Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008680 | sp|Q1H5E9|PRDA1_ARATH | 75.329 | 304 | 53 | 2 | 1 | 300 | 112 | 397 | 1.67e-161 | 458 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008680 | Msa0057530 | 0.824735 | 6.869568e-54 | -8.615850e-47 |
| Msa0008680 | Msa0159610 | 0.830300 | 3.173748e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008680 | MtrunA17_Chr1g0146581 | 92.027 | 301 | 6 | 1 | 1 | 301 | 110 | 392 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0008680 | AT5G48470.1 | 75.329 | 304 | 53 | 2 | 1 | 300 | 112 | 397 | 1.70e-162 | 458 |
Find 80 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAACTTCTTAACTAAAT+TGG | 0.216407 | 1_1:+12540147 | Msa0008680:CDS |
| GCTGGTGGCGGTTTATTTAA+AGG | 0.239511 | 1_1:+12539498 | Msa0008680:CDS |
| ATTAAAACTGTTGGCATTGC+AGG | 0.291319 | 1_1:+12540126 | Msa0008680:CDS |
| TTGGCTGCACAAGGAGTTAT+TGG | 0.297509 | 1_1:+12538908 | Msa0008680:CDS |
| CCAGGCTGATGATTTATTAG+AGG | 0.340782 | 1_1:+12539575 | Msa0008680:CDS |
| AAAGACACTTGAAGTCCTTC+AGG | 0.380892 | 1_1:+12541238 | Msa0008680:CDS |
| TGGTATCACTGCACAACATC+TGG | 0.381522 | 1_1:+12540743 | Msa0008680:CDS |
| GTTTCTCGAAACAGTCTCTA+AGG | 0.386239 | 1_1:+12540443 | Msa0008680:CDS |
| TCTATGTAGAACTCCCAAAA+AGG | 0.407720 | 1_1:+12539443 | Msa0008680:CDS |
| TCCAATTCAACTCACCCTTC+CGG | 0.409237 | 1_1:-12540287 | None:intergenic |
| AGGGTTTCAGTAGGATTTGC+CGG | 0.413244 | 1_1:+12540268 | Msa0008680:CDS |
| CGCCGAGTTGCAGCTGGTGG+CGG | 0.436206 | 1_1:+12539486 | Msa0008680:CDS |
| AGAAGAAGCTCGTGATATGA+TGG | 0.440285 | 1_1:+12539899 | Msa0008680:CDS |
| TTCGGCATCATTAAAACTGT+TGG | 0.441281 | 1_1:+12540117 | Msa0008680:CDS |
| GTCTTGTCTGGTATATATGC+TGG | 0.441648 | 1_1:+12540711 | Msa0008680:CDS |
| AAATTGGTGGCCTTAAAACC+TGG | 0.455899 | 1_1:+12540163 | Msa0008680:CDS |
| TCAGTTGGAAGATATGGATA+TGG | 0.459065 | 1_1:+12538856 | None:intergenic |
| AGAAACATGCCCGGGCGTAC+AGG | 0.472167 | 1_1:-12540426 | None:intergenic |
| GATATCCAGGCAAGTGTGAC+AGG | 0.482176 | 1_1:+12540390 | Msa0008680:intron |
| CAAGGTCGATCATGTAATCA+AGG | 0.486722 | 1_1:-12538970 | None:intergenic |
| CACTGCACAACATCTGGAAT+GGG | 0.487263 | 1_1:+12540749 | Msa0008680:CDS |
| TTATATTATTCACTTTGTAA+AGG | 0.487995 | 1_1:-12541434 | None:intergenic |
| ATGCCCGGGCGTACAGGATG+TGG | 0.493271 | 1_1:-12540420 | None:intergenic |
| AAGAAGTTCCTTACCTGGGG+TGG | 0.495817 | 1_1:-12539320 | None:intergenic |
| ATATCCAGCACAACTTTCCC+AGG | 0.498084 | 1_1:-12540181 | None:intergenic |
| CATGATCGACCTTGCTGAGA+AGG | 0.506824 | 1_1:+12538979 | Msa0008680:CDS |
| GAAGCCACATCCTGTACGCC+CGG | 0.507103 | 1_1:+12540416 | Msa0008680:CDS |
| CAGATCGAAAACTGCTTGCA+AGG | 0.510311 | 1_1:+12539862 | Msa0008680:CDS |
| TGTCATTTAGATTTGCCCCT+GGG | 0.513084 | 1_1:-12539545 | None:intergenic |
| GATGCAGCGCAAGTCACTGT+TGG | 0.515901 | 1_1:+12539253 | Msa0008680:intron |
| TGAGAAGGACCAGGATGATA+AGG | 0.516393 | 1_1:+12538994 | Msa0008680:CDS |
| TCACTGCACAACATCTGGAA+TGG | 0.520829 | 1_1:+12540748 | Msa0008680:CDS |
| AAAACCTGGGAAAGTTGTGC+TGG | 0.524406 | 1_1:+12540177 | Msa0008680:CDS |
| TGAGAAAGTAGCAGTGGAGT+TGG | 0.529397 | 1_1:+12538889 | Msa0008680:CDS |
