AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0098410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098410 MtrunA17_Chr1g0151731 89.107 560 26 3 1 559 1 526 0.0 1013
Msa0098410 MtrunA17_Chr6g0488071 29.372 446 256 10 1 438 1 395 5.47e-43 160
Msa0098410 MtrunA17_Chr6g0488141 28.634 454 249 12 1 447 1 386 2.00e-40 152
Msa0098410 MtrunA17_Chr6g0488291 31.835 267 162 7 1 257 1 257 3.40e-21 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0098410 AT5G11780.1 32.353 544 281 19 13 548 16 480 2.73e-68 229

Find 152 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTTCCTGACTGCTTTAT+TGG 0.164340 1_3:+4345864 Msa0098410:CDS
TGTGACGGTGGTGGTGAATC+TGG 0.185538 1_3:+4344640 Msa0098410:CDS
TCCATGTATAGAACTTAAAA+AGG 0.209498 1_3:-4347719 None:intergenic
TCCATGTATAGAAGTTAAAA+AGG 0.215610 1_3:-4347785 None:intergenic
GAACACGGATTGGCAATATT+TGG 0.248245 1_3:+4347616 Msa0098410:CDS
AACTTCACTGGTTGCGGTTA+AGG 0.257652 1_3:+4344351 Msa0098410:CDS
TTTCTCAGTTCCAAACAAAA+TGG 0.266281 1_3:+4344105 Msa0098410:exon
CTCAAGTAACCTCTCTATAA+AGG 0.292180 1_3:-4346147 None:intergenic
TTCCCATTCAATTGATCAAC+TGG 0.297157 1_3:+4347227 Msa0098410:CDS
GGGTTGTGAGGTTGGTTATT+TGG 0.299959 1_3:+4344732 Msa0098410:CDS
AATTGATAGCGAAATCTTTC+AGG 0.305089 1_3:-4347013 None:intergenic
TGATGCTAGAGTTGGGGTTT+TGG 0.312253 1_3:+4344576 Msa0098410:CDS
TGAGGTGAAATCGGTGAAAT+TGG 0.317673 1_3:-4344224 None:intergenic
GGTAGCACCGTTGCGGTATT+CGG 0.322536 1_3:-4344203 None:intergenic
TGTGAGGTTGGTTATTTGGC+TGG 0.324431 1_3:+4344736 Msa0098410:CDS
TTCAGGTTATGACGGGGTTT+CGG 0.342353 1_3:+4344857 Msa0098410:CDS
GTTGCATGCTGCAGCAGTTC+AGG 0.345498 1_3:+4344840 Msa0098410:CDS
AAGAGTGAAGTTGAGGTTAA+TGG 0.346324 1_3:+4344550 Msa0098410:CDS
GTTTGAGATTTATCGTTTGA+TGG 0.347535 1_3:+4344450 Msa0098410:CDS
GCAATATTTGGTTGTGGAAC+TGG 0.348987 1_3:+4347628 Msa0098410:CDS
ACTTCACTGGTTGCGGTTAA+GGG 0.353217 1_3:+4344352 Msa0098410:CDS
GTGAGGTTGGTTATTTGGCT+GGG 0.359801 1_3:+4344737 Msa0098410:CDS
CCCTTGAATTTCATACTAAT+AGG 0.362321 1_3:+4344311 Msa0098410:CDS
GGTTCGGAAGGGGATTGAAA+TGG 0.367232 1_3:+4344711 Msa0098410:CDS
TTTGCCAGTGATCTCCTTGC+TGG 0.370811 1_3:+4345928 Msa0098410:CDS
TCAAGTAACCTCTCTATAAA+GGG 0.371840 1_3:-4346146 None:intergenic
GTTCGGAAGGGGATTGAAAT+GGG 0.378899 1_3:+4344712 Msa0098410:CDS
TGAAAGATTTCGCTATCAAT+TGG 0.402702 1_3:+4347015 Msa0098410:CDS
ATTGAAATGGGTTGTGAGGT+TGG 0.406186 1_3:+4344724 Msa0098410:CDS
ACCTATTAGTATGAAATTCA+AGG 0.406338 1_3:-4344312 None:intergenic
TGAGTGATGGGGTTCGGAAG+GGG 0.411569 1_3:+4344701 Msa0098410:CDS
GTGACGGTGGTGGTGAATCT+GGG 0.413825 1_3:+4344641 Msa0098410:CDS
AAGGAGATCACTGGCAAAGC+TGG 0.420916 1_3:-4345923 None:intergenic
TTCTAGAACTTCACTGGTTG+CGG 0.421114 1_3:+4344345 Msa0098410:CDS
TACAGGGAAAAGGGTGATCA+TGG 0.421383 1_3:+4347163 Msa0098410:intron
AATGGTGGTGATGCTAGAGT+TGG 0.423330 1_3:+4344568 Msa0098410:CDS
TAGAACCACAGAAGTGGAAT+TGG 0.423743 1_3:-4344283 None:intergenic
ATGGTGGTGATGCTAGAGTT+GGG 0.425809 1_3:+4344569 Msa0098410:CDS
ATTTATCGTTTGATGGGTTG+TGG 0.428044 1_3:+4344457 Msa0098410:CDS
GGGGATCGCGAGAGGGGAGA+AGG 0.432937 1_3:+4344810 Msa0098410:CDS
AGGAACTGTGCCTATGCTTC+CGG 0.434210 1_3:+4347750 Msa0098410:CDS
AAATTGAGGGTTTGGTGGAA+GGG 0.439420 1_3:+4344497 Msa0098410:CDS
GAGAAATTGTTGAAGGAAGT+TGG 0.441841 1_3:-4344088 None:intergenic
GTTGGTGGTGATTGTTTGAA+AGG 0.443415 1_3:+4344664 Msa0098410:CDS
CGAACCCCATCACTCACAAA+AGG 0.448596 1_3:-4344694 None:intergenic
TCTGCTTGGTTACAGGGAAA+AGG 0.448658 1_3:+4347153 Msa0098410:intron
AATTGAGGGTTTGGTGGAAG+GGG 0.450119 1_3:+4344498 Msa0098410:CDS
GTGAGTGATGGGGTTCGGAA+GGG 0.455588 1_3:+4344700 Msa0098410:CDS
CTGCTTGGTTACAGGGAAAA+GGG 0.455759 1_3:+4347154 Msa0098410:intron
AACCCAGTTGATCAATTGAA+TGG 0.459406 1_3:-4347230 None:intergenic
TTGGTGGTGATTGTTTGAAA+GGG 0.460482 1_3:+4344665 Msa0098410:CDS
GAAGAGTGAAATTGAGGGTT+TGG 0.461305 1_3:+4344489 Msa0098410:CDS
TCATTCATTAATTGTCAAGC+TGG 0.461966 1_3:+4346969 Msa0098410:CDS
GAAATTGAGGGTTTGGTGGA+AGG 0.462960 1_3:+4344496 Msa0098410:CDS
AAGAACTGTGCCTATGCTTC+CGG 0.464773 1_3:+4347684 Msa0098410:CDS
TGTGAGTGATGGGGTTCGGA+AGG 0.467210 1_3:+4344699 Msa0098410:CDS
GCAGCAGTTCAGGTTATGAC+GGG 0.467718 1_3:+4344850 Msa0098410:CDS
TGAGGTTGGTTATTTGGCTG+GGG 0.467778 1_3:+4344738 Msa0098410:CDS
AACTCACTTATAAGATCAAT+AGG 0.470267 1_3:-4347304 None:intergenic
AGAAGTGAAGAGTGAAATTG+AGG 0.470560 1_3:+4344483 Msa0098410:CDS
CTGCTTGTTTCGTGTTGCGA+TGG 0.470961 1_3:+4344385 Msa0098410:CDS
GGAGAAGATTGAGGTGAAAT+CGG 0.471563 1_3:-4344233 None:intergenic
TGCGGTATTCGGTTAGGAAA+CGG 0.474041 1_3:-4344192 None:intergenic
AGCATTGGTTGGTAGTAAAG+TGG 0.474818 1_3:-4344154 None:intergenic
TTTATCGTTTGATGGGTTGT+GGG 0.480718 1_3:+4344458 Msa0098410:CDS
