Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057530 | XP_003588461.2 | 93.625 | 251 | 16 | 0 | 1 | 251 | 141 | 391 | 1.31e-170 | 486 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057530 | sp|Q1H5E9|PRDA1_ARATH | 77.255 | 255 | 54 | 1 | 1 | 251 | 143 | 397 | 7.06e-140 | 401 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057530 | G7I294 | 93.625 | 251 | 16 | 0 | 1 | 251 | 141 | 391 | 6.27e-171 | 486 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008680 | Msa0057530 | 0.824735 | 6.869568e-54 | -8.615850e-47 |
| Msa0012380 | Msa0057530 | 0.842797 | 2.076300e-58 | -8.615850e-47 |
| Msa0057530 | Msa0057690 | 0.811536 | 6.665588e-51 | -8.615850e-47 |
| Msa0057530 | Msa0064550 | 0.810903 | 9.142629e-51 | -8.615850e-47 |
| Msa0057530 | Msa0103160 | 0.879974 | 8.033966e-70 | -8.615850e-47 |
| Msa0057530 | Msa0224370 | 0.828788 | 7.400758e-55 | -8.615850e-47 |
| Msa0057530 | Msa0224400 | 0.838685 | 2.482840e-57 | -8.615850e-47 |
| Msa0057530 | Msa0240640 | 0.809704 | 1.659209e-50 | -8.615850e-47 |
| Msa0057530 | Msa0253160 | 0.838084 | 3.548344e-57 | -8.615850e-47 |
| Msa0057530 | Msa0265580 | 0.822785 | 1.967068e-53 | -8.615850e-47 |
| Msa0057530 | Msa0291940 | 0.824912 | 6.242493e-54 | -8.615850e-47 |
| Msa0057530 | Msa0303440 | 0.840023 | 1.115794e-57 | -8.615850e-47 |
| Msa0057530 | Msa0303500 | 0.840184 | 1.013177e-57 | -8.615850e-47 |
| Msa0057530 | Msa0344680 | 0.819732 | 9.948855e-53 | -8.615850e-47 |
| Msa0057530 | Msa0346790 | 0.813325 | 2.710148e-51 | -8.615850e-47 |
| Msa0057530 | Msa0392050 | 0.820120 | 8.113140e-53 | -8.615850e-47 |
| Msa0057530 | Msa0392540 | 0.815301 | 9.914035e-52 | -8.615850e-47 |
| Msa0057530 | Msa0401340 | 0.807880 | 4.072304e-50 | -8.615850e-47 |
| Msa0057530 | Msa0427740 | -0.801263 | 9.779635e-49 | -8.615850e-47 |
| Msa0057530 | Msa0440310 | 0.830471 | 2.883381e-55 | -8.615850e-47 |
| Msa0057530 | Msa0469950 | 0.822300 | 2.549588e-53 | -8.615850e-47 |
| Msa0057530 | Msa0487490 | 0.801915 | 7.187504e-49 | -8.615850e-47 |
| Msa0057530 | Msa0510510 | 0.810226 | 1.280476e-50 | -8.615850e-47 |
| Msa0057530 | Msa0518570 | -0.802609 | 5.172461e-49 | -8.615850e-47 |
| Msa0057530 | Msa0525270 | 0.818037 | 2.415083e-52 | -8.615850e-47 |
| Msa0057530 | Msa0525280 | 0.833795 | 4.343352e-56 | -8.615850e-47 |
| Msa0057530 | Msa0530340 | 0.806228 | 9.108264e-50 | -8.615850e-47 |
| Msa0057530 | Msa0545230 | 0.810896 | 9.177547e-51 | -8.615850e-47 |
| Msa0057530 | Msa0548210 | 0.800538 | 1.374836e-48 | -8.615850e-47 |
| Msa0057530 | Msa0627050 | 0.803248 | 3.815954e-49 | -8.615850e-47 |
| Msa0057530 | Msa0646190 | 0.821463 | 3.984945e-53 | -8.615850e-47 |
| Msa0057530 | Msa0646340 | 0.805607 | 1.230211e-49 | -8.615850e-47 |
| Msa0057530 | Msa0685890 | 0.806327 | 8.681879e-50 | -8.615850e-47 |
| Msa0057530 | Msa0729550 | 0.805719 | 1.165415e-49 | -8.615850e-47 |
| Msa0057530 | Msa0769830 | 0.815826 | 7.576165e-52 | -8.615850e-47 |
| Msa0057530 | Msa0793100 | 0.810349 | 1.204743e-50 | -8.615850e-47 |
| Msa0057530 | Msa0806720 | 0.842994 | 1.839865e-58 | -8.615850e-47 |
| Msa0057530 | Msa0806760 | 0.835319 | 1.798021e-56 | -8.615850e-47 |
| Msa0057530 | Msa0838100 | 0.801059 | 1.076609e-48 | -8.615850e-47 |
| Msa0057530 | Msa0848760 | 0.815348 | 9.682914e-52 | -8.615850e-47 |
| Msa0057530 | Msa0882700 | 0.803430 | 3.499918e-49 | -8.615850e-47 |
| Msa0057530 | Msa0944690 | 0.837972 | 3.791890e-57 | -8.615850e-47 |
| Msa0057530 | Msa0945960 | 0.825516 | 4.492635e-54 | -8.615850e-47 |
| Msa0057530 | Msa1040390 | 0.800225 | 1.592586e-48 | -8.615850e-47 |
| Msa0057530 | Msa1082150 | 0.816099 | 6.586089e-52 | -8.615850e-47 |
| Msa0057530 | Msa1115830 | 0.808296 | 3.320344e-50 | -8.615850e-47 |
| Msa0057530 | Msa1118460 | 0.812405 | 4.311439e-51 | -8.615850e-47 |
| Msa0057530 | Msa1118980 | 0.803467 | 3.437376e-49 | -8.615850e-47 |
| Msa0057530 | Msa1122720 | 0.812726 | 3.666796e-51 | -8.615850e-47 |
| Msa0057530 | Msa1144730 | 0.822437 | 2.370367e-53 | -8.615850e-47 |
| Msa0057530 | Msa1173380 | 0.807079 | 6.023180e-50 | -8.615850e-47 |
| Msa0057530 | Msa1177240 | 0.806095 | 9.716500e-50 | -8.615850e-47 |
| Msa0057530 | Msa1184010 | 0.853858 | 1.810016e-61 | -8.615850e-47 |
| Msa0057530 | Msa1228350 | 0.844026 | 9.751735e-59 | -8.615850e-47 |
| Msa0057530 | Msa1228460 | 0.825643 | 4.191141e-54 | -8.615850e-47 |
| Msa0057530 | Msa1317030 | 0.805472 | 1.313239e-49 | -8.615850e-47 |
| Msa0057530 | Msa1349810 | 0.814837 | 1.256833e-51 | -8.615850e-47 |
| Msa0057530 | Msa1359890 | 0.805181 | 1.510867e-49 | -8.615850e-47 |
| Msa0057530 | Msa1375780 | 0.808537 | 2.950360e-50 | -8.615850e-47 |
| Msa0057530 | Msa1394900 | 0.803754 | 2.997699e-49 | -8.615850e-47 |
| Msa0057530 | Msa1405380 | 0.828420 | 9.079103e-55 | -8.615850e-47 |
| Msa0057530 | Msa1420520 | 0.804390 | 2.210921e-49 | -8.615850e-47 |
| Msa0057530 | Msa1434660 | 0.805836 | 1.101383e-49 | -8.615850e-47 |