| ATATACTCTACCTCCGGCTG+AGG | 0.542581 | 1_1:+12539959 | Msa0008680:CDS |
| CTGGCAACGATGATGATGAC+AGG | 0.544853 | 1_1:+12540248 | Msa0008680:CDS |
| TCACATCAACATACCTCAGC+CGG | 0.548413 | 1_1:-12539972 | None:intergenic |
| TTGTTACGCCGAGTTGCAGC+TGG | 0.549323 | 1_1:+12539480 | Msa0008680:CDS |
| GAACTTCTTAACTAAATTGG+TGG | 0.554110 | 1_1:+12540150 | Msa0008680:CDS |
| AAAATCACACCTTATCATCC+TGG | 0.554236 | 1_1:-12539003 | None:intergenic |
| GACTTGAAGATTCATATCCC+AGG | 0.555335 | 1_1:+12539528 | Msa0008680:CDS |
| TTCAGTAGGATTTGCCGGAA+GGG | 0.555402 | 1_1:+12540273 | Msa0008680:CDS |
| AGCTCGTGATATGATGGGAG+GGG | 0.555993 | 1_1:+12539905 | Msa0008680:CDS |
| TTTCAGTAGGATTTGCCGGA+AGG | 0.556491 | 1_1:+12540272 | Msa0008680:CDS |
| CGACCTTGCTGAGAAGGACC+AGG | 0.558031 | 1_1:+12538985 | Msa0008680:CDS |
| ATGATAAGAAATGTGATGCT+CGG | 0.559415 | 1_1:+12540202 | Msa0008680:CDS |
| TCTAAATGACATAGCTAACC+AGG | 0.561777 | 1_1:+12539557 | Msa0008680:CDS |
| AGAAGTTCCTTACCTGGGGT+GGG | 0.562953 | 1_1:-12539319 | None:intergenic |
| TGGATTATATACTCTACCTC+CGG | 0.568191 | 1_1:+12539953 | Msa0008680:CDS |
| ATGTCATTTAGATTTGCCCC+TGG | 0.570026 | 1_1:-12539546 | None:intergenic |
| AACCGCCACCAGCTGCAACT+CGG | 0.572890 | 1_1:-12539488 | None:intergenic |
| GCTCGTGATATGATGGGAGG+GGG | 0.574590 | 1_1:+12539906 | Msa0008680:CDS |
| CTGTTTCGAGAAACATGCCC+GGG | 0.576547 | 1_1:-12540434 | None:intergenic |
| TGGTAAGAGAGTTGATCAGA+TGG | 0.580714 | 1_1:+12538928 | Msa0008680:CDS |
| CCTCTAATAAATCATCAGCC+TGG | 0.582816 | 1_1:-12539575 | None:intergenic |
| AGAATCTGAGAAAGTAGCAG+TGG | 0.584761 | 1_1:+12538883 | Msa0008680:CDS |
| GAAGAAGCTCGTGATATGAT+GGG | 0.589763 | 1_1:+12539900 | Msa0008680:CDS |
| GCAGTGGAGTTGGCTGCACA+AGG | 0.598277 | 1_1:+12538899 | Msa0008680:CDS |
| GATGATGACAGGGTTTCAGT+AGG | 0.598496 | 1_1:+12540259 | Msa0008680:CDS |
| TCCAGGCAAGTGTGACAGGA+CGG | 0.598526 | 1_1:+12540394 | Msa0008680:intron |
| ACTTGAAGATTCATATCCCA+GGG | 0.598867 | 1_1:+12539529 | Msa0008680:CDS |
| AATTGGTGGCCTTAAAACCT+GGG | 0.600896 | 1_1:+12540164 | Msa0008680:CDS |
| TTACGCCGAGTTGCAGCTGG+TGG | 0.603081 | 1_1:+12539483 | Msa0008680:CDS |
| GATGGAATCTGATTTCATGA+TGG | 0.604669 | 1_1:+12538946 | Msa0008680:CDS |
| ACTGTTTCGAGAAACATGCC+CGG | 0.605216 | 1_1:-12540435 | None:intergenic |
| AGTTAAATGCTATCTCCTGA+AGG | 0.608001 | 1_1:-12541253 | None:intergenic |
| AAGCTCGTGATATGATGGGA+GGG | 0.609289 | 1_1:+12539904 | Msa0008680:CDS |
| CATCCTGGTCCTTCTCAGCA+AGG | 0.614327 | 1_1:-12538988 | None:intergenic |
| GTGATGCTCGGAAAAGATGA+AGG | 0.623308 | 1_1:+12540214 | Msa0008680:CDS |
| AAGCCACATCCTGTACGCCC+GGG | 0.634835 | 1_1:+12540417 | Msa0008680:CDS |
| AAGGTCGATCATGTAATCAA+GGG | 0.636967 | 1_1:-12538969 | None:intergenic |
| CTCGTGATATGATGGGAGGG+GGG | 0.642959 | 1_1:+12539907 | Msa0008680:CDS |
| GAGGTAGAGTATATAATCCA+CGG | 0.643703 | 1_1:-12539950 | None:intergenic |
| GAAGCTCGTGATATGATGGG+AGG | 0.646611 | 1_1:+12539903 | Msa0008680:CDS |
| GATGAAGGTGCAGACAACAC+TGG | 0.647546 | 1_1:+12540229 | Msa0008680:CDS |
| TTGGACGAAAGAAATGACCG+TGG | 0.661469 | 1_1:+12539933 | Msa0008680:CDS |
