGG | 0.506036 | 1_1:+11158841 | None:intergenic |
| TCAGGCACCATCATCAAATC+CGG | 0.520388 | 1_1:-11154963 | Msa0007800:intron |
| TATGTACAATATAGCACTGA+TGG | 0.524876 | 1_1:-11154865 | Msa0007800:CDS |
| TGGAATGGTGTATGAGAAAG+TGG | 0.525821 | 1_1:-11157753 | Msa0007800:CDS |
| GGAGGCATCGAATTGGGAGT+TGG | 0.527700 | 1_1:+11158868 | None:intergenic |
| GCCGCCGGAGAAGGCGTTGG+AGG | 0.529754 | 1_1:+11158850 | None:intergenic |
| CCACCTCCGCAGCAAACTAA+AGG | 0.530775 | 1_1:-11155284 | Msa0007800:intron |
| TAAAGAATATAGCTGAGGAT+CGG | 0.539485 | 1_1:-11154102 | Msa0007800:three_prime_UTR |
| GCGCTTACTTTAGTCGGTGC+CGG | 0.541742 | 1_1:+11158794 | None:intergenic |
| TATCATACCGGATTTGATGA+TGG | 0.544661 | 1_1:+11154956 | None:intergenic |
| AATATCAAGCAAGTTTGTAG+TGG | 0.546197 | 1_1:+11154133 | None:intergenic |
| ATGCAGTCGATAAAGTGAAA+CGG | 0.549087 | 1_1:+11155313 | None:intergenic |
| GGCTACTTTAGAGGACGGTA+CGG | 0.549974 | 1_1:-11154178 | Msa0007800:CDS |
| TTGAAGAGTCGTGATTCTCA+GGG | 0.553382 | 1_1:-11158691 | Msa0007800:intron |
| AGGATCGGGCCAAGAACCAC+CGG | 0.556128 | 1_1:-11154087 | Msa0007800:three_prime_UTR |
| ATCTCATCAAAATTTGTCAC+GGG | 0.561995 | 1_1:+11155337 | None:intergenic |
| TAATGCCAGGTTGTCGCTGA+AGG | 0.562273 | 1_1:-11154199 | Msa0007800:intron |
| CGGTGCCGGAGAAGAATCGT+TGG | 0.563089 | 1_1:+11158808 | None:intergenic |
| GACGGATCAAATGCCGAAGA+TGG | 0.564541 | 1_1:-11157688 | Msa0007800:intron |
| GTGAGATCATTTAAAGTGCT+CGG | 0.567408 | 1_1:+11153925 | None:intergenic |
| TCCGCCGCCGGAGAAGGCGT+TGG | 0.569147 | 1_1:+11158847 | None:intergenic |
| ACTCACATGATCTTGTCCAC+TGG | 0.569272 | 1_1:+11154306 | None:intergenic |
| AGAAGAATCGTTGGGTTGCG+AGG | 0.573054 | 1_1:+11158817 | None:intergenic |
| GATCTCATCAAAATTTGTCA+CGG | 0.573664 | 1_1:+11155336 | None:intergenic |
| ATATCAAGCAAGTTTGTAGT+GGG | 0.579740 | 1_1:+11154134 | None:intergenic |
| TTACCTTTAGTTTGCTGCGG+AGG | 0.584007 | 1_1:+11155281 | None:intergenic |
| CGAGGACATGAATCCGCCGC+CGG | 0.585196 | 1_1:+11158835 | None:intergenic |
| GCCTCCAACGCCTTCTCCGG+CGG | 0.589648 | 1_1:-11158851 | Msa0007800:CDS |
| GGTGCCGGAGAAGAATCGTT+GGG | 0.594405 | 1_1:+11158809 | None:intergenic |
| GCAACCCAACGATTCTTCTC+CGG | 0.596159 | 1_1:-11158813 | Msa0007800:CDS |
| ATATAGCACTGATGGACTCA+AGG | 0.596259 | 1_1:-11154857 | Msa0007800:CDS |
| TGTTTACCTTTAGTTTGCTG+CGG | 0.607394 | 1_1:+11155278 | None:intergenic |
| ACCACCGGTGATATTGATGT+TGG | 0.608508 | 1_1:-11154072 | Msa0007800:three_prime_UTR |
| CAGACCAACATCAATATCAC+CGG | 0.630232 | 1_1:+11154068 | None:intergenic |
| GTAGTGGGAATCATCTATGG+TGG | 0.656595 | 1_1:+11154149 | None:intergenic |
| TGGTGTATGAGAAAGTGGAG+AGG | 0.659213 | 1_1:-11157748 | Msa0007800:CDS |
| CTGAAGGCTACTTTAGAGGA+CGG | 0.662582 | 1_1:-11154183 | Msa0007800:CDS |
| AAGAGAGCTCAAGCTTCCAG+TGG | 0.665972 | 1_1:-11154322 | Msa0007800:CDS |
| TCATCTAAAGAATATAGCTG+AGG | 0.685865 | 1_1:-11154107 | Msa0007800:three_prime_UTR |
| ACCAACATCAATATCACCGG+TGG | 0.687753 | 1_1:+11154071 | None:intergenic |
| TCTTGGATGATGGAACTGGA+CGG | 0.689698 | 1_1:-11157706 | Msa0007800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATATGTTTTATTTTAC+TGG | + | chr1_1:11156633-11156652 | None:intergenic | 10.0% |
| !!! | TATTTATTACTTTTCATTAA+TGG | - | chr1_1:11158048-11158067 | Msa0007800:intron | 10.0% |
| !!! | GTTAATAGCAAAATTTTATT+AGG | + | chr1_1:11156475-11156494 | None:intergenic | 15.0% |
| !!! | AACCAAAAAATCATTTTATT+GGG | + | chr1_1:11157262-11157281 | None:intergenic | 15.0% |
| !!! | AAACCAAAAAATCATTTTAT+TGG | + | chr1_1:11157263-11157282 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTCTAACTTCA+GGG | - | chr1_1:11157913-11157932 | Msa0007800:intron | 15.0% |
| !!! | GACTGATTTCATATATTTTA+AGG | + | chr1_1:11154476-11154495 | None:intergenic | 20.0% |
| !!! | TTTAACTCGTTGTATATTTT+TGG | - | chr1_1:11155010-11155029 | Msa0007800:CDS | 20.0% |