| Msa0057530 | Msa1459540 | 0.803874 | 2.830304e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057530 | MtrunA17_Chr1g0146581 | 93.625 | 251 | 16 | 0 | 1 | 251 | 141 | 391 | 1.21e-174 | 486 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057530 | AT5G48470.1 | 77.255 | 255 | 54 | 1 | 1 | 251 | 143 | 397 | 7.18e-141 | 401 |
Find 71 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTGTATGCACATTATTT+TGG | 0.191263 | 1_2:+13644363 | None:intergenic |
| GGTGAACTTCTTAACTAAAT+TGG | 0.216407 | 1_2:-13645042 | Msa0057530:CDS |
| AATAGAAACATTTGTGGATT+TGG | 0.230867 | 1_2:+13644387 | None:intergenic |
| GCTGGTGGCGGTTTATTTAA+AGG | 0.239511 | 1_2:-13645817 | Msa0057530:CDS |
| CCAGGCTGATGATTTATTAG+AGG | 0.340782 | 1_2:-13645740 | Msa0057530:intron |
| TGGTATCACTGCACAACATC+TGG | 0.381522 | 1_2:-13644435 | Msa0057530:CDS |
| GTTTCTCGAAACAGTCTCTA+AGG | 0.386239 | 1_2:-13644746 | Msa0057530:intron |
| AGGGTTTCAGTAGGATTTGC+TGG | 0.394147 | 1_2:-13644921 | Msa0057530:CDS |
| TCTATGTAGAACTCCCAAAA+AGG | 0.407720 | 1_2:-13645872 | Msa0057530:CDS |
| CGCCGAGTTGCAGCTGGTGG+CGG | 0.436206 | 1_2:-13645829 | Msa0057530:CDS |
| GTCTTGTCTGGTATATATGC+TGG | 0.441648 | 1_2:-13644467 | Msa0057530:CDS |
| AGAAGAAGCCCGTGATATGA+TGG | 0.446513 | 1_2:-13645295 | Msa0057530:CDS |
| ATGCCCGGGCGTACGGGATG+TGG | 0.451249 | 1_2:+13644769 | None:intergenic |
| TTTGGAAATAGAAACATTTG+TGG | 0.452347 | 1_2:+13644381 | None:intergenic |
| AAATTGGTGGCCTTAAAACC+TGG | 0.455899 | 1_2:-13645026 | Msa0057530:CDS |
| GAGAAACATGCCCGGGCGTA+CGG | 0.457983 | 1_2:+13644762 | None:intergenic |
| GATATCCAGGCAAGTGTGAC+AGG | 0.482176 | 1_2:-13644799 | Msa0057530:intron |
| CAAGGTCGATCATGTAATCA+AGG | 0.486722 | 1_2:+13646314 | None:intergenic |
| CACTGCACAACATCTGGAAT+GGG | 0.487263 | 1_2:-13644429 | Msa0057530:CDS |
| AAGAAGTTCCTTACCTGGGG+TGG | 0.495817 | 1_2:+13645995 | None:intergenic |
| ATATCCAGCACAACTTTCCC+AGG | 0.498084 | 1_2:+13645008 | None:intergenic |
| GAAGCCACATCCCGTACGCC+CGG | 0.501358 | 1_2:-13644773 | Msa0057530:CDS |
| CATGATCGACCTTGCTGAGA+AGG | 0.506824 | 1_2:-13646305 | Msa0057530:CDS |
| AGAAACATGCCCGGGCGTAC+GGG | 0.507961 | 1_2:+13644763 | None:intergenic |
| CAGATCGAAAACTGCTTGCA+AGG | 0.510311 | 1_2:-13645332 | Msa0057530:CDS |
| GAATTTACACCTTATCATCC+TGG | 0.511032 | 1_2:+13646281 | None:intergenic |
| TGTCATTTAGATTTGCCCCT+GGG | 0.513084 | 1_2:+13645770 | None:intergenic |
| GATGCAGCGCAAGTCACTGT+TGG | 0.515901 | 1_2:-13646062 | Msa0057530:intron |
| TGAGAAGGACCAGGATGATA+AGG | 0.516393 | 1_2:-13646290 | Msa0057530:intron |
| TCACTGCACAACATCTGGAA+TGG | 0.520829 | 1_2:-13644430 | Msa0057530:CDS |
| AAAACCTGGGAAAGTTGTGC+TGG | 0.524406 | 1_2:-13645012 | Msa0057530:CDS |
| TTTCAGTAGGATTTGCTGGA+AGG | 0.527571 | 1_2:-13644917 | Msa0057530:CDS |
| TTCAGTAGGATTTGCTGGAA+GGG | 0.534641 | 1_2:-13644916 | Msa0057530:intron |
| ATATACTCTACCTCCGGCTG+AGG | 0.542581 | 1_2:-13645235 | Msa0057530:intron |
| CTGGCAACGATGATGATGAC+AGG | 0.544853 | 1_2:-13644941 | Msa0057530:CDS |
| GCCCGTGATATGATGGGAGG+GGG | 0.546168 | 1_2:-13645288 | Msa0057530:CDS |
| TCACATCAACATACCTCAGC+CGG | 0.548413 | 1_2:+13645222 | None:intergenic |
| TTGTTACGCCGAGTTGCAGC+TGG | 0.549323 | 1_2:-13645835 | Msa0057530:CDS |
| GAACTTCTTAACTAAATTGG+TGG | 0.554110 | 1_2:-13645039 | Msa0057530:CDS |
| GACTTGAAGATTCATATCCC+AGG | 0.555335 | 1_2:-13645787 | Msa0057530:CDS |
| CGACCTTGCTGAGAAGGACC+AGG | 0.558031 | 1_2:-13646299 | Msa0057530:CDS |
| ATGATAAGAAATGTGATGCT+CGG | 0.559415 | 1_2:-13644987 | Msa0057530:CDS |
| TCTAAATGACATAGCTAACC+AGG | 0.561777 | 1_2:-13645758 | Msa0057530:CDS |
| AGAAGTTCCTTACCTGGGGT+GGG | 0.562953 | 1_2:+13645996 | None:intergenic |
| TGGATTATATACTCTACCTC+CGG | 0.568191 | 1_2:-13645241 | Msa0057530:CDS |
| ATGTCATTTAGATTTGCCCC+TGG | 0.570026 | 1_2:+13645769 | None:intergenic |
| AGCCCGTGATATGATGGGAG+GGG | 0.571772 | 1_2:-13645289 | Msa0057530:CDS |
| GAAGAAGCCCGTGATATGAT+GGG | 0.572557 | 1_2:-13645294 | Msa0057530:CDS |
| AACCGCCACCAGCTGCAACT+CGG | 0.572890 | 1_2:+13645827 | None:intergenic |
| CTGTTTCGAGAAACATGCCC+GGG | 0.576547 | 1_2:+13644755 | None:intergenic |
| CCTCTAATAAATCATCAGCC+TGG | 0.582816 | 1_2:+13645740 | None:intergenic |
| GATGATGACAGGGTTTCAGT+AGG | 0.598496 | 1_2:-13644930 | Msa0057530:CDS |
| TCCAGGCAAGTGTGACAGGA+CGG | 0.598526 | 1_2:-13644795 | Msa0057530:intron |
| ACTTGAAGATTCATATCCCA+GGG | 0.598867 | 1_2:-13645786 | Msa0057530:CDS |
| AATTGGTGGCCTTAAAACCT+GGG | 0.600896 | 1_2:-13645025 | Msa0057530:CDS |
| AAGCCACATCCCGTACGCCC+GGG | 0.603062 | 1_2:-13644772 | Msa0057530:CDS |
| TTACGCCGAGTTGCAGCTGG+TGG | 0.603081 | 1_2:-13645832 | Msa0057530:CDS |
| ACTGTTTCGAGAAACATGCC+CGG | 0.605216 | 1_2:+13644754 | None:intergenic |
| AAGCCCGTGATATGATGGGA+GGG | 0.613927 | 1_2:-13645290 | Msa0057530:CDS |
| CATCCTGGTCCTTCTCAGCA+AGG | 0.614327 | 1_2:+13646296 | None:intergenic |
| GTGATGCTCGGAAAAGATGA+AGG | 0.623308 | 1_2:-13644975 | Msa0057530:CDS |
| AAGGTCGATCATGTAATCAA+GGG | 0.636967 | 1_2:+13646315 | None:intergenic |
| TTGGATGAAAGAAATGACCG+TGG | 0.639445 | 1_2:-13645261 | Msa0057530:CDS |
| GAGGTAGAGTATATAATCCA+CGG | 0.643703 | 1_2:+13645244 | None:intergenic |