| TGGCAACGATGATGATGACA+GGG | 0.681533 | 1_1:+12540249 | Msa0008680:CDS |
| CATCAACATACCTCAGCCGG+AGG | 0.697012 | 1_1:-12539969 | None:intergenic |
| ATATATGCTGGATCTGACAA+TGG | 0.706008 | 1_1:+12540723 | Msa0008680:CDS |
| CTTGAAGATTCATATCCCAG+GGG | 0.774008 | 1_1:+12539530 | Msa0008680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATAAAAATAAT+AGG | - | chr1_1:12541316-12541335 | None:intergenic | 0.0% |
| !!! | TATTTTTATTTTTTTTTTTA+TGG | + | chr1_1:12541318-12541337 | Msa0008680:three_prime_UTR | 0.0% |
| !! | AATAAAAATAATAGGATTAT+AGG | - | chr1_1:12541308-12541327 | None:intergenic | 10.0% |
| !! | ACATATAATTGTAAAATACT+TGG | + | chr1_1:12540516-12540535 | Msa0008680:intron | 15.0% |
| !! | TTTGAAAATAGAAACATTTA+TGG | - | chr1_1:12540800-12540819 | None:intergenic | 15.0% |
| !! | TTATATTATTCACTTTGTAA+AGG | - | chr1_1:12541437-12541456 | None:intergenic | 15.0% |
| !! | AGATAGTAATAGATTATAGT+TGG | - | chr1_1:12539099-12539118 | None:intergenic | 20.0% |
| !! | AATCTATTACTATCTACATT+TGG | + | chr1_1:12539104-12539123 | Msa0008680:intron | 20.0% |
| !!! | AAATGGTATTTTGGTTAATT+TGG | - | chr1_1:12539168-12539187 | None:intergenic | 20.0% |
| !! | TTAAATCTATACATATCTAG+TGG | - | chr1_1:12540064-12540083 | None:intergenic | 20.0% |
| !! | ACCATTCATCATAAAAAATA+TGG | - | chr1_1:12540479-12540498 | None:intergenic | 20.0% |
| !! | ATATATCAATAACTGAGTAT+GGG | - | chr1_1:12540600-12540619 | None:intergenic | 20.0% |
| !! | TATATATCAATAACTGAGTA+TGG | - | chr1_1:12540601-12540620 | None:intergenic | 20.0% |
| !! | AATAGAAACATTTATGGATT+TGG | - | chr1_1:12540794-12540813 | None:intergenic | 20.0% |
| !! | TAGAAATAGATATTTATGAC+AGG | - | chr1_1:12540841-12540860 | None:intergenic | 20.0% |
| !!! | TTGTTTCTTCATGTTATATT+TGG | + | chr1_1:12541011-12541030 | Msa0008680:intron | 20.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | + | chr1_1:12539417-12539436 | Msa0008680:intron | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | - | chr1_1:12539640-12539659 | None:intergenic | 25.0% |
| !! | AACAGTGTTTAAAATTCATG+TGG | - | chr1_1:12539800-12539819 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | + | chr1_1:12539821-12539840 | Msa0008680:intron | 25.0% |
| !! | ATTCTGTTGTTTGTGTTAAA+AGG | + | chr1_1:12540026-12540045 | Msa0008680:intron | 25.0% |
| !! | TTCTGTTGTTTGTGTTAAAA+GGG | + | chr1_1:12540027-12540046 | Msa0008680:intron | 25.0% |
| !!! | GCCATATTTTTTATGATGAA+TGG | + | chr1_1:12540475-12540494 | Msa0008680:intron | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | + | chr1_1:12540542-12540561 | Msa0008680:intron | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | + | chr1_1:12540543-12540562 | Msa0008680:intron | 25.0% |
| ! | GTTATCAAAGTAAAACAGTT+TGG | - | chr1_1:12540572-12540591 | None:intergenic | 25.0% |
| ! | TGTATGATAGAGTAATAATC+AGG | - | chr1_1:12540625-12540644 | None:intergenic | 25.0% |
| !!! | TGGCTTGTTACTTTATAATA+TGG | - | chr1_1:12541151-12541170 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGTGAAGAAGTA+TGG | + | chr1_1:12541331-12541350 | Msa0008680:three_prime_UTR | 25.0% |