ACAACCACTCCCTAAAACCT+AGG 0.490065 1_3:+4344051 Msa0098410:five_prime_UTR
AGCTGCTGAGGAACACGGAT+TGG 0.491886 1_3:+4347606 Msa0098410:CDS
TTTGAGATTTATCGTTTGAT+GGG 0.493525 1_3:+4344451 Msa0098410:CDS
CACCGTTGCGGTATTCGGTT+AGG 0.495050 1_3:-4344198 None:intergenic
GTACTATTCTGTGATGATGA+TGG 0.496979 1_3:+4346941 Msa0098410:CDS
TCATCATCACAGAATAGTAC+AGG 0.498391 1_3:-4346938 None:intergenic
CAGTGGCATCATAATATGAT+TGG 0.500929 1_3:-4346122 None:intergenic
ACCCAGTTGATCAATTGAAT+GGG 0.505767 1_3:-4347229 None:intergenic
TTGATTGATTCTTTGAGCAT+TGG 0.507350 1_3:-4344169 None:intergenic
GTGGACGCCGTAAGTTTGTC+TGG 0.507922 1_3:+4347859 Msa0098410:CDS
AGAAGCTTCTAGAACTTCAC+TGG 0.511669 1_3:+4344339 Msa0098410:CDS
CTTATGTAAATTCCTTCTGT+AGG 0.514311 1_3:+4347197 Msa0098410:CDS
TGGATGGTTGATTGTGACGG+TGG 0.519274 1_3:+4344628 Msa0098410:CDS
GCATTGGTTGGTAGTAAAGT+GGG 0.519982 1_3:-4344153 None:intergenic
GCAACTAGAAAACGCAAAGA+AGG 0.525322 1_3:+4347913 Msa0098410:CDS
GAAGTGAAGAGTGAAATTGA+GGG 0.532302 1_3:+4344484 Msa0098410:CDS
GAGTGAAATTGAGGGTTTGG+TGG 0.538067 1_3:+4344492 Msa0098410:CDS
TGGTGGTGATGCTAGAGTTG+GGG 0.538164 1_3:+4344570 Msa0098410:CDS
GGATTGGCAATATTTGGTTG+TGG 0.538609 1_3:+4347622 Msa0098410:CDS
TCACAATCAACCATCCAAAC+CGG 0.540267 1_3:-4344622 None:intergenic
ATGGTTGATTGTGACGGTGG+TGG 0.541207 1_3:+4344631 Msa0098410:CDS
TAAGCACCAATAAAGCAGTC+AGG 0.543520 1_3:-4345870 None:intergenic
AGCGAAATCTTTCAGGCTGT+CGG 0.543878 1_3:-4347006 None:intergenic
TGAGGCGGGGATCGCGAGAG+GGG 0.544183 1_3:+4344804 Msa0098410:CDS
TTGTATGAAGAGTGAAGTTG+AGG 0.545439 1_3:+4344543 Msa0098410:CDS
GATCAATTGAATGGGAATGC+AGG 0.547063 1_3:-4347221 None:intergenic
TTGTTGATTTGATACCGGTT+TGG 0.550293 1_3:+4344608 Msa0098410:CDS
GAACCCCATCACTCACAAAA+GGG 0.551030 1_3:-4344693 None:intergenic
CCTATTAGTATGAAATTCAA+GGG 0.552310 1_3:-4344311 None:intergenic
ACCTCTCTATAAAGGGGCAG+TGG 0.553165 1_3:-4346139 None:intergenic
GGTGGTGGTGAATCTGGGGT+TGG 0.555180 1_3:+4344646 Msa0098410:CDS
TTTGAGGCGGGGATCGCGAG+AGG 0.561298 1_3:+4344802 Msa0098410:CDS
AACCACAGAAGTGGAATTGG+TGG 0.561727 1_3:-4344280 None:intergenic
GGTGGTGAATCTGGGGTTGG+TGG 0.563041 1_3:+4344649 Msa0098410:CDS
ATCATCACCAGACAAACTTA+CGG 0.564664 1_3:-4347866 None:intergenic
TGCAGCAGTTCAGGTTATGA+CGG 0.565355 1_3:+4344849 Msa0098410:CDS
TGGAACTGAGAAATTGTTGA+AGG 0.565877 1_3:-4344095 None:intergenic
TGATTTGATACCGGTTTGGA+TGG 0.570864 1_3:+4344612 Msa0098410:CDS
CAACCACTCCCTAAAACCTA+GGG 0.570898 1_3:+4344052 Msa0098410:five_prime_UTR
AGAGATGATGAGTAAGTACA+TGG 0.571721 1_3:-4344022 None:intergenic
TGTTCAACCACCGGAAGCAT+AGG 0.572107 1_3:-4347760 None:intergenic
ACCCACCAATTCCACTTCTG+TGG 0.572448 1_3:+4344278 Msa0098410:CDS
TTGATTCTTTGAGCATTGGT+TGG 0.573059 1_3:-4344165 None:intergenic
CTTCTAGCTGCTGAGGAACA+CGG 0.574329 1_3:+4347601 Msa0098410:CDS
AAAACGCAAAGAAGGAATTG+AGG 0.576892 1_3:+4347921 Msa0098410:CDS
ATGGATGTGTCGCGATGAAG+AGG 0.578592 1_3:+4344404 Msa0098410:CDS
AGCGGCATAGACAGAAAGAT+CGG 0.579831 1_3:+4347262 Msa0098410:CDS
GCCACTGCCCCTTTATAGAG+AGG 0.580203 1_3:+4346138 Msa0098410:CDS
TGTTTGACCACCGGAAGCAT+AGG 0.585831 1_3:-4347694 None:intergenic
TGAAGTGGTGTGAATTGCGC+GGG 0.586090 1_3:-4344254 None:intergenic
TCCCATTCAATTGATCAACT+GGG 0.586710 1_3:+4347228 Msa0098410:CDS
GGGGATTGAAATGGGTTGTG+AGG 0.589661 1_3:+4344720 Msa0098410:CDS
ACAGGGAAAAGGGTGATCAT+GGG 0.591860 1_3:+4347164 Msa0098410:intron
GTTTGGATGGTTGATTGTGA+CGG 0.592189 1_3:+4344625 Msa0098410:CDS
TCACTGTTGCTTGAATGTAC+AGG 0.592735 1_3:-4348010 None:intergenic
CATTGGTTGGTAGTAAAGTG+GGG 0.592808 1_3:-4344152 None:intergenic
GCTGAATAGAACCACAGAAG+TGG 0.594045 1_3:-4344289 None:intergenic
TTGAGGCGGGGATCGCGAGA+GGG 0.594625 1_3:+4344803 Msa0098410:CDS
AGTCAGCTATACAGTCTGCT+AGG 0.596408 1_3:+4347051 Msa0098410:CDS
TGGAATTGGTGGGTCTGAAG+TGG 0.597501 1_3:-4344269 None:intergenic
TTATCGTTTGATGGGTTGTG+GGG 0.599982 1_3:+4344459 Msa0098410:CDS
TGAAATTGGTAGCACCGTTG+CGG 0.601583 1_3:-4344210 None:intergenic
AACTGGCAAGCATCGTGCAA+AGG 0.604651 1_3:+4347645 Msa0098410:CDS
ATTGGTTGGTAGTAAAGTGG+GGG 0.609441 1_3:-4344151 None:intergenic
AGAATGGCTTCTAGCTGCTG+AGG 0.613476 1_3:+4347594 Msa0098410:intron
CTGAAGTGGTGTGAATTGCG+CGG 0.614652 1_3:-4344255 None:intergenic
TCAATAGGAGTGGAAACACT+TGG 0.615988 1_3:-4347289 None:intergenic
CTTACCAGCAAGGAGATCAC+TGG 0.624906 1_3:-4345932 None:intergenic
AACTGTGCCTATGCTTCCGG+TGG 0.625094 1_3:+4347687 Msa0098410:CDS
TGACGGTGGTGGTGAATCTG+GGG 0.625322 1_3:+4344642 Msa0098410:CDS
GTACATTCAAGCAACAGTGA+TGG 0.626221 1_3:+4348013 Msa0098410:CDS
AACTGTGCCTATGCTTCCGG+TGG 0.628824 1_3:+4347753 Msa0098410:CDS
CATCATCACAGAATAGTACA+GGG 0.630428 1_3:-4346937 None:intergenic