| !!! | GATTATTTATGACTTCTTTT+CGG | - | chr1_1:11155164-11155183 | Msa0007800:intron | 20.0% |
| !! | AAATATAAACAAAATGGGTA+TGG | + | chr1_1:11155470-11155489 | None:intergenic | 20.0% |
| !!! | AAAATGATTTTACAATCTTC+AGG | + | chr1_1:11156019-11156038 | None:intergenic | 20.0% |
| !!! | TGTTTTGAATCATTAATCAA+TGG | + | chr1_1:11156103-11156122 | None:intergenic | 20.0% |
| !! | AATAGAACAGTTATAGATAA+TGG | + | chr1_1:11156313-11156332 | None:intergenic | 20.0% |
| !!! | TTTTTGTTTGTTTTGATCTT+AGG | + | chr1_1:11156699-11156718 | None:intergenic | 20.0% |
| !!! | TAGGCTAATTTATTTTAACT+CGG | - | chr1_1:11157000-11157019 | Msa0007800:intron | 20.0% |
| !!! | TTCCCAATAAAATGATTTTT+TGG | - | chr1_1:11157257-11157276 | Msa0007800:intron | 20.0% |
| !! | TATTATTGCATGATAATTGA+TGG | - | chr1_1:11157581-11157600 | Msa0007800:intron | 20.0% |
| !! | TAATCCAAAAAACAAAAGTA+AGG | + | chr1_1:11157739-11157758 | None:intergenic | 20.0% |
| !!! | TTTTTTGGATTATAGATAGA+AGG | - | chr1_1:11157747-11157766 | Msa0007800:CDS | 20.0% |
| !!! | GATATAATTTTTCTAACTTC+AGG | - | chr1_1:11157912-11157931 | Msa0007800:intron | 20.0% |
| !!! | TGTTATTTTTACATGTTACA+AGG | - | chr1_1:11158141-11158160 | Msa0007800:intron | 20.0% |
| !!! | TGATTAATTGTATGCATTTT+TGG | - | chr1_1:11158183-11158202 | Msa0007800:intron | 20.0% |
| !! | AGTATCATATAAACTGAAAT+TGG | + | chr1_1:11158399-11158418 | None:intergenic | 20.0% |
| !!! | ATTTTAAATTGCAGAGATAT+GGG | - | chr1_1:11158436-11158455 | Msa0007800:intron | 20.0% |
| !!! | TTTTTGTATTTGTCTCATTT+TGG | - | chr1_1:11158539-11158558 | Msa0007800:intron | 20.0% |
| !!! | TTTTGTATTTGTCTCATTTT+GGG | - | chr1_1:11158540-11158559 | Msa0007800:intron | 20.0% |
| !! | TTTAGTCAAAAGACATAATA+CGG | + | chr1_1:11158854-11158873 | None:intergenic | 20.0% |
| ! | AAGTCCAATTTCTCAATTAA+CGG | - | chr1_1:11154189-11154208 | Msa0007800:CDS | 25.0% |
| !! | TTTCTTTTGTATGATTTTCG+TGG | - | chr1_1:11154324-11154343 | Msa0007800:CDS | 25.0% |
| !! | TTATTGTAGCATGGTTATTT+TGG | - | chr1_1:11154859-11154878 | Msa0007800:CDS | 25.0% |
| !!! | TATTGTAGCATGGTTATTTT+GGG | - | chr1_1:11154860-11154879 | Msa0007800:CDS | 25.0% |
| ! | TATACAACGAGTTAAATAAG+AGG | + | chr1_1:11155006-11155025 | None:intergenic | 25.0% |
| ! | AAATTTCTTAACATGTGTTG+TGG | - | chr1_1:11155189-11155208 | Msa0007800:intron | 25.0% |
| ! | AGTAGACTGAATTTCATTAT+TGG | - | chr1_1:11155214-11155233 | Msa0007800:intron | 25.0% |
| !! | TCATTATTGGTTGTTTAATC+AGG | - | chr1_1:11155227-11155246 | Msa0007800:intron | 25.0% |
| !! | CATTATTGGTTGTTTAATCA+GGG | - | chr1_1:11155228-11155247 | Msa0007800:intron | 25.0% |
| ! | TACTGTAAGTACTTTAACTA+TGG | - | chr1_1:11155287-11155306 | Msa0007800:CDS | 25.0% |
| ! | TGTCAATGAATAATTAGAGA+AGG | + | chr1_1:11155359-11155378 | None:intergenic | 25.0% |
| ! | TTCTCTAATTATTCATTGAC+AGG | - | chr1_1:11155358-11155377 | Msa0007800:intron | 25.0% |
| ! | TAATTATTCATTGACAGGAA+TGG | - | chr1_1:11155363-11155382 | Msa0007800:intron | 25.0% |
| !! | ATTTTCATGTTTTGTCTCAT+GGG | - | chr1_1:11155764-11155783 | Msa0007800:intron | 25.0% |
| ! | CGGTGAGATTTAAATTTAAA+TGG | - | chr1_1:11155985-11156004 | Msa0007800:intron | 25.0% |
| !! | CTTTAAGAGGTTTCATTAAT+GGG | - | chr1_1:11156253-11156272 | Msa0007800:intron | 25.0% |
| !!! | TTATTTTACTGGAAATGTGT+CGG | + | chr1_1:11156622-11156641 | None:intergenic | 25.0% |
| !!! | ATCATTTAGTTCTCTGTTAT+TGG | - | chr1_1:11156664-11156683 | Msa0007800:intron | 25.0% |
| !! | TTTTGTAGCTGAATTTTTCT+TGG | - | chr1_1:11156733-11156752 | Msa0007800:intron | 25.0% |
| !!! | TATAAGTTTTTGAGCTAATG+TGG | + | chr1_1:11157104-11157123 | None:intergenic | 25.0% |
| !!! | ATGTCTTTGATTTGTCAAAT+TGG | - | chr1_1:11157397-11157416 | Msa0007800:intron | 25.0% |
| !!! | AATTGGCTGTTTTAATCATA+TGG | - | chr1_1:11157414-11157433 | Msa0007800:intron | 25.0% |
| ! | TAACCCATTTATAAGATCAT+TGG | - | chr1_1:11157654-11157673 | Msa0007800:intron | 25.0% |