| ! | TTGGTTAATTTGGTCTGTTA+GGG | - | chr1_1:12539158-12539177 | None:intergenic | 30.0% |
| ! | TTTGGTTAATTTGGTCTGTT+AGG | - | chr1_1:12539159-12539178 | None:intergenic | 30.0% |
| ! | TTGCAATTATTAAGCTTGCT+AGG | - | chr1_1:12539193-12539212 | None:intergenic | 30.0% |
| ATCGAAATATATGCACAGTT+AGG | - | chr1_1:12539236-12539255 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+TGG | - | chr1_1:12539379-12539398 | None:intergenic | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | - | chr1_1:12539414-12539433 | None:intergenic | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | - | chr1_1:12539415-12539434 | None:intergenic | 30.0% | |
| ! | TCATATCTGCTTTCCTTTTT+GGG | - | chr1_1:12539459-12539478 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | - | chr1_1:12539460-12539479 | None:intergenic | 30.0% |
| GTGAAAAATAATTCTTGCCA+AGG | + | chr1_1:12539771-12539790 | Msa0008680:intron | 30.0% | |
| TAAAATTCATGTGGTTTCCT+TGG | - | chr1_1:12539791-12539810 | None:intergenic | 30.0% | |
| CGTTGCAAAAAATATGCTTT+CGG | + | chr1_1:12540099-12540118 | Msa0008680:CDS | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | + | chr1_1:12540147-12540166 | Msa0008680:CDS | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | + | chr1_1:12540150-12540169 | Msa0008680:CDS | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | + | chr1_1:12540202-12540221 | Msa0008680:CDS | 30.0% | |
| !!! | GATACTTTTCTATTTTTGCC+AGG | + | chr1_1:12540689-12540708 | Msa0008680:intron | 30.0% |
| TCCATGGGATAATTAAAGAT+CGG | - | chr1_1:12540929-12540948 | None:intergenic | 30.0% | |
| ATCTTTAATTATCCCATGGA+AGG | + | chr1_1:12540929-12540948 | Msa0008680:intron | 30.0% | |
| ! | CATTTTCATTTAGCTACAAG+TGG | - | chr1_1:12541074-12541093 | None:intergenic | 30.0% |
| TTGTAGCTAAATGAAAATGC+AGG | + | chr1_1:12541075-12541094 | Msa0008680:intron | 30.0% | |
| TTCGAACGAAAAACAAAGTT+TGG | + | chr1_1:12541107-12541126 | Msa0008680:intron | 30.0% | |
| AGTGGATCATGATGATTAAA+TGG | - | chr1_1:12541171-12541190 | None:intergenic | 30.0% | |
| AAAAGACATAAGTCATTCAG+TGG | - | chr1_1:12541189-12541208 | None:intergenic | 30.0% | |
| GATGGAATCTGATTTCATGA+TGG | + | chr1_1:12538946-12538965 | Msa0008680:CDS | 35.0% | |
| AAGGTCGATCATGTAATCAA+GGG | - | chr1_1:12538972-12538991 | None:intergenic | 35.0% | |
| AAAATCACACCTTATCATCC+TGG | - | chr1_1:12539006-12539025 | None:intergenic | 35.0% | |
| ! | TGCTAGGCTAAATGGTATTT+TGG | - | chr1_1:12539177-12539196 | None:intergenic | 35.0% |
| !! | ATTAAGCTTGCTAGGCTAAA+TGG | - | chr1_1:12539185-12539204 | None:intergenic | 35.0% |
| TTAAAGAAGTTCCTTACCTG+GGG | - | chr1_1:12539326-12539345 | None:intergenic | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | - | chr1_1:12539327-12539346 | None:intergenic | 35.0% | |