CAAGTAACCTCTCTATAAAG+GGG 0.638397 1_3:-4346145 None:intergenic
ACTTATAAGATCAATAGGAG+TGG 0.641994 1_3:-4347299 None:intergenic
GGGAATGCAGGACCTACAGA+AGG 0.642543 1_3:-4347209 None:intergenic
CAGCAGTTCAGGTTATGACG+GGG 0.647188 1_3:+4344851 Msa0098410:CDS
AATTGCGCGGGAGAAGATTG+AGG 0.647307 1_3:-4344242 None:intergenic
ACCACAGAAGTGGAATTGGT+GGG 0.661008 1_3:-4344279 None:intergenic
TATGATGGTACTTACCAGCA+AGG 0.661766 1_3:-4345942 None:intergenic
TTCCTAACCGAATACCGCAA+CGG 0.665195 1_3:+4344196 Msa0098410:CDS
AACTGGGTTACTCGTCAAAG+CGG 0.670412 1_3:+4347244 Msa0098410:CDS
CGATAAATCTCAAACACCAA+CGG 0.671461 1_3:-4344442 None:intergenic
TTGGTTGGTAGTAAAGTGGG+GGG 0.687195 1_3:-4344150 None:intergenic
AGTGAAGTTGAGGTTAATGG+TGG 0.690712 1_3:+4344553 Msa0098410:CDS
TGTGTCGCGATGAAGAGGAT+CGG 0.711856 1_3:+4344409 Msa0098410:CDS
TGTAGAGATGCATGATACTG+TGG 0.718185 1_3:+4347840 Msa0098410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACAAGTTATACAAATAA+AGG - chr1_3:4345778-4345797 None:intergenic 15.0%
!!! TATAATCTTTTCTGTAAAAT+AGG - chr1_3:4346417-4346436 None:intergenic 15.0%
!!! TATTTTACAGAAAAGATTAT+AGG + chr1_3:4346416-4346435 Msa0098410:intron 15.0%
!! AAAATAAACTTATATGAGTA+GGG - chr1_3:4346462-4346481 None:intergenic 15.0%
!! AAAAATAAACTTATATGAGT+AGG - chr1_3:4346463-4346482 None:intergenic 15.0%
!! GAAAGAATAATAAAAGAAAA+TGG - chr1_3:4347345-4347364 None:intergenic 15.0%
!!! TTTCGGAATTTTTACTTTTT+GGG + chr1_3:4344874-4344893 Msa0098410:CDS 20.0%
!! TAGTTTATATGTAAGTTGTT+TGG - chr1_3:4345429-4345448 None:intergenic 20.0%
!! TATAAAAAACAGAACAAAAC+AGG - chr1_3:4346284-4346303 None:intergenic 20.0%
!! ATAATGTTTGATAAATGAAC+TGG - chr1_3:4346341-4346360 None:intergenic 20.0%
!!! TATTTTTCATGCGATAATTT+AGG + chr1_3:4346476-4346495 Msa0098410:intron 20.0%
!!! AATTGAAATTTTTGTGATGT+TGG + chr1_3:4346558-4346577 Msa0098410:intron 20.0%
!!! GAAAACTATGATTTAGATTT+TGG + chr1_3:4346580-4346599 Msa0098410:intron 20.0%
!! AATAATAAAAGAAAATGGAG+GGG - chr1_3:4347340-4347359 None:intergenic 20.0%
!! GAATAATAAAAGAAAATGGA+GGG - chr1_3:4347341-4347360 None:intergenic 20.0%
!! AGAATAATAAAAGAAAATGG+AGG - chr1_3:4347342-4347361 None:intergenic 20.0%
!!! TTTTTAAAAAAAGTTCAGCA+AGG + chr1_3:4347397-4347416 Msa0098410:intron 20.0%
! CCTATTAGTATGAAATTCAA+GGG - chr1_3:4344314-4344333 None:intergenic 25.0%
! ACCTATTAGTATGAAATTCA+AGG - chr1_3:4344315-4344334 None:intergenic 25.0%
!! TTTGAGATTTATCGTTTGAT+GGG + chr1_3:4344451-4344470 Msa0098410:CDS 25.0%
!!! GAAAATGTGTTTGATTTTTG+AGG + chr1_3:4344786-4344805 Msa0098410:CDS 25.0%
!!! GTTTCGGAATTTTTACTTTT+TGG + chr1_3:4344873-4344892 Msa0098410:CDS 25.0%
!! ACTACAATTTAAAATCATGC+TGG - chr1_3:4344928-4344947 None:intergenic 25.0%
!!! AGGTTTTATAAAATGGATTG+CGG - chr1_3:4345073-4345092 None:intergenic 25.0%
!!! GTCATCAAGGTTTTATAAAA+TGG - chr1_3:4345080-4345099 None:intergenic 25.0%
! GATAATAAGCACTTATGTAT+AGG - chr1_3:4345353-4345372 None:intergenic 25.0%
! TCATTGCAACAAAATTGTTA+AGG - chr1_3:4345492-4345511 None:intergenic 25.0%
!! CATAATTATATTGAGGCATT+TGG - chr1_3:4345534-4345553 None:intergenic 25.0%
! TGCCTCAATATAATTATGTT+CGG + chr1_3:4345536-4345555 Msa0098410:intron 25.0%
! AATTAAATTTCACCAAGATC+TGG - chr1_3:4345612-4345631 None:intergenic 25.0%
!!! TTGTGTTTTAATACTCAAGT+TGG + chr1_3:4345650-4345669 Msa0098410:intron 25.0%
! AGCATTACTTAGTTGTAATT+CGG + chr1_3:4345971-4345990 Msa0098410:intron 25.0%
! TTAGTTGTAATTCGGAATTA+AGG + chr1_3:4345979-4345998 Msa0098410:intron 25.0%
! TAGTTGTAATTCGGAATTAA+GGG + chr1_3:4345980-4345999 Msa0098410:intron 25.0%
! TAATCTTACACATAGTTTCA+TGG - chr1_3:4346040-4346059 None:intergenic 25.0%
! AAACATTATCTTAGATTAGC+TGG + chr1_3:4346352-4346371 Msa0098410:intron 25.0%
!! TCTTTTCTGTAAAATAGGTT+TGG - chr1_3:4346412-4346431 None:intergenic 25.0%
! TTGATTCTGTTTATTGATGT+TGG + chr1_3:4346519-4346538 Msa0098410:intron 25.0%
!! CTTTTCAAAGACAATATACT+GGG - chr1_3:4346672-4346691 None:intergenic 25.0%
!! CAGTATATTGTCTTTGAAAA+GGG + chr1_3:4346671-4346690 Msa0098410:intron 25.0%
! TGTCATATTCAACAATTTAC+TGG + chr1_3:4346869-4346888 Msa0098410:intron 25.0%
! AACTCACTTATAAGATCAAT+AGG - chr1_3:4347307-4347326 None:intergenic 25.0%
! CACTGATATAACTTGAAATT+GGG - chr1_3:4347445-4347464 None:intergenic 25.0%
! ACACTGATATAACTTGAAAT+TGG - chr1_3:4347446-4347465 None:intergenic 25.0%
! TAGTGATTTCTTATTCAGAA+TGG + chr1_3:4347578-4347597 Msa0098410:intron 25.0%
! CCATGTATAGAACTTAAAAA+GGG - chr1_3:4347721-4347740 None:intergenic 25.0%
! TCCATGTATAGAACTTAAAA+AGG - chr1_3:4347722-4347741 None:intergenic 25.0%
!!! TTTTTAAGTTCTATACATGG+AGG + chr1_3:4347721-4347740 Msa0098410:CDS 25.0%
!!! TTTTAAGTTCTATACATGGA+GGG + chr1_3:4347722-4347741 Msa0098410:CDS 25.0%
! CCATGTATAGAAGTTAAAAA+GGG - chr1_3:4347787-4347806 None:intergenic 25.0%