| GATGAAGGTGCAGACAACAC+TGG | 0.647546 | 1_2:-13644960 | Msa0057530:CDS |
| CCCGTGATATGATGGGAGGG+GGG | 0.648810 | 1_2:-13645287 | Msa0057530:CDS |
| GAAGCCCGTGATATGATGGG+AGG | 0.651249 | 1_2:-13645291 | Msa0057530:CDS |
| TGGCAACGATGATGATGACA+GGG | 0.681533 | 1_2:-13644940 | Msa0057530:CDS |
| CATCAACATACCTCAGCCGG+AGG | 0.697012 | 1_2:+13645225 | None:intergenic |
| ATATATGCTGGATCTGACAA+TGG | 0.706008 | 1_2:-13644455 | Msa0057530:CDS |
| CTTGAAGATTCATATCCCAG+GGG | 0.774008 | 1_2:-13645785 | Msa0057530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTGTAATAGATTATAGT+TGG | + | chr1_2:13644501-13644520 | None:intergenic | 20.0% |
| !! | AATCTATTACAATCTACATT+TGG | - | chr1_2:13644506-13644525 | Msa0057530:intron | 20.0% |
| !! | ATATTTATCACTCAATTGAA+AGG | + | chr1_2:13645240-13645259 | None:intergenic | 20.0% |
| !!! | TGTGTAGATTTAAAACTAAA+TGG | - | chr1_2:13645567-13645586 | Msa0057530:intron | 20.0% |
| !!! | CCAAGTATTTTACAATTATA+TGG | + | chr1_2:13646027-13646046 | None:intergenic | 20.0% |
| !! | CCATATAATTGTAAAATACT+TGG | - | chr1_2:13646024-13646043 | Msa0057530:CDS | 20.0% |
| !! | GTTATCAAAATAAAACAGTT+TGG | + | chr1_2:13646080-13646099 | None:intergenic | 20.0% |
| !!! | AAAAATAGAAAAGTATCAAC+TGG | + | chr1_2:13646194-13646213 | None:intergenic | 20.0% |
| !! | AGATTGTAATAGATTATAGT+TGG | + | chr1_2:13644501-13644520 | None:intergenic | 20.0% |
| !! | AATCTATTACAATCTACATT+TGG | - | chr1_2:13644506-13644525 | Msa0057530:intron | 20.0% |
| !! | ATATTTATCACTCAATTGAA+AGG | + | chr1_2:13645240-13645259 | None:intergenic | 20.0% |
| !!! | TGTGTAGATTTAAAACTAAA+TGG | - | chr1_2:13645567-13645586 | Msa0057530:intron | 20.0% |
| !!! | CCAAGTATTTTACAATTATA+TGG | + | chr1_2:13646027-13646046 | None:intergenic | 20.0% |
| !! | CCATATAATTGTAAAATACT+TGG | - | chr1_2:13646024-13646043 | Msa0057530:CDS | 20.0% |
| !! | GTTATCAAAATAAAACAGTT+TGG | + | chr1_2:13646080-13646099 | None:intergenic | 20.0% |
| !!! | AAAAATAGAAAAGTATCAAC+TGG | + | chr1_2:13646194-13646213 | None:intergenic | 20.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | - | chr1_2:13644788-13644807 | Msa0057530:CDS | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | + | chr1_2:13645011-13645030 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | - | chr1_2:13645313-13645332 | Msa0057530:CDS | 25.0% |
| !!! | ATTTTGTCGTTTGTGTTAAA+AGG | - | chr1_2:13645522-13645541 | Msa0057530:intron | 25.0% |
| !!! | TTTTGTCGTTTGTGTTAAAA+GGG | - | chr1_2:13645523-13645542 | Msa0057530:intron | 25.0% |
| ! | ACCATTCATCATAAAAACTA+TGG | + | chr1_2:13645976-13645995 | None:intergenic | 25.0% |
| ! | TACAATTATATGGAATTCTC+AGG | + | chr1_2:13646017-13646036 | None:intergenic | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | - | chr1_2:13646050-13646069 | Msa0057530:CDS | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | - | chr1_2:13646051-13646070 | Msa0057530:CDS | 25.0% |
| ! | TTGAAAATTTCACTCTATTG+GGG | - | chr1_2:13646052-13646071 | Msa0057530:CDS | 25.0% |
| ! | ATATATCAAGAACTGAGTAT+GGG | + | chr1_2:13646108-13646127 | None:intergenic | 25.0% |
| ! | TATATATCAAGAACTGAGTA+TGG | + | chr1_2:13646109-13646128 | None:intergenic | 25.0% |
| ! | TGTATGATAGAGTAATAATC+AGG | + | chr1_2:13646133-13646152 | None:intergenic | 25.0% |
| ! | AATAGAAACATTTGTGGATT+TGG | + | chr1_2:13646302-13646321 | None:intergenic | 25.0% |
| ! | TTTGGAAATAGAAACATTTG+TGG | + | chr1_2:13646308-13646327 | None:intergenic | 25.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | - | chr1_2:13644788-13644807 | Msa0057530:CDS | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | + | chr1_2:13645011-13645030 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | - | chr1_2:13645313-13645332 | Msa0057530:CDS | 25.0% |
| !!! | ATTTTGTCGTTTGTGTTAAA+AGG | - | chr1_2:13645522-13645541 | Msa0057530:intron | 25.0% |
| !!! | TTTTGTCGTTTGTGTTAAAA+GGG | - | chr1_2:13645523-13645542 | Msa0057530:intron | 25.0% |
| ! | ACCATTCATCATAAAAACTA+TGG | + | chr1_2:13645976-13645995 | None:intergenic | 25.0% |
| ! | TACAATTATATGGAATTCTC+AGG | + | chr1_2:13646017-13646036 | None:intergenic | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | - | chr1_2:13646050-13646069 | Msa0057530:CDS | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | - | chr1_2:13646051-13646070 | Msa0057530:CDS | 25.0% |
| ! | TTGAAAATTTCACTCTATTG+GGG | - | chr1_2:13646052-13646071 | Msa0057530:CDS | 25.0% |
| ! | ATATATCAAGAACTGAGTAT+GGG | + | chr1_2:13646108-13646127 | None:intergenic | 25.0% |
| ! | TATATATCAAGAACTGAGTA+TGG | + | chr1_2:13646109-13646128 | None:intergenic | 25.0% |
| ! | TGTATGATAGAGTAATAATC+AGG | + | chr1_2:13646133-13646152 | None:intergenic | 25.0% |
| ! | AATAGAAACATTTGTGGATT+TGG | + | chr1_2:13646302-13646321 | None:intergenic | 25.0% |
| ! | TTTGGAAATAGAAACATTTG+TGG | + | chr1_2:13646308-13646327 | None:intergenic | 25.0% |
| TTATTAAGCTTGGTCTGTTA+GGG | + | chr1_2:13644560-13644579 | None:intergenic | 30.0% | |
| ATTATTAAGCTTGGTCTGTT+AGG | + | chr1_2:13644561-13644580 | None:intergenic | 30.0% | |