| TCTATGTAGAACTCCCAAAA+AGG | + | chr1_1:12539443-12539462 | Msa0008680:CDS | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | + | chr1_1:12539529-12539548 | Msa0008680:CDS | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | + | chr1_1:12539557-12539576 | Msa0008680:CDS | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | + | chr1_1:12539683-12539702 | Msa0008680:intron | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | + | chr1_1:12539696-12539715 | Msa0008680:intron | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | + | chr1_1:12539700-12539719 | Msa0008680:intron | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | - | chr1_1:12539953-12539972 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | + | chr1_1:12539953-12539972 | Msa0008680:CDS | 35.0% | |
| TTGTTTGTGTTAAAAGGGCT+TGG | + | chr1_1:12540032-12540051 | Msa0008680:intron | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | + | chr1_1:12540117-12540136 | Msa0008680:CDS | 35.0% | |
| ATTAAAACTGTTGGCATTGC+AGG | + | chr1_1:12540126-12540145 | Msa0008680:CDS | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | + | chr1_1:12540723-12540742 | Msa0008680:CDS | 35.0% | |
| ACCGATCTTTAATTATCCCA+TGG | + | chr1_1:12540925-12540944 | Msa0008680:intron | 35.0% | |
| TAACTAGGTGCTAAATCAGT+GGG | + | chr1_1:12540952-12540971 | Msa0008680:intron | 35.0% | |
| TTAGCTACAAGTGGTATTTG+TGG | - | chr1_1:12541065-12541084 | None:intergenic | 35.0% | |
| AGTTAAATGCTATCTCCTGA+AGG | - | chr1_1:12541256-12541275 | None:intergenic | 35.0% | |
| AGAATCTGAGAAAGTAGCAG+TGG | + | chr1_1:12538883-12538902 | Msa0008680:CDS | 40.0% | |
| ! | TGGTAAGAGAGTTGATCAGA+TGG | + | chr1_1:12538928-12538947 | Msa0008680:CDS | 40.0% |
| CAAGGTCGATCATGTAATCA+AGG | - | chr1_1:12538973-12538992 | None:intergenic | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | - | chr1_1:12539071-12539090 | None:intergenic | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | + | chr1_1:12539070-12539089 | Msa0008680:intron | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | - | chr1_1:12539083-12539102 | None:intergenic | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | - | chr1_1:12539328-12539347 | None:intergenic | 40.0% | |
| !! | TCAGAAAAGTGTTCGAGAAG+TGG | - | chr1_1:12539350-12539369 | None:intergenic | 40.0% |
| ! | AACTCCTCCCTTCATCTTTT+AGG | + | chr1_1:12539404-12539423 | Msa0008680:intron | 40.0% |
| TGAACCTAAAAGATGAAGGG+AGG | - | chr1_1:12539411-12539430 | None:intergenic | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | + | chr1_1:12539528-12539547 | Msa0008680:CDS | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | + | chr1_1:12539530-12539549 | Msa0008680:CDS | 40.0% | |
| ! | TGTCATTTAGATTTGCCCCT+GGG | - | chr1_1:12539548-12539567 | None:intergenic | 40.0% |
| ! | ATGTCATTTAGATTTGCCCC+TGG | - | chr1_1:12539549-12539568 | None:intergenic | 40.0% |
| CCTCTAATAAATCATCAGCC+TGG | - | chr1_1:12539578-12539597 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | + | chr1_1:12539575-12539594 | Msa0008680:CDS | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | + | chr1_1:12539699-12539718 | Msa0008680:intron | 40.0% | |
| AGAAGAAGCTCGTGATATGA+TGG | + | chr1_1:12539899-12539918 | Msa0008680:CDS | 40.0% | |
| GAAGAAGCTCGTGATATGAT+GGG | + | chr1_1:12539900-12539919 | Msa0008680:CDS | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | + | chr1_1:12540163-12540182 | Msa0008680:CDS | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | + | chr1_1:12540164-12540183 | Msa0008680:CDS | 40.0% |