! TCCATGTATAGAAGTTAAAA+AGG - chr1_3:4347788-4347807 None:intergenic 25.0%
!!! TTTTTAACTTCTATACATGG+AGG + chr1_3:4347787-4347806 Msa0098410:CDS 25.0%
!!! TTTTAACTTCTATACATGGA+GGG + chr1_3:4347788-4347807 Msa0098410:CDS 25.0%
TTTCTCAGTTCCAAACAAAA+TGG + chr1_3:4344105-4344124 Msa0098410:exon 30.0%
! TTTTGTGTGTCCATTTTGTT+TGG - chr1_3:4344118-4344137 None:intergenic 30.0%
! TTGATTGATTCTTTGAGCAT+TGG - chr1_3:4344172-4344191 None:intergenic 30.0%
CCCTTGAATTTCATACTAAT+AGG + chr1_3:4344311-4344330 Msa0098410:CDS 30.0%
! GTTTGAGATTTATCGTTTGA+TGG + chr1_3:4344450-4344469 Msa0098410:CDS 30.0%
!! AATGTGTTTGATTTTTGAGG+CGG + chr1_3:4344789-4344808 Msa0098410:CDS 30.0%
AGTCTAAATAGTTGTCATCA+AGG - chr1_3:4345093-4345112 None:intergenic 30.0%
GAAAATTAAGCTGTTAACGT+AGG + chr1_3:4345398-4345417 Msa0098410:intron 30.0%
AAAGAATGCATGACAACAAA+TGG - chr1_3:4345453-4345472 None:intergenic 30.0%
GACCGAACATAATTATATTG+AGG - chr1_3:4345541-4345560 None:intergenic 30.0%
ATTATGTTCGGTCATTATGT+TGG + chr1_3:4345548-4345567 Msa0098410:intron 30.0%
! TGTAGATTCTACAGCATTTT+AGG + chr1_3:4345583-4345602 Msa0098410:intron 30.0%
TATATTACTCAGTTTGACGT+AGG + chr1_3:4345794-4345813 Msa0098410:intron 30.0%
AGTAATGCTAAAGCATATGA+TGG - chr1_3:4345960-4345979 None:intergenic 30.0%
TCAAGTAACCTCTCTATAAA+GGG - chr1_3:4346149-4346168 None:intergenic 30.0%
GAACAAAACAGGACTAAATA+AGG - chr1_3:4346273-4346292 None:intergenic 30.0%
! ATAAGATCCGACAGTATTTT+TGG + chr1_3:4346377-4346396 Msa0098410:intron 30.0%
TTCATGCGATAATTTAGGTA+AGG + chr1_3:4346481-4346500 Msa0098410:intron 30.0%
CAGAATCAATATTTCAACTC+TGG - chr1_3:4346508-4346527 None:intergenic 30.0%
! CCTTTTCAAAGACAATATAC+TGG - chr1_3:4346673-4346692 None:intergenic 30.0%
! CCAGTATATTGTCTTTGAAA+AGG + chr1_3:4346670-4346689 Msa0098410:intron 30.0%
TGACATAATCTTCTCAACAT+TGG + chr1_3:4346726-4346745 Msa0098410:intron 30.0%
! AATTCGAGTTCTTTGGTTTA+TGG + chr1_3:4346780-4346799 Msa0098410:intron 30.0%
! TGCATCATACTTTTCTTGAA+GGG - chr1_3:4346823-4346842 None:intergenic 30.0%
! ATGCATCATACTTTTCTTGA+AGG - chr1_3:4346824-4346843 None:intergenic 30.0%
TCATTCATTAATTGTCAAGC+TGG + chr1_3:4346969-4346988 Msa0098410:CDS 30.0%
!! AATTGATAGCGAAATCTTTC+AGG - chr1_3:4347016-4347035 None:intergenic 30.0%
TGAAAGATTTCGCTATCAAT+TGG + chr1_3:4347015-4347034 Msa0098410:CDS 30.0%
TCATATTTCACAGCTACAAT+AGG - chr1_3:4347088-4347107 None:intergenic 30.0%
GTAGCTGTGAAATATGAATT+AGG + chr1_3:4347091-4347110 Msa0098410:intron 30.0%
GTGAAATATGAATTAGGAAG+TGG + chr1_3:4347097-4347116 Msa0098410:intron 30.0%
AATAAGTCTGATAATCTGCT+TGG + chr1_3:4347139-4347158 Msa0098410:intron 30.0%
CTTATGTAAATTCCTTCTGT+AGG + chr1_3:4347197-4347216 Msa0098410:CDS 30.0%
ACTTATAAGATCAATAGGAG+TGG - chr1_3:4347302-4347321 None:intergenic 30.0%
!!! CCCTTTTTAAGTTCTATACA+TGG + chr1_3:4347718-4347737 Msa0098410:CDS 30.0%
!!! CCCTTTTTAACTTCTATACA+TGG + chr1_3:4347784-4347803 Msa0098410:CDS 30.0%
AGAGATGATGAGTAAGTACA+TGG - chr1_3:4344025-4344044 None:intergenic 35.0%
! GAGAAAAACCCTAGGTTTTA+GGG - chr1_3:4344063-4344082 None:intergenic 35.0%
! AGAGAAAAACCCTAGGTTTT+AGG - chr1_3:4344064-4344083 None:intergenic 35.0%
GAGAAATTGTTGAAGGAAGT+TGG - chr1_3:4344091-4344110 None:intergenic 35.0%
TGGAACTGAGAAATTGTTGA+AGG - chr1_3:4344098-4344117 None:intergenic 35.0%
!! TTGATTCTTTGAGCATTGGT+TGG - chr1_3:4344168-4344187 None:intergenic 35.0%
CGATAAATCTCAAACACCAA+CGG - chr1_3:4344445-4344464 None:intergenic 35.0%
!! ATTTATCGTTTGATGGGTTG+TGG + chr1_3:4344457-4344476 Msa0098410:CDS 35.0%
!! TTTATCGTTTGATGGGTTGT+GGG + chr1_3:4344458-4344477 Msa0098410:CDS 35.0%
AGAAGTGAAGAGTGAAATTG+AGG + chr1_3:4344483-4344502 Msa0098410:CDS 35.0%
GAAGTGAAGAGTGAAATTGA+GGG + chr1_3:4344484-4344503 Msa0098410:CDS 35.0%
TTGTATGAAGAGTGAAGTTG+AGG + chr1_3:4344543-4344562 Msa0098410:CDS 35.0%
AAGAGTGAAGTTGAGGTTAA+TGG + chr1_3:4344550-4344569 Msa0098410:CDS 35.0%
!!! GGGTTTTGTTGATTTGATAC+CGG + chr1_3:4344603-4344622 Msa0098410:CDS 35.0%
!! TTGTTGATTTGATACCGGTT+TGG + chr1_3:4344608-4344627 Msa0098410:CDS 35.0%
!! TTGGTGGTGATTGTTTGAAA+GGG + chr1_3:4344665-4344684 Msa0098410:CDS 35.0%
! TTTTTCCCTTTTGTGAGTGA+TGG + chr1_3:4344688-4344707 Msa0098410:CDS 35.0%
! TTTTCCCTTTTGTGAGTGAT+GGG + chr1_3:4344689-4344708 Msa0098410:CDS 35.0%
!!! ATGTGTTTGATTTTTGAGGC+GGG + chr1_3:4344790-4344809 Msa0098410:CDS 35.0%
AGCTAATGTAATCTCAACTG+CGG + chr1_3:4344986-4345005 Msa0098410:intron 35.0%
TTAAGCACTTGTCAACTGTT+TGG + chr1_3:4345184-4345203 Msa0098410:intron 35.0%
TAAGCACTTGTCAACTGTTT+GGG + chr1_3:4345185-4345204 Msa0098410:intron 35.0%
CAGCTTATGAAAATAGACTG+TGG + chr1_3:4345278-4345297 Msa0098410:intron 35.0%
! GCTTATCAGATATGCTTTTG+AGG + chr1_3:4345888-4345907 Msa0098410:CDS 35.0%