| ! | CTTCCAATGATCTTATAAAT+GGG | + | chr1_1:11157660-11157679 | None:intergenic | 25.0% |
| ! | ACTTCCAATGATCTTATAAA+TGG | + | chr1_1:11157661-11157680 | None:intergenic | 25.0% |
| !!! | AATGCCTTACTTTTGTTTTT+TGG | - | chr1_1:11157732-11157751 | Msa0007800:CDS | 25.0% |
| ! | ACTTACATCAAATATCATAC+CGG | + | chr1_1:11157861-11157880 | None:intergenic | 25.0% |
| !!! | CTGTTTCTTTAGTTTTTGAT+TGG | - | chr1_1:11157883-11157902 | Msa0007800:intron | 25.0% |
| ! | ACTCAAGGATATTGATAAAT+TGG | - | chr1_1:11157960-11157979 | Msa0007800:intron | 25.0% |
| !! | TTTCATTAATGGTTTCAAGT+AGG | - | chr1_1:11158059-11158078 | Msa0007800:intron | 25.0% |
| ! | AAAACTGTTGTCAATATTTC+TGG | - | chr1_1:11158224-11158243 | Msa0007800:intron | 25.0% |
| !! | GATTTTAAATTGCAGAGATA+TGG | - | chr1_1:11158435-11158454 | Msa0007800:intron | 25.0% |
| TACACCGTTAATTGAGAAAT+TGG | + | chr1_1:11154196-11154215 | None:intergenic | 30.0% | |
| CAGTTTATGAACTAAATTGC+TGG | + | chr1_1:11154442-11154461 | None:intergenic | 30.0% | |
| !!! | AAATTTGAAGCTAGCTTTTG+TGG | - | chr1_1:11154782-11154801 | Msa0007800:intron | 30.0% |
| AATGACTGTTGTGTATGAAT+GGG | + | chr1_1:11154841-11154860 | None:intergenic | 30.0% | |
| TAATGACTGTTGTGTATGAA+TGG | + | chr1_1:11154842-11154861 | None:intergenic | 30.0% | |
| !!! | TCGTTGTATATTTTTGGTTC+AGG | - | chr1_1:11155016-11155035 | Msa0007800:CDS | 30.0% |
| !!! | ATTTTTGGTTCAGGTTACAT+TGG | - | chr1_1:11155025-11155044 | Msa0007800:CDS | 30.0% |
| ! | CACTGATGTTAATTTTGTCT+TGG | - | chr1_1:11155079-11155098 | Msa0007800:intron | 30.0% |
| ! | GTTAATTTTGTCTTGGATGA+TGG | - | chr1_1:11155086-11155105 | Msa0007800:intron | 30.0% |
| !! | AAATGAGAGTTTTGACACAA+AGG | - | chr1_1:11155252-11155271 | Msa0007800:intron | 30.0% |
| ATGATATAGATTTACGAGTC+TGG | - | chr1_1:11155316-11155335 | Msa0007800:CDS | 30.0% | |
| TGATATAGATTTACGAGTCT+GGG | - | chr1_1:11155317-11155336 | Msa0007800:CDS | 30.0% | |
| CTGAAAGCAAATAAACAACA+TGG | + | chr1_1:11155504-11155523 | None:intergenic | 30.0% | |
| TTTATGTGATGATACGAAAG+AGG | + | chr1_1:11155624-11155643 | None:intergenic | 30.0% | |
| ATATATGGGTGATTGTGTAT+AGG | - | chr1_1:11155717-11155736 | Msa0007800:intron | 30.0% | |
| ! | GATTTTCATGTTTTGTCTCA+TGG | - | chr1_1:11155763-11155782 | Msa0007800:intron | 30.0% |
| ACCATAACCCATAATTTGAA+CGG | + | chr1_1:11155791-11155810 | None:intergenic | 30.0% | |
| TGTGTAACTGAATGCTTAAT+AGG | - | chr1_1:11155938-11155957 | Msa0007800:intron | 30.0% | |
| ! | TGATATGCATTTTGTGTGAT+TGG | - | chr1_1:11156193-11156212 | Msa0007800:intron | 30.0% |
| !! | GCTTTAAGAGGTTTCATTAA+TGG | - | chr1_1:11156252-11156271 | Msa0007800:intron | 30.0% |
| ! | TTCATTAATGGGTGTTATGT+AGG | - | chr1_1:11156264-11156283 | Msa0007800:intron | 30.0% |
| !! | CTTTTGCTGTCTATTCTTAT+TGG | - | chr1_1:11156364-11156383 | Msa0007800:intron | 30.0% |
| AATTTACACCTTACAGAACA+TGG | - | chr1_1:11156885-11156904 | Msa0007800:intron | 30.0% | |
| ATTTACACCTTACAGAACAT+GGG | - | chr1_1:11156886-11156905 | Msa0007800:intron | 30.0% | |
| TAAATCGTTTGTCTAATAGC+TGG | - | chr1_1:11157122-11157141 | Msa0007800:intron | 30.0% | |
| AGTAAAGACAATCTTATACC+TGG | - | chr1_1:11157178-11157197 | Msa0007800:intron | 30.0% | |
| ACAATCTTATACCTGGTTAT+GGG | - | chr1_1:11157185-11157204 | Msa0007800:intron | 30.0% | |
| TGCTTTGTAATTCAACAAAC+AGG | + | chr1_1:11157302-11157321 | None:intergenic | 30.0% | |
| CAAAGCATGATATTTAGTAG+TGG | - | chr1_1:11157315-11157334 | Msa0007800:intron | 30.0% | |
| TCATATTTGTGATGTTTCAC+AGG | - | chr1_1:11157442-11157461 | Msa0007800:intron | 30.0% | |
| ATCTCATCAAAATTTGTCAC+GGG | + | chr1_1:11157468-11157487 | None:intergenic | 30.0% | |
| GATCTCATCAAAATTTGTCA+CGG | + | chr1_1:11157469-11157488 | None:intergenic | 30.0% | |
| AAATGTTTCAAATGGATCTC+AGG | - | chr1_1:11157821-11157840 | Msa0007800:intron | 30.0% | |