| ! | CACAACTTTCCCAGGTTTTA+AGG | - | chr1_1:12540176-12540195 | None:intergenic | 40.0% |
| ACTTGTCTGTCATGATATCC+AGG | + | chr1_1:12540377-12540396 | Msa0008680:intron | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | + | chr1_1:12540443-12540462 | Msa0008680:CDS | 40.0% | |
| ! | TCAACTAGAAGTGCAAACAC+AGG | - | chr1_1:12540671-12540690 | None:intergenic | 40.0% |
| !! | TATTTTTGCCAGGTCTTGTC+TGG | + | chr1_1:12540699-12540718 | Msa0008680:intron | 40.0% |
| CATATATACCAGACAAGACC+TGG | - | chr1_1:12540710-12540729 | None:intergenic | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | + | chr1_1:12540711-12540730 | Msa0008680:CDS | 40.0% | |
| TTATCCCATGGAAGGTAACT+AGG | + | chr1_1:12540937-12540956 | Msa0008680:intron | 40.0% | |
| GTAACTAGGTGCTAAATCAG+TGG | + | chr1_1:12540951-12540970 | Msa0008680:intron | 40.0% | |
| AAGTGGTATTTGTGGCAACA+TGG | - | chr1_1:12541057-12541076 | None:intergenic | 40.0% | |
| TTTGATGAACCTGCAAGCAA+TGG | - | chr1_1:12541220-12541239 | None:intergenic | 40.0% | |
| AAAGACACTTGAAGTCCTTC+AGG | + | chr1_1:12541238-12541257 | Msa0008680:CDS | 40.0% | |
| TGAGAAAGTAGCAGTGGAGT+TGG | + | chr1_1:12538889-12538908 | Msa0008680:CDS | 45.0% | |
| TTGGCTGCACAAGGAGTTAT+TGG | + | chr1_1:12538908-12538927 | Msa0008680:CDS | 45.0% | |
| TGAGAAGGACCAGGATGATA+AGG | + | chr1_1:12538994-12539013 | Msa0008680:CDS | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | + | chr1_1:12539065-12539084 | Msa0008680:intron | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | - | chr1_1:12539078-12539097 | None:intergenic | 45.0% | |
| AACTAAAAAATGCCCACCCC+AGG | + | chr1_1:12539307-12539326 | Msa0008680:CDS | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | - | chr1_1:12539399-12539418 | None:intergenic | 45.0% | |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | + | chr1_1:12539498-12539517 | Msa0008680:CDS | 45.0% |
| ! | AGTTTTCGATCTGGCACAAC+AGG | - | chr1_1:12539855-12539874 | None:intergenic | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | - | chr1_1:12539864-12539883 | None:intergenic | 45.0% |
| CAGATCGAAAACTGCTTGCA+AGG | + | chr1_1:12539862-12539881 | Msa0008680:CDS | 45.0% | |
| ! | AAGCTCGTGATATGATGGGA+GGG | + | chr1_1:12539904-12539923 | Msa0008680:CDS | 45.0% |
| TTGGACGAAAGAAATGACCG+TGG | + | chr1_1:12539933-12539952 | Msa0008680:CDS | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | - | chr1_1:12539975-12539994 | None:intergenic | 45.0% | |
| AAAACCTGGGAAAGTTGTGC+TGG | + | chr1_1:12540177-12540196 | Msa0008680:CDS | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | - | chr1_1:12540184-12540203 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | + | chr1_1:12540214-12540233 | Msa0008680:CDS | 45.0% | |
| ! | TGGCAACGATGATGATGACA+GGG | + | chr1_1:12540249-12540268 | Msa0008680:CDS | 45.0% |
| GATGATGACAGGGTTTCAGT+AGG | + | chr1_1:12540259-12540278 | Msa0008680:CDS | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+CGG | + | chr1_1:12540268-12540287 | Msa0008680:CDS | 45.0% | |
| TTTCAGTAGGATTTGCCGGA+AGG | + | chr1_1:12540272-12540291 | Msa0008680:CDS | 45.0% | |