!! TATGCTTTTGAGGATGATGT+TGG + chr1_3:4345898-4345917 Msa0098410:CDS 35.0%
CACATAGTTTCATGGAGAAA+AGG - chr1_3:4346032-4346051 None:intergenic 35.0%
CAGTGGCATCATAATATGAT+TGG - chr1_3:4346125-4346144 None:intergenic 35.0%
CAAGTAACCTCTCTATAAAG+GGG - chr1_3:4346148-4346167 None:intergenic 35.0%
CTCAAGTAACCTCTCTATAA+AGG - chr1_3:4346150-4346169 None:intergenic 35.0%
TAAGGAAAAGTGGTAAGTGT+GGG - chr1_3:4346255-4346274 None:intergenic 35.0%
ATAAGGAAAAGTGGTAAGTG+TGG - chr1_3:4346256-4346275 None:intergenic 35.0%
CAGGACTAAATAAGGAAAAG+TGG - chr1_3:4346265-4346284 None:intergenic 35.0%
!!! ATCCGACAGTATTTTTGGTT+CGG + chr1_3:4346382-4346401 Msa0098410:intron 35.0%
GAAAAGATTATAGGTCACTC+AGG + chr1_3:4346425-4346444 Msa0098410:intron 35.0%
GGTGAACTAAACAATTTCTC+TGG - chr1_3:4346631-4346650 None:intergenic 35.0%
GGGAACTATACTTGAAGAAT+CGG - chr1_3:4346652-4346671 None:intergenic 35.0%
CAAAGAACTCGAATTACCAA+CGG - chr1_3:4346775-4346794 None:intergenic 35.0%
!! TTTACTGGTCGTTTTGCTAT+AGG + chr1_3:4346884-4346903 Msa0098410:intron 35.0%
!! TTACTGGTCGTTTTGCTATA+GGG + chr1_3:4346885-4346904 Msa0098410:intron 35.0%
CATCATCACAGAATAGTACA+GGG - chr1_3:4346940-4346959 None:intergenic 35.0%
TCATCATCACAGAATAGTAC+AGG - chr1_3:4346941-4346960 None:intergenic 35.0%
! GTACTATTCTGTGATGATGA+TGG + chr1_3:4346941-4346960 Msa0098410:CDS 35.0%
ATGAATTAGGAAGTGGTTTC+TGG + chr1_3:4347104-4347123 Msa0098410:intron 35.0%
TGATAATCTGCTTGGTTACA+GGG + chr1_3:4347147-4347166 Msa0098410:intron 35.0%
TTCCCATTCAATTGATCAAC+TGG + chr1_3:4347227-4347246 Msa0098410:CDS 35.0%
TCCCATTCAATTGATCAACT+GGG + chr1_3:4347228-4347247 Msa0098410:CDS 35.0%
ACCCAGTTGATCAATTGAAT+GGG - chr1_3:4347232-4347251 None:intergenic 35.0%
AACCCAGTTGATCAATTGAA+TGG - chr1_3:4347233-4347252 None:intergenic 35.0%
AAAGAAAATGGAGGGGTAAT+TGG - chr1_3:4347333-4347352 None:intergenic 35.0%
ACTTCTCTTTGACTGTTAAG+AGG + chr1_3:4347366-4347385 Msa0098410:intron 35.0%
GCAAGGTGTATAATTGAATG+TGG + chr1_3:4347414-4347433 Msa0098410:intron 35.0%
TCAAGTTATATCAGTGTCGT+TGG + chr1_3:4347449-4347468 Msa0098410:intron 35.0%
ATCATCACCAGACAAACTTA+CGG - chr1_3:4347869-4347888 None:intergenic 35.0%
AAAACGCAAAGAAGGAATTG+AGG + chr1_3:4347921-4347940 Msa0098410:CDS 35.0%
!! TTTTAGGGAGTGGTTGTAAG+TGG - chr1_3:4344048-4344067 None:intergenic 40.0%
!! ATTGGTTGGTAGTAAAGTGG+GGG - chr1_3:4344154-4344173 None:intergenic 40.0%
!! CATTGGTTGGTAGTAAAGTG+GGG - chr1_3:4344155-4344174 None:intergenic 40.0%
!! GCATTGGTTGGTAGTAAAGT+GGG - chr1_3:4344156-4344175 None:intergenic 40.0%
!! AGCATTGGTTGGTAGTAAAG+TGG - chr1_3:4344157-4344176 None:intergenic 40.0%
TGAGGTGAAATCGGTGAAAT+TGG - chr1_3:4344227-4344246 None:intergenic 40.0%
GGAGAAGATTGAGGTGAAAT+CGG - chr1_3:4344236-4344255 None:intergenic 40.0%
TAGAACCACAGAAGTGGAAT+TGG - chr1_3:4344286-4344305 None:intergenic 40.0%
!! AGAAGCTTCTAGAACTTCAC+TGG + chr1_3:4344339-4344358 Msa0098410:CDS 40.0%
!! TTCTAGAACTTCACTGGTTG+CGG + chr1_3:4344345-4344364 Msa0098410:CDS 40.0%
!! TTATCGTTTGATGGGTTGTG+GGG + chr1_3:4344459-4344478 Msa0098410:CDS 40.0%
GAAGAGTGAAATTGAGGGTT+TGG + chr1_3:4344489-4344508 Msa0098410:CDS 40.0%
!! AAATTGAGGGTTTGGTGGAA+GGG + chr1_3:4344497-4344516 Msa0098410:CDS 40.0%
AGTGAAGTTGAGGTTAATGG+TGG + chr1_3:4344553-4344572 Msa0098410:CDS 40.0%
!! TGATTTGATACCGGTTTGGA+TGG + chr1_3:4344612-4344631 Msa0098410:CDS 40.0%
TCACAATCAACCATCCAAAC+CGG - chr1_3:4344625-4344644 None:intergenic 40.0%
GTTTGGATGGTTGATTGTGA+CGG + chr1_3:4344625-4344644 Msa0098410:CDS 40.0%
!! GTTGGTGGTGATTGTTTGAA+AGG + chr1_3:4344664-4344683 Msa0098410:CDS 40.0%
! TTTCCCTTTTGTGAGTGATG+GGG + chr1_3:4344690-4344709 Msa0098410:CDS 40.0%
!! ATTGAAATGGGTTGTGAGGT+TGG + chr1_3:4344724-4344743 Msa0098410:CDS 40.0%
!!! TGTGTTTGATTTTTGAGGCG+GGG + chr1_3:4344791-4344810 Msa0098410:CDS 40.0%
! CTTGTACACTTGGTAATTGC+TGG - chr1_3:4345121-4345140 None:intergenic 40.0%
GCAATTACCAAGTGTACAAG+CGG + chr1_3:4345121-4345140 Msa0098410:intron 40.0%
CAATTACCAAGTGTACAAGC+GGG + chr1_3:4345122-4345141 Msa0098410:intron 40.0%
! TGGGGTATTTAGGATCTGTT+TGG + chr1_3:4345145-4345164 Msa0098410:intron 40.0%
TCGGTCATTATGTTGGAGTT+TGG + chr1_3:4345555-4345574 Msa0098410:intron 40.0%
!! CATTTTAGGAAGCCAGATCT+TGG + chr1_3:4345597-4345616 Msa0098410:intron 40.0%
AGTTGTCTCCTGTCTTTGTA+TGG + chr1_3:4345705-4345724 Msa0098410:intron 40.0%
GTTGTCTCCTGTCTTTGTAT+GGG + chr1_3:4345706-4345725 Msa0098410:intron 40.0%
AGATTGACCCATACAAAGAC+AGG - chr1_3:4345716-4345735 None:intergenic 40.0%
GATATGTCCTTGTGCTTTCT+GGG + chr1_3:4345816-4345835 Msa0098410:intron 40.0%
ATATGTCCTTGTGCTTTCTG+GGG + chr1_3:4345817-4345836 Msa0098410:intron 40.0%
TGACTTCCTGACTGCTTTAT+TGG + chr1_3:4345864-4345883 Msa0098410:CDS 40.0%