| ! | TATGTACAATATAGCACTGA+TGG | - | chr1_1:11157937-11157956 | Msa0007800:intron | 30.0% |
| ! | AATGTTTTCACCAAGTACAA+GGG | + | chr1_1:11158096-11158115 | None:intergenic | 30.0% |
| ! | AAATGTTTTCACCAAGTACA+AGG | + | chr1_1:11158097-11158116 | None:intergenic | 30.0% |
| !! | GAAATGTTGGTTTAAGATGA+TGG | + | chr1_1:11158254-11158273 | None:intergenic | 30.0% |
| TAACGGAAAAGATGAAATGT+TGG | + | chr1_1:11158267-11158286 | None:intergenic | 30.0% | |
| CTTGAAGTGAATGATTGTAA+CGG | + | chr1_1:11158284-11158303 | None:intergenic | 30.0% | |
| ATATCAAGCAAGTTTGTAGT+GGG | + | chr1_1:11158671-11158690 | None:intergenic | 30.0% | |
| AATATCAAGCAAGTTTGTAG+TGG | + | chr1_1:11158672-11158691 | None:intergenic | 30.0% | |
| TCATCTAAAGAATATAGCTG+AGG | - | chr1_1:11158695-11158714 | Msa0007800:intron | 30.0% | |
| TAAAGAATATAGCTGAGGAT+CGG | - | chr1_1:11158700-11158719 | Msa0007800:intron | 30.0% | |
| !! | ATATTGATGTTGGTCTGTTT+TGG | - | chr1_1:11158740-11158759 | Msa0007800:intron | 30.0% |
| !!! | AGGTTGATGTAGATATTTTC+TGG | - | chr1_1:11158768-11158787 | Msa0007800:intron | 30.0% |
| AAGATAGCGCTTACTTTAGT+CGG | + | chr1_1:11154017-11154036 | None:intergenic | 35.0% | |
| ATAAGTGAAGCTTCTCATTC+TGG | - | chr1_1:11154159-11154178 | Msa0007800:CDS | 35.0% | |
| !! | TATCCGTATTGATTTGTCAG+TGG | - | chr1_1:11154574-11154593 | Msa0007800:intron | 35.0% |
| !! | ATCCGTATTGATTTGTCAGT+GGG | - | chr1_1:11154575-11154594 | Msa0007800:intron | 35.0% |
| AACCCACTGACAAATCAATA+CGG | + | chr1_1:11154580-11154599 | None:intergenic | 35.0% | |
| GTTGTTAGGACTAAATTGAC+AGG | + | chr1_1:11154643-11154662 | None:intergenic | 35.0% | |
| CAACAGTCATTATTGTAGCA+TGG | - | chr1_1:11154850-11154869 | Msa0007800:CDS | 35.0% | |
| !! | GAGTTTTGACACAAAGGAAA+TGG | - | chr1_1:11155258-11155277 | Msa0007800:intron | 35.0% |
| GATATAGATTTACGAGTCTG+GGG | - | chr1_1:11155318-11155337 | Msa0007800:CDS | 35.0% | |
| GCATGTATGTTCGTGTTTAT+GGG | - | chr1_1:11155385-11155404 | Msa0007800:intron | 35.0% | |
| ! | TACACCTTGAAAGCTTTTCA+AGG | + | chr1_1:11155412-11155431 | None:intergenic | 35.0% |
| TGAAAAGCTTTCAAGGTGTA+AGG | - | chr1_1:11155412-11155431 | Msa0007800:intron | 35.0% | |
| AAGAGAAAATCAAACCATGC+AGG | + | chr1_1:11155534-11155553 | None:intergenic | 35.0% | |
| TTCCTTGAACTAGTGACAAA+AGG | + | chr1_1:11155582-11155601 | None:intergenic | 35.0% | |
| AAACATGAAAATCCAACCCT+CGG | + | chr1_1:11155756-11155775 | None:intergenic | 35.0% | |
| ! | TCCGTTCAAATTATGGGTTA+TGG | - | chr1_1:11155787-11155806 | Msa0007800:intron | 35.0% |
| !! | ATTTGTTGCTTTCTCAGGAA+GGG | - | chr1_1:11155891-11155910 | Msa0007800:intron | 35.0% |
| AATGCTTAATAGGAGCAAGT+TGG | - | chr1_1:11155948-11155967 | Msa0007800:intron | 35.0% | |
| ! | TTAATAGGAGCAAGTTGGAA+TGG | - | chr1_1:11155953-11155972 | Msa0007800:intron | 35.0% |
| ! | ATTTTACAATCTTCAGGCTC+TGG | + | chr1_1:11156013-11156032 | None:intergenic | 35.0% |
| AACTGTAGGATATGTCTTGT+CGG | + | chr1_1:11156063-11156082 | None:intergenic | 35.0% | |
| ACAAAGCAAAAGCTCAACAT+TGG | + | chr1_1:11156143-11156162 | None:intergenic | 35.0% | |
| ! | AATGTTGAGCTTTTGCTTTG+TGG | - | chr1_1:11156142-11156161 | Msa0007800:intron | 35.0% |
| ! | TATGCATTTTGTGTGATTGG+TGG | - | chr1_1:11156196-11156215 | Msa0007800:intron | 35.0% |
| ! | TTGCCTCTAGTGTATACTTT+TGG | - | chr1_1:11156227-11156246 | Msa0007800:intron | 35.0% |
| !! | ATACTTTTGGCTGCTTTAAG+AGG | - | chr1_1:11156240-11156259 | Msa0007800:intron | 35.0% |
| TAGTGCATAGAGAAGAAAAG+AGG | - | chr1_1:11156500-11156519 | Msa0007800:intron | 35.0% | |
| AAGAAAAGAGGAGAGAACAA+AGG | - | chr1_1:11156512-11156531 | Msa0007800:intron | 35.0% | |
| AGAAAAGAGGAGAGAACAAA+GGG | - | chr1_1:11156513-11156532 | Msa0007800:intron | 35.0% | |
| TTTACACCTTACAGAACATG+GGG | - | chr1_1:11156887-11156906 | Msa0007800:intron | 35.0% | |
| CAAAAACATAGTCTGAAAGC+AGG | + | chr1_1:11156933-11156952 | None:intergenic | 35.0% | |