| ATCGAAATATATGCACAGTT+AGG | + | chr1_2:13644607-13644626 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+TGG | + | chr1_2:13644750-13644769 | None:intergenic | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | + | chr1_2:13644785-13644804 | None:intergenic | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | + | chr1_2:13644786-13644805 | None:intergenic | 30.0% | |
| ! | TCATATCTGCTTTCCTTTTT+GGG | + | chr1_2:13644830-13644849 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | + | chr1_2:13644831-13644850 | None:intergenic | 30.0% |
| AAGGATAGAAAAAGTTAACC+AGG | + | chr1_2:13645221-13645240 | None:intergenic | 30.0% | |
| ! | AACAGTGTTTAAAATTCACG+TGG | + | chr1_2:13645292-13645311 | None:intergenic | 30.0% |
| GTCGCAAAAAAATATGCTTT+CGG | - | chr1_2:13645596-13645615 | Msa0057530:intron | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | - | chr1_2:13645644-13645663 | Msa0057530:intron | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | - | chr1_2:13645647-13645666 | Msa0057530:intron | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | - | chr1_2:13645699-13645718 | Msa0057530:intron | 30.0% | |
| ! | GCCATAGTTTTTATGATGAA+TGG | - | chr1_2:13645972-13645991 | Msa0057530:intron | 30.0% |
| !!! | GATACTTTTCTATTTTTGCC+AGG | - | chr1_2:13646197-13646216 | Msa0057530:intron | 30.0% |
| TTATTAAGCTTGGTCTGTTA+GGG | + | chr1_2:13644560-13644579 | None:intergenic | 30.0% | |
| ATTATTAAGCTTGGTCTGTT+AGG | + | chr1_2:13644561-13644580 | None:intergenic | 30.0% | |
| ATCGAAATATATGCACAGTT+AGG | + | chr1_2:13644607-13644626 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+TGG | + | chr1_2:13644750-13644769 | None:intergenic | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | + | chr1_2:13644785-13644804 | None:intergenic | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | + | chr1_2:13644786-13644805 | None:intergenic | 30.0% | |
| ! | TCATATCTGCTTTCCTTTTT+GGG | + | chr1_2:13644830-13644849 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | + | chr1_2:13644831-13644850 | None:intergenic | 30.0% |
| AAGGATAGAAAAAGTTAACC+AGG | + | chr1_2:13645221-13645240 | None:intergenic | 30.0% | |
| ! | AACAGTGTTTAAAATTCACG+TGG | + | chr1_2:13645292-13645311 | None:intergenic | 30.0% |
| GTCGCAAAAAAATATGCTTT+CGG | - | chr1_2:13645596-13645615 | Msa0057530:intron | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | - | chr1_2:13645644-13645663 | Msa0057530:intron | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | - | chr1_2:13645647-13645666 | Msa0057530:intron | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | - | chr1_2:13645699-13645718 | Msa0057530:intron | 30.0% | |
| ! | GCCATAGTTTTTATGATGAA+TGG | - | chr1_2:13645972-13645991 | Msa0057530:intron | 30.0% |
| !!! | GATACTTTTCTATTTTTGCC+AGG | - | chr1_2:13646197-13646216 | Msa0057530:intron | 30.0% |
| AAGGTCGATCATGTAATCAA+GGG | + | chr1_2:13644374-13644393 | None:intergenic | 35.0% | |
| GAATTTACACCTTATCATCC+TGG | + | chr1_2:13644408-13644427 | None:intergenic | 35.0% | |
| TGAGTTGCGATTATTAAGCT+TGG | + | chr1_2:13644570-13644589 | None:intergenic | 35.0% | |
| TTAAAGAAGTTCCTTACCTG+GGG | + | chr1_2:13644697-13644716 | None:intergenic | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | + | chr1_2:13644698-13644717 | None:intergenic | 35.0% | |
| !! | TCAGAAAAGTGTTTGAGAAG+TGG | + | chr1_2:13644721-13644740 | None:intergenic | 35.0% |
| TCTATGTAGAACTCCCAAAA+AGG | - | chr1_2:13644814-13644833 | Msa0057530:intron | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | - | chr1_2:13644900-13644919 | Msa0057530:intron | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | - | chr1_2:13644928-13644947 | Msa0057530:CDS | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | - | chr1_2:13645054-13645073 | Msa0057530:intron | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | - | chr1_2:13645067-13645086 | Msa0057530:intron | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | - | chr1_2:13645071-13645090 | Msa0057530:intron | 35.0% | |
| CTATATCTGAATTCTTGCCA+AGG | - | chr1_2:13645263-13645282 | Msa0057530:CDS | 35.0% | |
| TAAAATTCACGTGGTTTCCT+TGG | + | chr1_2:13645283-13645302 | None:intergenic | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | + | chr1_2:13645445-13645464 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | - | chr1_2:13645445-13645464 | Msa0057530:intron | 35.0% | |
| TCGTTTGTGTTAAAAGGGAT+TGG | - | chr1_2:13645528-13645547 | Msa0057530:intron | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | - | chr1_2:13645614-13645633 | Msa0057530:intron | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | - | chr1_2:13646231-13646250 | Msa0057530:intron | 35.0% | |
| AAGGTCGATCATGTAATCAA+GGG | + | chr1_2:13644374-13644393 | None:intergenic | 35.0% | |
| GAATTTACACCTTATCATCC+TGG | + | chr1_2:13644408-13644427 | None:intergenic | 35.0% | |
| TGAGTTGCGATTATTAAGCT+TGG | + | chr1_2:13644570-13644589 | None:intergenic | 35.0% | |
| TTAAAGAAGTTCCTTACCTG+GGG | + | chr1_2:13644697-13644716 | None:intergenic | 35.0% | |