| TTCAGTAGGATTTGCCGGAA+GGG | + | chr1_1:12540273-12540292 | Msa0008680:CDS | 45.0% | |
| TCCAATTCAACTCACCCTTC+CGG | - | chr1_1:12540290-12540309 | None:intergenic | 45.0% | |
| ! | GTGAGTTGAATTGGATGACG+TGG | + | chr1_1:12540295-12540314 | Msa0008680:intron | 45.0% |
| ACTGTTTCGAGAAACATGCC+CGG | - | chr1_1:12540438-12540457 | None:intergenic | 45.0% | |
| TGGTATCACTGCACAACATC+TGG | + | chr1_1:12540743-12540762 | Msa0008680:CDS | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | + | chr1_1:12540748-12540767 | Msa0008680:CDS | 45.0% | |
| ! | CACTGCACAACATCTGGAAT+GGG | + | chr1_1:12540749-12540768 | Msa0008680:CDS | 45.0% |
| AGCACCTAGTTACCTTCCAT+GGG | - | chr1_1:12540944-12540963 | None:intergenic | 45.0% | |
| TAGCACCTAGTTACCTTCCA+TGG | - | chr1_1:12540945-12540964 | None:intergenic | 45.0% | |
| TGTTCCTTTCCATTGCTTGC+AGG | + | chr1_1:12541208-12541227 | Msa0008680:intron | 45.0% | |
| TGAACCTGCAAGCAATGGAA+AGG | - | chr1_1:12541215-12541234 | None:intergenic | 45.0% | |
| CATGATCGACCTTGCTGAGA+AGG | + | chr1_1:12538979-12538998 | Msa0008680:CDS | 50.0% | |
| AAAAATGCCCACCCCAGGTA+AGG | + | chr1_1:12539312-12539331 | Msa0008680:intron | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | - | chr1_1:12539322-12539341 | None:intergenic | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | - | chr1_1:12539323-12539342 | None:intergenic | 50.0% | |
| ! | GAAGCTCGTGATATGATGGG+AGG | + | chr1_1:12539903-12539922 | Msa0008680:CDS | 50.0% |
| ! | AGCTCGTGATATGATGGGAG+GGG | + | chr1_1:12539905-12539924 | Msa0008680:CDS | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | + | chr1_1:12539914-12539933 | Msa0008680:CDS | 50.0% |
| ATATACTCTACCTCCGGCTG+AGG | + | chr1_1:12539959-12539978 | Msa0008680:CDS | 50.0% | |
| ! | GATGAAGGTGCAGACAACAC+TGG | + | chr1_1:12540229-12540248 | Msa0008680:CDS | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | + | chr1_1:12540248-12540267 | Msa0008680:CDS | 50.0% |
| GATATCCAGGCAAGTGTGAC+AGG | + | chr1_1:12540390-12540409 | Msa0008680:intron | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | - | chr1_1:12540437-12540456 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | - | chr1_1:12540662-12540681 | None:intergenic | 50.0% | |
| CATCCTGGTCCTTCTCAGCA+AGG | - | chr1_1:12538991-12539010 | None:intergenic | 55.0% | |
| TGCAACACGCACACACATGC+TGG | + | chr1_1:12539208-12539227 | Msa0008680:intron | 55.0% | |
| GCAACACGCACACACATGCT+GGG | + | chr1_1:12539209-12539228 | Msa0008680:intron | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | + | chr1_1:12539253-12539272 | Msa0008680:intron | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | + | chr1_1:12539480-12539499 | Msa0008680:CDS | 55.0% | |
| ! | GCTCGTGATATGATGGGAGG+GGG | + | chr1_1:12539906-12539925 | Msa0008680:CDS | 55.0% |
| ! | CTCGTGATATGATGGGAGGG+GGG | + | chr1_1:12539907-12539926 | Msa0008680:CDS | 55.0% |
| CATCAACATACCTCAGCCGG+AGG | - | chr1_1:12539972-12539991 | None:intergenic | 55.0% | |
| ! | GCCGGAAGGGTGAGTTGAAT+TGG | + | chr1_1:12540286-12540305 | Msa0008680:intron | 55.0% |
| TCCAGGCAAGTGTGACAGGA+CGG | + | chr1_1:12540394-12540413 | Msa0008680:intron | 55.0% | |