| TTCTGTCAATGAACATCAAC+TGG | - | chr1_1:11157030-11157049 | Msa0007800:intron | 35.0% | |
| ! | GTTTTTGCCTAATGTTACTC+TGG | - | chr1_1:11157062-11157081 | Msa0007800:intron | 35.0% |
| TCACAAACCAGAGTAACATT+AGG | + | chr1_1:11157072-11157091 | None:intergenic | 35.0% | |
| GACAATCTTATACCTGGTTA+TGG | - | chr1_1:11157184-11157203 | Msa0007800:intron | 35.0% | |
| ATGCAGTCGATAAAGTGAAA+CGG | + | chr1_1:11157492-11157511 | None:intergenic | 35.0% | |
| !! | TGTTTACCTTTAGTTTGCTG+CGG | + | chr1_1:11157527-11157546 | None:intergenic | 35.0% |
| TGGATACTGCATAAACTTTC+TGG | - | chr1_1:11157607-11157626 | Msa0007800:intron | 35.0% | |
| TTCATAGACGAGTTTGATGA+AGG | + | chr1_1:11157789-11157808 | None:intergenic | 35.0% | |
| ! | CCATTTGAAACATTTCTGAC+AGG | + | chr1_1:11157816-11157835 | None:intergenic | 35.0% |
| CCTGTCAGAAATGTTTCAAA+TGG | - | chr1_1:11157813-11157832 | Msa0007800:intron | 35.0% | |
| TATCATACCGGATTTGATGA+TGG | + | chr1_1:11157849-11157868 | None:intergenic | 35.0% | |
| CAATCAAAGCAAATTGAACG+TGG | - | chr1_1:11158311-11158330 | Msa0007800:intron | 35.0% | |
| ! | TTTGTAGTGGGAATCATCTA+TGG | + | chr1_1:11158659-11158678 | None:intergenic | 35.0% |
| AAAGAATATAGCTGAGGATC+GGG | - | chr1_1:11158701-11158720 | Msa0007800:intron | 35.0% | |
| ! | GTGAGATCATTTAAAGTGCT+CGG | + | chr1_1:11158880-11158899 | None:intergenic | 35.0% |
| TTGAAGAGTCGTGATTCTCA+GGG | - | chr1_1:11154111-11154130 | Msa0007800:three_prime_UTR | 40.0% | |
| TGATTCTCAGGGTTTGATTC+CGG | - | chr1_1:11154122-11154141 | Msa0007800:exon | 40.0% | |
| GTGTACATGCTTCATAGCTA+AGG | - | chr1_1:11154607-11154626 | Msa0007800:intron | 40.0% | |
| ! | AGTCCTAACAACTTGATAGC+AGG | - | chr1_1:11154651-11154670 | Msa0007800:intron | 40.0% |
| ! | GTCCTAACAACTTGATAGCA+GGG | - | chr1_1:11154652-11154671 | Msa0007800:intron | 40.0% |
| ! | TTGGTTCAGGTTACATTGGT+TGG | - | chr1_1:11155029-11155048 | Msa0007800:CDS | 40.0% |
| ! | TCAGGTTACATTGGTTGGAA+TGG | - | chr1_1:11155034-11155053 | Msa0007800:CDS | 40.0% |
| TGGAATGGTGTATGAGAAAG+TGG | - | chr1_1:11155049-11155068 | Msa0007800:intron | 40.0% | |
| !! | TTTGTCTTGGATGATGGAAC+TGG | - | chr1_1:11155092-11155111 | Msa0007800:intron | 40.0% |
| GGCATGTATGTTCGTGTTTA+TGG | - | chr1_1:11155384-11155403 | Msa0007800:intron | 40.0% | |
| ! | AGCCTTTTGTCACTAGTTCA+AGG | - | chr1_1:11155577-11155596 | Msa0007800:intron | 40.0% |
| GTTCAAGGAAATTACACACG+AGG | - | chr1_1:11155592-11155611 | Msa0007800:intron | 40.0% | |
| TTTGTCGATATCCAACCTCT+CGG | - | chr1_1:11155684-11155703 | Msa0007800:intron | 40.0% | |
| TCGGGTGCTTGATCATATAT+GGG | - | chr1_1:11155703-11155722 | Msa0007800:intron | 40.0% | |
| AACATGAAAATCCAACCCTC+GGG | + | chr1_1:11155755-11155774 | None:intergenic | 40.0% | |
| TCATGGGTCCGTTCAAATTA+TGG | - | chr1_1:11155780-11155799 | Msa0007800:intron | 40.0% | |
| CATGGGTCCGTTCAAATTAT+GGG | - | chr1_1:11155781-11155800 | Msa0007800:intron | 40.0% | |
| ATCAGAGTTGTATCCACAGA+AGG | + | chr1_1:11155873-11155892 | None:intergenic | 40.0% | |
| !! | CTCTGATTTGTTGCTTTCTC+AGG | - | chr1_1:11155886-11155905 | Msa0007800:intron | 40.0% |
| !! | GATTTGTTGCTTTCTCAGGA+AGG | - | chr1_1:11155890-11155909 | Msa0007800:intron | 40.0% |
| !! | TTTGTTGCTTTCTCAGGAAG+GGG | - | chr1_1:11155892-11155911 | Msa0007800:intron | 40.0% |
| ! | ATCATTTTACAGTCCCCTGA+TGG | - | chr1_1:11156031-11156050 | Msa0007800:intron | 40.0% |
| ! | CATTGGAAGCATACACTAGA+TGG | + | chr1_1:11156126-11156145 | None:intergenic | 40.0% |
| ! | CAGCCAAAAGTATACACTAG+AGG | + | chr1_1:11156233-11156252 | None:intergenic | 40.0% |
| GTCTGAAAGCAGGCTAAATA+AGG | + | chr1_1:11156923-11156942 | None:intergenic | 40.0% | |
| ! | ACCCAAGTTTAGAGTCAACT+AGG | - | chr1_1:11156981-11157000 | Msa0007800:intron | 40.0% |
| ! | GCCTAGTTGACTCTAAACTT+GGG | + | chr1_1:11156985-11157004 | None:intergenic | 40.0% |