TAAGCACCAATAAAGCAGTC+AGG - chr1_3:4345873-4345892 None:intergenic 40.0%
TATGATGGTACTTACCAGCA+AGG - chr1_3:4345945-4345964 None:intergenic 40.0%
AGTTTCATGGAGAAAAGGAG+AGG - chr1_3:4346027-4346046 None:intergenic 40.0%
TCAGTTAAACCTATGCCAAG+TGG - chr1_3:4346094-4346113 None:intergenic 40.0%
GTGTGGGATCCTATCTAAAA+GGG - chr1_3:4346239-4346258 None:intergenic 40.0%
AGTGTGGGATCCTATCTAAA+AGG - chr1_3:4346240-4346259 None:intergenic 40.0%
!! CATGAGTTTAGTTCTGTGCT+TGG - chr1_3:4346311-4346330 None:intergenic 40.0%
TGCCGAACCAAAAATACTGT+CGG - chr1_3:4346387-4346406 None:intergenic 40.0%
! CTTTGAAAAGGGCTACTACT+TGG + chr1_3:4346682-4346701 Msa0098410:intron 40.0%
! TCAACATTGGCTACAATGCT+GGG + chr1_3:4346739-4346758 Msa0098410:intron 40.0%
!! CGTTGGTAATTCGAGTTCTT+TGG + chr1_3:4346773-4346792 Msa0098410:intron 40.0%
CTGATAATCTGCTTGGTTAC+AGG + chr1_3:4347146-4347165 Msa0098410:intron 40.0%
GATCAATTGAATGGGAATGC+AGG - chr1_3:4347224-4347243 None:intergenic 40.0%
TCAATAGGAGTGGAAACACT+TGG - chr1_3:4347292-4347311 None:intergenic 40.0%
!! ATATCAGTGTCGTTGGTGAT+TGG + chr1_3:4347456-4347475 Msa0098410:intron 40.0%
TGGTGATTGGATTCTGACTA+TGG + chr1_3:4347469-4347488 Msa0098410:intron 40.0%
CGAAAGAGACTACGCATAAT+TGG - chr1_3:4347505-4347524 None:intergenic 40.0%
!! GAACACGGATTGGCAATATT+TGG + chr1_3:4347616-4347635 Msa0098410:CDS 40.0%
! GGATTGGCAATATTTGGTTG+TGG + chr1_3:4347622-4347641 Msa0098410:CDS 40.0%
GCAATATTTGGTTGTGGAAC+TGG + chr1_3:4347628-4347647 Msa0098410:CDS 40.0%
AAAAAGGGATGTTTGACCAC+CGG - chr1_3:4347706-4347725 None:intergenic 40.0%
! TCTATACATGGAGGGTTTTC+AGG + chr1_3:4347730-4347749 Msa0098410:CDS 40.0%
AAAAAGGGATGTTCAACCAC+CGG - chr1_3:4347772-4347791 None:intergenic 40.0%
TGTAGAGATGCATGATACTG+TGG + chr1_3:4347840-4347859 Msa0098410:CDS 40.0%
GCAACTAGAAAACGCAAAGA+AGG + chr1_3:4347913-4347932 Msa0098410:CDS 40.0%
! TCACTGTTGCTTGAATGTAC+AGG - chr1_3:4348013-4348032 None:intergenic 40.0%
ACAACCACTCCCTAAAACCT+AGG + chr1_3:4344051-4344070 Msa0098410:five_prime_UTR 45.0%
CAACCACTCCCTAAAACCTA+GGG + chr1_3:4344052-4344071 Msa0098410:five_prime_UTR 45.0%
!!! AAACCCTAGGTTTTAGGGAG+TGG - chr1_3:4344058-4344077 None:intergenic 45.0%
TGGTGAGAGAGAAAAACCCT+AGG - chr1_3:4344071-4344090 None:intergenic 45.0%
!!! AAAGTGGGGGGTGTTTTGAA+GGG - chr1_3:4344141-4344160 None:intergenic 45.0%
!!! TAAAGTGGGGGGTGTTTTGA+AGG - chr1_3:4344142-4344161 None:intergenic 45.0%
!! TTGGTTGGTAGTAAAGTGGG+GGG - chr1_3:4344153-4344172 None:intergenic 45.0%
TGCGGTATTCGGTTAGGAAA+CGG - chr1_3:4344195-4344214 None:intergenic 45.0%
TTCCTAACCGAATACCGCAA+CGG + chr1_3:4344196-4344215 Msa0098410:CDS 45.0%
! TGAAATTGGTAGCACCGTTG+CGG - chr1_3:4344213-4344232 None:intergenic 45.0%
ACCACAGAAGTGGAATTGGT+GGG - chr1_3:4344282-4344301 None:intergenic 45.0%
AACCACAGAAGTGGAATTGG+TGG - chr1_3:4344283-4344302 None:intergenic 45.0%
GCTGAATAGAACCACAGAAG+TGG - chr1_3:4344292-4344311 None:intergenic 45.0%
! AACTTCACTGGTTGCGGTTA+AGG + chr1_3:4344351-4344370 Msa0098410:CDS 45.0%
! ACTTCACTGGTTGCGGTTAA+GGG + chr1_3:4344352-4344371 Msa0098410:CDS 45.0%
GAGTGAAATTGAGGGTTTGG+TGG + chr1_3:4344492-4344511 Msa0098410:CDS 45.0%
!! GAAATTGAGGGTTTGGTGGA+AGG + chr1_3:4344496-4344515 Msa0098410:CDS 45.0%
!! AATTGAGGGTTTGGTGGAAG+GGG + chr1_3:4344498-4344517 Msa0098410:CDS 45.0%
! AATGGTGGTGATGCTAGAGT+TGG + chr1_3:4344568-4344587 Msa0098410:CDS 45.0%
! ATGGTGGTGATGCTAGAGTT+GGG + chr1_3:4344569-4344588 Msa0098410:CDS 45.0%
! TGATGCTAGAGTTGGGGTTT+TGG + chr1_3:4344576-4344595 Msa0098410:CDS 45.0%
!!! TAGAGTTGGGGTTTTGGAAG+AGG + chr1_3:4344582-4344601 Msa0098410:CDS 45.0%
!!! AGAGTTGGGGTTTTGGAAGA+GGG + chr1_3:4344583-4344602 Msa0098410:CDS 45.0%
GAACCCCATCACTCACAAAA+GGG - chr1_3:4344696-4344715 None:intergenic 45.0%
!! CTTTTGTGAGTGATGGGGTT+CGG + chr1_3:4344695-4344714 Msa0098410:CDS 45.0%
GTTCGGAAGGGGATTGAAAT+GGG + chr1_3:4344712-4344731 Msa0098410:CDS 45.0%
! GGGTTGTGAGGTTGGTTATT+TGG + chr1_3:4344732-4344751 Msa0098410:CDS 45.0%
! TGTGAGGTTGGTTATTTGGC+TGG + chr1_3:4344736-4344755 Msa0098410:CDS 45.0%
! GTGAGGTTGGTTATTTGGCT+GGG + chr1_3:4344737-4344756 Msa0098410:CDS 45.0%
! TGAGGTTGGTTATTTGGCTG+GGG + chr1_3:4344738-4344757 Msa0098410:CDS 45.0%
! TGCAGCAGTTCAGGTTATGA+CGG + chr1_3:4344849-4344868 Msa0098410:CDS 45.0%
! TTCAGGTTATGACGGGGTTT+CGG + chr1_3:4344857-4344876 Msa0098410:CDS 45.0%
! ATGGATTGCGGCTGCAATTT+AGG - chr1_3:4345061-4345080 None:intergenic 45.0%
GGATATGTCCTTGTGCTTTC+TGG + chr1_3:4345815-4345834 Msa0098410:intron 45.0%
! AAATCACCCCAGAAAGCACA+AGG - chr1_3:4345826-4345845 None:intergenic 45.0%
GTGGAACAGGAGAACAAAAC+AGG - chr1_3:4346217-4346236 None:intergenic 45.0%
CCTATCTAAAAGGGTGGAAC+AGG - chr1_3:4346230-4346249 None:intergenic 45.0%