| CTTAAAGAAGTTCCTTACCT+GGG | + | chr1_2:13644698-13644717 | None:intergenic | 35.0% | |
| !! | TCAGAAAAGTGTTTGAGAAG+TGG | + | chr1_2:13644721-13644740 | None:intergenic | 35.0% |
| TCTATGTAGAACTCCCAAAA+AGG | - | chr1_2:13644814-13644833 | Msa0057530:intron | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | - | chr1_2:13644900-13644919 | Msa0057530:intron | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | - | chr1_2:13644928-13644947 | Msa0057530:CDS | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | - | chr1_2:13645054-13645073 | Msa0057530:intron | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | - | chr1_2:13645067-13645086 | Msa0057530:intron | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | - | chr1_2:13645071-13645090 | Msa0057530:intron | 35.0% | |
| CTATATCTGAATTCTTGCCA+AGG | - | chr1_2:13645263-13645282 | Msa0057530:CDS | 35.0% | |
| TAAAATTCACGTGGTTTCCT+TGG | + | chr1_2:13645283-13645302 | None:intergenic | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | + | chr1_2:13645445-13645464 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | - | chr1_2:13645445-13645464 | Msa0057530:intron | 35.0% | |
| TCGTTTGTGTTAAAAGGGAT+TGG | - | chr1_2:13645528-13645547 | Msa0057530:intron | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | - | chr1_2:13645614-13645633 | Msa0057530:intron | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | - | chr1_2:13646231-13646250 | Msa0057530:intron | 35.0% | |
| CAAGGTCGATCATGTAATCA+AGG | + | chr1_2:13644375-13644394 | None:intergenic | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | + | chr1_2:13644473-13644492 | None:intergenic | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | - | chr1_2:13644472-13644491 | Msa0057530:intron | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | + | chr1_2:13644485-13644504 | None:intergenic | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | + | chr1_2:13644699-13644718 | None:intergenic | 40.0% | |
| ! | AACTCCTCCCTTCATCTTTT+AGG | - | chr1_2:13644775-13644794 | Msa0057530:CDS | 40.0% |
| TGAACCTAAAAGATGAAGGG+AGG | + | chr1_2:13644782-13644801 | None:intergenic | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | - | chr1_2:13644899-13644918 | Msa0057530:intron | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | - | chr1_2:13644901-13644920 | Msa0057530:intron | 40.0% | |
| ! | TGTCATTTAGATTTGCCCCT+GGG | + | chr1_2:13644919-13644938 | None:intergenic | 40.0% |
| ! | ATGTCATTTAGATTTGCCCC+TGG | + | chr1_2:13644920-13644939 | None:intergenic | 40.0% |
| CCTCTAATAAATCATCAGCC+TGG | + | chr1_2:13644949-13644968 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | - | chr1_2:13644946-13644965 | Msa0057530:CDS | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | - | chr1_2:13645070-13645089 | Msa0057530:intron | 40.0% | |
| GATATTGCACTTGAAAGACG+CGG | + | chr1_2:13645159-13645178 | None:intergenic | 40.0% | |
| !! | CAGGCATTTTAGAAAGCTTC+TGG | + | chr1_2:13645202-13645221 | None:intergenic | 40.0% |
| !! | CAGAAGCTTTCTAAAATGCC+TGG | - | chr1_2:13645200-13645219 | Msa0057530:intron | 40.0% |
| TTGGATGAAAGAAATGACCG+TGG | - | chr1_2:13645425-13645444 | Msa0057530:intron | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | - | chr1_2:13645623-13645642 | Msa0057530:intron | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | - | chr1_2:13645660-13645679 | Msa0057530:intron | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | - | chr1_2:13645661-13645680 | Msa0057530:intron | 40.0% |
| ! | CACAACTTTCCCAGGTTTTA+AGG | + | chr1_2:13645673-13645692 | None:intergenic | 40.0% |
| !! | TTTCAGTAGGATTTGCTGGA+AGG | - | chr1_2:13645769-13645788 | Msa0057530:CDS | 40.0% |
| !! | TTCAGTAGGATTTGCTGGAA+GGG | - | chr1_2:13645770-13645789 | Msa0057530:CDS | 40.0% |
| ACTTGTCTGTCATGATATCC+AGG | - | chr1_2:13645874-13645893 | Msa0057530:CDS | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | - | chr1_2:13645940-13645959 | Msa0057530:intron | 40.0% | |
| !! | TATTTTTGCCAGGTCTTGTC+TGG | - | chr1_2:13646207-13646226 | Msa0057530:intron | 40.0% |
| CATATATACCAGACAAGACC+TGG | + | chr1_2:13646218-13646237 | None:intergenic | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | - | chr1_2:13646219-13646238 | Msa0057530:intron | 40.0% | |
| CAAGGTCGATCATGTAATCA+AGG | + | chr1_2:13644375-13644394 | None:intergenic | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | + | chr1_2:13644473-13644492 | None:intergenic | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | - | chr1_2:13644472-13644491 | Msa0057530:intron | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | + | chr1_2:13644485-13644504 | None:intergenic | 40.0% | |
| GCTTAAAGAAGTTCCTTACC+TGG | + | chr1_2:13644699-13644718 | None:intergenic | 40.0% | |
| ! | AACTCCTCCCTTCATCTTTT+AGG | - | chr1_2:13644775-13644794 | Msa0057530:CDS | 40.0% |
| TGAACCTAAAAGATGAAGGG+AGG | + | chr1_2:13644782-13644801 | None:intergenic | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | - | chr1_2:13644899-13644918 | Msa0057530:intron | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | - | chr1_2:13644901-13644920 | Msa0057530:intron | 40.0% | |