| ! | AGCCTAGTTGACTCTAAACT+TGG | + | chr1_1:11156986-11157005 | None:intergenic | 40.0% |
| TGTCCTTGTTACATTTGTGG+AGG | - | chr1_1:11157208-11157227 | Msa0007800:intron | 40.0% | |
| CTACCTCCACAAATGTAACA+AGG | + | chr1_1:11157214-11157233 | None:intergenic | 40.0% | |
| TGAGCACGCTAGTATATGTA+AGG | + | chr1_1:11157361-11157380 | None:intergenic | 40.0% | |
| TGCAGTCGATAAAGTGAAAC+GGG | + | chr1_1:11157491-11157510 | None:intergenic | 40.0% | |
| ! | TGCATGATAATTGATGGCAG+TGG | - | chr1_1:11157587-11157606 | Msa0007800:intron | 40.0% |
| !! | ATATAGCACTGATGGACTCA+AGG | - | chr1_1:11157945-11157964 | Msa0007800:intron | 40.0% |
| AATGCTGCTGCAGATAGTTA+AGG | + | chr1_1:11157987-11158006 | None:intergenic | 40.0% | |
| ! | GGTTTCAAGTAGGATGACTA+AGG | - | chr1_1:11158069-11158088 | Msa0007800:intron | 40.0% |
| CTGGCATTATGAACAGCATT+GGG | + | chr1_1:11158592-11158611 | None:intergenic | 40.0% | |
| CAGACCAACATCAATATCAC+CGG | + | chr1_1:11158737-11158756 | None:intergenic | 40.0% | |
| !!! | GTTGGTCTGTTTTGGTTCAT+AGG | - | chr1_1:11158748-11158767 | Msa0007800:intron | 40.0% |
| TCTCTCTCTCTCTCTCTCTA+GGG | - | chr1_1:11153897-11153916 | Msa0007800:three_prime_UTR | 45.0% | |
| GTTGAAGAGTCGTGATTCTC+AGG | - | chr1_1:11154110-11154129 | Msa0007800:three_prime_UTR | 45.0% | |
| TCAGGGTTTGATTCCGGTTA+CGG | - | chr1_1:11154128-11154147 | Msa0007800:exon | 45.0% | |
| CTTATCTGCTTCACCGTAAC+CGG | + | chr1_1:11154144-11154163 | None:intergenic | 45.0% | |
| ! | GTCCCTGCTATCAAGTTGTT+AGG | + | chr1_1:11154657-11154676 | None:intergenic | 45.0% |
| TGGTGTATGAGAAAGTGGAG+AGG | - | chr1_1:11155054-11155073 | Msa0007800:intron | 45.0% | |
| !! | TCTTGGATGATGGAACTGGA+CGG | - | chr1_1:11155096-11155115 | Msa0007800:intron | 45.0% |
| !! | CCTGCAGAAAGTACCATCTT+CGG | + | chr1_1:11155130-11155149 | None:intergenic | 45.0% |
| GGGTCCTTGAAAAGCTTTCA+AGG | - | chr1_1:11155405-11155424 | Msa0007800:intron | 45.0% | |
| !! | CTTTCAGTTTGTTGCCTGCA+TGG | - | chr1_1:11155517-11155536 | Msa0007800:intron | 45.0% |
| TTGTCGATATCCAACCTCTC+GGG | - | chr1_1:11155685-11155704 | Msa0007800:intron | 45.0% | |
| TATATGATCAAGCACCCGAG+AGG | + | chr1_1:11155702-11155721 | None:intergenic | 45.0% | |
| CTCGGGTGCTTGATCATATA+TGG | - | chr1_1:11155702-11155721 | Msa0007800:intron | 45.0% | |
| TAGGTGCAGATGAGAGACAA+GGG | + | chr1_1:11155842-11155861 | None:intergenic | 45.0% | |
| TTAGGTGCAGATGAGAGACA+AGG | + | chr1_1:11155843-11155862 | None:intergenic | 45.0% | |
| ACCTAAGTGAGATCCTTCTG+TGG | - | chr1_1:11155857-11155876 | Msa0007800:intron | 45.0% | |
| TCCACAGAAGGATCTCACTT+AGG | + | chr1_1:11155861-11155880 | None:intergenic | 45.0% | |
| !! | TTGTTGCTTTCTCAGGAAGG+GGG | - | chr1_1:11155893-11155912 | Msa0007800:intron | 45.0% |
| TGTGGTTTGATCACTGAGCT+TGG | - | chr1_1:11156160-11156179 | Msa0007800:intron | 45.0% | |
| GTGGTTTGATCACTGAGCTT+GGG | - | chr1_1:11156161-11156180 | Msa0007800:intron | 45.0% | |
| TGTCACAAGACATAACAGGC+AGG | + | chr1_1:11156441-11156460 | None:intergenic | 45.0% | |
| GCACTGTCACAAGACATAAC+AGG | + | chr1_1:11156445-11156464 | None:intergenic | 45.0% | |
| AAAGGGAATGAAGCTCTGCT+AGG | - | chr1_1:11156530-11156549 | Msa0007800:intron | 45.0% | |
| !! | TGTGTCGGCTGTCAGATAAT+AGG | + | chr1_1:11156607-11156626 | None:intergenic | 45.0% |
| CATCATCCCCATGTTCTGTA+AGG | + | chr1_1:11156896-11156915 | None:intergenic | 45.0% | |
| TAACAAGGACACCCATAACC+AGG | + | chr1_1:11157199-11157218 | None:intergenic | 45.0% | |
| GGGTGTCCTTGTTACATTTG+TGG | - | chr1_1:11157205-11157224 | Msa0007800:intron | 45.0% | |
| !! | TTACCTTTAGTTTGCTGCGG+AGG | + | chr1_1:11157524-11157543 | None:intergenic | 45.0% |
| TCAGGCACCATCATCAAATC+CGG | - | chr1_1:11157839-11157858 | Msa0007800:intron | 45.0% | |
| TGACTAAGGACCCTTGTACT+TGG | - | chr1_1:11158083-11158102 | Msa0007800:intron | 45.0% | |
| ACTCACATGATCTTGTCCAC+TGG | + | chr1_1:11158499-11158518 | None:intergenic | 45.0% | |