| GCAGTGGAGTTGGCTGCACA+AGG | + | chr1_1:12538899-12538918 | Msa0008680:CDS | 60.0% | |
| CGACCTTGCTGAGAAGGACC+AGG | + | chr1_1:12538985-12539004 | Msa0008680:CDS | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | + | chr1_1:12539483-12539502 | Msa0008680:CDS | 60.0% | |
| AACCGCCACCAGCTGCAACT+CGG | - | chr1_1:12539491-12539510 | None:intergenic | 60.0% | |
| TCCGTCCTGTCACACTTGCC+TGG | - | chr1_1:12540398-12540417 | None:intergenic | 60.0% | |
| GAAGCCACATCCTGTACGCC+CGG | + | chr1_1:12540416-12540435 | Msa0008680:CDS | 60.0% | |
| AAGCCACATCCTGTACGCCC+GGG | + | chr1_1:12540417-12540436 | Msa0008680:CDS | 60.0% | |
| AGAAACATGCCCGGGCGTAC+AGG | - | chr1_1:12540429-12540448 | None:intergenic | 60.0% | |
| ATGCCCGGGCGTACAGGATG+TGG | - | chr1_1:12540423-12540442 | None:intergenic | 65.0% | |
| CGCCGAGTTGCAGCTGGTGG+CGG | + | chr1_1:12539486-12539505 | Msa0008680:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 12538860 | 12541473 | 12538860 | ID=Msa0008680;Name=Msa0008680 |
| chr1_1 | mRNA | 12538860 | 12541473 | 12538860 | ID=Msa0008680-mRNA-1;Parent=Msa0008680;Name=Msa0008680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=9|0.85|0.87|1|1|1|8|196|301 |
| chr1_1 | exon | 12538860 | 12539015 | 12538860 | ID=Msa0008680-mRNA-1:exon:4736;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12539260 | 12539328 | 12539260 | ID=Msa0008680-mRNA-1:exon:4737;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12539426 | 12539596 | 12539426 | ID=Msa0008680-mRNA-1:exon:4738;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12539837 | 12539980 | 12539837 | ID=Msa0008680-mRNA-1:exon:4739;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12540094 | 12540294 | 12540094 | ID=Msa0008680-mRNA-1:exon:4740;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12540399 | 12540464 | 12540399 | ID=Msa0008680-mRNA-1:exon:4741;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12540711 | 12540770 | 12540711 | ID=Msa0008680-mRNA-1:exon:4742;Parent=Msa0008680-mRNA-1 |
| chr1_1 | exon | 12541230 | 12541473 | 12541230 | ID=Msa0008680-mRNA-1:exon:4743;Parent=Msa0008680-mRNA-1 |
| chr1_1 | five_prime_UTR | 12538860 | 12538868 | 12538860 | ID=Msa0008680-mRNA-1:five_prime_utr;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12538869 | 12539015 | 12538869 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12539260 | 12539328 | 12539260 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12539426 | 12539596 | 12539426 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12539837 | 12539980 | 12539837 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12540094 | 12540294 | 12540094 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12540399 | 12540464 | 12540399 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12540711 | 12540770 | 12540711 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | CDS | 12541230 | 12541277 | 12541230 | ID=Msa0008680-mRNA-1:cds;Parent=Msa0008680-mRNA-1 |
| chr1_1 | three_prime_UTR | 12541278 | 12541473 | 12541278 | ID=Msa0008680-mRNA-1:three_prime_utr;Parent=Msa0008680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