| ! | TGTCATTTAGATTTGCCCCT+GGG | + | chr1_2:13644919-13644938 | None:intergenic | 40.0% |
| ! | ATGTCATTTAGATTTGCCCC+TGG | + | chr1_2:13644920-13644939 | None:intergenic | 40.0% |
| CCTCTAATAAATCATCAGCC+TGG | + | chr1_2:13644949-13644968 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | - | chr1_2:13644946-13644965 | Msa0057530:CDS | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | - | chr1_2:13645070-13645089 | Msa0057530:intron | 40.0% | |
| GATATTGCACTTGAAAGACG+CGG | + | chr1_2:13645159-13645178 | None:intergenic | 40.0% | |
| !! | CAGGCATTTTAGAAAGCTTC+TGG | + | chr1_2:13645202-13645221 | None:intergenic | 40.0% |
| !! | CAGAAGCTTTCTAAAATGCC+TGG | - | chr1_2:13645200-13645219 | Msa0057530:intron | 40.0% |
| TTGGATGAAAGAAATGACCG+TGG | - | chr1_2:13645425-13645444 | Msa0057530:intron | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | - | chr1_2:13645623-13645642 | Msa0057530:intron | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | - | chr1_2:13645660-13645679 | Msa0057530:intron | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | - | chr1_2:13645661-13645680 | Msa0057530:intron | 40.0% |
| ! | CACAACTTTCCCAGGTTTTA+AGG | + | chr1_2:13645673-13645692 | None:intergenic | 40.0% |
| !! | TTTCAGTAGGATTTGCTGGA+AGG | - | chr1_2:13645769-13645788 | Msa0057530:CDS | 40.0% |
| !! | TTCAGTAGGATTTGCTGGAA+GGG | - | chr1_2:13645770-13645789 | Msa0057530:CDS | 40.0% |
| ACTTGTCTGTCATGATATCC+AGG | - | chr1_2:13645874-13645893 | Msa0057530:CDS | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | - | chr1_2:13645940-13645959 | Msa0057530:intron | 40.0% | |
| !! | TATTTTTGCCAGGTCTTGTC+TGG | - | chr1_2:13646207-13646226 | Msa0057530:intron | 40.0% |
| CATATATACCAGACAAGACC+TGG | + | chr1_2:13646218-13646237 | None:intergenic | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | - | chr1_2:13646219-13646238 | Msa0057530:intron | 40.0% | |
| TGAGAAGGACCAGGATGATA+AGG | - | chr1_2:13644396-13644415 | Msa0057530:CDS | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | - | chr1_2:13644467-13644486 | Msa0057530:CDS | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | + | chr1_2:13644480-13644499 | None:intergenic | 45.0% | |
| AACTAAAAAATGCCCACCCC+AGG | - | chr1_2:13644678-13644697 | Msa0057530:intron | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | + | chr1_2:13644770-13644789 | None:intergenic | 45.0% | |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | - | chr1_2:13644869-13644888 | Msa0057530:intron | 45.0% |
| ! | AGTTTTCGATCTGGCACAAC+AGG | + | chr1_2:13645347-13645366 | None:intergenic | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | + | chr1_2:13645356-13645375 | None:intergenic | 45.0% |
| CAGATCGAAAACTGCTTGCA+AGG | - | chr1_2:13645354-13645373 | Msa0057530:CDS | 45.0% | |
| AGAAGAAGCCCGTGATATGA+TGG | - | chr1_2:13645391-13645410 | Msa0057530:intron | 45.0% | |
| GAAGAAGCCCGTGATATGAT+GGG | - | chr1_2:13645392-13645411 | Msa0057530:intron | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | + | chr1_2:13645467-13645486 | None:intergenic | 45.0% | |
| AAAACCTGGGAAAGTTGTGC+TGG | - | chr1_2:13645674-13645693 | Msa0057530:intron | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | + | chr1_2:13645681-13645700 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | - | chr1_2:13645711-13645730 | Msa0057530:intron | 45.0% | |
| ! | TGGCAACGATGATGATGACA+GGG | - | chr1_2:13645746-13645765 | Msa0057530:CDS | 45.0% |
| GATGATGACAGGGTTTCAGT+AGG | - | chr1_2:13645756-13645775 | Msa0057530:CDS | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+TGG | - | chr1_2:13645765-13645784 | Msa0057530:CDS | 45.0% | |
| ACTGTTTCGAGAAACATGCC+CGG | + | chr1_2:13645935-13645954 | None:intergenic | 45.0% | |
| ! | TCAACTGGAAGTGCAAACAC+AGG | + | chr1_2:13646179-13646198 | None:intergenic | 45.0% |
| TGGTATCACTGCACAACATC+TGG | - | chr1_2:13646251-13646270 | Msa0057530:intron | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | - | chr1_2:13646256-13646275 | Msa0057530:intron | 45.0% | |
| ! | CACTGCACAACATCTGGAAT+GGG | - | chr1_2:13646257-13646276 | Msa0057530:intron | 45.0% |
| CATGTAATCAAGGGCCATCA+TGG | + | chr1_2:13644365-13644384 | None:intergenic | 45.0% | |
| TGAGAAGGACCAGGATGATA+AGG | - | chr1_2:13644396-13644415 | Msa0057530:CDS | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | - | chr1_2:13644467-13644486 | Msa0057530:CDS | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | + | chr1_2:13644480-13644499 | None:intergenic | 45.0% | |
| AACTAAAAAATGCCCACCCC+AGG | - | chr1_2:13644678-13644697 | Msa0057530:intron | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | + | chr1_2:13644770-13644789 | None:intergenic | 45.0% | |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | - | chr1_2:13644869-13644888 | Msa0057530:intron | 45.0% |
| ! | AGTTTTCGATCTGGCACAAC+AGG | + | chr1_2:13645347-13645366 | None:intergenic | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | + | chr1_2:13645356-13645375 | None:intergenic | 45.0% |