| CCTGGCATTATGAACAGCAT+TGG | + | chr1_1:11158593-11158612 | None:intergenic | 45.0% | |
| CCAATGCTGTTCATAATGCC+AGG | - | chr1_1:11158590-11158609 | Msa0007800:intron | 45.0% | |
| ! | CTGAAGGCTACTTTAGAGGA+CGG | - | chr1_1:11158619-11158638 | Msa0007800:CDS | 45.0% |
| ! | GTAGTGGGAATCATCTATGG+TGG | + | chr1_1:11158656-11158675 | None:intergenic | 45.0% |
| TCAATATCACCGGTGGTTCT+TGG | + | chr1_1:11158727-11158746 | None:intergenic | 45.0% | |
| ACCACCGGTGATATTGATGT+TGG | - | chr1_1:11158730-11158749 | Msa0007800:intron | 45.0% | |
| ACCAACATCAATATCACCGG+TGG | + | chr1_1:11158734-11158753 | None:intergenic | 45.0% | |
| !! | TTTAATTCAAAAAAAAAAAA+AGG | + | chr1_1:11154243-11154262 | None:intergenic | 5.0% |
| !! | TAATAAAATATAAACAAAAT+GGG | + | chr1_1:11155475-11155494 | None:intergenic | 5.0% |
| !! | TTAATAAAATATAAACAAAA+TGG | + | chr1_1:11155476-11155495 | None:intergenic | 5.0% |
| !! | TAAACTATATAATTATAATT+TGG | - | chr1_1:11155640-11155659 | Msa0007800:intron | 5.0% |
| CTCTCTCTCTCTCTCTCTCT+AGG | - | chr1_1:11153884-11153903 | Msa0007800:three_prime_UTR | 50.0% | |
| ! | AGAAGAATCGTTGGGTTGCG+AGG | + | chr1_1:11153988-11154007 | None:intergenic | 50.0% |
| GCAACCCAACGATTCTTCTC+CGG | - | chr1_1:11153989-11154008 | Msa0007800:three_prime_UTR | 50.0% | |
| GACGGATCAAATGCCGAAGA+TGG | - | chr1_1:11155114-11155133 | Msa0007800:intron | 50.0% | |
| CCGAAGATGGTACTTTCTGC+AGG | - | chr1_1:11155127-11155146 | Msa0007800:intron | 50.0% | |
| AACTTGTCGCCTTCTCTGTC+AGG | - | chr1_1:11155436-11155455 | Msa0007800:intron | 50.0% | |
| GCAAACATGCCTGACAGAGA+AGG | + | chr1_1:11155448-11155467 | None:intergenic | 50.0% | |
| TAGGCAATTGCTTTGTCCCG+AGG | - | chr1_1:11155736-11155755 | Msa0007800:intron | 50.0% | |
| AGGCAATTGCTTTGTCCCGA+GGG | - | chr1_1:11155737-11155756 | Msa0007800:intron | 50.0% | |
| AATTGCTTTGTCCCGAGGGT+TGG | - | chr1_1:11155741-11155760 | Msa0007800:intron | 50.0% | |
| ! | GAGCAAGTTGGAATGGTGCT+GGG | - | chr1_1:11155960-11155979 | Msa0007800:intron | 50.0% |
| ! | AGCAAGTTGGAATGGTGCTG+GGG | - | chr1_1:11155961-11155980 | Msa0007800:intron | 50.0% |
| !! | TTGTCGGTGTCATCCATCAG+GGG | + | chr1_1:11156047-11156066 | None:intergenic | 50.0% |
| !! | CTTGTCGGTGTCATCCATCA+GGG | + | chr1_1:11156048-11156067 | None:intergenic | 50.0% |
| !! | TCTTGTCGGTGTCATCCATC+AGG | + | chr1_1:11156049-11156068 | None:intergenic | 50.0% |
| CAAGTCTGCAGCTGAACTGT+AGG | + | chr1_1:11156077-11156096 | None:intergenic | 50.0% | |
| AAGAGAGCTCAAGCTTCCAG+TGG | - | chr1_1:11158480-11158499 | Msa0007800:intron | 50.0% | |
| TAATGCCAGGTTGTCGCTGA+AGG | - | chr1_1:11158603-11158622 | Msa0007800:CDS | 50.0% | |
| ! | GTCGCTGAAGGCTACTTTAG+AGG | - | chr1_1:11158615-11158634 | Msa0007800:CDS | 50.0% |
| ! | GGCTACTTTAGAGGACGGTA+CGG | - | chr1_1:11158624-11158643 | Msa0007800:CDS | 50.0% |
| !! | GGAGGCATCGAATTGGGAGT+TGG | + | chr1_1:11153937-11153956 | None:intergenic | 55.0% |
| !! | GGCGTTGGAGGCATCGAATT+GGG | + | chr1_1:11153943-11153962 | None:intergenic | 55.0% |
| !! | AGGCGTTGGAGGCATCGAAT+TGG | + | chr1_1:11153944-11153963 | None:intergenic | 55.0% |
| ! | GGTGCCGGAGAAGAATCGTT+GGG | + | chr1_1:11153996-11154015 | None:intergenic | 55.0% |
| GCGCTTACTTTAGTCGGTGC+CGG | + | chr1_1:11154011-11154030 | None:intergenic | 55.0% | |
| TGATCAAGCACCCGAGAGGT+TGG | + | chr1_1:11155698-11155717 | None:intergenic | 55.0% | |
| TTGCTTTCTCAGGAAGGGGG+TGG | - | chr1_1:11155896-11155915 | Msa0007800:intron | 55.0% | |
| TGCTTTCTCAGGAAGGGGGT+GGG | - | chr1_1:11155897-11155916 | Msa0007800:intron | 55.0% | |
| !! | GAAGGGGGTGGGTTGTCAAA+GGG | - | chr1_1:11155908-11155927 | Msa0007800:intron | 55.0% |
| ! | GGAGCAAGTTGGAATGGTGC+TGG | - | chr1_1:11155959-11155978 | Msa0007800:intron | 55.0% |
| ! | GCAAGTTGGAATGGTGCTGG+GGG | - | chr1_1:11155962-11155981 | Msa0007800:intron | 55.0% |