! CCTGTTCCACCCTTTTAGAT+AGG + chr1_3:4346227-4346246 Msa0098410:intron 45.0%
TGGGATCCTATCTAAAAGGG+TGG - chr1_3:4346236-4346255 None:intergenic 45.0%
! CTCAACATTGGCTACAATGC+TGG + chr1_3:4346738-4346757 Msa0098410:intron 45.0%
CTCGAATTACCAACGGAAGA+AGG - chr1_3:4346768-4346787 None:intergenic 45.0%
AGCGAAATCTTTCAGGCTGT+CGG - chr1_3:4347009-4347028 None:intergenic 45.0%
AGTCAGCTATACAGTCTGCT+AGG + chr1_3:4347051-4347070 Msa0098410:CDS 45.0%
TCTGCTTGGTTACAGGGAAA+AGG + chr1_3:4347153-4347172 Msa0098410:intron 45.0%
CTGCTTGGTTACAGGGAAAA+GGG + chr1_3:4347154-4347173 Msa0098410:intron 45.0%
TACAGGGAAAAGGGTGATCA+TGG + chr1_3:4347163-4347182 Msa0098410:intron 45.0%
ACAGGGAAAAGGGTGATCAT+GGG + chr1_3:4347164-4347183 Msa0098410:intron 45.0%
AACTGGGTTACTCGTCAAAG+CGG + chr1_3:4347244-4347263 Msa0098410:CDS 45.0%
AGCGGCATAGACAGAAAGAT+CGG + chr1_3:4347262-4347281 Msa0098410:CDS 45.0%
GAAAATGGAGGGGTAATTGG+TGG - chr1_3:4347330-4347349 None:intergenic 45.0%
AAGAACTGTGCCTATGCTTC+CGG + chr1_3:4347684-4347703 Msa0098410:CDS 45.0%
!!! GCGTTTTCTAGTTGCATCAG+TGG - chr1_3:4347908-4347927 None:intergenic 45.0%
AATTGCGCGGGAGAAGATTG+AGG - chr1_3:4344245-4344264 None:intergenic 50.0%
TGAAGTGGTGTGAATTGCGC+GGG - chr1_3:4344257-4344276 None:intergenic 50.0%
CTGAAGTGGTGTGAATTGCG+CGG - chr1_3:4344258-4344277 None:intergenic 50.0%
! TGGAATTGGTGGGTCTGAAG+TGG - chr1_3:4344272-4344291 None:intergenic 50.0%
ACCCACCAATTCCACTTCTG+TGG + chr1_3:4344278-4344297 Msa0098410:CDS 50.0%
CTGCTTGTTTCGTGTTGCGA+TGG + chr1_3:4344385-4344404 Msa0098410:CDS 50.0%
ATGGATGTGTCGCGATGAAG+AGG + chr1_3:4344404-4344423 Msa0098410:CDS 50.0%
TGTGTCGCGATGAAGAGGAT+CGG + chr1_3:4344409-4344428 Msa0098410:CDS 50.0%
! TGGTGGTGATGCTAGAGTTG+GGG + chr1_3:4344570-4344589 Msa0098410:CDS 50.0%
TGGATGGTTGATTGTGACGG+TGG + chr1_3:4344628-4344647 Msa0098410:CDS 50.0%
ATGGTTGATTGTGACGGTGG+TGG + chr1_3:4344631-4344650 Msa0098410:CDS 50.0%
CGAACCCCATCACTCACAAA+AGG - chr1_3:4344697-4344716 None:intergenic 50.0%
GGTTCGGAAGGGGATTGAAA+TGG + chr1_3:4344711-4344730 Msa0098410:CDS 50.0%
!! GGGGATTGAAATGGGTTGTG+AGG + chr1_3:4344720-4344739 Msa0098410:CDS 50.0%
! GCAGCAGTTCAGGTTATGAC+GGG + chr1_3:4344850-4344869 Msa0098410:CDS 50.0%
! CAGCAGTTCAGGTTATGACG+GGG + chr1_3:4344851-4344870 Msa0098410:CDS 50.0%
TTACCAAGTGTACAAGCGGG+TGG + chr1_3:4345125-4345144 Msa0098410:intron 50.0%
TACCAAGTGTACAAGCGGGT+GGG + chr1_3:4345126-4345145 Msa0098410:intron 50.0%
! TACAAGCGGGTGGGGTATTT+AGG + chr1_3:4345135-4345154 Msa0098410:intron 50.0%
AGGAGACAACTCTACGTGGA+TGG - chr1_3:4345696-4345715 None:intergenic 50.0%
AGACAGGAGACAACTCTACG+TGG - chr1_3:4345700-4345719 None:intergenic 50.0%
AAGGAGATCACTGGCAAAGC+TGG - chr1_3:4345926-4345945 None:intergenic 50.0%
TTTGCCAGTGATCTCCTTGC+TGG + chr1_3:4345928-4345947 Msa0098410:CDS 50.0%
CTTACCAGCAAGGAGATCAC+TGG - chr1_3:4345935-4345954 None:intergenic 50.0%
AGCCATCTTACTCGTCCACT+TGG + chr1_3:4346076-4346095 Msa0098410:intron 50.0%
TGCCAAGTGGACGAGTAAGA+TGG - chr1_3:4346081-4346100 None:intergenic 50.0%
CTTACTCGTCCACTTGGCAT+AGG + chr1_3:4346082-4346101 Msa0098410:intron 50.0%
ACCTCTCTATAAAGGGGCAG+TGG - chr1_3:4346142-4346161 None:intergenic 50.0%
TAGGTCACTCAGGAGAGATG+AGG + chr1_3:4346435-4346454 Msa0098410:intron 50.0%
AGGTCACTCAGGAGAGATGA+GGG + chr1_3:4346436-4346455 Msa0098410:intron 50.0%
! AGAATGGCTTCTAGCTGCTG+AGG + chr1_3:4347594-4347613 Msa0098410:intron 50.0%
! CTTCTAGCTGCTGAGGAACA+CGG + chr1_3:4347601-4347620 Msa0098410:CDS 50.0%
! AACTGGCAAGCATCGTGCAA+AGG + chr1_3:4347645-4347664 Msa0098410:CDS 50.0%
! TGTTTGACCACCGGAAGCAT+AGG - chr1_3:4347697-4347716 None:intergenic 50.0%
AGGAACTGTGCCTATGCTTC+CGG + chr1_3:4347750-4347769 Msa0098410:CDS 50.0%
! TGTTCAACCACCGGAAGCAT+AGG - chr1_3:4347763-4347782 None:intergenic 50.0%
CACCGTTGCGGTATTCGGTT+AGG - chr1_3:4344201-4344220 None:intergenic 55.0%
GGTAGCACCGTTGCGGTATT+CGG - chr1_3:4344206-4344225 None:intergenic 55.0%
!!! GATCGGTGTTTTAGCGCCGT+TGG + chr1_3:4344426-4344445 Msa0098410:CDS 55.0%
! TGTGACGGTGGTGGTGAATC+TGG + chr1_3:4344640-4344659 Msa0098410:CDS 55.0%
! GTGACGGTGGTGGTGAATCT+GGG + chr1_3:4344641-4344660 Msa0098410:CDS 55.0%
! TGACGGTGGTGGTGAATCTG+GGG + chr1_3:4344642-4344661 Msa0098410:CDS 55.0%
! TGTGAGTGATGGGGTTCGGA+AGG + chr1_3:4344699-4344718 Msa0098410:CDS 55.0%
! GTGAGTGATGGGGTTCGGAA+GGG + chr1_3:4344700-4344719 Msa0098410:CDS 55.0%
! TGAGTGATGGGGTTCGGAAG+GGG + chr1_3:4344701-4344720 Msa0098410:CDS 55.0%
GTTGCATGCTGCAGCAGTTC+AGG + chr1_3:4344840-4344859 Msa0098410:CDS 55.0%
ACCAAGTGTACAAGCGGGTG+GGG + chr1_3:4345127-4345146 Msa0098410:intron 55.0%
GCCACTGCCCCTTTATAGAG+AGG + chr1_3:4346138-4346157 Msa0098410:CDS 55.0%