| CAGATCGAAAACTGCTTGCA+AGG | - | chr1_2:13645354-13645373 | Msa0057530:CDS | 45.0% | |
| AGAAGAAGCCCGTGATATGA+TGG | - | chr1_2:13645391-13645410 | Msa0057530:intron | 45.0% | |
| GAAGAAGCCCGTGATATGAT+GGG | - | chr1_2:13645392-13645411 | Msa0057530:intron | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | + | chr1_2:13645467-13645486 | None:intergenic | 45.0% | |
| AAAACCTGGGAAAGTTGTGC+TGG | - | chr1_2:13645674-13645693 | Msa0057530:intron | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | + | chr1_2:13645681-13645700 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | - | chr1_2:13645711-13645730 | Msa0057530:intron | 45.0% | |
| ! | TGGCAACGATGATGATGACA+GGG | - | chr1_2:13645746-13645765 | Msa0057530:CDS | 45.0% |
| GATGATGACAGGGTTTCAGT+AGG | - | chr1_2:13645756-13645775 | Msa0057530:CDS | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+TGG | - | chr1_2:13645765-13645784 | Msa0057530:CDS | 45.0% | |
| ACTGTTTCGAGAAACATGCC+CGG | + | chr1_2:13645935-13645954 | None:intergenic | 45.0% | |
| ! | TCAACTGGAAGTGCAAACAC+AGG | + | chr1_2:13646179-13646198 | None:intergenic | 45.0% |
| TGGTATCACTGCACAACATC+TGG | - | chr1_2:13646251-13646270 | Msa0057530:intron | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | - | chr1_2:13646256-13646275 | Msa0057530:intron | 45.0% | |
| ! | CACTGCACAACATCTGGAAT+GGG | - | chr1_2:13646257-13646276 | Msa0057530:intron | 45.0% |
| CATGATCGACCTTGCTGAGA+AGG | - | chr1_2:13644381-13644400 | Msa0057530:CDS | 50.0% | |
| ATCGCAACTCACACACATGC+TGG | - | chr1_2:13644579-13644598 | Msa0057530:intron | 50.0% | |
| TCGCAACTCACACACATGCT+GGG | - | chr1_2:13644580-13644599 | Msa0057530:intron | 50.0% | |
| AAAAATGCCCACCCCAGGTA+AGG | - | chr1_2:13644683-13644702 | Msa0057530:intron | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | + | chr1_2:13644693-13644712 | None:intergenic | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | + | chr1_2:13644694-13644713 | None:intergenic | 50.0% | |
| ! | AAGCCCGTGATATGATGGGA+GGG | - | chr1_2:13645396-13645415 | Msa0057530:intron | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | - | chr1_2:13645406-13645425 | Msa0057530:intron | 50.0% |
| ATATACTCTACCTCCGGCTG+AGG | - | chr1_2:13645451-13645470 | Msa0057530:intron | 50.0% | |
| ! | GATGAAGGTGCAGACAACAC+TGG | - | chr1_2:13645726-13645745 | Msa0057530:intron | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | - | chr1_2:13645745-13645764 | Msa0057530:CDS | 50.0% |
| GTGAGTCGAATTGGATGACG+TGG | - | chr1_2:13645792-13645811 | Msa0057530:CDS | 50.0% | |
| GATATCCAGGCAAGTGTGAC+AGG | - | chr1_2:13645887-13645906 | Msa0057530:CDS | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | + | chr1_2:13645934-13645953 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | + | chr1_2:13646170-13646189 | None:intergenic | 50.0% | |
| CATGATCGACCTTGCTGAGA+AGG | - | chr1_2:13644381-13644400 | Msa0057530:CDS | 50.0% | |
| ATCGCAACTCACACACATGC+TGG | - | chr1_2:13644579-13644598 | Msa0057530:intron | 50.0% | |
| TCGCAACTCACACACATGCT+GGG | - | chr1_2:13644580-13644599 | Msa0057530:intron | 50.0% | |
| AAAAATGCCCACCCCAGGTA+AGG | - | chr1_2:13644683-13644702 | Msa0057530:intron | 50.0% | |
| AGAAGTTCCTTACCTGGGGT+GGG | + | chr1_2:13644693-13644712 | None:intergenic | 50.0% | |
| AAGAAGTTCCTTACCTGGGG+TGG | + | chr1_2:13644694-13644713 | None:intergenic | 50.0% | |
| ! | AAGCCCGTGATATGATGGGA+GGG | - | chr1_2:13645396-13645415 | Msa0057530:intron | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | - | chr1_2:13645406-13645425 | Msa0057530:intron | 50.0% |
| ATATACTCTACCTCCGGCTG+AGG | - | chr1_2:13645451-13645470 | Msa0057530:intron | 50.0% | |
| ! | GATGAAGGTGCAGACAACAC+TGG | - | chr1_2:13645726-13645745 | Msa0057530:intron | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | - | chr1_2:13645745-13645764 | Msa0057530:CDS | 50.0% |
| GTGAGTCGAATTGGATGACG+TGG | - | chr1_2:13645792-13645811 | Msa0057530:CDS | 50.0% | |
| GATATCCAGGCAAGTGTGAC+AGG | - | chr1_2:13645887-13645906 | Msa0057530:CDS | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | + | chr1_2:13645934-13645953 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | + | chr1_2:13646170-13646189 | None:intergenic | 50.0% | |
| CATCCTGGTCCTTCTCAGCA+AGG | + | chr1_2:13644393-13644412 | None:intergenic | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | - | chr1_2:13644624-13644643 | Msa0057530:intron | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | - | chr1_2:13644851-13644870 | Msa0057530:intron | 55.0% | |
| ! | GAAGCCCGTGATATGATGGG+AGG | - | chr1_2:13645395-13645414 | Msa0057530:intron | 55.0% |
| ! | AGCCCGTGATATGATGGGAG+GGG | - | chr1_2:13645397-13645416 | Msa0057530:intron | 55.0% |
| TCCCCCCTCCCATCATATCA+CGG | + | chr1_2:13645403-13645422 | None:intergenic | 55.0% | |
| CATCAACATACCTCAGCCGG+AGG | + | chr1_2:13645464-13645483 | None:intergenic | 55.0% | |
| GCTGGAAGGGTGAGTCGAAT+TGG | - | chr1_2:13645783-13645802 | Msa0057530:CDS | 55.0% | |