| !! | CCTTTAGTTTGCTGCGGAGG+TGG | + | chr1_1:11157521-11157540 | None:intergenic | 55.0% |
| CCACCTCCGCAGCAAACTAA+AGG | - | chr1_1:11157518-11157537 | Msa0007800:intron | 55.0% | |
| AGTAGCCTTCAGCGACAACC+TGG | + | chr1_1:11158611-11158630 | None:intergenic | 55.0% | |
| GATGCCTCCAACGCCTTCTC+CGG | - | chr1_1:11153948-11153967 | Msa0007800:three_prime_UTR | 60.0% | |
| ! | CGGTGCCGGAGAAGAATCGT+TGG | + | chr1_1:11153997-11154016 | None:intergenic | 60.0% |
| !! | GGAAGGGGGTGGGTTGTCAA+AGG | - | chr1_1:11155907-11155926 | Msa0007800:intron | 60.0% |
| ! | AGTTGGAATGGTGCTGGGGG+CGG | - | chr1_1:11155965-11155984 | Msa0007800:intron | 60.0% |
| AGGATCGGGCCAAGAACCAC+CGG | - | chr1_1:11158715-11158734 | Msa0007800:intron | 60.0% | |
| CATGAATCCGCCGCCGGAGA+AGG | + | chr1_1:11153964-11153983 | None:intergenic | 65.0% | |
| CGAGGACATGAATCCGCCGC+CGG | + | chr1_1:11153970-11153989 | None:intergenic | 65.0% | |
| GCCTCCAACGCCTTCTCCGG+CGG | - | chr1_1:11153951-11153970 | Msa0007800:three_prime_UTR | 70.0% | |
| TCCAACGCCTTCTCCGGCGG+CGG | - | chr1_1:11153954-11153973 | Msa0007800:three_prime_UTR | 70.0% | |
| !! | GCCGCCGGAGAAGGCGTTGG+AGG | + | chr1_1:11153955-11153974 | None:intergenic | 75.0% |
| ! | TCCGCCGCCGGAGAAGGCGT+TGG | + | chr1_1:11153958-11153977 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 11153883 | 11158941 | 11153883 | ID=Msa0007800;Name=Msa0007800 |
| chr1_1 | mRNA | 11153883 | 11158941 | 11153883 | ID=Msa0007800-mRNA-1;Parent=Msa0007800;Name=Msa0007800-mRNA-1;_AED=0.08;_eAED=0.08;_QI=44|0.88|0.9|1|0.88|1|10|254|249 |
| chr1_1 | exon | 11153883 | 11154212 | 11153883 | ID=Msa0007800-mRNA-1:exon:4129;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11154312 | 11154374 | 11154312 | ID=Msa0007800-mRNA-1:exon:4128;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11154811 | 11154890 | 11154811 | ID=Msa0007800-mRNA-1:exon:4127;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11154964 | 11155062 | 11154964 | ID=Msa0007800-mRNA-1:exon:4126;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11155285 | 11155360 | 11155285 | ID=Msa0007800-mRNA-1:exon:4125;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11157436 | 11157444 | 11157436 | ID=Msa0007800-mRNA-1:exon:4124;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11157534 | 11157575 | 11157534 | ID=Msa0007800-mRNA-1:exon:4123;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11157689 | 11157786 | 11157689 | ID=Msa0007800-mRNA-1:exon:4122;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11158597 | 11158707 | 11158597 | ID=Msa0007800-mRNA-1:exon:4121;Parent=Msa0007800-mRNA-1 |
| chr1_1 | exon | 11158802 | 11158941 | 11158802 | ID=Msa0007800-mRNA-1:exon:4120;Parent=Msa0007800-mRNA-1 |
| chr1_1 | five_prime_UTR | 11158898 | 11158941 | 11158898 | ID=Msa0007800-mRNA-1:five_prime_utr;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11158802 | 11158897 | 11158802 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11158597 | 11158707 | 11158597 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11157689 | 11157786 | 11157689 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11157534 | 11157575 | 11157534 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11157436 | 11157444 | 11157436 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11155285 | 11155360 | 11155285 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11154964 | 11155062 | 11154964 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11154811 | 11154890 | 11154811 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11154312 | 11154374 | 11154312 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | CDS | 11154137 | 11154212 | 11154137 | ID=Msa0007800-mRNA-1:cds;Parent=Msa0007800-mRNA-1 |
| chr1_1 | three_prime_UTR | 11153883 | 11154136 | 11153883 | ID=Msa0007800-mRNA-1:three_prime_utr;Parent=Msa0007800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