GGGAATGCAGGACCTACAGA+AGG - chr1_3:4347212-4347231 None:intergenic 55.0%
AGCTGCTGAGGAACACGGAT+TGG + chr1_3:4347606-4347625 Msa0098410:CDS 55.0%
AACTGTGCCTATGCTTCCGG+TGG + chr1_3:4347687-4347706 Msa0098410:CDS 55.0%
AACTGTGCCTATGCTTCCGG+TGG + chr1_3:4347687-4347706 Msa0098410:CDS 55.0%
GTGGACGCCGTAAGTTTGTC+TGG + chr1_3:4347859-4347878 Msa0098410:CDS 55.0%
! GGTGGTGGTGAATCTGGGGT+TGG + chr1_3:4344646-4344665 Msa0098410:CDS 60.0%
! GGTGGTGAATCTGGGGTTGG+TGG + chr1_3:4344649-4344668 Msa0098410:CDS 60.0%
ACCCCACCCGCTTGTACACT+TGG - chr1_3:4345131-4345150 None:intergenic 60.0%
! TTTGAGGCGGGGATCGCGAG+AGG + chr1_3:4344802-4344821 Msa0098410:CDS 65.0%
TTGAGGCGGGGATCGCGAGA+GGG + chr1_3:4344803-4344822 Msa0098410:CDS 65.0%
GCTGGGCAGCCTTCTTCCGT+TGG + chr1_3:4346756-4346775 Msa0098410:intron 65.0%
TGAGGCGGGGATCGCGAGAG+GGG + chr1_3:4344804-4344823 Msa0098410:CDS 70.0%
GGGGATCGCGAGAGGGGAGA+AGG + chr1_3:4344810-4344829 Msa0098410:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 4344015 4348032 4344015 ID=Msa0098410;Name=Msa0098410
chr1_3 mRNA 4344015 4348032 4344015 ID=Msa0098410-mRNA-1;Parent=Msa0098410;Name=Msa0098410-mRNA-1;_AED=0.17;_eAED=0.19;_QI=109|0.4|0.5|1|1|1|6|0|559
chr1_3 exon 4344015 4344895 4344015 ID=Msa0098410-mRNA-1:exon:1444;Parent=Msa0098410-mRNA-1
chr1_3 exon 4345854 4345949 4345854 ID=Msa0098410-mRNA-1:exon:1445;Parent=Msa0098410-mRNA-1
chr1_3 exon 4346104 4346159 4346104 ID=Msa0098410-mRNA-1:exon:1446;Parent=Msa0098410-mRNA-1
chr1_3 exon 4346906 4347072 4346906 ID=Msa0098410-mRNA-1:exon:1447;Parent=Msa0098410-mRNA-1
chr1_3 exon 4347168 4347319 4347168 ID=Msa0098410-mRNA-1:exon:1448;Parent=Msa0098410-mRNA-1
chr1_3 exon 4347596 4348032 4347596 ID=Msa0098410-mRNA-1:exon:1449;Parent=Msa0098410-mRNA-1
chr1_3 five_prime_UTR 4344015 4344123 4344015 ID=Msa0098410-mRNA-1:five_prime_utr;Parent=Msa0098410-mRNA-1
chr1_3 CDS 4344124 4344895 4344124 ID=Msa0098410-mRNA-1:cds;Parent=Msa0098410-mRNA-1
chr1_3 CDS 4345854 4345949 4345854 ID=Msa0098410-mRNA-1:cds;Parent=Msa0098410-mRNA-1
chr1_3 CDS 4346104 4346159 4346104 ID=Msa0098410-mRNA-1:cds;Parent=Msa0098410-mRNA-1
chr1_3 CDS 4346906 4347072 4346906 ID=Msa0098410-mRNA-1:cds;Parent=Msa0098410-mRNA-1
chr1_3 CDS 4347168 4347319 4347168 ID=Msa0098410-mRNA-1:cds;Parent=Msa0098410-mRNA-1
chr1_3 CDS 4347596 4348032 4347596 ID=Msa0098410-mRNA-1:cds;Parent=Msa0098410-mRNA-1
Gene Sequence

>Msa0098410

ATGGACACACAAAACCCTTCAAAACACCCCCCACTTTACTACCAACCAATGCTCAAAGAATCAATCAACCGTTTCCTAACCGAATACCGCAACGGTGCTACCAATTTCACCGATTTCACCTCAATCTTCTCCCGCGCAATTCACACCACTTCAGACCCACCAATTCCACTTCTGTGGTTCTATTCAGCCCTTGAATTTCATACTAATAGGTTAAGAGAAGCTTCTAGAACTTCACTGGTTGCGGTTAAGGGTTTGTTTCAGCTGCTTGTTTCGTGTTGCGATGGATGTGTCGCGATGAAGAGGATCGGTGTTTTAGCGCCGTTGGTGTTTGAGATTTATCGTTTGATGGGTTGTGGGGAAGAAGTGAAGAGTGAAATTGAGGGTTTGGTGGAAGGGGTTGTGAGTTATTGTAGCATTTATTGTATGAAGAGTGAAGTTGAGGTTAATGGTGGTGATGCTAGAGTTGGGGTTTTGGAAGAGGGTTTTGTTGATTTGATACCGGTTTGGATGGTTGATTGTGACGGTGGTGGTGAATCTGGGGTTGGTGGTGATTGTTTGAAAGGGTTTTTCCCTTTTGTGAGTGATGGGGTTCGGAAGGGGATTGAAATGGGTTGTGAGGTTGGTTATTTGGCTGGGGTTGTTATGTTTGAAGCTCTTTTGTTGAAAATGTGTTTGATTTTTGAGGCGGGGATCGCGAGAGGGGAGAAGGAGAAGAAGTTGCATGCTGCAGCAGTTCAGGTTATGACGGGGTTTCGGAATTTTTACTTTTTGGTTTTCATTTATGACTTCCTGACTGCTTTATTGGTGCTTATCAGATATGCTTTTGAGGATGATGTTGGAGCCAGCTTTGCCAGTGATCTCCTTGCTGGTTTAACTGAAGCTGAAGCCAATCATATTATGATGCCACTGCCCCTTTATAGAGAGGGTTCTGACAACGAAGTTCTTTTAAAAGAAGCCCTGTACTATTCTGTGATGATGATGGATTATTCATTCATTAATTGTCAAGCTGGAGTTTCTTTGTATGCCGACAGCCTGAAAGATTTCGCTATCAATTGGTTGTTTGTTGCTGAGTCAGCTATACAGTCTGCTAGGGAAAAGGGTGATCATGGGAAAGCTACTTCTTATGTAAATTCCTTCTGTAGGTCCTGCATTCCCATTCAATTGATCAACTGGGTTACTCGTCAAAGCGGCATAGACAGAAAGATCGGCAGACCAAGTGTTTCCACTCCTATTGATCTTATAAAATGGCTTCTAGCTGCTGAGGAACACGGATTGGCAATATTTGGTTGTGGAACTGGCAAGCATCGTGCAAAGGCTTTCGTTTTCACTTCAAGAACTGTGCCTATGCTTCCGGTGGTCAAACATCCCTTTTTAAGTTCTATACATGGAGGGTTTTCAGGAACTGTGCCTATGCTTCCGGTGGTTGAACATCCCTTTTTAACTTCTATACATGGAGGGTTCGTGACAGATAGAGTTCGTGCTAGTGATGTAGAGATGCATGATACTGTGGACGCCGTAAGTTTGTCTGGTGATGATAGAATGAGCACATTCACCACTGATGCAACTAGAAAACGCAAAGAAGGAATTGAGGATGATACAAAAGTACAGCTAAAGTATATGAGATGTCAGTTGCATGAGAATGCAGTGAGAGAAAACTCCTGTACATTCAAGCAACAGTGA

Protein sequence

>Msa0098410

MDTQNPSKHPPLYYQPMLKESINRFLTEYRNGATNFTDFTSIFSRAIHTTSDPPIPLLWFYSALEFHTNRLREASRTSLVAVKGLFQLLVSCCDGCVAMKRIGVLAPLVFEIYRLMGCGEEVKSEIEGLVEGVVSYCSIYCMKSEVEVNGGDARVGVLEEGFVDLIPVWMVDCDGGGESGVGGDCLKGFFPFVSDGVRKGIEMGCEVGYLAGVVMFEALLLKMCLIFEAGIARGEKEKKLHAAAVQVMTGFRNFYFLVFIYDFLTALLVLIRYAFEDDVGASFASDLLAGLTEAEANHIMMPLPLYREGSDNEVLLKEALYYSVMMMDYSFINCQAGVSLYADSLKDFAINWLFVAESAIQSAREKGDHGKATSYVNSFCRSCIPIQLINWVTRQSGIDRKIGRPSVSTPIDLIKWLLAAEEHGLAIFGCGTGKHRAKAFVFTSRTVPMLPVVKHPFLSSIHGGFSGTVPMLPVVEHPFLTSIHGGFVTDRVRASDVEMHDTVDAVSLSGDDRMSTFTTDATRKRKEGIEDDTKVQLKYMRCQLHENAVRENSCTFKQQ*