| TCCAGGCAAGTGTGACAGGA+CGG | - | chr1_2:13645891-13645910 | Msa0057530:CDS | 55.0% | |
| CATCCTGGTCCTTCTCAGCA+AGG | + | chr1_2:13644393-13644412 | None:intergenic | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | - | chr1_2:13644624-13644643 | Msa0057530:intron | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | - | chr1_2:13644851-13644870 | Msa0057530:intron | 55.0% | |
| ! | GAAGCCCGTGATATGATGGG+AGG | - | chr1_2:13645395-13645414 | Msa0057530:intron | 55.0% |
| ! | AGCCCGTGATATGATGGGAG+GGG | - | chr1_2:13645397-13645416 | Msa0057530:intron | 55.0% |
| TCCCCCCTCCCATCATATCA+CGG | + | chr1_2:13645403-13645422 | None:intergenic | 55.0% | |
| CATCAACATACCTCAGCCGG+AGG | + | chr1_2:13645464-13645483 | None:intergenic | 55.0% | |
| GCTGGAAGGGTGAGTCGAAT+TGG | - | chr1_2:13645783-13645802 | Msa0057530:CDS | 55.0% | |
| TCCAGGCAAGTGTGACAGGA+CGG | - | chr1_2:13645891-13645910 | Msa0057530:CDS | 55.0% | |
| CGACCTTGCTGAGAAGGACC+AGG | - | chr1_2:13644387-13644406 | Msa0057530:CDS | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | - | chr1_2:13644854-13644873 | Msa0057530:intron | 60.0% | |
| AACCGCCACCAGCTGCAACT+CGG | + | chr1_2:13644862-13644881 | None:intergenic | 60.0% | |
| ! | GCCCGTGATATGATGGGAGG+GGG | - | chr1_2:13645398-13645417 | Msa0057530:intron | 60.0% |
| CCCCCCTCCCATCATATCAC+GGG | + | chr1_2:13645402-13645421 | None:intergenic | 60.0% | |
| ! | CCCGTGATATGATGGGAGGG+GGG | - | chr1_2:13645399-13645418 | Msa0057530:intron | 60.0% |
| TCCGTCCTGTCACACTTGCC+TGG | + | chr1_2:13645895-13645914 | None:intergenic | 60.0% | |
| AGAAACATGCCCGGGCGTAC+GGG | + | chr1_2:13645926-13645945 | None:intergenic | 60.0% | |
| GAGAAACATGCCCGGGCGTA+CGG | + | chr1_2:13645927-13645946 | None:intergenic | 60.0% | |
| CGACCTTGCTGAGAAGGACC+AGG | - | chr1_2:13644387-13644406 | Msa0057530:CDS | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | - | chr1_2:13644854-13644873 | Msa0057530:intron | 60.0% | |
| AACCGCCACCAGCTGCAACT+CGG | + | chr1_2:13644862-13644881 | None:intergenic | 60.0% | |
| ! | GCCCGTGATATGATGGGAGG+GGG | - | chr1_2:13645398-13645417 | Msa0057530:intron | 60.0% |
| CCCCCCTCCCATCATATCAC+GGG | + | chr1_2:13645402-13645421 | None:intergenic | 60.0% | |
| ! | CCCGTGATATGATGGGAGGG+GGG | - | chr1_2:13645399-13645418 | Msa0057530:intron | 60.0% |
| TCCGTCCTGTCACACTTGCC+TGG | + | chr1_2:13645895-13645914 | None:intergenic | 60.0% | |
| AGAAACATGCCCGGGCGTAC+GGG | + | chr1_2:13645926-13645945 | None:intergenic | 60.0% | |
| GAGAAACATGCCCGGGCGTA+CGG | + | chr1_2:13645927-13645946 | None:intergenic | 60.0% | |
| GAAGCCACATCCCGTACGCC+CGG | - | chr1_2:13645913-13645932 | Msa0057530:intron | 65.0% | |
| AAGCCACATCCCGTACGCCC+GGG | - | chr1_2:13645914-13645933 | Msa0057530:intron | 65.0% | |
| GAAGCCACATCCCGTACGCC+CGG | - | chr1_2:13645913-13645932 | Msa0057530:intron | 65.0% | |
| AAGCCACATCCCGTACGCCC+GGG | - | chr1_2:13645914-13645933 | Msa0057530:intron | 65.0% | |
| CGCCGAGTTGCAGCTGGTGG+CGG | - | chr1_2:13644857-13644876 | Msa0057530:intron | 70.0% | |
| ATGCCCGGGCGTACGGGATG+TGG | + | chr1_2:13645920-13645939 | None:intergenic | 70.0% | |
| CGCCGAGTTGCAGCTGGTGG+CGG | - | chr1_2:13644857-13644876 | Msa0057530:intron | 70.0% | |
| ATGCCCGGGCGTACGGGATG+TGG | + | chr1_2:13645920-13645939 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 13644364 | 13646344 | 13644364 | ID=Msa0057530;Name=Msa0057530 |
| chr1_2 | mRNA | 13644364 | 13646344 | 13644364 | ID=Msa0057530-mRNA-1;Parent=Msa0057530;Name=Msa0057530-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.83|0.57|1|1|1|7|0|259 |
| chr1_2 | exon | 13646291 | 13646344 | 13646291 | ID=Msa0057530-mRNA-1:exon:5413;Parent=Msa0057530-mRNA-1 |
| chr1_2 | exon | 13646009 | 13646077 | 13646009 | ID=Msa0057530-mRNA-1:exon:5412;Parent=Msa0057530-mRNA-1 |
| chr1_2 | exon | 13645741 | 13645911 | 13645741 | ID=Msa0057530-mRNA-1:exon:5411;Parent=Msa0057530-mRNA-1 |
| chr1_2 | exon | 13645236 | 13645379 | 13645236 | ID=Msa0057530-mRNA-1:exon:5410;Parent=Msa0057530-mRNA-1 |
| chr1_2 | exon | 13644917 | 13645063 | 13644917 | ID=Msa0057530-mRNA-1:exon:5409;Parent=Msa0057530-mRNA-1 |
| chr1_2 | exon | 13644747 | 13644812 | 13644747 | ID=Msa0057530-mRNA-1:exon:5408;Parent=Msa0057530-mRNA-1 |
| chr1_2 | exon | 13644364 | 13644489 | 13644364 | ID=Msa0057530-mRNA-1:exon:5407;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13646291 | 13646344 | 13646291 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13646009 | 13646077 | 13646009 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13645741 | 13645911 | 13645741 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13645236 | 13645379 | 13645236 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13644917 | 13645063 | 13644917 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13644747 | 13644812 | 13644747 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| chr1_2 | CDS | 13644364 | 13644489 | 13644364 | ID=Msa0057530-mRNA-1:cds;Parent=Msa0057530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
